Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47526.t1 | XP_003608087.1 | 94.8 | 366 | 17 | 1 | 1 | 366 | 1 | 364 | 1.00E-187 | 666 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47526.t1 | Q43725 | 76.5 | 328 | 77 | 0 | 38 | 365 | 102 | 429 | 6.2e-146 | 518.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47526.t1 | G7JNN6 | 94.8 | 366 | 17 | 1 | 1 | 366 | 1 | 364 | 7.2e-188 | 666.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene47526 | 0.848324 | 6.59E-60 | -1.69E-46 |
| MS.gene05240 | MS.gene47526 | 0.812077 | 5.08E-51 | -1.69E-46 |
| MS.gene052606 | MS.gene47526 | 0.812335 | 4.46E-51 | -1.69E-46 |
| MS.gene052702 | MS.gene47526 | 0.824254 | 8.92E-54 | -1.69E-46 |
| MS.gene056697 | MS.gene47526 | 0.817952 | 2.52E-52 | -1.69E-46 |
| MS.gene060593 | MS.gene47526 | 0.804791 | 1.82E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47526.t1 | MTR_4g087490 | 96.286 | 350 | 13 | 0 | 17 | 366 | 15 | 364 | 0.0 | 684 |
| MS.gene47526.t1 | MTR_4g087510 | 87.432 | 366 | 35 | 3 | 1 | 366 | 1 | 355 | 0.0 | 640 |
| MS.gene47526.t1 | MTR_4g087520 | 82.593 | 270 | 47 | 0 | 97 | 366 | 1 | 270 | 1.10e-154 | 436 |
| MS.gene47526.t1 | MTR_5g006340 | 70.440 | 318 | 94 | 0 | 49 | 366 | 8 | 325 | 4.24e-153 | 434 |
| MS.gene47526.t1 | MTR_1g081610 | 71.160 | 319 | 92 | 0 | 44 | 362 | 3 | 321 | 2.00e-152 | 432 |
| MS.gene47526.t1 | MTR_1g103690 | 70.440 | 318 | 94 | 0 | 49 | 366 | 8 | 325 | 2.39e-152 | 432 |
| MS.gene47526.t1 | MTR_1g081620 | 63.376 | 314 | 115 | 0 | 49 | 362 | 7 | 320 | 1.66e-142 | 407 |
| MS.gene47526.t1 | MTR_1g081625 | 63.376 | 314 | 115 | 0 | 49 | 362 | 7 | 320 | 2.75e-137 | 394 |
| MS.gene47526.t1 | MTR_7g087110 | 59.104 | 335 | 127 | 1 | 28 | 362 | 44 | 368 | 2.24e-136 | 393 |
| MS.gene47526.t1 | MTR_7g078070 | 59.621 | 317 | 128 | 0 | 48 | 364 | 60 | 376 | 2.53e-134 | 388 |
| MS.gene47526.t1 | MTR_7g078070 | 60.323 | 310 | 123 | 0 | 55 | 364 | 7 | 316 | 1.15e-132 | 382 |
| MS.gene47526.t1 | MTR_7g078070 | 60.777 | 283 | 111 | 0 | 82 | 364 | 1 | 283 | 4.32e-122 | 354 |
| MS.gene47526.t1 | MTR_1g081640 | 60.791 | 278 | 109 | 0 | 49 | 326 | 7 | 284 | 8.49e-111 | 326 |
| MS.gene47526.t1 | MTR_5g095670 | 27.887 | 355 | 197 | 6 | 51 | 348 | 46 | 398 | 1.87e-38 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47526.t1 | AT3G59760 | 76.524 | 328 | 77 | 0 | 38 | 365 | 102 | 429 | 0.0 | 509 |
| MS.gene47526.t1 | AT3G59760 | 76.524 | 328 | 77 | 0 | 38 | 365 | 102 | 429 | 0.0 | 509 |
| MS.gene47526.t1 | AT2G43750 | 74.848 | 330 | 83 | 0 | 36 | 365 | 62 | 391 | 1.18e-176 | 496 |
| MS.gene47526.t1 | AT2G43750 | 74.848 | 330 | 83 | 0 | 36 | 365 | 62 | 391 | 1.18e-176 | 496 |
| MS.gene47526.t1 | AT3G59760 | 76.000 | 300 | 72 | 0 | 38 | 337 | 102 | 401 | 6.53e-162 | 461 |
| MS.gene47526.t1 | AT4G14880 | 66.246 | 317 | 107 | 0 | 49 | 365 | 5 | 321 | 8.59e-148 | 421 |
| MS.gene47526.t1 | AT4G14880 | 66.246 | 317 | 107 | 0 | 49 | 365 | 5 | 321 | 8.59e-148 | 421 |
| MS.gene47526.t1 | AT4G14880 | 66.246 | 317 | 107 | 0 | 49 | 365 | 5 | 321 | 8.59e-148 | 421 |
| MS.gene47526.t1 | AT4G14880 | 66.246 | 317 | 107 | 0 | 49 | 365 | 5 | 321 | 8.59e-148 | 421 |
| MS.gene47526.t1 | AT4G14880 | 66.246 | 317 | 107 | 0 | 49 | 365 | 5 | 321 | 8.59e-148 | 421 |
| MS.gene47526.t1 | AT3G04940 | 64.151 | 318 | 114 | 0 | 45 | 362 | 4 | 321 | 4.97e-139 | 398 |
| MS.gene47526.t1 | AT3G04940 | 64.151 | 318 | 114 | 0 | 45 | 362 | 4 | 321 | 4.97e-139 | 398 |
| MS.gene47526.t1 | AT5G28020 | 64.151 | 318 | 114 | 0 | 45 | 362 | 3 | 320 | 5.86e-138 | 395 |
| MS.gene47526.t1 | AT5G28020 | 64.151 | 318 | 114 | 0 | 45 | 362 | 3 | 320 | 5.86e-138 | 395 |
| MS.gene47526.t1 | AT5G28020 | 64.151 | 318 | 114 | 0 | 45 | 362 | 3 | 320 | 5.86e-138 | 395 |
| MS.gene47526.t1 | AT5G28020 | 64.151 | 318 | 114 | 0 | 45 | 362 | 3 | 320 | 5.86e-138 | 395 |
| MS.gene47526.t1 | AT5G28020 | 64.151 | 318 | 114 | 0 | 45 | 362 | 3 | 320 | 5.86e-138 | 395 |
| MS.gene47526.t1 | AT5G28030 | 62.617 | 321 | 120 | 0 | 45 | 365 | 3 | 323 | 4.34e-135 | 388 |
| MS.gene47526.t1 | AT5G28030 | 62.617 | 321 | 120 | 0 | 45 | 365 | 3 | 323 | 4.34e-135 | 388 |
| MS.gene47526.t1 | AT5G28030 | 62.617 | 321 | 120 | 0 | 45 | 365 | 3 | 323 | 4.34e-135 | 388 |
| MS.gene47526.t1 | AT5G28030 | 62.617 | 321 | 120 | 0 | 45 | 365 | 3 | 323 | 4.34e-135 | 388 |
| MS.gene47526.t1 | AT3G61440 | 54.416 | 351 | 148 | 4 | 24 | 364 | 16 | 364 | 1.54e-128 | 373 |
| MS.gene47526.t1 | AT3G03630 | 58.438 | 320 | 123 | 1 | 44 | 363 | 94 | 403 | 1.05e-122 | 360 |
| MS.gene47526.t1 | AT3G22460 | 64.074 | 270 | 77 | 1 | 97 | 366 | 1 | 250 | 2.69e-119 | 345 |
| MS.gene47526.t1 | AT3G61440 | 58.582 | 268 | 111 | 0 | 97 | 364 | 1 | 268 | 2.67e-110 | 323 |
| MS.gene47526.t1 | AT5G28030 | 62.753 | 247 | 92 | 0 | 45 | 291 | 3 | 249 | 1.83e-104 | 308 |
| MS.gene47526.t1 | AT3G61440 | 53.177 | 299 | 128 | 4 | 24 | 312 | 16 | 312 | 2.49e-103 | 308 |
| MS.gene47526.t1 | AT3G61440 | 57.851 | 242 | 102 | 0 | 123 | 364 | 2 | 243 | 2.52e-97 | 289 |
| MS.gene47526.t1 | AT3G22460 | 70.166 | 181 | 54 | 0 | 49 | 229 | 8 | 188 | 3.13e-93 | 277 |
| MS.gene47526.t1 | AT5G28020 | 60.256 | 234 | 93 | 0 | 129 | 362 | 1 | 234 | 9.46e-91 | 272 |
| MS.gene47526.t1 | AT1G55880 | 27.717 | 368 | 206 | 6 | 39 | 348 | 30 | 395 | 1.87e-40 | 147 |
| MS.gene47526.t1 | AT1G55880 | 27.187 | 320 | 174 | 5 | 39 | 300 | 30 | 348 | 9.42e-35 | 131 |
Find 86 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAACCGGTGGAACTCTTTC+TGG | 0.174287 | 4.3:+25722332 | MS.gene47526:CDS |
| TGCTGCTACAGCTGCATTGC+AGG | 0.226091 | 4.3:+25723075 | MS.gene47526:CDS |
| CACTAACCAGCAAGCCTTCC+TGG | 0.248330 | 4.3:-25722846 | None:intergenic |
| CACATTCTTCTCGAGCTTCC+TGG | 0.248992 | 4.3:-25723434 | None:intergenic |
| CTCGAAAGCAACATACTTTC+AGG | 0.252788 | 4.3:+25722491 | MS.gene47526:CDS |
| TGCTGCAAAGCTTGAGCTTA+TGG | 0.262645 | 4.3:+25721101 | MS.gene47526:CDS |
| GATTTCTTTATCCAAATTCT+TGG | 0.286384 | 4.3:-25722658 | None:intergenic |
| CACACATAATTCAGGGTATT+GGG | 0.300262 | 4.3:+25722622 | MS.gene47526:CDS |
| GTATGCACTTCAGAGTATTT+TGG | 0.302707 | 4.3:+25721980 | MS.gene47526:intron |
| CACAGGACCACACATAATTC+AGG | 0.307785 | 4.3:+25722614 | MS.gene47526:intron |
| AGAGTTCTTATGAAAGCATT+TGG | 0.314655 | 4.3:+25722107 | MS.gene47526:CDS |
| GAGATCATCGTTGCTGGTTT+GGG | 0.333139 | 4.3:-25720899 | None:intergenic |
| ACCTTTAGTAGCTGCTATAA+AGG | 0.342177 | 4.3:-25722039 | None:intergenic |
| CTTTCTAAACTCATTGAAAC+AGG | 0.346381 | 4.3:-25722083 | None:intergenic |
| TTTGTATCTTTCCATATCTC+TGG | 0.353997 | 4.3:-25722278 | None:intergenic |
| TGAGATCATCGTTGCTGGTT+TGG | 0.382543 | 4.3:-25720900 | None:intergenic |
| AGAATACTGGGCCAGAGATA+TGG | 0.384193 | 4.3:+25722267 | MS.gene47526:CDS |
| ACCGGTGGGAACACAGGAAT+TGG | 0.391141 | 4.3:+25722011 | MS.gene47526:CDS |
| AGCCCTTAGTGATACTCTTC+AGG | 0.405705 | 4.3:-25721065 | None:intergenic |
| ACTCATAGCCTTGGAATATT+CGG | 0.408095 | 4.3:-25722147 | None:intergenic |
| AGCACTCCAGGAAGGCTTGC+TGG | 0.419636 | 4.3:+25722840 | MS.gene47526:CDS |
| GTATTCTCATAATGCACCTT+AGG | 0.423127 | 4.3:-25722251 | None:intergenic |
| AATATTGAGATCATCGTTGC+TGG | 0.427113 | 4.3:-25720905 | None:intergenic |
| ATTTCTTTATCCAAATTCTT+GGG | 0.427230 | 4.3:-25722657 | None:intergenic |
| TAATGCACCTTAGGATTTGA+AGG | 0.427650 | 4.3:-25722242 | None:intergenic |
| CATATCTTTCACCGAAGCTT+GGG | 0.435988 | 4.3:-25723395 | None:intergenic |
| TTAGTCTCGGCAATTGGAAC+CGG | 0.448696 | 4.3:+25722317 | MS.gene47526:CDS |
| TCCGACCTCTGTAATATCAT+TGG | 0.450501 | 4.3:-25720929 | None:intergenic |
| TGTTGAAGCATGTATGCATT+AGG | 0.450753 | 4.3:-25722209 | None:intergenic |
| AACTGCTCCACTCATAGCCT+TGG | 0.451930 | 4.3:-25722156 | None:intergenic |
| CAGGTTGTATTCCCAAGCTT+CGG | 0.453220 | 4.3:+25723384 | MS.gene47526:intron |
| GTTTGGGATTCGACAAAGAC+AGG | 0.454308 | 4.3:-25720883 | None:intergenic |
| GCCTTTATAGCAGCTACTAA+AGG | 0.455275 | 4.3:+25722038 | MS.gene47526:CDS |
| ACATATCTTTCACCGAAGCT+TGG | 0.458571 | 4.3:-25723396 | None:intergenic |
| CCACACATAATTCAGGGTAT+TGG | 0.460806 | 4.3:+25722621 | MS.gene47526:CDS |
| GTAAAATTGTTTCATGGCTC+CGG | 0.463120 | 4.3:-25723468 | None:intergenic |
| AAACAGGTGGGAATTTCCTC+AGG | 0.469541 | 4.3:+25723049 | MS.gene47526:intron |
| TGCTTACATGCACAGCTCAT+AGG | 0.475577 | 4.3:+25721024 | MS.gene47526:intron |
| AAGGTGCATTATGAGAATAC+TGG | 0.479612 | 4.3:+25722254 | MS.gene47526:CDS |
| TGATAATCCTTCAAATCCTA+AGG | 0.485123 | 4.3:+25722235 | MS.gene47526:CDS |
| TGCAAGGCAAATAGCACTCC+AGG | 0.497957 | 4.3:+25722828 | MS.gene47526:CDS |
| CGTGCTCGTGCTAGCCCTAT+CGG | 0.500874 | 4.3:+25720823 | MS.gene47526:CDS |
| AGAATGTGAGAAAATGCAAC+CGG | 0.512076 | 4.3:+25723449 | MS.gene47526:CDS |
| AGCTGAAACAGTGGCCGATA+GGG | 0.516653 | 4.3:-25720837 | None:intergenic |
| CAGAAAGGACTCATAACACC+TGG | 0.522023 | 4.3:+25721845 | MS.gene47526:CDS |
| ATAATTCAGGGTATTGGGGC+TGG | 0.523924 | 4.3:+25722627 | MS.gene47526:CDS |
| GCCACTGTTTCAGCTTCACC+AGG | 0.526894 | 4.3:+25720845 | MS.gene47526:CDS |
| TGCTAAGAGACCTGAAAATG+AGG | 0.527044 | 4.3:+25723099 | MS.gene47526:CDS |
| ATAATTCAAAGACTTGACTA+AGG | 0.529624 | 4.3:-25720794 | None:intergenic |
| GTCTCGGCAATTGGAACCGG+TGG | 0.532547 | 4.3:+25722320 | MS.gene47526:CDS |
| GAGATATGGAAAGATACAAA+AGG | 0.534527 | 4.3:+25722281 | MS.gene47526:CDS |
| GGTGGAACTCTTTCTGGAGC+TGG | 0.534617 | 4.3:+25722338 | MS.gene47526:CDS |
| CATGTTGCAGTGTCAAAGAC+AGG | 0.537458 | 4.3:+25721127 | MS.gene47526:CDS |
| AAGCTGAAACAGTGGCCGAT+AGG | 0.543113 | 4.3:-25720838 | None:intergenic |
| AGGGGAAGATGAAAAGATCC+TGG | 0.543787 | 4.3:-25720863 | None:intergenic |
| TGTTATGAGTCCTTTCTGCT+CGG | 0.547510 | 4.3:-25721840 | None:intergenic |
| AGCTCCAGAAAGAGTTCCAC+CGG | 0.558578 | 4.3:-25722336 | None:intergenic |
| AGGTGCATTATGAGAATACT+GGG | 0.564800 | 4.3:+25722255 | MS.gene47526:CDS |
| ACAGGACCACACATAATTCA+GGG | 0.566612 | 4.3:+25722615 | MS.gene47526:intron |
| ACCAATTCCTGTGTTCCCAC+CGG | 0.567362 | 4.3:-25722012 | None:intergenic |
| TTACCTGAAGAGTATCACTA+AGG | 0.569604 | 4.3:+25721062 | MS.gene47526:CDS |
| ATTCTTGATGCCGAGCAGAA+AGG | 0.581925 | 4.3:+25721830 | MS.gene47526:CDS |
| GAACCTACCGGTGGGAACAC+AGG | 0.590747 | 4.3:+25722005 | MS.gene47526:CDS |
| CTACGTATCAATCAGTGCAT+CGG | 0.594890 | 4.3:+25722458 | MS.gene47526:intron |
| ATACTCTTCAGGTAAACCAT+TGG | 0.603385 | 4.3:-25721054 | None:intergenic |
| AGGACTCATAACACCTGGGA+AGG | 0.604876 | 4.3:+25721850 | MS.gene47526:CDS |
| GAAAGTATGTTGCTTTCGAG+AGG | 0.608190 | 4.3:-25722488 | None:intergenic |
| ACACATAATTCAGGGTATTG+GGG | 0.608497 | 4.3:+25722623 | MS.gene47526:CDS |
| TCCTGGTGAAGCTGAAACAG+TGG | 0.613084 | 4.3:-25720846 | None:intergenic |
| CTGTCTTTGACACTGCAACA+TGG | 0.615946 | 4.3:-25721126 | None:intergenic |
| GCTAAGAGACCTGAAAATGA+GGG | 0.619429 | 4.3:+25723100 | MS.gene47526:CDS |
| TACCTGAAGAGTATCACTAA+GGG | 0.627372 | 4.3:+25721063 | MS.gene47526:CDS |
| GAATATTCCAAGGCTATGAG+TGG | 0.632482 | 4.3:+25722149 | MS.gene47526:CDS |
| AGACCGCTATAACTTCATCA+AGG | 0.636275 | 4.3:-25722680 | None:intergenic |
| TTTGGGATTCGACAAAGACA+GGG | 0.636572 | 4.3:-25720882 | None:intergenic |
| AAGAATCTGTCAAAACTGCA+AGG | 0.645155 | 4.3:+25722812 | MS.gene47526:CDS |
| ATTCCTGTGTTCCCACCGGT+AGG | 0.651234 | 4.3:-25722008 | None:intergenic |
| GAAAGCAACATACTTTCAGG+TGG | 0.653711 | 4.3:+25722494 | MS.gene47526:CDS |
| AAATGAGGGAAAGCTTATTG+TGG | 0.653863 | 4.3:+25723114 | MS.gene47526:CDS |
| AGCTGTAGCAGCACAACCTG+AGG | 0.655976 | 4.3:-25723065 | None:intergenic |
| AATCCTTGATGAAGTTATAG+CGG | 0.663239 | 4.3:+25722677 | MS.gene47526:CDS |
| AGGCAAATAGCACTCCAGGA+AGG | 0.669487 | 4.3:+25722832 | MS.gene47526:CDS |
| CCAATACCCTGAATTATGTG+TGG | 0.679263 | 4.3:-25722621 | None:intergenic |
| TTGGGATTCGACAAAGACAG+GGG | 0.685650 | 4.3:-25720881 | None:intergenic |
| AGAAAGGACTCATAACACCT+GGG | 0.699620 | 4.3:+25721846 | MS.gene47526:CDS |
| TATTGCCAATGATATTACAG+AGG | 0.723357 | 4.3:+25720924 | MS.gene47526:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTATGCTTTAATATA+TGG | - | chr4.3:25722951-25722970 | None:intergenic | 10.0% |
| !! | CTATTATTAGTATAAAAATA+TGG | - | chr4.3:25721448-25721467 | None:intergenic | 10.0% |
| !! | TAAAAAAAATTACTTATGTA+AGG | + | chr4.3:25723154-25723173 | MS.gene47526:intron | 10.0% |
| !!! | ATAAGTAATTTTTTTTAATG+CGG | - | chr4.3:25723151-25723170 | None:intergenic | 10.0% |
| !! | AACTTATTATATTTCTTACT+TGG | - | chr4.3:25722524-25722543 | None:intergenic | 15.0% |
| !! | ATAATAGTAGTAGATAATTT+CGG | + | chr4.3:25721461-25721480 | MS.gene47526:intron | 15.0% |
| !! | ATTAAAGCATAATTAATGAA+GGG | + | chr4.3:25722954-25722973 | MS.gene47526:intron | 15.0% |
| !! | CAATAAATAAAAAAATTGTG+AGG | - | chr4.3:25723364-25723383 | None:intergenic | 15.0% |
| !! | TAGAATATAAACCTTAAATT+TGG | + | chr4.3:25721359-25721378 | MS.gene47526:intron | 15.0% |
| !! | TATTAAAGCATAATTAATGA+AGG | + | chr4.3:25722953-25722972 | MS.gene47526:intron | 15.0% |
| !!! | ACAATTTTTTTATTTATTGC+AGG | + | chr4.3:25723365-25723384 | MS.gene47526:intron | 15.0% |
| !!! | TTCTTTCTTTTTAAACATTT+TGG | + | chr4.3:25721183-25721202 | MS.gene47526:intron | 15.0% |
| !! | ACAACAAAATCCAAAAATAA+AGG | + | chr4.3:25722373-25722392 | MS.gene47526:CDS | 20.0% |
| !! | ATATCAGCTAATTAATTGTA+AGG | - | chr4.3:25721584-25721603 | None:intergenic | 20.0% |
| !! | ATTTCTTTATCCAAATTCTT+GGG | - | chr4.3:25722660-25722679 | None:intergenic | 20.0% |
| !! | GTAGAGAATAAAATGTTAAA+TGG | - | chr4.3:25722442-25722461 | None:intergenic | 20.0% |
| !! | TTTGTTTCATTTCTATTTGT+TGG | + | chr4.3:25721229-25721248 | MS.gene47526:intron | 20.0% |
| !!! | GAATGATTTACCTTTATTTT+TGG | - | chr4.3:25722386-25722405 | None:intergenic | 20.0% |
| !!! | TTATTTTATTGTTTCTGCTT+TGG | + | chr4.3:25721781-25721800 | MS.gene47526:intron | 20.0% |
| !!! | TTTAATGTGAACTTTAAGAT+TGG | - | chr4.3:25721336-25721355 | None:intergenic | 20.0% |
| !!! | TTTTTGGATTTTGTTGTTTT+AGG | - | chr4.3:25722370-25722389 | None:intergenic | 20.0% |
| ! | ATAACAGAATATGATCAGAT+TGG | - | chr4.3:25723246-25723265 | None:intergenic | 25.0% |
| ! | ATAATTCAAAGACTTGACTA+AGG | - | chr4.3:25720797-25720816 | None:intergenic | 25.0% |
| ! | ATCAGATAAAAGCTCTTTAA+AGG | - | chr4.3:25722576-25722595 | None:intergenic | 25.0% |
| ! | ATTTCGGCTAAATAATTGTA+AGG | + | chr4.3:25721477-25721496 | MS.gene47526:intron | 25.0% |
| ! | GATTAATCAGAATAATGCAT+TGG | - | chr4.3:25722739-25722758 | None:intergenic | 25.0% |
| ! | GATTGTTAATTACTTGTTTC+TGG | + | chr4.3:25721958-25721977 | MS.gene47526:intron | 25.0% |
| ! | GATTTCTTTATCCAAATTCT+TGG | - | chr4.3:25722661-25722680 | None:intergenic | 25.0% |
| ! | TGGTATCAATGATGTTATAT+CGG | + | chr4.3:25721515-25721534 | MS.gene47526:intron | 25.0% |
| ! | TTGTAAGGAATAAATGTTGT+TGG | + | chr4.3:25721492-25721511 | MS.gene47526:intron | 25.0% |
| ! | TTTACCTAAATTCTTACCAT+TGG | + | chr4.3:25723025-25723044 | MS.gene47526:intron | 25.0% |
| ! | TTTGTATCTTGATTAACTGT+TGG | + | chr4.3:25722987-25723006 | MS.gene47526:intron | 25.0% |
| !! | TTTTCCAATGGTAAGAATTT+AGG | - | chr4.3:25723032-25723051 | None:intergenic | 25.0% |
| !!! | TCTTTTTTATATACCATCCA+AGG | - | chr4.3:25723195-25723214 | None:intergenic | 25.0% |
| AATCCTTGATGAAGTTATAG+CGG | + | chr4.3:25722677-25722696 | MS.gene47526:CDS | 30.0% | |
| AATTCTTACCATTGGAAAAC+AGG | + | chr4.3:25723033-25723052 | MS.gene47526:intron | 30.0% | |
| AGGAAATAACATATCAGACT+TGG | - | chr4.3:25722556-25722575 | None:intergenic | 30.0% | |
| CACTTGTATGCAAATTTATG+TGG | - | chr4.3:25721724-25721743 | None:intergenic | 30.0% | |
| CTTTCTAAACTCATTGAAAC+AGG | - | chr4.3:25722086-25722105 | None:intergenic | 30.0% | |
| GAGATATGGAAAGATACAAA+AGG | + | chr4.3:25722281-25722300 | MS.gene47526:CDS | 30.0% | |
| TAAATGGAAATCAACAAGCT+AGG | - | chr4.3:25722426-25722445 | None:intergenic | 30.0% | |
| TAAGGAATAAATGTTGTTGG+TGG | + | chr4.3:25721495-25721514 | MS.gene47526:intron | 30.0% | |
| TATTGCCAATGATATTACAG+AGG | + | chr4.3:25720924-25720943 | MS.gene47526:CDS | 30.0% | |
| TGATAATCCTTCAAATCCTA+AGG | + | chr4.3:25722235-25722254 | MS.gene47526:CDS | 30.0% | |
| TTTAATTAATCCACCTTGGA+TGG | + | chr4.3:25723179-25723198 | MS.gene47526:intron | 30.0% | |
| TTTGTATCTTTCCATATCTC+TGG | - | chr4.3:25722281-25722300 | None:intergenic | 30.0% | |
| ! | TAGTCAATGGGTGATATTTT+TGG | + | chr4.3:25721259-25721278 | MS.gene47526:intron | 30.0% |
| ! | TTTTTATATACCATCCAAGG+TGG | - | chr4.3:25723192-25723211 | None:intergenic | 30.0% |
| !! | AGAGTTCTTATGAAAGCATT+TGG | + | chr4.3:25722107-25722126 | MS.gene47526:CDS | 30.0% |
| !! | CAAAGTAGACATTTTAGTCT+CGG | + | chr4.3:25722304-25722323 | MS.gene47526:CDS | 30.0% |
| !!! | ATTTTTTCCTGCTAAATCAC+AGG | + | chr4.3:25722597-25722616 | MS.gene47526:intron | 30.0% |
| AAATGAGGGAAAGCTTATTG+TGG | + | chr4.3:25723114-25723133 | MS.gene47526:CDS | 35.0% | |
| AAGAATCTGTCAAAACTGCA+AGG | + | chr4.3:25722812-25722831 | MS.gene47526:CDS | 35.0% | |
| AAGGTGCATTATGAGAATAC+TGG | + | chr4.3:25722254-25722273 | MS.gene47526:CDS | 35.0% | |
| AATATTGAGATCATCGTTGC+TGG | - | chr4.3:25720908-25720927 | None:intergenic | 35.0% | |
| ACCTTTAGTAGCTGCTATAA+AGG | - | chr4.3:25722042-25722061 | None:intergenic | 35.0% | |
| AGAATGTGAGAAAATGCAAC+CGG | + | chr4.3:25723449-25723468 | MS.gene47526:CDS | 35.0% | |
| AGGTGCATTATGAGAATACT+GGG | + | chr4.3:25722255-25722274 | MS.gene47526:CDS | 35.0% | |
| ATACTCTTCAGGTAAACCAT+TGG | - | chr4.3:25721057-25721076 | None:intergenic | 35.0% | |
| GATAAGACGGTCCAAATTTA+AGG | - | chr4.3:25721373-25721392 | None:intergenic | 35.0% | |
| GCATGTAAGCAGCAAAAAAA+AGG | - | chr4.3:25721015-25721034 | None:intergenic | 35.0% | |
| GGAGTTTAATTAATCCACCT+TGG | + | chr4.3:25723175-25723194 | MS.gene47526:intron | 35.0% | |
| GTATTCTCATAATGCACCTT+AGG | - | chr4.3:25722254-25722273 | None:intergenic | 35.0% | |
| GTTGGTTAGTGTTAGTCAAT+GGG | + | chr4.3:25721247-25721266 | MS.gene47526:intron | 35.0% | |
| TAATGCACCTTAGGATTTGA+AGG | - | chr4.3:25722245-25722264 | None:intergenic | 35.0% | |
| TGTTGAAGCATGTATGCATT+AGG | - | chr4.3:25722212-25722231 | None:intergenic | 35.0% | |
| TTTCTTGCAATTGACAACAC+TGG | + | chr4.3:25721681-25721700 | MS.gene47526:intron | 35.0% | |
| ! | AATATGATCAGATTGGCTGA+AGG | - | chr4.3:25723239-25723258 | None:intergenic | 35.0% |
| ! | ACTCATAGCCTTGGAATATT+CGG | - | chr4.3:25722150-25722169 | None:intergenic | 35.0% |
| ! | ATAAGCTTTCCCTCATTTTC+AGG | - | chr4.3:25723112-25723131 | None:intergenic | 35.0% |
| ! | ATATGATCAGATTGGCTGAA+GGG | - | chr4.3:25723238-25723257 | None:intergenic | 35.0% |
| ! | CACACATAATTCAGGGTATT+GGG | + | chr4.3:25722622-25722641 | MS.gene47526:CDS | 35.0% |
| ! | TGTTGGTTAGTGTTAGTCAA+TGG | + | chr4.3:25721246-25721265 | MS.gene47526:intron | 35.0% |
| !! | ACACATAATTCAGGGTATTG+GGG | + | chr4.3:25722623-25722642 | MS.gene47526:CDS | 35.0% |
| !! | GTATGCACTTCAGAGTATTT+TGG | + | chr4.3:25721980-25721999 | MS.gene47526:intron | 35.0% |
| !! | TACCTGAAGAGTATCACTAA+GGG | + | chr4.3:25721063-25721082 | MS.gene47526:CDS | 35.0% |
| !! | TTACCTGAAGAGTATCACTA+AGG | + | chr4.3:25721062-25721081 | MS.gene47526:CDS | 35.0% |
| !!! | AGTATTTTGGTAGAACCTAC+CGG | + | chr4.3:25721993-25722012 | MS.gene47526:CDS | 35.0% |
| !!! | TGTTTTGACCGAATATTCCA+AGG | + | chr4.3:25722139-25722158 | MS.gene47526:CDS | 35.0% |
| ACAGGACCACACATAATTCA+GGG | + | chr4.3:25722615-25722634 | MS.gene47526:intron | 40.0% | |
| ACATATCTTTCACCGAAGCT+TGG | - | chr4.3:25723399-25723418 | None:intergenic | 40.0% | |
| ACCGTCTGGTTAAGATAAGA+CGG | - | chr4.3:25721386-25721405 | None:intergenic | 40.0% | |
| ACCGTCTTATCTTAACCAGA+CGG | + | chr4.3:25721382-25721401 | MS.gene47526:intron | 40.0% | |
| AGAAAGGACTCATAACACCT+GGG | + | chr4.3:25721846-25721865 | MS.gene47526:CDS | 40.0% | |
| AGACCGCTATAACTTCATCA+AGG | - | chr4.3:25722683-25722702 | None:intergenic | 40.0% | |
| ATGCTATAACCTATCCTGCA+AGG | - | chr4.3:25721809-25721828 | None:intergenic | 40.0% | |
| CATATCTTTCACCGAAGCTT+GGG | - | chr4.3:25723398-25723417 | None:intergenic | 40.0% | |
| CCAATACCCTGAATTATGTG+TGG | - | chr4.3:25722624-25722643 | None:intergenic | 40.0% | |
| CCACACATAATTCAGGGTAT+TGG | + | chr4.3:25722621-25722640 | MS.gene47526:CDS | 40.0% | |
| CTACGTATCAATCAGTGCAT+CGG | + | chr4.3:25722458-25722477 | MS.gene47526:intron | 40.0% | |
| CTCGAAAGCAACATACTTTC+AGG | + | chr4.3:25722491-25722510 | MS.gene47526:CDS | 40.0% | |
| CTTACCATTGGAAAACAGGT+GGG | + | chr4.3:25723037-25723056 | MS.gene47526:intron | 40.0% | |
| GAAAGCAACATACTTTCAGG+TGG | + | chr4.3:25722494-25722513 | MS.gene47526:CDS | 40.0% | |
| GAATATTCCAAGGCTATGAG+TGG | + | chr4.3:25722149-25722168 | MS.gene47526:CDS | 40.0% | |
| GCCAATGATATTACAGAGGT+CGG | + | chr4.3:25720928-25720947 | MS.gene47526:intron | 40.0% | |
| GCCTTTATAGCAGCTACTAA+AGG | + | chr4.3:25722038-25722057 | MS.gene47526:CDS | 40.0% | |
| GCTAAGAGACCTGAAAATGA+GGG | + | chr4.3:25723100-25723119 | MS.gene47526:CDS | 40.0% | |
| GCTATAGCGTTATAGCATAG+CGG | + | chr4.3:25721537-25721556 | MS.gene47526:intron | 40.0% | |
| TACGCTACAATGCTAAGCAA+TGG | - | chr4.3:25721611-25721630 | None:intergenic | 40.0% | |
| TCCGACCTCTGTAATATCAT+TGG | - | chr4.3:25720932-25720951 | None:intergenic | 40.0% | |
| TCTTACCATTGGAAAACAGG+TGG | + | chr4.3:25723036-25723055 | MS.gene47526:intron | 40.0% | |
| TGCTAAGAGACCTGAAAATG+AGG | + | chr4.3:25723099-25723118 | MS.gene47526:CDS | 40.0% | |
| TGTTATGAGTCCTTTCTGCT+CGG | - | chr4.3:25721843-25721862 | None:intergenic | 40.0% | |
| TTGCAATTGACAACACTGGT+TGG | + | chr4.3:25721685-25721704 | MS.gene47526:intron | 40.0% | |
| ! | AATTCCCACCTGTTTTCCAA+TGG | - | chr4.3:25723044-25723063 | None:intergenic | 40.0% |
| ! | CTTTCGTATTTTACCTTCCC+AGG | - | chr4.3:25721866-25721885 | None:intergenic | 40.0% |
| ! | CTTTTCTGATTGTCTGCATG+TGG | + | chr4.3:25722767-25722786 | MS.gene47526:intron | 40.0% |
| ! | TGGCAACTTTTGCAGATATC+CGG | + | chr4.3:25722787-25722806 | MS.gene47526:intron | 40.0% |
| ! | TGTGTCTACTTCTCTTTTCC+AGG | + | chr4.3:25723416-25723435 | MS.gene47526:CDS | 40.0% |
| ! | TTTGGGATTCGACAAAGACA+GGG | - | chr4.3:25720885-25720904 | None:intergenic | 40.0% |
| !! | AGTTTTGACAGATTCTTCGC+CGG | - | chr4.3:25722809-25722828 | None:intergenic | 40.0% |
| !! | GAAAGTATGTTGCTTTCGAG+AGG | - | chr4.3:25722491-25722510 | None:intergenic | 40.0% |
| !! | GACATTTTAGTCTCGGCAAT+TGG | + | chr4.3:25722311-25722330 | MS.gene47526:CDS | 40.0% |
| !!! | TGGTTTTGTGCCCAAGAATT+TGG | + | chr4.3:25722647-25722666 | MS.gene47526:CDS | 40.0% |
| AAACAGGTGGGAATTTCCTC+AGG | + | chr4.3:25723049-25723068 | MS.gene47526:intron | 45.0% | |
| AGAATACTGGGCCAGAGATA+TGG | + | chr4.3:25722267-25722286 | MS.gene47526:CDS | 45.0% | |
| AGCCCTTAGTGATACTCTTC+AGG | - | chr4.3:25721068-25721087 | None:intergenic | 45.0% | |
| AGGGGAAGATGAAAAGATCC+TGG | - | chr4.3:25720866-25720885 | None:intergenic | 45.0% | |
| ATTCTTGATGCCGAGCAGAA+AGG | + | chr4.3:25721830-25721849 | MS.gene47526:CDS | 45.0% | |
| CACAGGACCACACATAATTC+AGG | + | chr4.3:25722614-25722633 | MS.gene47526:intron | 45.0% | |
| CAGAAAGGACTCATAACACC+TGG | + | chr4.3:25721845-25721864 | MS.gene47526:CDS | 45.0% | |
| CAGGTTGTATTCCCAAGCTT+CGG | + | chr4.3:25723384-25723403 | MS.gene47526:intron | 45.0% | |
| CATGTTGCAGTGTCAAAGAC+AGG | + | chr4.3:25721127-25721146 | MS.gene47526:CDS | 45.0% | |
| CTGTCTTTGACACTGCAACA+TGG | - | chr4.3:25721129-25721148 | None:intergenic | 45.0% | |
| GCTCATAGGAAAAACGCCAA+TGG | + | chr4.3:25721038-25721057 | MS.gene47526:intron | 45.0% | |
| TATGCATGACTGCATGTCCT+CGG | - | chr4.3:25721288-25721307 | None:intergenic | 45.0% | |
| TGCTGCAAAGCTTGAGCTTA+TGG | + | chr4.3:25721101-25721120 | MS.gene47526:CDS | 45.0% | |
| TGCTTACATGCACAGCTCAT+AGG | + | chr4.3:25721024-25721043 | MS.gene47526:intron | 45.0% | |
| TTAGTCTCGGCAATTGGAAC+CGG | + | chr4.3:25722317-25722336 | MS.gene47526:CDS | 45.0% | |
| TTGCAGTGTCAAAGACAGGT+AGG | + | chr4.3:25721131-25721150 | MS.gene47526:intron | 45.0% | |
| TTGGGATTCGACAAAGACAG+GGG | - | chr4.3:25720884-25720903 | None:intergenic | 45.0% | |
| ! | GTTTGGGATTCGACAAAGAC+AGG | - | chr4.3:25720886-25720905 | None:intergenic | 45.0% |
| ! | TGAGATCATCGTTGCTGGTT+TGG | - | chr4.3:25720903-25720922 | None:intergenic | 45.0% |
| ! | TTTCTGCTTTGGTTCCTTGC+AGG | + | chr4.3:25721792-25721811 | MS.gene47526:intron | 45.0% |
| ! | TTTTGGTAGAACCTACCGGT+GGG | + | chr4.3:25721997-25722016 | MS.gene47526:CDS | 45.0% |
| !! | ATAATTCAGGGTATTGGGGC+TGG | + | chr4.3:25722627-25722646 | MS.gene47526:CDS | 45.0% |
| !! | ATTTTGGTAGAACCTACCGG+TGG | + | chr4.3:25721996-25722015 | MS.gene47526:CDS | 45.0% |
| !! | GAGATCATCGTTGCTGGTTT+GGG | - | chr4.3:25720902-25720921 | None:intergenic | 45.0% |
| !!! | GGTGATATTTTTGGATCCCG+AGG | + | chr4.3:25721268-25721287 | MS.gene47526:intron | 45.0% |
| !! | TATTATTAGTATAAAAATAT+GGG | - | chr4.3:25721447-25721466 | None:intergenic | 5.0% |
| AACTGCTCCACTCATAGCCT+TGG | - | chr4.3:25722159-25722178 | None:intergenic | 50.0% | |
| AAGCTGAAACAGTGGCCGAT+AGG | - | chr4.3:25720841-25720860 | None:intergenic | 50.0% | |
| ACCAATTCCTGTGTTCCCAC+CGG | - | chr4.3:25722015-25722034 | None:intergenic | 50.0% | |
| AGCTCCAGAAAGAGTTCCAC+CGG | - | chr4.3:25722339-25722358 | None:intergenic | 50.0% | |
| AGCTGAAACAGTGGCCGATA+GGG | - | chr4.3:25720840-25720859 | None:intergenic | 50.0% | |
| AGGACTCATAACACCTGGGA+AGG | + | chr4.3:25721850-25721869 | MS.gene47526:CDS | 50.0% | |
| AGGCAAATAGCACTCCAGGA+AGG | + | chr4.3:25722832-25722851 | MS.gene47526:CDS | 50.0% | |
| ATGCATGACTGCATGTCCTC+GGG | - | chr4.3:25721287-25721306 | None:intergenic | 50.0% | |
| CACATTCTTCTCGAGCTTCC+TGG | - | chr4.3:25723437-25723456 | None:intergenic | 50.0% | |
| GTGTGGTCCTGTGATTTAGC+AGG | - | chr4.3:25722607-25722626 | None:intergenic | 50.0% | |
| TCCTGGTGAAGCTGAAACAG+TGG | - | chr4.3:25720849-25720868 | None:intergenic | 50.0% | |
| TGCAAGGCAAATAGCACTCC+AGG | + | chr4.3:25722828-25722847 | MS.gene47526:CDS | 50.0% | |
| ! | GCTTTGGTTCCTTGCAGGAT+AGG | + | chr4.3:25721797-25721816 | MS.gene47526:intron | 50.0% |
| ACCGGTGGGAACACAGGAAT+TGG | + | chr4.3:25722011-25722030 | MS.gene47526:CDS | 55.0% | |
| AGCTGTAGCAGCACAACCTG+AGG | - | chr4.3:25723068-25723087 | None:intergenic | 55.0% | |
| ATGCATGCAGTCCTGCCTTC+TGG | - | chr4.3:25721418-25721437 | None:intergenic | 55.0% | |
| ATTCCTGTGTTCCCACCGGT+AGG | - | chr4.3:25722011-25722030 | None:intergenic | 55.0% | |
| CACTAACCAGCAAGCCTTCC+TGG | - | chr4.3:25722849-25722868 | None:intergenic | 55.0% | |
| GACGGTGAGATCTGTCCAGA+AGG | + | chr4.3:25721400-25721419 | MS.gene47526:intron | 55.0% | |
| GCCACTGTTTCAGCTTCACC+AGG | + | chr4.3:25720845-25720864 | MS.gene47526:CDS | 55.0% | |
| GGAACCGGTGGAACTCTTTC+TGG | + | chr4.3:25722332-25722351 | MS.gene47526:CDS | 55.0% | |
| GTGAGATCTGTCCAGAAGGC+AGG | + | chr4.3:25721404-25721423 | MS.gene47526:intron | 55.0% | |
| TCTGGACAGATCTCACCGTC+TGG | - | chr4.3:25721400-25721419 | None:intergenic | 55.0% | |
| TGCTGCTACAGCTGCATTGC+AGG | + | chr4.3:25723075-25723094 | MS.gene47526:CDS | 55.0% | |
| !! | GGTGGAACTCTTTCTGGAGC+TGG | + | chr4.3:25722338-25722357 | MS.gene47526:CDS | 55.0% |
| AGCACTCCAGGAAGGCTTGC+TGG | + | chr4.3:25722840-25722859 | MS.gene47526:CDS | 60.0% | |
| CGTGCTCGTGCTAGCCCTAT+CGG | + | chr4.3:25720823-25720842 | MS.gene47526:CDS | 60.0% | |
| GAACCTACCGGTGGGAACAC+AGG | + | chr4.3:25722005-25722024 | MS.gene47526:CDS | 60.0% | |
| GTCTCGGCAATTGGAACCGG+TGG | + | chr4.3:25722320-25722339 | MS.gene47526:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 25720781 | 25723479 | 25720781 | ID=MS.gene47526 |
| chr4.3 | mRNA | 25720781 | 25723479 | 25720781 | ID=MS.gene47526.t1;Parent=MS.gene47526 |
| chr4.3 | exon | 25720781 | 25720945 | 25720781 | ID=MS.gene47526.t1.exon1;Parent=MS.gene47526.t1 |
| chr4.3 | CDS | 25720781 | 25720945 | 25720781 | ID=cds.MS.gene47526.t1;Parent=MS.gene47526.t1 |
| chr4.3 | exon | 25721039 | 25721148 | 25721039 | ID=MS.gene47526.t1.exon2;Parent=MS.gene47526.t1 |
| chr4.3 | CDS | 25721039 | 25721148 | 25721039 | ID=cds.MS.gene47526.t1;Parent=MS.gene47526.t1 |
| chr4.3 | exon | 25721814 | 25721871 | 25721814 | ID=MS.gene47526.t1.exon3;Parent=MS.gene47526.t1 |
| chr4.3 | CDS | 25721814 | 25721871 | 25721814 | ID=cds.MS.gene47526.t1;Parent=MS.gene47526.t1 |
| chr4.3 | exon | 25721993 | 25722394 | 25721993 | ID=MS.gene47526.t1.exon4;Parent=MS.gene47526.t1 |
| chr4.3 | CDS | 25721993 | 25722394 | 25721993 | ID=cds.MS.gene47526.t1;Parent=MS.gene47526.t1 |
| chr4.3 | exon | 25722473 | 25722524 | 25722473 | ID=MS.gene47526.t1.exon5;Parent=MS.gene47526.t1 |
| chr4.3 | CDS | 25722473 | 25722524 | 25722473 | ID=cds.MS.gene47526.t1;Parent=MS.gene47526.t1 |
| chr4.3 | exon | 25722619 | 25722698 | 25722619 | ID=MS.gene47526.t1.exon6;Parent=MS.gene47526.t1 |
| chr4.3 | CDS | 25722619 | 25722698 | 25722619 | ID=cds.MS.gene47526.t1;Parent=MS.gene47526.t1 |
| chr4.3 | exon | 25722802 | 25722861 | 25722802 | ID=MS.gene47526.t1.exon7;Parent=MS.gene47526.t1 |
| chr4.3 | CDS | 25722802 | 25722861 | 25722802 | ID=cds.MS.gene47526.t1;Parent=MS.gene47526.t1 |
| chr4.3 | exon | 25723055 | 25723135 | 25723055 | ID=MS.gene47526.t1.exon8;Parent=MS.gene47526.t1 |
| chr4.3 | CDS | 25723055 | 25723135 | 25723055 | ID=cds.MS.gene47526.t1;Parent=MS.gene47526.t1 |
| chr4.3 | exon | 25723387 | 25723479 | 25723387 | ID=MS.gene47526.t1.exon9;Parent=MS.gene47526.t1 |
| chr4.3 | CDS | 25723387 | 25723479 | 25723387 | ID=cds.MS.gene47526.t1;Parent=MS.gene47526.t1 |
| Gene Sequence |
| Protein sequence |
