AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052606


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052606.t1 MTR_3g075120 87.798 336 14 2 127 435 205 540 0.0 583
MS.gene052606.t1 MTR_3g075120 85.185 162 24 0 1 162 1 162 2.44e-85 271
MS.gene052606.t1 MTR_3g094320 41.322 363 163 4 121 434 222 583 4.64e-91 288
MS.gene052606.t1 MTR_3g094320 51.825 137 45 3 25 140 28 164 1.79e-33 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052606.t1 AT5G50300 60.802 324 101 2 127 425 221 543 4.09e-127 379
MS.gene052606.t1 AT5G50300 56.774 155 62 1 13 162 24 178 7.19e-48 172
MS.gene052606.t1 AT5G50300 60.802 324 101 2 127 425 204 526 5.26e-127 378
MS.gene052606.t1 AT5G50300 56.774 155 62 1 13 162 7 161 5.04e-48 172
MS.gene052606.t1 AT3G10960 42.969 384 164 5 98 432 202 579 1.18e-99 309
MS.gene052606.t1 AT3G10960 46.154 143 56 3 19 140 19 161 9.45e-31 125

Find 113 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAGCAAGCCCCAGTTTC+TGG 0.095177 3.3:+64779801 None:intergenic
AACCAAGGTGTTGGGCTTAT+TGG 0.202923 3.3:-64779873 MS.gene052606:intron
GTTTGTAACGGCGTTGTTTA+TGG 0.215211 3.3:+64780445 None:intergenic
GTTAAAGGTAGTATGATTTA+TGG 0.226860 3.3:-64779702 MS.gene052606:CDS
TGGGCCTGATCCGGCTAATT+TGG 0.234839 3.3:-64779853 MS.gene052606:CDS
AAGTTCTGGCTTGGAGCTTT+TGG 0.263465 3.3:-64779759 MS.gene052606:CDS
ACCAAGGTGTTGGGCTTATT+GGG 0.273447 3.3:-64779872 MS.gene052606:intron
CCCAGAAACTGGGGCTTGCT+TGG 0.280194 3.3:-64779802 MS.gene052606:CDS
AAAAGTATCGACCCAGAAAC+TGG 0.321079 3.3:-64779813 MS.gene052606:CDS
AGTTGCAAAGCCCAAAGTTC+TGG 0.334679 3.3:-64779773 MS.gene052606:CDS
AAGCTCCAAGCCAGAACTTT+GGG 0.337032 3.3:+64779763 None:intergenic
ACTATTGTAGGGTCAGCTTT+AGG 0.337994 3.3:-64779363 MS.gene052606:CDS
ATGCTGCAAGCATCATAAAT+TGG 0.340022 3.3:-64779011 MS.gene052606:CDS
GGTGAGTTTGTGGATGAAAA+AGG 0.348399 3.3:-64779432 MS.gene052606:CDS
AAACTTTGAAGGTGAATATA+TGG 0.351162 3.3:-64779409 MS.gene052606:CDS
GGTTTAATGAAGAATGTTAA+AGG 0.354466 3.3:-64779717 MS.gene052606:CDS
GTCCTTCACTAGTGATGGTT+GGG 0.368109 3.3:-64779191 MS.gene052606:CDS
ATGAGAGAGGGTGGTAGGAC+AGG 0.368223 3.3:-64779300 MS.gene052606:CDS
TCTTTGTGACATTTGTGTCT+TGG 0.380620 3.3:-64779674 MS.gene052606:CDS
CCAAGCAAGCCCCAGTTTCT+GGG 0.387318 3.3:+64779802 None:intergenic
GGATTAACGGCTGTGATCAT+TGG 0.387358 3.3:-64779279 MS.gene052606:CDS
ATAGCAAATGGTATTGTTGC+TGG 0.390897 3.3:-64779069 MS.gene052606:CDS
TACAACAACTGCAACATTTG+TGG 0.398363 3.3:-64779337 MS.gene052606:CDS
TTTGCTATGGAATAAGTTAG+AGG 0.398585 3.3:+64779084 None:intergenic
GATGCAGCTGGTACTATTGT+AGG 0.399262 3.3:-64779375 MS.gene052606:CDS
CCAGAAACTGGGGCTTGCTT+GGG 0.399883 3.3:-64779801 MS.gene052606:CDS
TGTTGTCAAGTGTTCCTCCA+TGG 0.400237 3.3:-64779221 MS.gene052606:CDS
AATGGTATTGTTGCTGGTAT+TGG 0.400571 3.3:-64779063 MS.gene052606:CDS
AGGTTCCGCCTGAGCCGGTT+AGG 0.405081 3.3:+64780303 None:intergenic
GGCTGAGATTGGTGAGTTTG+TGG 0.411324 3.3:-64779442 MS.gene052606:CDS
AAAGCTCCAAGCCAGAACTT+TGG 0.419444 3.3:+64779762 None:intergenic
GCAAGCATCATAAATTGGTT+GGG 0.419855 3.3:-64779006 MS.gene052606:CDS
ATGGTTTCTTCTGTTGCAAT+GGG 0.423017 3.3:-64780158 MS.gene052606:CDS
GTTGTCAAGTGTTCCTCCAT+GGG 0.424101 3.3:-64779220 MS.gene052606:CDS
TTCAAGTTAACCAAGGTGTT+GGG 0.433354 3.3:-64779881 MS.gene052606:intron
CAAGCTTCATATCCAGCATT+AGG 0.435994 3.3:+64780230 None:intergenic
GAGGAACACTTGACAACAAA+GGG 0.436205 3.3:+64779226 None:intergenic
GGTTAGGATGGTTGCGTTGA+CGG 0.441711 3.3:+64780319 None:intergenic
CAAAGCCCAAAGTTCTGGCT+TGG 0.453258 3.3:-64779768 MS.gene052606:CDS
GACTGGTATAATGTATACTA+TGG 0.460238 3.3:-64779463 MS.gene052606:CDS
TATGGTTTCTTCTGTTGCAA+TGG 0.464732 3.3:-64780159 MS.gene052606:CDS
TCTTTGTTGTAACTTGAAGT+AGG 0.472333 3.3:+64780409 None:intergenic
GTAACCAAATTAGCCGGATC+AGG 0.472560 3.3:+64779849 None:intergenic
TGCAACTTCTGTAACTGCTA+TGG 0.474498 3.3:-64780177 MS.gene052606:CDS
GGGTGGTAGGACAGGATTAA+CGG 0.474590 3.3:-64779292 MS.gene052606:CDS
AAGGGAAGTTTGGGAGGCAT+TGG 0.475987 3.3:-64779517 MS.gene052606:CDS
GTGTCGGCCACTGCAACAAC+AGG 0.478730 3.3:-64778946 MS.gene052606:CDS
CTAACTTATTCCATAGCAAA+TGG 0.481739 3.3:-64779081 MS.gene052606:CDS
TGCAAGCATCATAAATTGGT+TGG 0.492995 3.3:-64779007 MS.gene052606:CDS
GCAACCATCCTAACCGGCTC+AGG 0.495398 3.3:-64780311 MS.gene052606:CDS
ACATTTGTGGAATCATCAGC+TGG 0.495434 3.3:-64779324 MS.gene052606:CDS
CTTCCTTTAGGTCTTGCTCC+AGG 0.495831 3.3:-64780122 MS.gene052606:intron
GGCTAATTTGGTTACGATGA+CGG 0.502335 3.3:-64779841 MS.gene052606:CDS
GGTCCTTCACTAGTGATGGT+TGG 0.503897 3.3:-64779192 MS.gene052606:CDS
CGAACAGTCTGCAACGGAGC+AGG 0.504315 3.3:+64780283 None:intergenic
TGGGCTTATTGGGCCTGATC+CGG 0.513185 3.3:-64779862 MS.gene052606:CDS
GGAGCAGGTTCCGCCTGAGC+CGG 0.514286 3.3:+64780298 None:intergenic
AGTGTTCCTCCATGGGCTAT+AGG 0.514609 3.3:-64779213 MS.gene052606:CDS
GTCAACGCAACCATCCTAAC+CGG 0.515994 3.3:-64780317 MS.gene052606:CDS
GCCGTTACAAACAGCTTCAT+AGG 0.518154 3.3:-64780434 MS.gene052606:CDS
GAAACTGGGGCTTGCTTGGG+TGG 0.519213 3.3:-64779798 MS.gene052606:CDS
TCCGCCTGAGCCGGTTAGGA+TGG 0.522218 3.3:+64780307 None:intergenic
TAAATTGGTTGGGGAAAATG+AGG 0.522940 3.3:-64778996 MS.gene052606:CDS
TAAGATTGAATCAACTGCAT+GGG 0.524569 3.3:-64779565 MS.gene052606:intron
TATAGGTCCTTCACTAGTGA+TGG 0.527969 3.3:-64779196 MS.gene052606:CDS
TTAGGCTTCAGTGTGCAATC+TGG 0.529240 3.3:+64780248 None:intergenic
ATACCTGGAGCAAGACCTAA+AGG 0.530459 3.3:+64780119 None:intergenic
AATATAGAAGTATGGGAGGA+GGG 0.534212 3.3:-64780523 None:intergenic
TGCACACTGAAGCCTAATGC+TGG 0.535912 3.3:-64780242 MS.gene052606:CDS
AGCAACAATACCATTTGCTA+TGG 0.536834 3.3:+64779071 None:intergenic
AAAATCATTATAGCAAAAGC+AGG 0.540709 3.3:+64779111 None:intergenic
TAATATAGAAGTATGGGAGG+AGG 0.545354 3.3:-64780524 None:intergenic
TAATAAAAGGGAAGTTTGGG+AGG 0.550227 3.3:-64779523 MS.gene052606:CDS
GCATATATTGTTGATGCAGC+TGG 0.552779 3.3:-64779387 MS.gene052606:CDS
GGTTGGGGAAAATGAGGAGA+AGG 0.555614 3.3:-64778990 MS.gene052606:CDS
GTTGATGTAATTGCTATGAC+TGG 0.557035 3.3:-64779480 MS.gene052606:CDS
GTAAGCCATGGTTAGAAAAG+TGG 0.557631 3.3:+64780349 None:intergenic
AACAACAGGTGTTGACTCAA+TGG 0.559073 3.3:-64778932 MS.gene052606:CDS
AAAGTATCGACCCAGAAACT+GGG 0.559581 3.3:-64779812 MS.gene052606:CDS
CAAGCATCATAAATTGGTTG+GGG 0.560273 3.3:-64779005 MS.gene052606:CDS
CTGGGATGAGAGAGGGTGGT+AGG 0.562053 3.3:-64779305 MS.gene052606:CDS
AAGTTGTGAAGGATATTGAT+TGG 0.562846 3.3:-64779155 MS.gene052606:CDS
ATGCAGCTGGTACTATTGTA+GGG 0.565450 3.3:-64779374 MS.gene052606:CDS
TTGTTGCAGTGGCCGACACT+TGG 0.566804 3.3:+64778950 None:intergenic
GACGGTTATGATGTAAGCCA+TGG 0.571881 3.3:+64780337 None:intergenic
ATAAGATTGAATCAACTGCA+TGG 0.577206 3.3:-64779566 MS.gene052606:intron
ACCATCCTAACCGGCTCAGG+CGG 0.579563 3.3:-64780308 MS.gene052606:CDS
ATGTATACTATGGCTGAGAT+TGG 0.581796 3.3:-64779453 MS.gene052606:CDS
TCCTATGAAGCTGTTTGTAA+CGG 0.584350 3.3:+64780433 None:intergenic
ACCCCAACCATCACTAGTGA+AGG 0.592025 3.3:+64779189 None:intergenic
AATGAGGAGAAGGATGATCA+AGG 0.597156 3.3:-64778980 MS.gene052606:CDS
TCCTTCACTAGTGATGGTTG+GGG 0.600145 3.3:-64779190 MS.gene052606:CDS
GTCATCGTAACCAAATTAGC+CGG 0.603620 3.3:+64779843 None:intergenic
AATGATGATGAAAGTTGTGA+AGG 0.608328 3.3:-64779166 MS.gene052606:CDS
GGTTAGAAAAGTGGCAGTTG+CGG 0.614796 3.3:+64780358 None:intergenic
ATCATCAGCTGGGATGAGAG+AGG 0.620208 3.3:-64779313 MS.gene052606:CDS
TCATCAGCTGGGATGAGAGA+GGG 0.625775 3.3:-64779312 MS.gene052606:CDS
AGTGAAGGACCTATAGCCCA+TGG 0.627407 3.3:+64779204 None:intergenic
GTGCAATCTGGTGTTGCAGT+AGG 0.631629 3.3:+64780260 None:intergenic
GTCAACACCTGTTGTTGCAG+TGG 0.633263 3.3:+64778939 None:intergenic
ATGGGAGGAGGGAAAGCATG+TGG 0.635626 3.3:-64780512 MS.gene052606:CDS
GGAGGAACACTTGACAACAA+AGG 0.635885 3.3:+64779225 None:intergenic
CTGGAGCAAGACCTAAAGGA+AGG 0.643586 3.3:+64780123 None:intergenic
CAAGGAGCATAACCAAGTGT+CGG 0.645951 3.3:-64778962 MS.gene052606:CDS
CATTTGTGGAATCATCAGCT+GGG 0.649553 3.3:-64779323 MS.gene052606:CDS
AACAGGTGTTGACTCAATGG+TGG 0.650221 3.3:-64778929 MS.gene052606:CDS
AATTAATATAGAAGTATGGG+AGG 0.654250 3.3:-64780527 None:intergenic
AGTAGGCGAACAGTCTGCAA+CGG 0.671171 3.3:+64780277 None:intergenic
AAGTATCGACCCAGAAACTG+GGG 0.678648 3.3:-64779811 MS.gene052606:CDS
TCAGCTGGGATGAGAGAGGG+TGG 0.679695 3.3:-64779309 MS.gene052606:CDS
GTCTTGGTTTAGACACACTG+AGG 0.729855 3.3:-64779658 MS.gene052606:intron
GAAGGACCTATAGCCCATGG+AGG 0.763046 3.3:+64779207 None:intergenic
AGGAACACTTGACAACAAAG+GGG 0.764521 3.3:+64779227 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAGCTAAATAAGCATT+GGG + chr3.3:64779341-64779360 None:intergenic 20.0%
!!! ACTTTGGTGATTTTAATAAA+AGG - chr3.3:64779894-64779913 MS.gene052606:intron 20.0%
!!! ATTTTAATAAAAGGGAAGTT+TGG - chr3.3:64779903-64779922 MS.gene052606:intron 20.0%
!!! CTTTGGTGATTTTAATAAAA+GGG - chr3.3:64779895-64779914 MS.gene052606:intron 20.0%
!!! TTTTAATAAAAGGGAAGTTT+GGG - chr3.3:64779904-64779923 MS.gene052606:intron 20.0%
! AAAATCATTATAGCAAAAGC+AGG + chr3.3:64780322-64780341 None:intergenic 25.0%
! AATCTCATATCAAACTTCAA+TGG - chr3.3:64779388-64779407 MS.gene052606:CDS 25.0%
! AGCTTATACCAAAATCTATT+AGG - chr3.3:64779480-64779499 MS.gene052606:CDS 25.0%
! GGTTTAATGAAGAATGTTAA+AGG - chr3.3:64779713-64779732 MS.gene052606:CDS 25.0%
! GTTAAAAGCTAAATAAGCAT+TGG + chr3.3:64779342-64779361 None:intergenic 25.0%
! GTTAAAGGTAGTATGATTTA+TGG - chr3.3:64779728-64779747 MS.gene052606:CDS 25.0%
!! AAACTTTGAAGGTGAATATA+TGG - chr3.3:64780021-64780040 MS.gene052606:intron 25.0%
!!! TATTTAGCTTTTAACCTTGT+TGG - chr3.3:64779347-64779366 MS.gene052606:CDS 25.0%
AAAAAACACATGGACTCAAA+TGG - chr3.3:64778956-64778975 MS.gene052606:CDS 30.0%
AAGTTGTGAAGGATATTGAT+TGG - chr3.3:64780275-64780294 MS.gene052606:CDS 30.0%
AGCCAAAACAAAAAATGACT+TGG - chr3.3:64779226-64779245 MS.gene052606:CDS 30.0%
ATAAGATTGAATCAACTGCA+TGG - chr3.3:64779864-64779883 MS.gene052606:CDS 30.0%
CTAACTTATTCCATAGCAAA+TGG - chr3.3:64780349-64780368 MS.gene052606:CDS 30.0%
GACTGGTATAATGTATACTA+TGG - chr3.3:64779967-64779986 MS.gene052606:intron 30.0%
GATGAAAAAGGAAACTTTGA+AGG - chr3.3:64780010-64780029 MS.gene052606:intron 30.0%
TAAGATTGAATCAACTGCAT+GGG - chr3.3:64779865-64779884 MS.gene052606:CDS 30.0%
TTTCAAGGCTAAAAAACACA+TGG - chr3.3:64778946-64778965 MS.gene052606:CDS 30.0%
! AACTTCAATGGCTATTGTTT+TGG - chr3.3:64779400-64779419 MS.gene052606:CDS 30.0%
! AATGATGATGAAAGTTGTGA+AGG - chr3.3:64780264-64780283 MS.gene052606:CDS 30.0%
! CAAAACAAAAAATGACTTGG+TGG - chr3.3:64779229-64779248 MS.gene052606:CDS 30.0%
! TCTTTGTTGTAACTTGAAGT+AGG + chr3.3:64779024-64779043 None:intergenic 30.0%
! TTTAACCTTGTTGGTTATCA+TGG - chr3.3:64779356-64779375 MS.gene052606:CDS 30.0%
! TTTGCTATGGAATAAGTTAG+AGG + chr3.3:64780349-64780368 None:intergenic 30.0%
!!! CACCAAGTCATTTTTTGTTT+TGG + chr3.3:64779231-64779250 None:intergenic 30.0%
!!! TTTCTTTTAGCTTCTGCTTT+TGG - chr3.3:64779437-64779456 MS.gene052606:CDS 30.0%
!!! TTTTTAGCTAACCTTCCTTT+AGG - chr3.3:64779296-64779315 MS.gene052606:CDS 30.0%
AATGGTATTGTTGCTGGTAT+TGG - chr3.3:64780367-64780386 MS.gene052606:CDS 35.0%
ATAGCAAATGGTATTGTTGC+TGG - chr3.3:64780361-64780380 MS.gene052606:CDS 35.0%
ATGCTGCAAGCATCATAAAT+TGG - chr3.3:64780419-64780438 MS.gene052606:CDS 35.0%
ATGGTTTCTTCTGTTGCAAT+GGG - chr3.3:64779272-64779291 MS.gene052606:CDS 35.0%
ATGTATACTATGGCTGAGAT+TGG - chr3.3:64779977-64779996 MS.gene052606:intron 35.0%
CAAGCATCATAAATTGGTTG+GGG - chr3.3:64780425-64780444 MS.gene052606:CDS 35.0%
GCAAGCATCATAAATTGGTT+GGG - chr3.3:64780424-64780443 MS.gene052606:CDS 35.0%
GTTGATGTAATTGCTATGAC+TGG - chr3.3:64779950-64779969 MS.gene052606:intron 35.0%
TAAATTGGTTGGGGAAAATG+AGG - chr3.3:64780434-64780453 MS.gene052606:CDS 35.0%
TAATAAAAGGGAAGTTTGGG+AGG - chr3.3:64779907-64779926 MS.gene052606:intron 35.0%
TACAACAACTGCAACATTTG+TGG - chr3.3:64780093-64780112 MS.gene052606:intron 35.0%
TATGGTTTCTTCTGTTGCAA+TGG - chr3.3:64779271-64779290 MS.gene052606:CDS 35.0%
TCCTATGAAGCTGTTTGTAA+CGG + chr3.3:64779000-64779019 None:intergenic 35.0%
TCTTTGTGACATTTGTGTCT+TGG - chr3.3:64779756-64779775 MS.gene052606:CDS 35.0%
TGCAAGCATCATAAATTGGT+TGG - chr3.3:64780423-64780442 MS.gene052606:CDS 35.0%
! AAGCATGTGGTGTATTTTCA+AGG - chr3.3:64778931-64778950 MS.gene052606:CDS 35.0%
! AGCAACAATACCATTTGCTA+TGG + chr3.3:64780362-64780381 None:intergenic 35.0%
! CATGCAAGCCTAATAGATTT+TGG + chr3.3:64779491-64779510 None:intergenic 35.0%
! GGTTTTCTTATCACAAGCTA+CGG - chr3.3:64779692-64779711 MS.gene052606:CDS 35.0%
! TATTTTCCTGATACACCACT+TGG - chr3.3:64779800-64779819 MS.gene052606:CDS 35.0%
! TTCAAGTTAACCAAGGTGTT+GGG - chr3.3:64779549-64779568 MS.gene052606:CDS 35.0%
!! GGGCTTTTTATTGCTTTTGT+GGG - chr3.3:64779524-64779543 MS.gene052606:CDS 35.0%
!! TGGGCTTTTTATTGCTTTTG+TGG - chr3.3:64779523-64779542 MS.gene052606:CDS 35.0%
!!! ACTGCATGGGTTTTTAACTT+TGG - chr3.3:64779878-64779897 MS.gene052606:intron 35.0%
!!! ATGGCTATTGTTTTGGTTGA+AGG - chr3.3:64779407-64779426 MS.gene052606:CDS 35.0%
AATGAGGAGAAGGATGATCA+AGG - chr3.3:64780450-64780469 MS.gene052606:CDS 40.0%
ACATTTGTGGAATCATCAGC+TGG - chr3.3:64780106-64780125 MS.gene052606:intron 40.0%
ACTATTGTAGGGTCAGCTTT+AGG - chr3.3:64780067-64780086 MS.gene052606:intron 40.0%
AGGAACACTTGACAACAAAG+GGG + chr3.3:64780206-64780225 None:intergenic 40.0%
ATGCAGCTGGTACTATTGTA+GGG - chr3.3:64780056-64780075 MS.gene052606:intron 40.0%
CAAGCTTCATATCCAGCATT+AGG + chr3.3:64779203-64779222 None:intergenic 40.0%
CACTTCCATGATAACCAACA+AGG + chr3.3:64779364-64779383 None:intergenic 40.0%
CATTTGTGGAATCATCAGCT+GGG - chr3.3:64780107-64780126 MS.gene052606:intron 40.0%
CTAAAATTCCCATCACCAAG+TGG + chr3.3:64779818-64779837 None:intergenic 40.0%
GAGGAACACTTGACAACAAA+GGG + chr3.3:64780207-64780226 None:intergenic 40.0%
GCATATATTGTTGATGCAGC+TGG - chr3.3:64780043-64780062 MS.gene052606:intron 40.0%
GGCTAATTTGGTTACGATGA+CGG - chr3.3:64779589-64779608 MS.gene052606:intron 40.0%
GGTGAGTTTGTGGATGAAAA+AGG - chr3.3:64779998-64780017 MS.gene052606:intron 40.0%
GTAAGCCATGGTTAGAAAAG+TGG + chr3.3:64779084-64779103 None:intergenic 40.0%
GTCATCGTAACCAAATTAGC+CGG + chr3.3:64779590-64779609 None:intergenic 40.0%
GTTTGTAACGGCGTTGTTTA+TGG + chr3.3:64778988-64779007 None:intergenic 40.0%
TATAGGTCCTTCACTAGTGA+TGG - chr3.3:64780234-64780253 MS.gene052606:CDS 40.0%
TGCAACTTCTGTAACTGCTA+TGG - chr3.3:64779253-64779272 MS.gene052606:CDS 40.0%
! CAACACCTTGGTTAACTTGA+AGG + chr3.3:64779550-64779569 None:intergenic 40.0%
! CTTCAAGTTAACCAAGGTGT+TGG - chr3.3:64779548-64779567 MS.gene052606:CDS 40.0%
! CTTGTTGGTTATCATGGAAG+TGG - chr3.3:64779362-64779381 MS.gene052606:CDS 40.0%
! TTCTGGGTCGATACTTTTAC+AGG + chr3.3:64779615-64779634 None:intergenic 40.0%
!! AAAAGTATCGACCCAGAAAC+TGG - chr3.3:64779617-64779636 MS.gene052606:intron 40.0%
!! AAAGTATCGACCCAGAAACT+GGG - chr3.3:64779618-64779637 MS.gene052606:intron 40.0%
!! AACAACAGGTGTTGACTCAA+TGG - chr3.3:64780498-64780517 MS.gene052606:CDS 40.0%
!!! AACTGCCACTTTTCTAACCA+TGG - chr3.3:64779076-64779095 MS.gene052606:CDS 40.0%
!!! GCTTCTGCTTTTGGTTTAAG+AGG - chr3.3:64779446-64779465 MS.gene052606:CDS 40.0%
AAAGCTCCAAGCCAGAACTT+TGG + chr3.3:64779671-64779690 None:intergenic 45.0%
AAGCTCCAAGCCAGAACTTT+GGG + chr3.3:64779670-64779689 None:intergenic 45.0%
AGTTGCAAAGCCCAAAGTTC+TGG - chr3.3:64779657-64779676 MS.gene052606:intron 45.0%
ATACCTGGAGCAAGACCTAA+AGG + chr3.3:64779314-64779333 None:intergenic 45.0%
GACGGTTATGATGTAAGCCA+TGG + chr3.3:64779096-64779115 None:intergenic 45.0%
GATGCAGCTGGTACTATTGT+AGG - chr3.3:64780055-64780074 MS.gene052606:intron 45.0%
GCCGTTACAAACAGCTTCAT+AGG - chr3.3:64778996-64779015 MS.gene052606:CDS 45.0%
GGAGGAACACTTGACAACAA+AGG + chr3.3:64780208-64780227 None:intergenic 45.0%
GGATTAACGGCTGTGATCAT+TGG - chr3.3:64780151-64780170 MS.gene052606:CDS 45.0%
GGTTAGAAAAGTGGCAGTTG+CGG + chr3.3:64779075-64779094 None:intergenic 45.0%
GTAACCAAATTAGCCGGATC+AGG + chr3.3:64779584-64779603 None:intergenic 45.0%
GTCCTTCACTAGTGATGGTT+GGG - chr3.3:64780239-64780258 MS.gene052606:CDS 45.0%
GTCTTGGTTTAGACACACTG+AGG - chr3.3:64779772-64779791 MS.gene052606:CDS 45.0%
GTTGTCAAGTGTTCCTCCAT+GGG - chr3.3:64780210-64780229 MS.gene052606:CDS 45.0%
TCCTTCACTAGTGATGGTTG+GGG - chr3.3:64780240-64780259 MS.gene052606:CDS 45.0%
TGTTGTCAAGTGTTCCTCCA+TGG - chr3.3:64780209-64780228 MS.gene052606:CDS 45.0%
TTAGGCTTCAGTGTGCAATC+TGG + chr3.3:64779185-64779204 None:intergenic 45.0%
TTAGGTCTTGCTCCAGGTAT+GGG - chr3.3:64779314-64779333 MS.gene052606:CDS 45.0%
TTTAGGTCTTGCTCCAGGTA+TGG - chr3.3:64779313-64779332 MS.gene052606:CDS 45.0%
! CAAGGAGCATAACCAAGTGT+CGG - chr3.3:64780468-64780487 MS.gene052606:CDS 45.0%
! CTGATACACCACTTGGTGAT+GGG - chr3.3:64779807-64779826 MS.gene052606:CDS 45.0%
! TTGCATGTGCTGCTGGTATT+GGG - chr3.3:64779504-64779523 MS.gene052606:CDS 45.0%
!! AACAGGTGTTGACTCAATGG+TGG - chr3.3:64780501-64780520 MS.gene052606:CDS 45.0%
!! AACCAAGGTGTTGGGCTTAT+TGG - chr3.3:64779557-64779576 MS.gene052606:CDS 45.0%
!! AAGTATCGACCCAGAAACTG+GGG - chr3.3:64779619-64779638 MS.gene052606:intron 45.0%
!! ACCAAGGTGTTGGGCTTATT+GGG - chr3.3:64779558-64779577 MS.gene052606:CDS 45.0%
!!! AAGTTCTGGCTTGGAGCTTT+TGG - chr3.3:64779671-64779690 MS.gene052606:CDS 45.0%
ACCCCAACCATCACTAGTGA+AGG + chr3.3:64780244-64780263 None:intergenic 50.0%
AGTAGGCGAACAGTCTGCAA+CGG + chr3.3:64779156-64779175 None:intergenic 50.0%
AGTGAAGGACCTATAGCCCA+TGG + chr3.3:64780229-64780248 None:intergenic 50.0%
ATCATCAGCTGGGATGAGAG+AGG - chr3.3:64780117-64780136 MS.gene052606:intron 50.0%
ATTAGGCTTGCATGTGCTGC+TGG - chr3.3:64779497-64779516 MS.gene052606:CDS 50.0%
CCATCACCAAGTGGTGTATC+AGG + chr3.3:64779809-64779828 None:intergenic 50.0%
CTGGAGCAAGACCTAAAGGA+AGG + chr3.3:64779310-64779329 None:intergenic 50.0%
CTTCCTTTAGGTCTTGCTCC+AGG - chr3.3:64779308-64779327 MS.gene052606:CDS 50.0%
GGCTGAGATTGGTGAGTTTG+TGG - chr3.3:64779988-64780007 MS.gene052606:intron 50.0%
GGGTGGTAGGACAGGATTAA+CGG - chr3.3:64780138-64780157 MS.gene052606:CDS 50.0%
GGTCCTTCACTAGTGATGGT+TGG - chr3.3:64780238-64780257 MS.gene052606:CDS 50.0%
GGTTAGGATGGTTGCGTTGA+CGG + chr3.3:64779114-64779133 None:intergenic 50.0%
GGTTGGGGAAAATGAGGAGA+AGG - chr3.3:64780440-64780459 MS.gene052606:CDS 50.0%
GTCAACACCTGTTGTTGCAG+TGG + chr3.3:64780494-64780513 None:intergenic 50.0%
GTCAACGCAACCATCCTAAC+CGG - chr3.3:64779113-64779132 MS.gene052606:CDS 50.0%
TAGGTCTTGCTCCAGGTATG+GGG - chr3.3:64779315-64779334 MS.gene052606:CDS 50.0%
TCATCAGCTGGGATGAGAGA+GGG - chr3.3:64780118-64780137 MS.gene052606:intron 50.0%
TGCACACTGAAGCCTAATGC+TGG - chr3.3:64779188-64779207 MS.gene052606:CDS 50.0%
! AAGGGAAGTTTGGGAGGCAT+TGG - chr3.3:64779913-64779932 MS.gene052606:intron 50.0%
! AGTGTTCCTCCATGGGCTAT+AGG - chr3.3:64780217-64780236 MS.gene052606:CDS 50.0%
! CAAAGCCCAAAGTTCTGGCT+TGG - chr3.3:64779662-64779681 MS.gene052606:CDS 50.0%
! CCTGATACACCACTTGGTGA+TGG - chr3.3:64779806-64779825 MS.gene052606:CDS 50.0%
! CTTGCATGTGCTGCTGGTAT+TGG - chr3.3:64779503-64779522 MS.gene052606:CDS 50.0%
! GTGGGCCTTCAAGTTAACCA+AGG - chr3.3:64779542-64779561 MS.gene052606:CDS 50.0%
!! GTGCAATCTGGTGTTGCAGT+AGG + chr3.3:64779173-64779192 None:intergenic 50.0%
ATGAGAGAGGGTGGTAGGAC+AGG - chr3.3:64780130-64780149 MS.gene052606:CDS 55.0%
CCAAGCAAGCCCCAGTTTCT+GGG + chr3.3:64779631-64779650 None:intergenic 55.0%
GAAGGACCTATAGCCCATGG+AGG + chr3.3:64780226-64780245 None:intergenic 55.0%
GCCCAATAAGCCCAACACCT+TGG + chr3.3:64779562-64779581 None:intergenic 55.0%
TGGGCCTGATCCGGCTAATT+TGG - chr3.3:64779577-64779596 MS.gene052606:intron 55.0%
TGGGCTTATTGGGCCTGATC+CGG - chr3.3:64779568-64779587 MS.gene052606:intron 55.0%
TTGTTGCAGTGGCCGACACT+TGG + chr3.3:64780483-64780502 None:intergenic 55.0%
! ATGGGAGGAGGGAAAGCATG+TGG - chr3.3:64778918-64778937 MS.gene052606:CDS 55.0%
! CCAGAAACTGGGGCTTGCTT+GGG - chr3.3:64779629-64779648 MS.gene052606:intron 55.0%
!! TAAGCATTGGGCCCCATACC+TGG + chr3.3:64779329-64779348 None:intergenic 55.0%
CCCAAGCAAGCCCCAGTTTC+TGG + chr3.3:64779632-64779651 None:intergenic 60.0%
CGAACAGTCTGCAACGGAGC+AGG + chr3.3:64779150-64779169 None:intergenic 60.0%
CTGGGATGAGAGAGGGTGGT+AGG - chr3.3:64780125-64780144 MS.gene052606:CDS 60.0%
TCAGCTGGGATGAGAGAGGG+TGG - chr3.3:64780121-64780140 MS.gene052606:intron 60.0%
! ACCATCCTAACCGGCTCAGG+CGG - chr3.3:64779122-64779141 MS.gene052606:CDS 60.0%
! CCCAGAAACTGGGGCTTGCT+TGG - chr3.3:64779628-64779647 MS.gene052606:intron 60.0%
! GAAACTGGGGCTTGCTTGGG+TGG - chr3.3:64779632-64779651 MS.gene052606:intron 60.0%
! GCAACCATCCTAACCGGCTC+AGG - chr3.3:64779119-64779138 MS.gene052606:CDS 60.0%
! GTGTCGGCCACTGCAACAAC+AGG - chr3.3:64780484-64780503 MS.gene052606:CDS 60.0%
AGGTTCCGCCTGAGCCGGTT+AGG + chr3.3:64779130-64779149 None:intergenic 65.0%
TCCGCCTGAGCCGGTTAGGA+TGG + chr3.3:64779126-64779145 None:intergenic 65.0%
GGAGCAGGTTCCGCCTGAGC+CGG + chr3.3:64779135-64779154 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 64778918 64780534 64778918 ID=MS.gene052606
chr3.3 mRNA 64778918 64780534 64778918 ID=MS.gene052606.t1;Parent=MS.gene052606
chr3.3 exon 64780123 64780534 64780123 ID=MS.gene052606.t1.exon1;Parent=MS.gene052606.t1
chr3.3 CDS 64780123 64780534 64780123 ID=cds.MS.gene052606.t1;Parent=MS.gene052606.t1
chr3.3 exon 64779659 64779888 64779659 ID=MS.gene052606.t1.exon2;Parent=MS.gene052606.t1
chr3.3 CDS 64779659 64779888 64779659 ID=cds.MS.gene052606.t1;Parent=MS.gene052606.t1
chr3.3 exon 64778918 64779583 64778918 ID=MS.gene052606.t1.exon3;Parent=MS.gene052606.t1
chr3.3 CDS 64778918 64779583 64778918 ID=cds.MS.gene052606.t1;Parent=MS.gene052606.t1
Gene Sequence

>MS.gene052606

ATGGGAGGAGGGAAAGCATGTGGTGTATTTTCAAGGCTAAAAAACACATGGACTCAAATGGAAAAATCCATAAACAACGCCGTTACAAACAGCTTCATAGGATCCTACTTCAAGTTACAACAAAGAAAAACATGCTTCACTAAAGAACTACGCGCCGCAACTGCCACTTTTCTAACCATGGCTTACATCATAACCGTCAACGCAACCATCCTAACCGGCTCAGGCGGAACCTGCTCCGTTGCAGACTGTTCGCCTACTGCAACACCAGATTGCACACTGAAGCCTAATGCTGGATATGAAGCTTGTCTAGCCAAAACAAAAAATGACTTGGTGGTTGCAACTTCTGTAACTGCTATGGTTTCTTCTGTTGCAATGGGATTTTTAGCTAACCTTCCTTTAGGTCTTGCTCCAGGTATGGGGCCCAATGCTTATTTAGCTTTTAACCTTGTTGGTTATCATGGAAGTGGCTCAATCTCATATCAAACTTCAATGGCTATTGTTTTGGTTGAAGGTTGTGCTTTTCTTTTAGCTTCTGCTTTTGGTTTAAGAGGTAAGCTTGCTAAGCTTATACCAAAATCTATTAGGCTTGCATGTGCTGCTGGTATTGGGCTTTTTATTGCTTTTGTGGGCCTTCAAGTTAACCAAGGTGTTGGGCTTATTGGGCCTGATCCGGCTAATTTGGTTACGATGACGGCCTGTAAAAGTATCGACCCAGAAACTGGGGCTTGCTTGGGTGGTAAGTTGCAAAGCCCAAAGTTCTGGCTTGGAGCTTTTGGTTTTCTTATCACAAGCTACGGTTTAATGAAGAATGTTAAAGGTAGTATGATTTATGGTATTCTCTTTGTGACATTTGTGTCTTGGTTTAGACACACTGAGGTTACTTATTTTCCTGATACACCACTTGGTGATGGGAATTTTAGTTATTTCAAACAAATTGTTGATTTTCATAAGATTGAATCAACTGCATGGGTTTTTAACTTTGGTGATTTTAATAAAAGGGAAGTTTGGGAGGCATTGGCTACTTTGTTTTATGTTGATGTAATTGCTATGACTGGTATAATGTATACTATGGCTGAGATTGGTGAGTTTGTGGATGAAAAAGGAAACTTTGAAGGTGAATATATGGCATATATTGTTGATGCAGCTGGTACTATTGTAGGGTCAGCTTTAGGTGTTACAACAACTGCAACATTTGTGGAATCATCAGCTGGGATGAGAGAGGGTGGTAGGACAGGATTAACGGCTGTGATCATTGGATTGTATTTCTTTTTGTCATTGTTTTTCACCCCTTTGTTGTCAAGTGTTCCTCCATGGGCTATAGGTCCTTCACTAGTGATGGTTGGGGTAATGATGATGAAAGTTGTGAAGGATATTGATTGGACTAATATAAAAGAAGCAGTTCCTGCTTTTGCTATAATGATTTTAATGCCTCTAACTTATTCCATAGCAAATGGTATTGTTGCTGGTATTGGTCTTTATGTTGCTCTTAGTCTTTTTGACTATGCTGCAAGCATCATAAATTGGTTGGGGAAAATGAGGAGAAGGATGATCAAGGAGCATAACCAAGTGTCGGCCACTGCAACAACAGGTGTTGACTCAATGGTGGAAATCATTTGA

Protein sequence

>MS.gene052606.t1

MGGGKACGVFSRLKNTWTQMEKSINNAVTNSFIGSYFKLQQRKTCFTKELRAATATFLTMAYIITVNATILTGSGGTCSVADCSPTATPDCTLKPNAGYEACLAKTKNDLVVATSVTAMVSSVAMGFLANLPLGLAPGVGLIGPDPANLVTMTACKSIDPETGACLGGKLQSPKFWLGAFGFLITSYGLMKNVKGSMIYGILFVTFVSWFRHTEIESTAWVFNFGDFNKREVWEALATLFYVDVIAMTGIMYTMAEIGEFVDEKGNFEGEYMAYIVDAAGTIVGSALGVTTTATFVESSAGMREGGRTGLTAVIIGLYFFLSLFFTPLLSSVPPWAIGPSLVMVGVMMMKVVKDIDWTNIKEAVPAFAIMILMPLTYSIANGIVAGIGLYVALSLFDYAASIINWLGKMRRRMIKEHNQVSATATTGVDSMVEII