Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47127.t1 | XP_003618818.1 | 99.5 | 425 | 2 | 0 | 1 | 425 | 1 | 425 | 3.60E-237 | 830.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47127.t1 | Q8W575 | 61.1 | 427 | 162 | 4 | 1 | 425 | 5 | 429 | 1.9e-138 | 493.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47127.t1 | G7KNL3 | 99.5 | 425 | 2 | 0 | 1 | 425 | 1 | 425 | 2.6e-237 | 830.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06946 | MS.gene47127 | PPI |
| MS.gene013607 | MS.gene47127 | PPI |
| MS.gene06729 | MS.gene47127 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47127.t1 | MTR_6g023350 | 99.529 | 425 | 2 | 0 | 1 | 425 | 1 | 425 | 0.0 | 877 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47127.t1 | AT5G14250 | 61.124 | 427 | 162 | 4 | 1 | 425 | 5 | 429 | 0.0 | 522 |
| MS.gene47127.t1 | AT5G14250 | 58.235 | 340 | 140 | 2 | 1 | 340 | 5 | 342 | 1.36e-136 | 395 |
Find 90 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTTATGCTTTGCTTGT+TGG | 0.295138 | 6.3:-16610101 | MS.gene47127:CDS |
| TCTTAAATGTTGAATCTTGT+TGG | 0.298235 | 6.3:+16605383 | None:intergenic |
| ATCTCACCATTCCATCCTTC+TGG | 0.329223 | 6.3:+16606365 | None:intergenic |
| CTATATCTCTACTGTTATTA+CGG | 0.329893 | 6.3:-16610010 | MS.gene47127:CDS |
| TCAGAACCCTTGCATTGAAT+TGG | 0.340785 | 6.3:-16606916 | MS.gene47127:intron |
| CAAAACTGGTCTATCCATAT+TGG | 0.367815 | 6.3:-16610068 | MS.gene47127:CDS |
| GGATGGAATGGTGAGATTCT+TGG | 0.373161 | 6.3:-16606359 | MS.gene47127:CDS |
| CACATGCATTTCAGCTTCCT+TGG | 0.394724 | 6.3:+16606514 | None:intergenic |
| AGCGAGGGGAGAAGCATACT+TGG | 0.421227 | 6.3:+16607774 | None:intergenic |
| TATATCTCTACTGTTATTAC+GGG | 0.421454 | 6.3:-16610009 | MS.gene47127:intron |
| CGTAATAACAGTAGAGATAT+AGG | 0.426761 | 6.3:+16610011 | None:intergenic |
| TTGGCAAAATGCTACAAAAC+TGG | 0.432018 | 6.3:-16610082 | MS.gene47127:CDS |
| CTCCAATGTTCACTGCTCTT+CGG | 0.438093 | 6.3:-16610168 | MS.gene47127:CDS |
| CCTTGGATTTGTGCGATCAA+TGG | 0.442532 | 6.3:+16613371 | None:intergenic |
| AGGATCAATGAGTTGAAGAA+TGG | 0.444821 | 6.3:+16613256 | None:intergenic |
| ATAGCATTCATCATAGTCAT+AGG | 0.448117 | 6.3:+16608096 | None:intergenic |
| TTACTTAATGTTCAGAATGA+TGG | 0.450319 | 6.3:-16606135 | MS.gene47127:intron |
| ATTGGAGCCACCCCACGTAT+AGG | 0.459403 | 6.3:+16610184 | None:intergenic |
| CTGAATATTCCGCTTATACA+TGG | 0.466470 | 6.3:+16606604 | None:intergenic |
| CAACCTTGGACTGGCTAAGC+AGG | 0.473859 | 6.3:-16606636 | MS.gene47127:CDS |
| CGGAGGAGCTTGATAGACCT+TGG | 0.473958 | 6.3:+16613354 | None:intergenic |
| TTCTCTCATTCGTCATGGAC+AGG | 0.474183 | 6.3:-16608040 | MS.gene47127:intron |
| CGGAAAAGTTGCAGAGGTAG+AGG | 0.477478 | 6.3:-16606877 | MS.gene47127:CDS |
| CCTGCAGTGTGGAGCAGATT+CGG | 0.479360 | 6.3:-16610890 | MS.gene47127:CDS |
| GCATAAGAAACTCTGCATGC+AGG | 0.480835 | 6.3:+16610113 | None:intergenic |
| GGGATAGAGACGAGATGAAT+CGG | 0.482440 | 6.3:+16613277 | None:intergenic |
| GAGAAAACCGAGAGAATGAA+TGG | 0.484905 | 6.3:+16613232 | None:intergenic |
| GGATCAATGAGTTGAAGAAT+GGG | 0.486817 | 6.3:+16613257 | None:intergenic |
| GATCCTTCCATTCATTCTCT+CGG | 0.488403 | 6.3:-16613239 | MS.gene47127:CDS |
| GAGCTTCCAGCAGCGTTACT+AGG | 0.489593 | 6.3:+16610206 | None:intergenic |
| TAGCTATGTCTTCGAGAGAA+AGG | 0.490027 | 6.3:+16606558 | None:intergenic |
| ATCTGTTTGCAAGAGGTTGA+AGG | 0.493333 | 6.3:-16610230 | MS.gene47127:CDS |
| AGAAGCATACTTGGGAAGAC+TGG | 0.496098 | 6.3:+16607783 | None:intergenic |
| CATAAGAAACTCTGCATGCA+GGG | 0.503844 | 6.3:+16610114 | None:intergenic |
| CAATGGTTCGAGAGGATCCA+TGG | 0.510795 | 6.3:+16613388 | None:intergenic |
| TGCTGGAAGCTCCTATACGT+GGG | 0.519506 | 6.3:-16610195 | MS.gene47127:CDS |
| AATATGCTCAATCATTTCGC+AGG | 0.519981 | 6.3:+16606315 | None:intergenic |
| CAGTAGAGATATAGGTCTCT+CGG | 0.522706 | 6.3:+16610019 | None:intergenic |
| AAATCAGCAGCAAGCTGAAG+AGG | 0.523221 | 6.3:-16610943 | MS.gene47127:CDS |
| TTGATAAATCTTGCTATGAT+CGG | 0.524405 | 6.3:+16610915 | None:intergenic |
| GATTACTTACATTATGAAGA+AGG | 0.524623 | 6.3:+16608234 | None:intergenic |
| TTGGTTTCTCTCATTCGTCA+TGG | 0.527954 | 6.3:-16608045 | MS.gene47127:CDS |
| TACAGAGGTATGATATGCAT+TGG | 0.528372 | 6.3:-16608284 | MS.gene47127:intron |
| TTAGGATAACAACCTTGGAC+TGG | 0.529794 | 6.3:-16606645 | MS.gene47127:intron |
| CCGAATCTGCTCCACACTGC+AGG | 0.532635 | 6.3:+16610890 | None:intergenic |
| TTCCGAAGAGCAGTGAACAT+TGG | 0.535930 | 6.3:+16610166 | None:intergenic |
| AGCTATGTCTTCGAGAGAAA+GGG | 0.537463 | 6.3:+16606559 | None:intergenic |
| TTCATCGGAGTGTTTCAAGA+TGG | 0.541287 | 6.3:+16613310 | None:intergenic |
| GAAGCGCTTTCAGAAAGCAT+TGG | 0.543315 | 6.3:-16608258 | MS.gene47127:CDS |
| AAGACGAGCGATGTCGGCGG+AGG | 0.543747 | 6.3:+16613337 | None:intergenic |
| GTCTGGGCCAATTCAATGCA+AGG | 0.543928 | 6.3:+16606909 | None:intergenic |
| TTTCAGATTTCTTTGAGCGA+GGG | 0.544158 | 6.3:+16607759 | None:intergenic |
| TTGTCAATGCAAATGCAGGC+AGG | 0.550978 | 6.3:-16606851 | MS.gene47127:CDS |
| GCAACAATCAACCAGAAGGA+TGG | 0.554867 | 6.3:-16606376 | MS.gene47127:CDS |
| GCATTTGTCAATGCAAATGC+AGG | 0.557429 | 6.3:-16606855 | MS.gene47127:CDS |
| TAGTTGTATCTGTTTGCAAG+AGG | 0.567352 | 6.3:-16610237 | MS.gene47127:CDS |
| TGAAATGCATGTGCTACAAA+TGG | 0.568753 | 6.3:-16606504 | MS.gene47127:intron |
| GGTATGAAGACGAGCGATGT+CGG | 0.572373 | 6.3:+16613331 | None:intergenic |
| GTTTCAGATTTCTTTGAGCG+AGG | 0.575012 | 6.3:+16607758 | None:intergenic |
| CTGCTGGAAGCTCCTATACG+TGG | 0.576435 | 6.3:-16610196 | MS.gene47127:CDS |
| TTCAGATTTCTTTGAGCGAG+GGG | 0.580162 | 6.3:+16607760 | None:intergenic |
| GAAGGACCTAGTAACGCTGC+TGG | 0.584159 | 6.3:-16610212 | MS.gene47127:CDS |
| CAGTGTGGAGCAGATTCGGT+TGG | 0.587628 | 6.3:-16610886 | MS.gene47127:CDS |
| AAACCGAGAGAATGAATGGA+AGG | 0.587778 | 6.3:+16613236 | None:intergenic |
| AATCAACCAGAAGGATGGAA+TGG | 0.588048 | 6.3:-16606371 | MS.gene47127:CDS |
| TGGAATGGTGAGATTCTTGG+AGG | 0.596939 | 6.3:-16606356 | MS.gene47127:CDS |
| ATCGGAACGGAGAGTTTCAT+CGG | 0.598675 | 6.3:+16613295 | None:intergenic |
| AGTTCATTTAAATAGTGCCA+AGG | 0.609254 | 6.3:-16606531 | MS.gene47127:CDS |
| GGAAGCTCCTATACGTGGGG+TGG | 0.610466 | 6.3:-16610191 | MS.gene47127:CDS |
| CAACCTGCTTAGCCAGTCCA+AGG | 0.613925 | 6.3:+16606633 | None:intergenic |
| GTCAAAGAAACTAACTGCAA+CGG | 0.614831 | 6.3:-16606108 | MS.gene47127:CDS |
| CCATTGATCGCACAAATCCA+AGG | 0.619652 | 6.3:-16613371 | MS.gene47127:CDS |
| ATATGCAACAATCAACCAGA+AGG | 0.635180 | 6.3:-16606380 | MS.gene47127:CDS |
| TTGTATCATCCATGTATAAG+CGG | 0.635665 | 6.3:-16606613 | MS.gene47127:CDS |
| TGTGCGATCAATGGTTCGAG+AGG | 0.637370 | 6.3:+16613380 | None:intergenic |
| GCGAGGGGAGAAGCATACTT+GGG | 0.641248 | 6.3:+16607775 | None:intergenic |
| TCTGATCTACAGATTCAGGA+TGG | 0.643273 | 6.3:-16606409 | MS.gene47127:intron |
| ATAAGAAACTCTGCATGCAG+GGG | 0.649754 | 6.3:+16610115 | None:intergenic |
| TGATCAGTTGTACTTGTCCA+AGG | 0.651932 | 6.3:-16606069 | MS.gene47127:intron |
| GCTGGAAGCTCCTATACGTG+GGG | 0.660249 | 6.3:-16610194 | MS.gene47127:CDS |
| TCTGGGCCAATTCAATGCAA+GGG | 0.662554 | 6.3:+16606910 | None:intergenic |
| TAACAACGGAAAAGTTGCAG+AGG | 0.665631 | 6.3:-16606883 | MS.gene47127:CDS |
| AGAGATATAGGTCTCTCGGA+TGG | 0.677401 | 6.3:+16610023 | None:intergenic |
| ATTTATCAATGCCTGCAGTG+TGG | 0.685420 | 6.3:-16610901 | MS.gene47127:CDS |
| CAGGGGAGTCAAATGCTCAG+TGG | 0.685717 | 6.3:+16610132 | None:intergenic |
| AAATGCAGGCAGGTTCGAAG+CGG | 0.698705 | 6.3:-16606841 | MS.gene47127:intron |
| ATGAAGACGAGCGATGTCGG+CGG | 0.704411 | 6.3:+16613334 | None:intergenic |
| ATATTGATTCATCAATCCAG+AGG | 0.706848 | 6.3:-16606297 | MS.gene47127:intron |
| AGAGACGAGATGAATCGGAA+CGG | 0.707548 | 6.3:+16613282 | None:intergenic |
| TTGGCCCAGACTTATAACAA+CGG | 0.733238 | 6.3:-16606897 | MS.gene47127:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 16605385 | 16613408 | 16605385 | ID=MS.gene47127 |
| chr6.3 | mRNA | 16605385 | 16613408 | 16605385 | ID=MS.gene47127.t1;Parent=MS.gene47127 |
| chr6.3 | exon | 16613224 | 16613408 | 16613224 | ID=MS.gene47127.t1.exon1;Parent=MS.gene47127.t1 |
| chr6.3 | CDS | 16613224 | 16613408 | 16613224 | ID=cds.MS.gene47127.t1;Parent=MS.gene47127.t1 |
| chr6.3 | exon | 16610874 | 16610992 | 16610874 | ID=MS.gene47127.t1.exon2;Parent=MS.gene47127.t1 |
| chr6.3 | CDS | 16610874 | 16610992 | 16610874 | ID=cds.MS.gene47127.t1;Parent=MS.gene47127.t1 |
| chr6.3 | exon | 16610010 | 16610256 | 16610010 | ID=MS.gene47127.t1.exon3;Parent=MS.gene47127.t1 |
| chr6.3 | CDS | 16610010 | 16610256 | 16610010 | ID=cds.MS.gene47127.t1;Parent=MS.gene47127.t1 |
| chr6.3 | exon | 16608244 | 16608301 | 16608244 | ID=MS.gene47127.t1.exon4;Parent=MS.gene47127.t1 |
| chr6.3 | CDS | 16608244 | 16608301 | 16608244 | ID=cds.MS.gene47127.t1;Parent=MS.gene47127.t1 |
| chr6.3 | exon | 16608041 | 16608130 | 16608041 | ID=MS.gene47127.t1.exon5;Parent=MS.gene47127.t1 |
| chr6.3 | CDS | 16608041 | 16608130 | 16608041 | ID=cds.MS.gene47127.t1;Parent=MS.gene47127.t1 |
| chr6.3 | exon | 16607747 | 16607812 | 16607747 | ID=MS.gene47127.t1.exon6;Parent=MS.gene47127.t1 |
| chr6.3 | CDS | 16607747 | 16607812 | 16607747 | ID=cds.MS.gene47127.t1;Parent=MS.gene47127.t1 |
| chr6.3 | exon | 16606842 | 16606934 | 16606842 | ID=MS.gene47127.t1.exon7;Parent=MS.gene47127.t1 |
| chr6.3 | CDS | 16606842 | 16606934 | 16606842 | ID=cds.MS.gene47127.t1;Parent=MS.gene47127.t1 |
| chr6.3 | exon | 16606505 | 16606663 | 16606505 | ID=MS.gene47127.t1.exon8;Parent=MS.gene47127.t1 |
| chr6.3 | CDS | 16606505 | 16606663 | 16606505 | ID=cds.MS.gene47127.t1;Parent=MS.gene47127.t1 |
| chr6.3 | exon | 16606298 | 16606419 | 16606298 | ID=MS.gene47127.t1.exon9;Parent=MS.gene47127.t1 |
| chr6.3 | CDS | 16606298 | 16606419 | 16606298 | ID=cds.MS.gene47127.t1;Parent=MS.gene47127.t1 |
| chr6.3 | exon | 16606070 | 16606142 | 16606070 | ID=MS.gene47127.t1.exon10;Parent=MS.gene47127.t1 |
| chr6.3 | CDS | 16606070 | 16606142 | 16606070 | ID=cds.MS.gene47127.t1;Parent=MS.gene47127.t1 |
| chr6.3 | exon | 16605385 | 16605450 | 16605385 | ID=MS.gene47127.t1.exon11;Parent=MS.gene47127.t1 |
| chr6.3 | CDS | 16605385 | 16605450 | 16605385 | ID=cds.MS.gene47127.t1;Parent=MS.gene47127.t1 |
| Gene Sequence |
| Protein sequence |