AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060593


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060593.t1 MTR_2g076590 92.009 438 33 1 1 436 1 438 0.0 823
MS.gene060593.t1 MTR_2g076490 90.826 436 22 1 1 436 1 418 0.0 810
MS.gene060593.t1 MTR_2g076610 81.940 299 33 2 89 387 19 296 1.94e-174 490
MS.gene060593.t1 MTR_2g076650 70.238 252 55 4 33 282 2 235 1.16e-116 342
MS.gene060593.t1 MTR_1g012550 25.849 383 247 12 63 437 65 418 1.30e-23 104
MS.gene060593.t1 MTR_7g072460 27.536 345 200 13 108 444 99 401 2.47e-22 99.4
MS.gene060593.t1 MTR_0280s0040 27.804 428 228 23 51 433 38 429 4.15e-22 100
MS.gene060593.t1 MTR_2g089440 29.333 375 207 19 93 433 80 430 1.54e-21 98.2
MS.gene060593.t1 MTR_7g058830 27.725 422 247 21 60 451 47 440 6.92e-21 96.3
MS.gene060593.t1 MTR_7g092050 27.717 368 215 18 60 410 48 381 1.03e-20 95.5
MS.gene060593.t1 MTR_3g031640 27.500 400 247 17 63 440 42 420 1.39e-20 95.1
MS.gene060593.t1 MTR_3g031580 26.450 431 270 18 34 446 18 419 2.23e-20 94.7
MS.gene060593.t1 MTR_7g058530 28.148 405 241 18 60 441 48 425 2.31e-20 94.7
MS.gene060593.t1 MTR_3g031480 26.699 412 242 17 15 403 9 383 4.25e-20 94.0
MS.gene060593.t1 MTR_2g089360 28.686 373 212 18 93 433 77 427 6.38e-20 93.2
MS.gene060593.t1 MTR_3g031610 26.410 390 254 14 63 436 42 414 2.81e-19 91.3
MS.gene060593.t1 MTR_3g107070 23.873 377 249 11 63 431 41 387 4.61e-19 90.5
MS.gene060593.t1 MTR_8g465510 25.000 424 251 15 9 401 1 388 1.06e-18 89.4
MS.gene060593.t1 MTR_3g102400 27.500 360 218 17 60 398 45 382 1.22e-18 89.4
MS.gene060593.t1 MTR_2g103810 25.000 384 251 14 60 433 56 412 2.65e-18 88.2
MS.gene060593.t1 MTR_8g030500 26.829 410 234 21 60 434 31 409 1.25e-17 86.3
MS.gene060593.t1 MTR_3g031500 27.248 367 223 15 96 446 2 340 1.76e-17 85.5
MS.gene060593.t1 MTR_3g031600 28.134 359 219 14 63 403 42 379 2.77e-17 85.1
MS.gene060593.t1 MTR_2g011150 26.849 365 213 18 63 401 50 386 3.14e-17 84.7
MS.gene060593.t1 MTR_1g099400 24.105 419 257 16 60 433 33 435 8.45e-17 83.6
MS.gene060593.t1 MTR_8g013600 24.205 409 259 14 52 434 40 423 9.07e-17 83.6
MS.gene060593.t1 MTR_2g011160 25.676 370 211 15 63 401 48 384 9.52e-17 83.6
MS.gene060593.t1 MTR_2g011160 25.676 370 211 15 63 401 48 384 1.07e-16 83.2
MS.gene060593.t1 MTR_2g011170 26.347 334 199 12 93 401 73 384 1.25e-16 83.2
MS.gene060593.t1 MTR_2g011170 26.347 334 199 12 93 401 73 384 1.27e-16 82.8
MS.gene060593.t1 MTR_7g056450 23.678 435 238 20 52 439 47 434 1.73e-16 82.4
MS.gene060593.t1 MTR_7g056450 23.678 435 238 20 52 439 37 424 1.91e-16 82.4
MS.gene060593.t1 MTR_0090s0020 24.796 367 220 13 63 401 44 382 2.39e-16 82.0
MS.gene060593.t1 MTR_0090s0020 24.796 367 220 13 63 401 44 382 2.40e-16 82.0
MS.gene060593.t1 MTR_0090s0020 24.796 367 220 13 63 401 44 382 2.69e-16 82.0
MS.gene060593.t1 MTR_0090s0020 24.796 367 220 13 63 401 44 382 3.48e-16 81.6
MS.gene060593.t1 MTR_7g053050 25.791 411 238 17 63 441 49 424 3.96e-16 81.6
MS.gene060593.t1 MTR_3g031490 25.508 443 272 18 15 434 6 413 4.45e-16 81.3
MS.gene060593.t1 MTR_2g080100 22.816 412 254 14 60 450 61 429 5.57e-16 80.9
MS.gene060593.t1 MTR_3g031470 39.865 148 77 5 63 201 44 188 7.84e-16 80.5
MS.gene060593.t1 MTR_4g094858 26.374 364 218 15 60 401 46 381 8.80e-16 80.5
MS.gene060593.t1 MTR_4g081650 24.823 423 245 20 9 401 1 380 1.11e-15 80.1
MS.gene060593.t1 MTR_5g067250 26.074 349 197 16 91 407 77 396 1.18e-15 80.1
MS.gene060593.t1 MTR_8g013610 26.075 372 221 14 93 434 78 425 1.26e-15 80.1
MS.gene060593.t1 MTR_5g067290 37.324 142 79 5 63 197 52 190 2.50e-15 78.2
MS.gene060593.t1 MTR_3g007650 25.214 468 264 21 9 433 11 435 6.24e-15 77.8
MS.gene060593.t1 MTR_8g465410 26.772 381 226 16 93 443 74 431 6.66e-15 77.8
MS.gene060593.t1 MTR_8g013560 26.036 338 201 13 93 403 77 392 1.31e-14 76.6
MS.gene060593.t1 MTR_3g007630 25.408 429 258 19 60 449 45 450 1.53e-14 76.6
MS.gene060593.t1 MTR_2g011180 25.401 374 219 17 60 401 46 391 1.69e-14 76.3
MS.gene060593.t1 MTR_2g011180 25.401 374 219 17 60 401 46 391 2.02e-14 76.3
MS.gene060593.t1 MTR_8g465580 25.798 376 236 15 93 443 74 431 2.17e-14 75.9
MS.gene060593.t1 MTR_2g081500 26.113 337 192 13 93 401 76 383 1.84e-13 73.2
MS.gene060593.t1 MTR_7g056623 24.484 339 208 15 93 404 55 372 2.25e-13 72.8
MS.gene060593.t1 MTR_7g103870 25.441 397 235 16 63 433 63 424 3.03e-13 72.0
MS.gene060593.t1 MTR_8g013580 26.005 373 220 17 93 434 84 431 3.68e-13 72.0
MS.gene060593.t1 MTR_8g011410 24.633 341 220 15 93 411 80 405 4.36e-13 72.0
MS.gene060593.t1 MTR_2g089290 48.780 82 34 4 93 169 84 162 6.30e-13 71.6
MS.gene060593.t1 MTR_6g043510 27.547 265 138 11 93 339 72 300 6.90e-13 71.2
MS.gene060593.t1 MTR_1g052880 25.176 425 225 23 46 415 29 415 9.29e-13 70.9
MS.gene060593.t1 MTR_3g007510 24.942 429 261 18 60 449 44 450 1.89e-12 70.1
MS.gene060593.t1 MTR_8g465990 24.398 332 209 14 93 401 77 389 2.03e-12 69.7
MS.gene060593.t1 MTR_8g465990 24.096 332 210 14 93 401 77 389 2.18e-12 69.7
MS.gene060593.t1 MTR_3g007510 25.729 377 223 16 60 401 44 398 2.39e-12 69.7
MS.gene060593.t1 MTR_8g465990 24.096 332 210 14 93 401 77 389 2.78e-12 69.3
MS.gene060593.t1 MTR_3g007510 25.729 377 223 16 60 401 44 398 2.78e-12 69.3
MS.gene060593.t1 MTR_7g058860 25.770 357 227 13 63 403 49 383 2.94e-12 69.3
MS.gene060593.t1 MTR_4g081675 27.249 378 206 20 60 401 44 388 3.21e-12 69.3
MS.gene060593.t1 MTR_2g067970 26.829 287 172 10 39 305 196 464 5.98e-12 68.6
MS.gene060593.t1 MTR_4g098890 22.254 355 191 15 93 401 652 967 7.31e-12 68.2
MS.gene060593.t1 MTR_7g056430 24.079 353 207 17 90 406 410 737 8.03e-12 68.2
MS.gene060593.t1 MTR_4g081730 27.353 340 194 15 92 401 72 388 8.11e-12 67.8
MS.gene060593.t1 MTR_8g465470 35.000 120 70 4 93 204 106 225 9.31e-12 67.8
MS.gene060593.t1 MTR_7g056420 24.079 353 207 17 90 406 410 737 1.07e-11 67.8
MS.gene060593.t1 MTR_3g020280 23.926 326 218 13 93 401 76 388 1.56e-11 67.0
MS.gene060593.t1 MTR_5g013070 24.041 391 229 16 63 411 47 411 1.75e-11 67.0
MS.gene060593.t1 MTR_4g081685 27.378 347 183 18 93 401 74 389 2.50e-11 66.2
MS.gene060593.t1 MTR_4g081665 28.507 221 125 11 9 210 1 207 3.72e-11 65.9
MS.gene060593.t1 MTR_3g019500 24.412 340 199 15 93 401 79 391 4.26e-11 65.5
MS.gene060593.t1 MTR_3g051420 35.200 125 68 6 93 205 81 204 4.42e-11 65.5
MS.gene060593.t1 MTR_4g114240 25.272 368 234 15 63 403 59 412 5.03e-11 65.5
MS.gene060593.t1 MTR_7g056640 24.024 333 212 14 93 404 103 415 5.56e-11 65.5
MS.gene060593.t1 MTR_2g067990 23.450 371 250 12 63 411 260 618 5.84e-11 65.5
MS.gene060593.t1 MTR_3g019500 24.412 340 199 15 93 401 79 391 6.20e-11 65.1
MS.gene060593.t1 MTR_3g019500 24.412 340 199 15 93 401 79 391 6.30e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060593.t1 AT1G78860 49.184 429 207 7 15 435 9 434 2.63e-143 417
MS.gene060593.t1 AT1G78850 47.964 442 207 8 8 435 2 434 3.61e-142 414
MS.gene060593.t1 AT1G78830 42.731 454 224 9 9 432 7 454 6.79e-120 358
MS.gene060593.t1 AT1G16905 43.541 418 207 7 28 435 24 422 8.80e-117 348
MS.gene060593.t1 AT1G78820 40.449 445 229 9 19 432 15 454 4.51e-110 333
MS.gene060593.t1 AT5G35370 27.642 369 207 18 93 433 86 422 9.46e-25 108
MS.gene060593.t1 AT4G00340 25.416 421 265 15 54 450 31 426 5.04e-22 99.8
MS.gene060593.t1 AT4G00340 27.151 372 230 14 54 408 31 378 1.48e-21 98.2
MS.gene060593.t1 AT4G21390 26.284 331 207 12 93 401 79 394 5.29e-20 93.6
MS.gene060593.t1 AT4G21390 26.284 331 207 12 93 401 79 394 5.32e-20 93.6
MS.gene060593.t1 AT3G12000 28.267 375 212 18 63 406 56 404 1.11e-19 91.7
MS.gene060593.t1 AT4G32300 24.309 362 239 13 60 412 52 387 8.42e-19 89.7
MS.gene060593.t1 AT4G11900 26.835 436 220 23 63 435 49 448 2.98e-18 88.2
MS.gene060593.t1 AT4G11900 26.835 436 220 23 63 435 49 448 2.98e-18 88.2
MS.gene060593.t1 AT4G11900 26.959 434 218 23 63 433 49 446 3.21e-18 87.8
MS.gene060593.t1 AT4G11900 26.959 434 218 23 63 433 49 446 3.21e-18 87.8
MS.gene060593.t1 AT4G11900 26.835 436 220 23 63 435 49 448 3.25e-18 87.8
MS.gene060593.t1 AT4G11900 26.959 434 218 23 63 433 49 446 3.30e-18 87.8
MS.gene060593.t1 AT4G11900 26.959 434 218 23 63 433 49 446 3.30e-18 87.8
MS.gene060593.t1 AT4G11900 26.959 434 218 23 63 433 49 446 4.14e-18 87.8
MS.gene060593.t1 AT4G11900 27.228 404 197 21 93 435 12 379 1.56e-17 85.9
MS.gene060593.t1 AT1G65790 28.440 327 198 14 92 401 78 385 1.66e-17 85.5
MS.gene060593.t1 AT1G65790 28.440 327 198 14 92 401 78 385 1.66e-17 85.5
MS.gene060593.t1 AT4G11900 27.363 402 195 21 93 433 12 377 2.37e-17 85.5
MS.gene060593.t1 AT1G65790 27.190 331 197 12 92 401 78 385 2.52e-17 85.1
MS.gene060593.t1 AT2G19130 23.898 431 264 19 43 437 28 430 6.54e-17 84.0
MS.gene060593.t1 AT5G24080 25.377 398 240 17 60 416 49 430 1.26e-16 83.2
MS.gene060593.t1 AT4G27290 24.766 428 237 18 12 401 7 387 6.41e-15 77.8
MS.gene060593.t1 AT4G27290 24.766 428 237 18 12 401 7 387 7.41e-15 77.4
MS.gene060593.t1 AT4G21380 24.625 333 207 12 92 401 80 391 3.06e-14 75.5
MS.gene060593.t1 AT4G21380 24.625 333 207 12 92 401 80 391 3.64e-14 75.5
MS.gene060593.t1 AT1G65800 24.791 359 230 15 63 401 51 389 2.05e-13 72.8
MS.gene060593.t1 AT1G65800 25.455 330 208 14 92 401 78 389 2.22e-13 72.8
MS.gene060593.t1 AT1G61390 26.087 345 193 19 93 403 91 407 2.76e-13 72.8
MS.gene060593.t1 AT2G41890 27.476 313 188 15 108 406 96 383 8.92e-13 70.9
MS.gene060593.t1 AT1G61370 24.496 347 197 16 93 403 74 391 1.05e-12 70.9
MS.gene060593.t1 AT1G61360 25.364 343 198 17 93 403 69 385 1.68e-11 67.0
MS.gene060593.t1 AT1G11340 25.210 357 186 19 93 405 137 456 1.84e-11 67.0
MS.gene060593.t1 AT1G11340 25.210 357 186 19 93 405 137 456 1.97e-11 66.6
MS.gene060593.t1 AT1G11340 25.210 357 186 19 93 405 69 388 2.99e-11 66.2

Find 93 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGAGAGATGTGGGAAATT+TGG 0.150939 2.2:+17516989 MS.gene060593:CDS
GATGAAAACCAATATTTAAT+TGG 0.200636 2.2:-17516686 None:intergenic
ACCTGAATTTACAAATTTAA+AGG 0.209048 2.2:-17516135 None:intergenic
TAAGGCAACAACACCTTTAT+TGG 0.209968 2.2:-17516432 None:intergenic
CCTCTGGAGAATGGAATATT+TGG 0.242972 2.2:+17517043 MS.gene060593:CDS
CTCCTAAGCCAATTAAATAT+TGG 0.243041 2.2:+17516678 MS.gene060593:CDS
ACCTTTAAATTTGTAAATTC+AGG 0.259009 2.2:+17516134 MS.gene060593:CDS
CAGAGAGATGTGGGAAATTT+GGG 0.259031 2.2:+17516990 MS.gene060593:CDS
GGAGACTTCATTGTAGAATA+TGG 0.268822 2.2:+17516164 MS.gene060593:CDS
TAAAGTGAGAAATGCGAGTT+TGG 0.277812 2.2:-17516057 None:intergenic
TGGTCCTTATAGTTTGGTTT+TGG 0.289630 2.2:+17516616 MS.gene060593:CDS
GGTAACCCAGTTGGTGAAAA+TGG 0.292216 2.2:+17516332 MS.gene060593:CDS
AATCCATACTCAAAAGATTC+TGG 0.292898 2.2:-17516764 None:intergenic
ATTCTAAAGGTAAATTTGTT+TGG 0.320757 2.2:+17516489 MS.gene060593:CDS
CAAACAAACACTTCCAATAA+AGG 0.333204 2.2:+17516419 MS.gene060593:CDS
TAATATAAAGCCAAACCTTT+AGG 0.338248 2.2:-17516641 None:intergenic
GTTGCCAATTCTACCACTTC+TGG 0.338278 2.2:+17516797 MS.gene060593:CDS
TATCTTAGGCTTGGAATTGA+TGG 0.341629 2.2:+17516863 MS.gene060593:CDS
AGCAGCTCTTCCGGTGGGTA+TGG 0.348471 2.2:+17516297 MS.gene060593:CDS
TGTTGATGGTCCTTATAGTT+TGG 0.357941 2.2:+17516610 MS.gene060593:CDS
AAGTGTAGTCCTAAGCCTTT+AGG 0.361000 2.2:+17517076 MS.gene060593:CDS
GGCTCCAAAACCAAACTATA+AGG 0.363469 2.2:-17516620 None:intergenic
GCAAATCCAGGTCCCTTATT+AGG 0.366363 2.2:-17517337 None:intergenic
ATAAAGGTGTTGTTGCCTTA+AGG 0.368914 2.2:+17516435 MS.gene060593:CDS
TTAAATATTGATCAACCAAA+AGG 0.385654 2.2:-17516538 None:intergenic
GATCAATATTTAAAGCCTAA+TGG 0.386664 2.2:+17516548 MS.gene060593:CDS
GTCCTTCAAAACTTGTTAGT+AGG 0.397669 2.2:+17516570 MS.gene060593:CDS
TCATCCAACAGATACCCTTT+TGG 0.400023 2.2:+17516523 MS.gene060593:CDS
ATAGTACCTTAACATATCTT+AGG 0.400121 2.2:+17516849 MS.gene060593:CDS
AGGGCTAAAGTGAAGGCATT+TGG 0.408888 2.2:-17516251 None:intergenic
ACTACCAGAAGTGGTAGAAT+TGG 0.411324 2.2:-17516801 None:intergenic
TTTATTAAGGTGCCTAATAA+GGG 0.413919 2.2:+17517325 MS.gene060593:CDS
ACCATTTGAGAGTAACCTTA+AGG 0.414604 2.2:-17516450 None:intergenic
CCAAATTTCCCACATCTCTC+TGG 0.417212 2.2:-17516989 None:intergenic
AACGATCGGAGCAGCTCTTC+CGG 0.424012 2.2:+17516288 MS.gene060593:CDS
TTTCATTACTACAAAATTGA+AGG 0.426055 2.2:+17517121 MS.gene060593:CDS
TAGATGTGCGTAGTGGTGTT+TGG 0.435236 2.2:+17516912 MS.gene060593:CDS
ACCTTAACATATCTTAGGCT+TGG 0.444137 2.2:+17516854 MS.gene060593:CDS
TCCAAGCCTAAGATATGTTA+AGG 0.448009 2.2:-17516855 None:intergenic
GCCTTAAGGTTACTCTCAAA+TGG 0.450182 2.2:+17516449 MS.gene060593:CDS
GCCAACACACTTACAATCCT+TGG 0.454150 2.2:-17517215 None:intergenic
AAAGTGAGAAATGCGAGTTT+GGG 0.455006 2.2:-17516056 None:intergenic
TTCACTTTAGCCCTTCGAAT+CGG 0.459599 2.2:+17516260 MS.gene060593:CDS
AACCAATATTTAATTGGCTT+AGG 0.460614 2.2:-17516680 None:intergenic
TTTGTAAATTCAGGTGACCT+TGG 0.482884 2.2:+17516143 MS.gene060593:CDS
ACTTCTGGTAGTAGTATCAT+TGG 0.485293 2.2:+17516812 MS.gene060593:CDS
TCAATGTGTTGCTTGTCCTC+TGG 0.491136 2.2:+17517027 MS.gene060593:CDS
GCAGCTCTTCCGGTGGGTAT+GGG 0.492435 2.2:+17516298 MS.gene060593:CDS
TTCAATGCTCCATTCCAAGT+TGG 0.505787 2.2:+17516212 MS.gene060593:CDS
CTTGTCTTGGCTAATGCTGA+TGG 0.505878 2.2:+17516383 MS.gene060593:CDS
CATACTCCTCCTAAAGGCTT+AGG 0.506091 2.2:-17517085 None:intergenic
AACACCTTGAGTTATCTTTG+TGG 0.506678 2.2:-17517246 None:intergenic
TTTACAACTGAAGCAAATCC+AGG 0.507847 2.2:-17517349 None:intergenic
GTTGCTTGTCCTCTGGAGAA+TGG 0.512120 2.2:+17517034 MS.gene060593:CDS
ATCGTTGAAGTCCGATTCGA+AGG 0.516738 2.2:-17516271 None:intergenic
GTTAAGGTACTATTATTCAC+TGG 0.525455 2.2:-17516839 None:intergenic
TAAATATTGATCAACCAAAA+GGG 0.527541 2.2:-17516537 None:intergenic
ATGCTGATGGAAGAATTGTT+TGG 0.528512 2.2:+17516396 MS.gene060593:CDS
TACATGAGTAAATACACTAC+TGG 0.539734 2.2:+17517154 MS.gene060593:CDS
GCATTGCATACTCCTCCTAA+AGG 0.549299 2.2:-17517091 None:intergenic
TGCTGATGGAAATCTTGTCT+TGG 0.551149 2.2:+17516370 MS.gene060593:CDS
TGGAGAATGGAATATTTGGT+TGG 0.554960 2.2:+17517047 MS.gene060593:CDS
GTCAATTGCCAGAGAGATGT+GGG 0.558292 2.2:+17516981 MS.gene060593:CDS
AATTGCATGAGCAATTAAGA+TGG 0.563809 2.2:-17516096 None:intergenic
AATGATACTACTACCAGAAG+TGG 0.564751 2.2:-17516810 None:intergenic
TCAACCAAAAGGGTATCTGT+TGG 0.567927 2.2:-17516527 None:intergenic
ACAAAGATAACTCAAGGTGT+TGG 0.569098 2.2:+17517248 MS.gene060593:CDS
CTTTGATGAAGATGAAGATG+AGG 0.577519 2.2:+17516952 MS.gene060593:CDS
CTGGTAGTAGTATCATTGGT+AGG 0.581267 2.2:+17516816 MS.gene060593:CDS
GATTCGAAGGGCTAAAGTGA+AGG 0.591835 2.2:-17516258 None:intergenic
CTTAATAAAACCCACGTGTG+TGG 0.596724 2.2:-17517311 None:intergenic
GATCGGAGCAGCTCTTCCGG+TGG 0.597266 2.2:+17516291 MS.gene060593:CDS
TGTAGTCCTAAGCCTTTAGG+AGG 0.598203 2.2:+17517079 MS.gene060593:CDS
TATTTGCTTCCCATACCCAC+CGG 0.610779 2.2:-17516307 None:intergenic
ATTCTACAATGAAGTCTCCA+AGG 0.612554 2.2:-17516160 None:intergenic
TGGGAAATTTGGGCTTTGTG+AGG 0.614311 2.2:+17517000 MS.gene060593:CDS
GCAAATAGAGGTAACCCAGT+TGG 0.619075 2.2:+17516323 MS.gene060593:CDS
GTTACTCTCAAATGGTAACA+TGG 0.622365 2.2:+17516457 MS.gene060593:CDS
ATCGGAGCAGCTCTTCCGGT+GGG 0.626587 2.2:+17516292 MS.gene060593:CDS
AAGGTGCCTAATAAGGGACC+TGG 0.628050 2.2:+17517331 MS.gene060593:CDS
TCTACCACAAAGATAACTCA+AGG 0.628662 2.2:+17517242 MS.gene060593:CDS
TGGGTATGGGAAGCAAATAG+AGG 0.632819 2.2:+17516311 MS.gene060593:CDS
TGTCAATTGCCAGAGAGATG+TGG 0.634284 2.2:+17516980 MS.gene060593:CDS
ACCAAGGATTGTAAGTGTGT+TGG 0.640719 2.2:+17517214 MS.gene060593:CDS
TCGAATCGGACTTCAACGAT+CGG 0.646165 2.2:+17516274 MS.gene060593:CDS
TTGTGCAAATAAATGTACCA+AGG 0.654693 2.2:+17517198 MS.gene060593:CDS
TCGTTGAAGTCCGATTCGAA+GGG 0.657162 2.2:-17516270 None:intergenic
GACTTCATTGTAGAATATGG+AGG 0.660683 2.2:+17516167 MS.gene060593:CDS
CCAAATATTCCATTCTCCAG+AGG 0.664062 2.2:-17517043 None:intergenic
TATTTCTTAGATGTGCGTAG+TGG 0.673826 2.2:+17516905 MS.gene060593:CDS
AGTTGAAAATACCACACACG+TGG 0.689573 2.2:+17517300 MS.gene060593:CDS
TTTGATGAAGATGAAGATGA+GGG 0.690735 2.2:+17516953 MS.gene060593:CDS
GTTGAAAATACCACACACGT+GGG 0.740438 2.2:+17517301 MS.gene060593:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACCTGAATTTACAAATTTAA+AGG - chr2.2:17516138-17516157 None:intergenic 20.0%
!! ACCTTTAAATTTGTAAATTC+AGG + chr2.2:17516134-17516153 MS.gene060593:CDS 20.0%
!! GATGAAAACCAATATTTAAT+TGG - chr2.2:17516689-17516708 None:intergenic 20.0%
!! TAAATATTGATCAACCAAAA+GGG - chr2.2:17516540-17516559 None:intergenic 20.0%
!! TTAAATATTGATCAACCAAA+AGG - chr2.2:17516541-17516560 None:intergenic 20.0%
!! TTTCATTACTACAAAATTGA+AGG + chr2.2:17517121-17517140 MS.gene060593:CDS 20.0%
!!! AATTTAAAGGTTTCATTTTG+TGG - chr2.2:17516125-17516144 None:intergenic 20.0%
!!! ATGGTTTTAATTGATTCTAA+AGG + chr2.2:17516476-17516495 MS.gene060593:CDS 20.0%
!!! ATTCTAAAGGTAAATTTGTT+TGG + chr2.2:17516489-17516508 MS.gene060593:CDS 20.0%
! ATAGTACCTTAACATATCTT+AGG + chr2.2:17516849-17516868 MS.gene060593:CDS 25.0%
! TAATATAAAGCCAAACCTTT+AGG - chr2.2:17516644-17516663 None:intergenic 25.0%
! TCAGAAAAAGAAAATGTTGA+TGG + chr2.2:17516596-17516615 MS.gene060593:CDS 25.0%
!! AACCAATATTTAATTGGCTT+AGG - chr2.2:17516683-17516702 None:intergenic 25.0%
!! GATCAATATTTAAAGCCTAA+TGG + chr2.2:17516548-17516567 MS.gene060593:CDS 25.0%
!! TTTATTAAGGTGCCTAATAA+GGG + chr2.2:17517325-17517344 MS.gene060593:CDS 25.0%
!!! AATATTGGTTTTCATCTTCT+TGG + chr2.2:17516693-17516712 MS.gene060593:CDS 25.0%
!!! GAAAATGGTACTTTTTCATT+AGG + chr2.2:17516347-17516366 MS.gene060593:CDS 25.0%
!!! TCTTGGTTTTCATTTGAAAA+AGG + chr2.2:17516710-17516729 MS.gene060593:CDS 25.0%
!!! TTTTATTAAGGTGCCTAATA+AGG + chr2.2:17517324-17517343 MS.gene060593:CDS 25.0%
AATCCATACTCAAAAGATTC+TGG - chr2.2:17516767-17516786 None:intergenic 30.0%
AATTGCATGAGCAATTAAGA+TGG - chr2.2:17516099-17516118 None:intergenic 30.0%
CAAACAAACACTTCCAATAA+AGG + chr2.2:17516419-17516438 MS.gene060593:CDS 30.0%
CTCCTAAGCCAATTAAATAT+TGG + chr2.2:17516678-17516697 MS.gene060593:CDS 30.0%
TACATGAGTAAATACACTAC+TGG + chr2.2:17517154-17517173 MS.gene060593:CDS 30.0%
TAGTGTTGTAAAAACCAACT+TGG - chr2.2:17516229-17516248 None:intergenic 30.0%
TTGTAAAAACCAACTTGGAA+TGG - chr2.2:17516224-17516243 None:intergenic 30.0%
TTGTGCAAATAAATGTACCA+AGG + chr2.2:17517198-17517217 MS.gene060593:CDS 30.0%
TTTGATGAAGATGAAGATGA+GGG + chr2.2:17516953-17516972 MS.gene060593:CDS 30.0%
! GTTAAGGTACTATTATTCAC+TGG - chr2.2:17516842-17516861 None:intergenic 30.0%
AAAGTGAGAAATGCGAGTTT+GGG - chr2.2:17516059-17516078 None:intergenic 35.0%
AACACCTTGAGTTATCTTTG+TGG - chr2.2:17517249-17517268 None:intergenic 35.0%
AATGATACTACTACCAGAAG+TGG - chr2.2:17516813-17516832 None:intergenic 35.0%
ACAAAGATAACTCAAGGTGT+TGG + chr2.2:17517248-17517267 MS.gene060593:CDS 35.0%
ACCATTTGAGAGTAACCTTA+AGG - chr2.2:17516453-17516472 None:intergenic 35.0%
ACCTTAACATATCTTAGGCT+TGG + chr2.2:17516854-17516873 MS.gene060593:CDS 35.0%
ACTTCTGGTAGTAGTATCAT+TGG + chr2.2:17516812-17516831 MS.gene060593:CDS 35.0%
ATGCTGATGGAAGAATTGTT+TGG + chr2.2:17516396-17516415 MS.gene060593:CDS 35.0%
ATTCTACAATGAAGTCTCCA+AGG - chr2.2:17516163-17516182 None:intergenic 35.0%
CTTTGATGAAGATGAAGATG+AGG + chr2.2:17516952-17516971 MS.gene060593:CDS 35.0%
GACTTCATTGTAGAATATGG+AGG + chr2.2:17516167-17516186 MS.gene060593:CDS 35.0%
GGAGACTTCATTGTAGAATA+TGG + chr2.2:17516164-17516183 MS.gene060593:CDS 35.0%
GTTACTCTCAAATGGTAACA+TGG + chr2.2:17516457-17516476 MS.gene060593:CDS 35.0%
TAAAGTGAGAAATGCGAGTT+TGG - chr2.2:17516060-17516079 None:intergenic 35.0%
TAAGGCAACAACACCTTTAT+TGG - chr2.2:17516435-17516454 None:intergenic 35.0%
TATCTTAGGCTTGGAATTGA+TGG + chr2.2:17516863-17516882 MS.gene060593:CDS 35.0%
TATTTCTTAGATGTGCGTAG+TGG + chr2.2:17516905-17516924 MS.gene060593:CDS 35.0%
TCCAAGCCTAAGATATGTTA+AGG - chr2.2:17516858-17516877 None:intergenic 35.0%
TCTACCACAAAGATAACTCA+AGG + chr2.2:17517242-17517261 MS.gene060593:CDS 35.0%
TGGAGAATGGAATATTTGGT+TGG + chr2.2:17517047-17517066 MS.gene060593:CDS 35.0%
TTTACAACTGAAGCAAATCC+AGG - chr2.2:17517352-17517371 None:intergenic 35.0%
TTTGTAAATTCAGGTGACCT+TGG + chr2.2:17516143-17516162 MS.gene060593:CDS 35.0%
! AAGTACCATTTTCACCAACT+GGG - chr2.2:17516340-17516359 None:intergenic 35.0%
!! AAAGTACCATTTTCACCAAC+TGG - chr2.2:17516341-17516360 None:intergenic 35.0%
!! AGCCTACTAACAAGTTTTGA+AGG - chr2.2:17516575-17516594 None:intergenic 35.0%
!! ATAAAGGTGTTGTTGCCTTA+AGG + chr2.2:17516435-17516454 MS.gene060593:CDS 35.0%
!! GATCCAGAATCTTTTGAGTA+TGG + chr2.2:17516761-17516780 MS.gene060593:CDS 35.0%
!! GTCCTTCAAAACTTGTTAGT+AGG + chr2.2:17516570-17516589 MS.gene060593:CDS 35.0%
!! TGGTCCTTATAGTTTGGTTT+TGG + chr2.2:17516616-17516635 MS.gene060593:CDS 35.0%
!! TGTTGATGGTCCTTATAGTT+TGG + chr2.2:17516610-17516629 MS.gene060593:CDS 35.0%
!!! ACAAGTTTTGAAGGACCATT+AGG - chr2.2:17516566-17516585 None:intergenic 35.0%
!!! ACTTTTTCATTAGGTGCTGA+TGG + chr2.2:17516356-17516375 MS.gene060593:CDS 35.0%
AAGTGTAGTCCTAAGCCTTT+AGG + chr2.2:17517076-17517095 MS.gene060593:CDS 40.0%
ACCAAGGATTGTAAGTGTGT+TGG + chr2.2:17517214-17517233 MS.gene060593:CDS 40.0%
ACTACCAGAAGTGGTAGAAT+TGG - chr2.2:17516804-17516823 None:intergenic 40.0%
AGTTGAAAATACCACACACG+TGG + chr2.2:17517300-17517319 MS.gene060593:CDS 40.0%
CAGAGAGATGTGGGAAATTT+GGG + chr2.2:17516990-17517009 MS.gene060593:CDS 40.0%
CCAAATATTCCATTCTCCAG+AGG - chr2.2:17517046-17517065 None:intergenic 40.0%
CTGGTAGTAGTATCATTGGT+AGG + chr2.2:17516816-17516835 MS.gene060593:CDS 40.0%
CTTAATAAAACCCACGTGTG+TGG - chr2.2:17517314-17517333 None:intergenic 40.0%
GCCTTAAGGTTACTCTCAAA+TGG + chr2.2:17516449-17516468 MS.gene060593:CDS 40.0%
GGCTCCAAAACCAAACTATA+AGG - chr2.2:17516623-17516642 None:intergenic 40.0%
GTTGAAAATACCACACACGT+GGG + chr2.2:17517301-17517320 MS.gene060593:CDS 40.0%
TGCTGATGGAAATCTTGTCT+TGG + chr2.2:17516370-17516389 MS.gene060593:CDS 40.0%
TTCAATGCTCCATTCCAAGT+TGG + chr2.2:17516212-17516231 MS.gene060593:CDS 40.0%
TTCACTTTAGCCCTTCGAAT+CGG + chr2.2:17516260-17516279 MS.gene060593:CDS 40.0%
! CCTCTGGAGAATGGAATATT+TGG + chr2.2:17517043-17517062 MS.gene060593:CDS 40.0%
! TCATCCAACAGATACCCTTT+TGG + chr2.2:17516523-17516542 MS.gene060593:CDS 40.0%
!! TCAACCAAAAGGGTATCTGT+TGG - chr2.2:17516530-17516549 None:intergenic 40.0%
!!! AGTTTGGTTTTGGAGCCTAA+AGG + chr2.2:17516626-17516645 MS.gene060593:CDS 40.0%
!!! CACACACGTGGGTTTTATTA+AGG + chr2.2:17517312-17517331 MS.gene060593:CDS 40.0%
CATACTCCTCCTAAAGGCTT+AGG - chr2.2:17517088-17517107 None:intergenic 45.0%
CCAAATTTCCCACATCTCTC+TGG - chr2.2:17516992-17517011 None:intergenic 45.0%
CCAGAGAGATGTGGGAAATT+TGG + chr2.2:17516989-17517008 MS.gene060593:CDS 45.0%
CTTGTCTTGGCTAATGCTGA+TGG + chr2.2:17516383-17516402 MS.gene060593:CDS 45.0%
GATTCGAAGGGCTAAAGTGA+AGG - chr2.2:17516261-17516280 None:intergenic 45.0%
GCAAATAGAGGTAACCCAGT+TGG + chr2.2:17516323-17516342 MS.gene060593:CDS 45.0%
GCAAATCCAGGTCCCTTATT+AGG - chr2.2:17517340-17517359 None:intergenic 45.0%
GCATTGCATACTCCTCCTAA+AGG - chr2.2:17517094-17517113 None:intergenic 45.0%
GCCAACACACTTACAATCCT+TGG - chr2.2:17517218-17517237 None:intergenic 45.0%
GTCAATTGCCAGAGAGATGT+GGG + chr2.2:17516981-17517000 MS.gene060593:CDS 45.0%
GTTGCCAATTCTACCACTTC+TGG + chr2.2:17516797-17516816 MS.gene060593:CDS 45.0%
TAGATGTGCGTAGTGGTGTT+TGG + chr2.2:17516912-17516931 MS.gene060593:CDS 45.0%
TATTTGCTTCCCATACCCAC+CGG - chr2.2:17516310-17516329 None:intergenic 45.0%
TCGAATCGGACTTCAACGAT+CGG + chr2.2:17516274-17516293 MS.gene060593:CDS 45.0%
TGGGTATGGGAAGCAAATAG+AGG + chr2.2:17516311-17516330 MS.gene060593:CDS 45.0%
TGTAGTCCTAAGCCTTTAGG+AGG + chr2.2:17517079-17517098 MS.gene060593:CDS 45.0%
TGTCAATTGCCAGAGAGATG+TGG + chr2.2:17516980-17516999 MS.gene060593:CDS 45.0%
! ATCGTTGAAGTCCGATTCGA+AGG - chr2.2:17516274-17516293 None:intergenic 45.0%
! TCGTTGAAGTCCGATTCGAA+GGG - chr2.2:17516273-17516292 None:intergenic 45.0%
! TGGGAAATTTGGGCTTTGTG+AGG + chr2.2:17517000-17517019 MS.gene060593:CDS 45.0%
!! AGGGCTAAAGTGAAGGCATT+TGG - chr2.2:17516254-17516273 None:intergenic 45.0%
!! GGTAACCCAGTTGGTGAAAA+TGG + chr2.2:17516332-17516351 MS.gene060593:CDS 45.0%
!! TCAATGTGTTGCTTGTCCTC+TGG + chr2.2:17517027-17517046 MS.gene060593:CDS 45.0%
!!! GGTTTTGGAGCCTAAAGGTT+TGG + chr2.2:17516631-17516650 MS.gene060593:CDS 45.0%
! AAGGTGCCTAATAAGGGACC+TGG + chr2.2:17517331-17517350 MS.gene060593:CDS 50.0%
! GTTGCTTGTCCTCTGGAGAA+TGG + chr2.2:17517034-17517053 MS.gene060593:CDS 50.0%
AACGATCGGAGCAGCTCTTC+CGG + chr2.2:17516288-17516307 MS.gene060593:CDS 55.0%
AGCAGCTCTTCCGGTGGGTA+TGG + chr2.2:17516297-17516316 MS.gene060593:CDS 60.0%
ATCGGAGCAGCTCTTCCGGT+GGG + chr2.2:17516292-17516311 MS.gene060593:CDS 60.0%
GCAGCTCTTCCGGTGGGTAT+GGG + chr2.2:17516298-17516317 MS.gene060593:CDS 60.0%
GATCGGAGCAGCTCTTCCGG+TGG + chr2.2:17516291-17516310 MS.gene060593:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 17516038 17517393 17516038 ID=MS.gene060593
chr2.2 mRNA 17516038 17517393 17516038 ID=MS.gene060593.t1;Parent=MS.gene060593
chr2.2 exon 17516038 17517393 17516038 ID=MS.gene060593.t1.exon1;Parent=MS.gene060593.t1
chr2.2 CDS 17516038 17517393 17516038 ID=cds.MS.gene060593.t1;Parent=MS.gene060593.t1
Gene Sequence

>MS.gene060593

ATGTCTATTTTTCTTAATCCCAAACTCGCATTTCTCACTTTATTGTTCTTTTCATCTTCCATCTTAATTGCTCATGCAATTGTTCCACAAAATGAAACCTTTAAATTTGTAAATTCAGGTGACCTTGGAGACTTCATTGTAGAATATGGAGGTGATTACAGAATGATAAGCATATTCAATGCTCCATTCCAAGTTGGTTTTTACAACACTACTCCAAATGCCTTCACTTTAGCCCTTCGAATCGGACTTCAACGATCGGAGCAGCTCTTCCGGTGGGTATGGGAAGCAAATAGAGGTAACCCAGTTGGTGAAAATGGTACTTTTTCATTAGGTGCTGATGGAAATCTTGTCTTGGCTAATGCTGATGGAAGAATTGTTTGGCAAACAAACACTTCCAATAAAGGTGTTGTTGCCTTAAGGTTACTCTCAAATGGTAACATGGTTTTAATTGATTCTAAAGGTAAATTTGTTTGGCAAAGTTTTGATCATCCAACAGATACCCTTTTGGTTGATCAATATTTAAAGCCTAATGGTCCTTCAAAACTTGTTAGTAGGCTTTCAGAAAAAGAAAATGTTGATGGTCCTTATAGTTTGGTTTTGGAGCCTAAAGGTTTGGCTTTATATTATAAGAGCAAAAATTCTCCTAAGCCAATTAAATATTGGTTTTCATCTTCTTGGTTTTCATTTGAAAAAGGTTCATTAGAAAATGTCACACTAAAATCTGATCCAGAATCTTTTGAGTATGGATTTGATTTTTTTGTTGCCAATTCTACCACTTCTGGTAGTAGTATCATTGGTAGGCCAGTGAATAATAGTACCTTAACATATCTTAGGCTTGGAATTGATGGTAACATCAAATTTCACACATATTTCTTAGATGTGCGTAGTGGTGTTTGGAAAGTGACATACACTCTCTTTGATGAAGATGAAGATGAGGGTGAGTGTCAATTGCCAGAGAGATGTGGGAAATTTGGGCTTTGTGAGGATAATCAATGTGTTGCTTGTCCTCTGGAGAATGGAATATTTGGTTGGAGTAATAAGTGTAGTCCTAAGCCTTTAGGAGGAGTATGCAATGCAAGTGAATTTCATTACTACAAAATTGAAGGAGTTGAGCATTACATGAGTAAATACACTACTGGTGATAGAGTAAGTGAAGATAATTGTGCAAATAAATGTACCAAGGATTGTAAGTGTGTTGGCTATTTCTACCACAAAGATAACTCAAGGTGTTGGATAGCTTATGATCTTCAAACTCTTACTAGAGTTGAAAATACCACACACGTGGGTTTTATTAAGGTGCCTAATAAGGGACCTGGATTTGCTTCAGTTGTAAATTCACACAGTTTGCTGCAGTAA

Protein sequence

>MS.gene060593.t1

MSIFLNPKLAFLTLLFFSSSILIAHAIVPQNETFKFVNSGDLGDFIVEYGGDYRMISIFNAPFQVGFYNTTPNAFTLALRIGLQRSEQLFRWVWEANRGNPVGENGTFSLGADGNLVLANADGRIVWQTNTSNKGVVALRLLSNGNMVLIDSKGKFVWQSFDHPTDTLLVDQYLKPNGPSKLVSRLSEKENVDGPYSLVLEPKGLALYYKSKNSPKPIKYWFSSSWFSFEKGSLENVTLKSDPESFEYGFDFFVANSTTSGSSIIGRPVNNSTLTYLRLGIDGNIKFHTYFLDVRSGVWKVTYTLFDEDEDEGECQLPERCGKFGLCEDNQCVACPLENGIFGWSNKCSPKPLGGVCNASEFHYYKIEGVEHYMSKYTTGDRVSEDNCANKCTKDCKCVGYFYHKDNSRCWIAYDLQTLTRVENTTHVGFIKVPNKGPGFASVVNSHSLLQ