Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47551.t1 | XP_013456900.1 | 95.5 | 286 | 9 | 2 | 1 | 282 | 1 | 286 | 2.80E-145 | 524.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47551.t1 | Q8GYB1 | 78.2 | 216 | 45 | 2 | 60 | 274 | 71 | 285 | 2.9e-90 | 333.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47551.t1 | A0A072UNI2 | 95.5 | 286 | 9 | 2 | 1 | 282 | 1 | 286 | 2.0e-145 | 524.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050114 | MS.gene47551 | 0.845223 | 4.64E-59 | -1.69E-46 |
| MS.gene050117 | MS.gene47551 | 0.802734 | 4.87E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene47551 | 0.808196 | 3.49E-50 | -1.69E-46 |
| MS.gene058638 | MS.gene47551 | 0.816461 | 5.47E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene47551 | 0.821303 | 4.34E-53 | -1.69E-46 |
| MS.gene058758 | MS.gene47551 | 0.825993 | 3.46E-54 | -1.69E-46 |
| MS.gene060296 | MS.gene47551 | 0.802792 | 4.74E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene47551 | 0.825146 | 5.50E-54 | -1.69E-46 |
| MS.gene060870 | MS.gene47551 | 0.822246 | 2.62E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47551.t1 | MTR_4g087905 | 95.455 | 286 | 9 | 2 | 1 | 282 | 1 | 286 | 0.0 | 550 |
| MS.gene47551.t1 | MTR_2g015380 | 55.556 | 243 | 79 | 4 | 27 | 269 | 2 | 215 | 6.09e-91 | 269 |
| MS.gene47551.t1 | MTR_2g015380 | 46.091 | 243 | 62 | 5 | 27 | 269 | 2 | 175 | 5.08e-64 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47551.t1 | AT1G28960 | 70.775 | 284 | 77 | 4 | 3 | 281 | 10 | 292 | 4.60e-135 | 384 |
| MS.gene47551.t1 | AT1G28960 | 70.775 | 284 | 77 | 4 | 3 | 281 | 10 | 292 | 4.60e-135 | 384 |
| MS.gene47551.t1 | AT1G28960 | 70.775 | 284 | 77 | 4 | 3 | 281 | 10 | 292 | 4.60e-135 | 384 |
| MS.gene47551.t1 | AT1G28960 | 71.480 | 277 | 73 | 4 | 3 | 274 | 10 | 285 | 4.53e-133 | 378 |
| MS.gene47551.t1 | AT1G28960 | 71.480 | 277 | 73 | 4 | 3 | 274 | 10 | 285 | 4.53e-133 | 378 |
| MS.gene47551.t1 | AT2G33980 | 68.421 | 247 | 71 | 3 | 30 | 274 | 18 | 259 | 2.10e-115 | 332 |
| MS.gene47551.t1 | AT2G33980 | 68.421 | 247 | 71 | 3 | 30 | 274 | 18 | 259 | 2.10e-115 | 332 |
| MS.gene47551.t1 | AT2G33980 | 68.421 | 247 | 71 | 3 | 30 | 274 | 18 | 259 | 8.29e-115 | 332 |
| MS.gene47551.t1 | AT2G33980 | 68.421 | 247 | 71 | 3 | 30 | 274 | 18 | 259 | 1.30e-114 | 333 |
| MS.gene47551.t1 | AT5G45940 | 61.376 | 189 | 69 | 2 | 85 | 269 | 29 | 217 | 8.63e-79 | 238 |
| MS.gene47551.t1 | AT5G45940 | 63.281 | 128 | 44 | 1 | 85 | 209 | 29 | 156 | 4.90e-51 | 165 |
| MS.gene47551.t1 | AT5G45940 | 64.286 | 126 | 42 | 1 | 85 | 207 | 29 | 154 | 1.26e-50 | 164 |
Find 71 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTGTGGAACTTTGAATT+TGG | 0.148694 | 4.3:-25485785 | None:intergenic |
| TGAATCATGGTAGCTGATTC+AGG | 0.246118 | 4.3:-25483467 | None:intergenic |
| GTAACAACATTGACTAGTTT+TGG | 0.246703 | 4.3:-25484035 | None:intergenic |
| TTCTTAGGACTAAATTTATC+TGG | 0.253323 | 4.3:-25483494 | None:intergenic |
| CGAGAGGCAGAAGAGGAAAT+TGG | 0.270083 | 4.3:+25484005 | MS.gene47551:CDS |
| TCTTGAACCATTCTTGTCTA+AGG | 0.274255 | 4.3:+25484061 | MS.gene47551:CDS |
| CTCTGTTCCAAAACATCTTC+AGG | 0.287071 | 4.3:-25483401 | None:intergenic |
| TGGCAAAGTTGTTTCTCAAT+TGG | 0.304222 | 4.3:+25483439 | MS.gene47551:CDS |
| ATCAAAACAGCAGCTTTCTT+AGG | 0.317340 | 4.3:-25483509 | None:intergenic |
| ACCTGTGGAACTTTGAATTT+GGG | 0.326845 | 4.3:-25485784 | None:intergenic |
| GGCAAAGTTGTTTCTCAATT+GGG | 0.351294 | 4.3:+25483440 | MS.gene47551:CDS |
| AAGGTGATGATGGGGATCTA+AGG | 0.355981 | 4.3:+25483543 | MS.gene47551:CDS |
| TTGGTGACAGATACTGTTCT+TGG | 0.364656 | 4.3:-25483290 | None:intergenic |
| CGATGACAGGAACTACTCTT+AGG | 0.397188 | 4.3:-25485405 | None:intergenic |
| TGCAGCCCTAATCAAAATTC+CGG | 0.409951 | 4.3:-25485719 | None:intergenic |
| TCAGGAAGAGAGAGAGTGGA+TGG | 0.414184 | 4.3:+25485621 | MS.gene47551:CDS |
| CCTTCCTCCGCTTTCCCACC+AGG | 0.426104 | 4.3:-25483954 | None:intergenic |
| GAAAGCGGAGGAAGGGGATA+AGG | 0.452799 | 4.3:+25483962 | MS.gene47551:CDS |
| TGTTTATTTGAAGGTGATGA+TGG | 0.461797 | 4.3:+25483533 | MS.gene47551:CDS |
| ACCTGAGTGAGTAGAGAGCT+TGG | 0.464566 | 4.3:-25483588 | None:intergenic |
| AATACTGATTCCACTTCTGC+AGG | 0.466410 | 4.3:-25485469 | None:intergenic |
| ACTTCTGCAGGATTCAGAAC+AGG | 0.470641 | 4.3:-25485457 | None:intergenic |
| TGGTGGGAAAGCGGAGGAAG+GGG | 0.473889 | 4.3:+25483956 | MS.gene47551:CDS |
| GCTTTAAGCAGGATGAAAAT+CGG | 0.478548 | 4.3:+25485596 | MS.gene47551:intron |
| CCTGGTGGGAAAGCGGAGGA+AGG | 0.480967 | 4.3:+25483954 | MS.gene47551:CDS |
| TCCAAAACATCTTCAGGAAA+AGG | 0.484289 | 4.3:-25483395 | None:intergenic |
| GAGAGGCAGAAGAGGAAATT+GGG | 0.494487 | 4.3:+25484006 | MS.gene47551:CDS |
| TGTTCTGAATCCTGCAGAAG+TGG | 0.496762 | 4.3:+25485459 | MS.gene47551:CDS |
| CTGGTGGGAAAGCGGAGGAA+GGG | 0.497359 | 4.3:+25483955 | MS.gene47551:CDS |
| GCAGGATGAAAATCGGAGTC+AGG | 0.500021 | 4.3:+25485603 | MS.gene47551:intron |
| ACCTTGAGAAACATTTCTAA+AGG | 0.503154 | 4.3:-25485499 | None:intergenic |
| TCCCAAATTCAAAGTTCCAC+AGG | 0.509189 | 4.3:+25485783 | MS.gene47551:CDS |
| CTGCATCAATTGTGTACAAA+CGG | 0.513281 | 4.3:+25485737 | MS.gene47551:CDS |
| CTCATATGGGGATTGACTGC+CGG | 0.519065 | 4.3:+25485700 | MS.gene47551:CDS |
| GGAAGAAGAATCCATGACTT+TGG | 0.522178 | 4.3:-25483309 | None:intergenic |
| GGCAGAAGAGGAAATTGGGT+TGG | 0.528513 | 4.3:+25484010 | MS.gene47551:CDS |
| ATGGATTCTTCTTCCAGTGG+TGG | 0.530689 | 4.3:+25483317 | MS.gene47551:CDS |
| TCATGAAGTATGCCGATGAC+AGG | 0.534330 | 4.3:-25485418 | None:intergenic |
| CAGGAAGAGAGAGAGTGGAT+GGG | 0.539082 | 4.3:+25485622 | MS.gene47551:CDS |
| GTTTATTTGAAGGTGATGAT+GGG | 0.545292 | 4.3:+25483534 | MS.gene47551:CDS |
| ACCTTTAGAAATGTTTCTCA+AGG | 0.548045 | 4.3:+25485498 | MS.gene47551:CDS |
| GGATTCTGCTCTATGAAAGC+CGG | 0.548477 | 4.3:-25485763 | None:intergenic |
| AGGTGATGATGGGGATCTAA+GGG | 0.549052 | 4.3:+25483544 | MS.gene47551:CDS |
| TGCAAAACGAGAGGCAGAAG+AGG | 0.549211 | 4.3:+25483998 | MS.gene47551:CDS |
| ATCTCAGAGACTTCTTGCGT+TGG | 0.549765 | 4.3:+25483340 | MS.gene47551:CDS |
| AGTTCCACAGGTTGTAAGCA+AGG | 0.560370 | 4.3:+25485795 | MS.gene47551:CDS |
| CTATCCTTGCTTACAACCTG+TGG | 0.562710 | 4.3:-25485799 | None:intergenic |
| ATAGATACCTTAGACAAGAA+TGG | 0.563801 | 4.3:-25484068 | None:intergenic |
| AATTGTGTACAAACGGCCAC+CGG | 0.564192 | 4.3:+25485744 | MS.gene47551:CDS |
| TCTTCAGGAAAAGGTGGTGG+TGG | 0.564320 | 4.3:-25483386 | None:intergenic |
| GTCATTGCCTGGTGGGAAAG+CGG | 0.565959 | 4.3:+25483947 | MS.gene47551:CDS |
| AGTATCTGTCACCAAAGTCA+TGG | 0.580073 | 4.3:+25483298 | MS.gene47551:CDS |
| CTAAGAGTAGTTCCTGTCAT+CGG | 0.582497 | 4.3:+25485406 | MS.gene47551:CDS |
| GGAGTCAGGAAGAGAGAGAG+TGG | 0.584588 | 4.3:+25485617 | MS.gene47551:CDS |
| GTAGGTGAAGTGTCATTGCC+TGG | 0.586937 | 4.3:+25483936 | MS.gene47551:intron |
| AGGATAGTTCAATGACTTGA+CGG | 0.587268 | 4.3:+25485815 | MS.gene47551:CDS |
| CGCGGCCACTGCAAAACGAG+AGG | 0.591310 | 4.3:+25483989 | MS.gene47551:CDS |
| ACATCTTCAGGAAAAGGTGG+TGG | 0.591697 | 4.3:-25483389 | None:intergenic |
| TCCAAGCTCTCTACTCACTC+AGG | 0.594205 | 4.3:+25483587 | MS.gene47551:CDS |
| GTCATGGATTCTTCTTCCAG+TGG | 0.604832 | 4.3:+25483314 | MS.gene47551:CDS |
| TGACAGGAACTACTCTTAGG+AGG | 0.607814 | 4.3:-25485402 | None:intergenic |
| AAGTCTCTGAGATCCACCAC+TGG | 0.613439 | 4.3:-25483330 | None:intergenic |
| TTTATTTGAAGGTGATGATG+GGG | 0.628042 | 4.3:+25483535 | MS.gene47551:CDS |
| AAAACATCTTCAGGAAAAGG+TGG | 0.635918 | 4.3:-25483392 | None:intergenic |
| GAACAGAGCATTGAAGAGAG+TGG | 0.639203 | 4.3:+25483416 | MS.gene47551:CDS |
| TTCTGCTCTATGAAAGCCGG+TGG | 0.643205 | 4.3:-25485760 | None:intergenic |
| GTGAAGTGTCATTGCCTGGT+GGG | 0.658192 | 4.3:+25483940 | MS.gene47551:CDS |
| ATTGCCTGGTGGGAAAGCGG+AGG | 0.658525 | 4.3:+25483950 | MS.gene47551:CDS |
| CAGAGCATTGAAGAGAGTGG+TGG | 0.680698 | 4.3:+25483419 | MS.gene47551:CDS |
| GGTGAAGTGTCATTGCCTGG+TGG | 0.686704 | 4.3:+25483939 | MS.gene47551:intron |
| GGAAGGGGATAAGGACGACG+CGG | 0.736631 | 4.3:+25483971 | MS.gene47551:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAATCATTTTAAGAAAA+GGG | - | chr4.3:25484630-25484649 | None:intergenic | 10.0% |
| !!! | TTATAAATCATTTTAAGAAA+AGG | - | chr4.3:25484631-25484650 | None:intergenic | 10.0% |
| !!! | AATCAATTTGAGAAATTTTT+CGG | + | chr4.3:25485100-25485119 | MS.gene47551:intron | 15.0% |
| !!! | TTTTCTTTAATAGGAAAAAA+AGG | - | chr4.3:25484784-25484803 | None:intergenic | 15.0% |
| !! | GGGTTATAAATTTGTATTAT+TGG | + | chr4.3:25485237-25485256 | MS.gene47551:intron | 20.0% |
| !! | TTTGGTTATTTGAATTTAGA+GGG | + | chr4.3:25483875-25483894 | MS.gene47551:intron | 20.0% |
| !!! | GAAATTTATTTGTTGGATAA+TGG | + | chr4.3:25485122-25485141 | MS.gene47551:intron | 20.0% |
| !!! | GTTTTGATTTGTTTATTTGA+AGG | + | chr4.3:25483524-25483543 | MS.gene47551:CDS | 20.0% |
| !!! | TACTTTAGTTATTGTGATTT+TGG | + | chr4.3:25483857-25483876 | MS.gene47551:intron | 20.0% |
| !!! | TTTCAGCAATTTTCTTTAAT+AGG | - | chr4.3:25484793-25484812 | None:intergenic | 20.0% |
| !!! | TTTTGGTTATTTGAATTTAG+AGG | + | chr4.3:25483874-25483893 | MS.gene47551:intron | 20.0% |
| !!! | TTTTTCGGAAATTTATTTGT+TGG | + | chr4.3:25485115-25485134 | MS.gene47551:intron | 20.0% |
| !!! | TTTTTTTAGACAAATGTTAG+TGG | + | chr4.3:25483690-25483709 | MS.gene47551:intron | 20.0% |
| ! | AATTCCTGAAAACAATAAAC+AGG | - | chr4.3:25484667-25484686 | None:intergenic | 25.0% |
| ! | ACTTCATTCTTGAATATCAT+CGG | + | chr4.3:25484400-25484419 | MS.gene47551:intron | 25.0% |
| ! | AGCAGAAAAAATATCTCATA+TGG | + | chr4.3:25485686-25485705 | MS.gene47551:CDS | 25.0% |
| ! | CAGAAAAAATATCTCATATG+GGG | + | chr4.3:25485688-25485707 | MS.gene47551:CDS | 25.0% |
| ! | GATACAAATAAAACTAAGCA+TGG | - | chr4.3:25485526-25485545 | None:intergenic | 25.0% |
| ! | GCAGAAAAAATATCTCATAT+GGG | + | chr4.3:25485687-25485706 | MS.gene47551:CDS | 25.0% |
| ! | TGTCTTTAAATCATGATTTG+TGG | + | chr4.3:25484236-25484255 | MS.gene47551:intron | 25.0% |
| ! | TTCTTAGGACTAAATTTATC+TGG | - | chr4.3:25483497-25483516 | None:intergenic | 25.0% |
| !! | GTATTATATTTAGCTCATGA+AGG | + | chr4.3:25484258-25484277 | MS.gene47551:intron | 25.0% |
| !! | TTTATCTGGATTTTGAATCA+TGG | - | chr4.3:25483483-25483502 | None:intergenic | 25.0% |
| !!! | CTAGAAAATGTTGATTTTGT+TGG | + | chr4.3:25484211-25484230 | MS.gene47551:intron | 25.0% |
| AAATTTATGTCTGCGATTGA+TGG | + | chr4.3:25484165-25484184 | MS.gene47551:intron | 30.0% | |
| AATTTAGAGGGAATGAATTG+AGG | + | chr4.3:25483887-25483906 | MS.gene47551:intron | 30.0% | |
| ACCTTGAGAAACATTTCTAA+AGG | - | chr4.3:25485502-25485521 | None:intergenic | 30.0% | |
| ATAGATACCTTAGACAAGAA+TGG | - | chr4.3:25484071-25484090 | None:intergenic | 30.0% | |
| ATTTAGAGGGAATGAATTGA+GGG | + | chr4.3:25483888-25483907 | MS.gene47551:intron | 30.0% | |
| CATAGATTCAAAATTCCAAG+TGG | - | chr4.3:25484145-25484164 | None:intergenic | 30.0% | |
| CCAAGACAACAATCATAATA+AGG | - | chr4.3:25484513-25484532 | None:intergenic | 30.0% | |
| CCTTATTATGATTGTTGTCT+TGG | + | chr4.3:25484510-25484529 | MS.gene47551:intron | 30.0% | |
| CTAAGAAATGTTGCATTCAA+TGG | + | chr4.3:25484748-25484767 | MS.gene47551:intron | 30.0% | |
| CTGATGTAAACAAACTGATT+AGG | + | chr4.3:25484692-25484711 | MS.gene47551:intron | 30.0% | |
| GAGGAATAGACTAATAGAAA+AGG | - | chr4.3:25485303-25485322 | None:intergenic | 30.0% | |
| GCTGTAAAAGAAACAATGAT+AGG | - | chr4.3:25485381-25485400 | None:intergenic | 30.0% | |
| GTTTATTTGAAGGTGATGAT+GGG | + | chr4.3:25483534-25483553 | MS.gene47551:CDS | 30.0% | |
| TAACAACACTCCATAGATTT+AGG | + | chr4.3:25485015-25485034 | MS.gene47551:intron | 30.0% | |
| TGTTTATTTGAAGGTGATGA+TGG | + | chr4.3:25483533-25483552 | MS.gene47551:CDS | 30.0% | |
| TTAATTGAGTATTCTCCACT+TGG | + | chr4.3:25484127-25484146 | MS.gene47551:intron | 30.0% | |
| ! | ACCTTTAGAAATGTTTCTCA+AGG | + | chr4.3:25485498-25485517 | MS.gene47551:CDS | 30.0% |
| ! | CTAATCAGTTTGTTTACATC+AGG | - | chr4.3:25484694-25484713 | None:intergenic | 30.0% |
| ! | CTATCCTGTTTATTGTTTTC+AGG | + | chr4.3:25484660-25484679 | MS.gene47551:intron | 30.0% |
| ! | TTTATTTGAAGGTGATGATG+GGG | + | chr4.3:25483535-25483554 | MS.gene47551:CDS | 30.0% |
| !!! | GTAACAACATTGACTAGTTT+TGG | - | chr4.3:25484038-25484057 | None:intergenic | 30.0% |
| !!! | TGCATAAAGTTTTGAAACTG+TGG | - | chr4.3:25485148-25485167 | None:intergenic | 30.0% |
| AAAACATCTTCAGGAAAAGG+TGG | - | chr4.3:25483395-25483414 | None:intergenic | 35.0% | |
| AAAAGTCATGTATCCATTGC+AGG | + | chr4.3:25484838-25484857 | MS.gene47551:intron | 35.0% | |
| AAAGCATACGTTCGTTATTG+TGG | - | chr4.3:25484892-25484911 | None:intergenic | 35.0% | |
| AACCATTTGCCCAATAGTAT+AGG | - | chr4.3:25483819-25483838 | None:intergenic | 35.0% | |
| AACCTGTGGAACTTTGAATT+TGG | - | chr4.3:25485788-25485807 | None:intergenic | 35.0% | |
| AAGTATGACCATTTCAGAGT+CGG | + | chr4.3:25485203-25485222 | MS.gene47551:intron | 35.0% | |
| ACCTGTGGAACTTTGAATTT+GGG | - | chr4.3:25485787-25485806 | None:intergenic | 35.0% | |
| ACGTTCTTATTAGCAACGAT+TGG | + | chr4.3:25485070-25485089 | MS.gene47551:intron | 35.0% | |
| ATACTATTGGGCAAATGGTT+TGG | + | chr4.3:25483819-25483838 | MS.gene47551:intron | 35.0% | |
| ATCAAAACAGCAGCTTTCTT+AGG | - | chr4.3:25483512-25483531 | None:intergenic | 35.0% | |
| ATGTTTACATTCCCTGTTGT+TGG | + | chr4.3:25485265-25485284 | MS.gene47551:intron | 35.0% | |
| CTGCATCAATTGTGTACAAA+CGG | + | chr4.3:25485737-25485756 | MS.gene47551:CDS | 35.0% | |
| GCACATACACTTCTCATATT+AGG | - | chr4.3:25483762-25483781 | None:intergenic | 35.0% | |
| GGGTATGTATCTGATTCTTT+AGG | - | chr4.3:25484610-25484629 | None:intergenic | 35.0% | |
| GTCTGTATAAAGTAATGCAG+TGG | + | chr4.3:25484558-25484577 | MS.gene47551:intron | 35.0% | |
| GTGTAAACTATCCAACAACA+GGG | - | chr4.3:25485279-25485298 | None:intergenic | 35.0% | |
| GTTATGCTGTCCTAAATCTA+TGG | - | chr4.3:25485028-25485047 | None:intergenic | 35.0% | |
| TACTATTGGGCAAATGGTTT+GGG | + | chr4.3:25483820-25483839 | MS.gene47551:intron | 35.0% | |
| TCCAAAACATCTTCAGGAAA+AGG | - | chr4.3:25483398-25483417 | None:intergenic | 35.0% | |
| TCTTGAACCATTCTTGTCTA+AGG | + | chr4.3:25484061-25484080 | MS.gene47551:CDS | 35.0% | |
| TGTGTAAACTATCCAACAAC+AGG | - | chr4.3:25485280-25485299 | None:intergenic | 35.0% | |
| ! | ACCTTTTCCTGAAGATGTTT+TGG | + | chr4.3:25483394-25483413 | MS.gene47551:CDS | 35.0% |
| ! | GCTTTAAGCAGGATGAAAAT+CGG | + | chr4.3:25485596-25485615 | MS.gene47551:intron | 35.0% |
| ! | GGATACATGACTTTTACAGT+TGG | - | chr4.3:25484833-25484852 | None:intergenic | 35.0% |
| ! | GGTGTGTGTGTTTTATATGT+AGG | + | chr4.3:25483918-25483937 | MS.gene47551:intron | 35.0% |
| ! | GTATGCTTTGAACTAGATAG+AGG | + | chr4.3:25484903-25484922 | MS.gene47551:intron | 35.0% |
| ! | TACATGACTTTTACAGTTGG+TGG | - | chr4.3:25484830-25484849 | None:intergenic | 35.0% |
| !! | GGCAAAGTTGTTTCTCAATT+GGG | + | chr4.3:25483440-25483459 | MS.gene47551:CDS | 35.0% |
| !! | TGGCAAAGTTGTTTCTCAAT+TGG | + | chr4.3:25483439-25483458 | MS.gene47551:CDS | 35.0% |
| AAATTTATAACCCGTGACCG+CGG | - | chr4.3:25485230-25485249 | None:intergenic | 40.0% | |
| ACTATTGGGCAAATGGTTTG+GGG | + | chr4.3:25483821-25483840 | MS.gene47551:intron | 40.0% | |
| ACTTAGTGCTCAGCATAAAC+AGG | + | chr4.3:25484975-25484994 | MS.gene47551:intron | 40.0% | |
| AGCCTATACTATTGGGCAAA+TGG | + | chr4.3:25483814-25483833 | MS.gene47551:intron | 40.0% | |
| AGTATCTGTCACCAAAGTCA+TGG | + | chr4.3:25483298-25483317 | MS.gene47551:CDS | 40.0% | |
| AGTCTATTCCTCATCTGCTT+CGG | + | chr4.3:25485311-25485330 | MS.gene47551:intron | 40.0% | |
| ATTTGCCCAATAGTATAGGC+TGG | - | chr4.3:25483815-25483834 | None:intergenic | 40.0% | |
| CCATTGCAGGTCATTAAACT+GGG | + | chr4.3:25484851-25484870 | MS.gene47551:intron | 40.0% | |
| CTAAGAGTAGTTCCTGTCAT+CGG | + | chr4.3:25485406-25485425 | MS.gene47551:CDS | 40.0% | |
| CTCTGTTCCAAAACATCTTC+AGG | - | chr4.3:25483404-25483423 | None:intergenic | 40.0% | |
| GGAAGAAGAATCCATGACTT+TGG | - | chr4.3:25483312-25483331 | None:intergenic | 40.0% | |
| TAAAGTAATGCAGTGGCCAT+TGG | + | chr4.3:25484565-25484584 | MS.gene47551:intron | 40.0% | |
| TACTTATTCCTCACACAGCA+TGG | - | chr4.3:25484289-25484308 | None:intergenic | 40.0% | |
| TCCATTGCAGGTCATTAAAC+TGG | + | chr4.3:25484850-25484869 | MS.gene47551:intron | 40.0% | |
| TCCCAAATTCAAAGTTCCAC+AGG | + | chr4.3:25485783-25485802 | MS.gene47551:CDS | 40.0% | |
| TGATAGGTGAGATGAAGTAC+TGG | - | chr4.3:25485365-25485384 | None:intergenic | 40.0% | |
| TGCAGCCCTAATCAAAATTC+CGG | - | chr4.3:25485722-25485741 | None:intergenic | 40.0% | |
| TTTGCCCAATAGTATAGGCT+GGG | - | chr4.3:25483814-25483833 | None:intergenic | 40.0% | |
| ! | TGAATCATGGTAGCTGATTC+AGG | - | chr4.3:25483470-25483489 | None:intergenic | 40.0% |
| ! | TGCGATTGATGGTTAGTTCA+TGG | + | chr4.3:25484176-25484195 | MS.gene47551:intron | 40.0% |
| ! | TTGGTGACAGATACTGTTCT+TGG | - | chr4.3:25483293-25483312 | None:intergenic | 40.0% |
| !! | AATACTGATTCCACTTCTGC+AGG | - | chr4.3:25485472-25485491 | None:intergenic | 40.0% |
| !! | CGGATTGAAAGTGTTCAATG+AGG | + | chr4.3:25485331-25485350 | MS.gene47551:intron | 40.0% |
| !!! | GACTGCCGGAATTTTGATTA+GGG | + | chr4.3:25485714-25485733 | MS.gene47551:CDS | 40.0% |
| !!! | TGACTGCCGGAATTTTGATT+AGG | + | chr4.3:25485713-25485732 | MS.gene47551:CDS | 40.0% |
| AATTGTGTACAAACGGCCAC+CGG | + | chr4.3:25485744-25485763 | MS.gene47551:CDS | 45.0% | |
| ACATCTTCAGGAAAAGGTGG+TGG | - | chr4.3:25483392-25483411 | None:intergenic | 45.0% | |
| ACTTCTGCAGGATTCAGAAC+AGG | - | chr4.3:25485460-25485479 | None:intergenic | 45.0% | |
| AGATAACGTGTGTCTGACAC+AGG | + | chr4.3:25483730-25483749 | MS.gene47551:intron | 45.0% | |
| AGATACATGAAGTGCAGCTG+AGG | + | chr4.3:25484465-25484484 | MS.gene47551:intron | 45.0% | |
| AGGGAATGAATTGAGGGTTG+TGG | + | chr4.3:25483894-25483913 | MS.gene47551:intron | 45.0% | |
| AGTACGTACAACCATGAACG+TGG | - | chr4.3:25484730-25484749 | None:intergenic | 45.0% | |
| AGTTCCACAGGTTGTAAGCA+AGG | + | chr4.3:25485795-25485814 | MS.gene47551:CDS | 45.0% | |
| ATCTCAGAGACTTCTTGCGT+TGG | + | chr4.3:25483340-25483359 | MS.gene47551:CDS | 45.0% | |
| ATGGATTCTTCTTCCAGTGG+TGG | + | chr4.3:25483317-25483336 | MS.gene47551:CDS | 45.0% | |
| CCCAGTTTAATGACCTGCAA+TGG | - | chr4.3:25484854-25484873 | None:intergenic | 45.0% | |
| CGATGACAGGAACTACTCTT+AGG | - | chr4.3:25485408-25485427 | None:intergenic | 45.0% | |
| CTATCCTTGCTTACAACCTG+TGG | - | chr4.3:25485802-25485821 | None:intergenic | 45.0% | |
| CTGAGATGATTGGAGATGGA+GGG | + | chr4.3:25484326-25484345 | MS.gene47551:intron | 45.0% | |
| CTTTCAATCCGAAGCAGATG+AGG | - | chr4.3:25485322-25485341 | None:intergenic | 45.0% | |
| GAATGAATTGAGGGTTGTGG+TGG | + | chr4.3:25483897-25483916 | MS.gene47551:intron | 45.0% | |
| GAGAGGCAGAAGAGGAAATT+GGG | + | chr4.3:25484006-25484025 | MS.gene47551:CDS | 45.0% | |
| GATAACGTGTGTCTGACACA+GGG | + | chr4.3:25483731-25483750 | MS.gene47551:intron | 45.0% | |
| GGATTCTGCTCTATGAAAGC+CGG | - | chr4.3:25485766-25485785 | None:intergenic | 45.0% | |
| GTCATGGATTCTTCTTCCAG+TGG | + | chr4.3:25483314-25483333 | MS.gene47551:CDS | 45.0% | |
| GTGTCCCAGCCTATACTATT+GGG | + | chr4.3:25483807-25483826 | MS.gene47551:intron | 45.0% | |
| TCAGCTGCACTTCATGTATC+TGG | - | chr4.3:25484466-25484485 | None:intergenic | 45.0% | |
| TCATGAAGTATGCCGATGAC+AGG | - | chr4.3:25485421-25485440 | None:intergenic | 45.0% | |
| TGACAGGAACTACTCTTAGG+AGG | - | chr4.3:25485405-25485424 | None:intergenic | 45.0% | |
| TGTGTCCCAGCCTATACTAT+TGG | + | chr4.3:25483806-25483825 | MS.gene47551:intron | 45.0% | |
| TTCTTCACTGTCCACGTTCA+TGG | + | chr4.3:25484716-25484735 | MS.gene47551:intron | 45.0% | |
| ! | CTATTGGGCAAATGGTTTGG+GGG | + | chr4.3:25483822-25483841 | MS.gene47551:intron | 45.0% |
| ! | CTGAAGCGATTGCTTTAAGC+AGG | + | chr4.3:25485585-25485604 | MS.gene47551:intron | 45.0% |
| ! | GAGTCTGAGATGATTGGAGA+TGG | + | chr4.3:25484322-25484341 | MS.gene47551:intron | 45.0% |
| ! | TCTGAGATGATTGGAGATGG+AGG | + | chr4.3:25484325-25484344 | MS.gene47551:intron | 45.0% |
| ! | TGCTCTGAGTCTGAGATGAT+TGG | + | chr4.3:25484316-25484335 | MS.gene47551:intron | 45.0% |
| ! | TGTTCTGAATCCTGCAGAAG+TGG | + | chr4.3:25485459-25485478 | MS.gene47551:CDS | 45.0% |
| !! | AAGGTGATGATGGGGATCTA+AGG | + | chr4.3:25483543-25483562 | MS.gene47551:CDS | 45.0% |
| !! | AGGTGATGATGGGGATCTAA+GGG | + | chr4.3:25483544-25483563 | MS.gene47551:CDS | 45.0% |
| !! | GAACAGAGCATTGAAGAGAG+TGG | + | chr4.3:25483416-25483435 | MS.gene47551:CDS | 45.0% |
| ACCTGAGTGAGTAGAGAGCT+TGG | - | chr4.3:25483591-25483610 | None:intergenic | 50.0% | |
| AGGAGATTCCATGCTGTGTG+AGG | + | chr4.3:25484278-25484297 | MS.gene47551:intron | 50.0% | |
| ATCCCATTCCCATTCGCCAA+TGG | - | chr4.3:25484584-25484603 | None:intergenic | 50.0% | |
| CAGGAAGAGAGAGAGTGGAT+GGG | + | chr4.3:25485622-25485641 | MS.gene47551:CDS | 50.0% | |
| CGAGAGGCAGAAGAGGAAAT+TGG | + | chr4.3:25484005-25484024 | MS.gene47551:CDS | 50.0% | |
| CTCATATGGGGATTGACTGC+CGG | + | chr4.3:25485700-25485719 | MS.gene47551:CDS | 50.0% | |
| GCAGGATGAAAATCGGAGTC+AGG | + | chr4.3:25485603-25485622 | MS.gene47551:intron | 50.0% | |
| GGCAGAAGAGGAAATTGGGT+TGG | + | chr4.3:25484010-25484029 | MS.gene47551:CDS | 50.0% | |
| TCAGGAAGAGAGAGAGTGGA+TGG | + | chr4.3:25485621-25485640 | MS.gene47551:CDS | 50.0% | |
| TCCAAGCTCTCTACTCACTC+AGG | + | chr4.3:25483587-25483606 | MS.gene47551:CDS | 50.0% | |
| TGCAAAACGAGAGGCAGAAG+AGG | + | chr4.3:25483998-25484017 | MS.gene47551:CDS | 50.0% | |
| TTCTGCTCTATGAAAGCCGG+TGG | - | chr4.3:25485763-25485782 | None:intergenic | 50.0% | |
| ! | GTAGGTGAAGTGTCATTGCC+TGG | + | chr4.3:25483936-25483955 | MS.gene47551:intron | 50.0% |
| ! | GTGAAGTGTCATTGCCTGGT+GGG | + | chr4.3:25483940-25483959 | MS.gene47551:CDS | 50.0% |
| ! | TCTTCAGGAAAAGGTGGTGG+TGG | - | chr4.3:25483389-25483408 | None:intergenic | 50.0% |
| ! | TTCTGCCTCTCGTTTTGCAG+TGG | - | chr4.3:25483997-25484016 | None:intergenic | 50.0% |
| !! | AAGTCTCTGAGATCCACCAC+TGG | - | chr4.3:25483333-25483352 | None:intergenic | 50.0% |
| !! | CAGAGCATTGAAGAGAGTGG+TGG | + | chr4.3:25483419-25483438 | MS.gene47551:CDS | 50.0% |
| ACCATTTCAGAGTCGGTCCG+CGG | + | chr4.3:25485210-25485229 | MS.gene47551:intron | 55.0% | |
| ATGCAGTGGCCATTGGCGAA+TGG | + | chr4.3:25484572-25484591 | MS.gene47551:intron | 55.0% | |
| GAAAGCGGAGGAAGGGGATA+AGG | + | chr4.3:25483962-25483981 | MS.gene47551:CDS | 55.0% | |
| GGAGTCAGGAAGAGAGAGAG+TGG | + | chr4.3:25485617-25485636 | MS.gene47551:CDS | 55.0% | |
| GGCCATTGGCGAATGGGAAT+GGG | + | chr4.3:25484579-25484598 | MS.gene47551:intron | 55.0% | |
| GTCATTGCCTGGTGGGAAAG+CGG | + | chr4.3:25483947-25483966 | MS.gene47551:CDS | 55.0% | |
| TGCAGTGGCCATTGGCGAAT+GGG | + | chr4.3:25484573-25484592 | MS.gene47551:intron | 55.0% | |
| TGGCCATTGGCGAATGGGAA+TGG | + | chr4.3:25484578-25484597 | MS.gene47551:intron | 55.0% | |
| ! | GGTGAAGTGTCATTGCCTGG+TGG | + | chr4.3:25483939-25483958 | MS.gene47551:intron | 55.0% |
| !! | ACAGTTGGTGGCACGAGCAA+TGG | - | chr4.3:25484818-25484837 | None:intergenic | 55.0% |
| !! | GAAGTGCAGCTGAGGTACTG+AGG | + | chr4.3:25484473-25484492 | MS.gene47551:intron | 55.0% |
| ATTGCCTGGTGGGAAAGCGG+AGG | + | chr4.3:25483950-25483969 | MS.gene47551:CDS | 60.0% | |
| CTGGTGGGAAAGCGGAGGAA+GGG | + | chr4.3:25483955-25483974 | MS.gene47551:CDS | 60.0% | |
| GGAAGGGGATAAGGACGACG+CGG | + | chr4.3:25483971-25483990 | MS.gene47551:CDS | 60.0% | |
| TGGTGGGAAAGCGGAGGAAG+GGG | + | chr4.3:25483956-25483975 | MS.gene47551:CDS | 60.0% | |
| ! | ACCGCGGACCGACTCTGAAA+TGG | - | chr4.3:25485214-25485233 | None:intergenic | 60.0% |
| CCTGGTGGGAAAGCGGAGGA+AGG | + | chr4.3:25483954-25483973 | MS.gene47551:CDS | 65.0% | |
| CCTTCCTCCGCTTTCCCACC+AGG | - | chr4.3:25483957-25483976 | None:intergenic | 65.0% | |
| CGCGGCCACTGCAAAACGAG+AGG | + | chr4.3:25483989-25484008 | MS.gene47551:CDS | 65.0% | |
| TCAGAGTCGGTCCGCGGTCA+CGG | + | chr4.3:25485216-25485235 | MS.gene47551:intron | 65.0% | |
| CAGAGTCGGTCCGCGGTCAC+GGG | + | chr4.3:25485217-25485236 | MS.gene47551:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 25483251 | 25485834 | 25483251 | ID=MS.gene47551 |
| chr4.3 | mRNA | 25483251 | 25485834 | 25483251 | ID=MS.gene47551.t1;Parent=MS.gene47551 |
| chr4.3 | exon | 25483251 | 25483608 | 25483251 | ID=MS.gene47551.t1.exon1;Parent=MS.gene47551.t1 |
| chr4.3 | CDS | 25483251 | 25483608 | 25483251 | ID=cds.MS.gene47551.t1;Parent=MS.gene47551.t1 |
| chr4.3 | exon | 25483940 | 25484082 | 25483940 | ID=MS.gene47551.t1.exon2;Parent=MS.gene47551.t1 |
| chr4.3 | CDS | 25483940 | 25484082 | 25483940 | ID=cds.MS.gene47551.t1;Parent=MS.gene47551.t1 |
| chr4.3 | exon | 25485400 | 25485519 | 25485400 | ID=MS.gene47551.t1.exon3;Parent=MS.gene47551.t1 |
| chr4.3 | CDS | 25485400 | 25485519 | 25485400 | ID=cds.MS.gene47551.t1;Parent=MS.gene47551.t1 |
| chr4.3 | exon | 25485607 | 25485834 | 25485607 | ID=MS.gene47551.t1.exon4;Parent=MS.gene47551.t1 |
| chr4.3 | CDS | 25485607 | 25485834 | 25485607 | ID=cds.MS.gene47551.t1;Parent=MS.gene47551.t1 |
| Gene Sequence |
| Protein sequence |
