Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47676.t1 | XP_024639199.1 | 97.1 | 242 | 6 | 1 | 1 | 242 | 1 | 241 | 5.90E-128 | 466.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47676.t1 | Q9SS37 | 56.7 | 231 | 96 | 3 | 10 | 240 | 14 | 240 | 1.4e-72 | 274.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47676.t1 | G7KD07 | 97.1 | 242 | 6 | 1 | 1 | 242 | 49 | 289 | 4.3e-128 | 466.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023287 | MS.gene47676 | PPI |
| MS.gene47676 | MS.gene34943 | PPI |
| MS.gene47676 | MS.gene35007 | PPI |
| MS.gene028158 | MS.gene47676 | PPI |
| MS.gene028160 | MS.gene47676 | PPI |
| MS.gene08330 | MS.gene47676 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47676.t1 | MTR_5g090340 | 97.107 | 242 | 6 | 1 | 1 | 242 | 46 | 286 | 3.62e-174 | 481 |
| MS.gene47676.t1 | MTR_5g090340 | 97.107 | 242 | 6 | 1 | 1 | 242 | 49 | 289 | 3.74e-174 | 481 |
| MS.gene47676.t1 | MTR_3g449880 | 65.217 | 230 | 78 | 1 | 1 | 230 | 1 | 228 | 1.58e-111 | 320 |
| MS.gene47676.t1 | MTR_3g449880 | 68.023 | 172 | 53 | 1 | 59 | 230 | 37 | 206 | 1.19e-84 | 251 |
| MS.gene47676.t1 | MTR_8g099060 | 47.418 | 213 | 107 | 2 | 30 | 239 | 42 | 252 | 1.04e-68 | 212 |
| MS.gene47676.t1 | MTR_8g028450 | 44.286 | 210 | 111 | 2 | 34 | 239 | 53 | 260 | 3.42e-62 | 196 |
| MS.gene47676.t1 | MTR_1g099500 | 40.306 | 196 | 115 | 2 | 42 | 237 | 50 | 243 | 3.68e-54 | 175 |
| MS.gene47676.t1 | MTR_1g109630 | 36.181 | 199 | 115 | 4 | 43 | 239 | 10 | 198 | 3.12e-40 | 137 |
| MS.gene47676.t1 | MTR_3g062910 | 32.979 | 188 | 124 | 1 | 41 | 228 | 45 | 230 | 9.23e-34 | 122 |
| MS.gene47676.t1 | MTR_4g014700 | 33.163 | 196 | 129 | 1 | 41 | 236 | 5 | 198 | 1.67e-29 | 110 |
| MS.gene47676.t1 | MTR_5g090440 | 88.679 | 53 | 6 | 0 | 191 | 243 | 9 | 61 | 1.95e-27 | 100 |
| MS.gene47676.t1 | MTR_6g012460 | 31.111 | 180 | 122 | 1 | 60 | 239 | 14 | 191 | 6.59e-27 | 103 |
| MS.gene47676.t1 | MTR_5g018250 | 30.939 | 181 | 123 | 1 | 55 | 235 | 29 | 207 | 1.27e-23 | 95.1 |
| MS.gene47676.t1 | MTR_1g107445 | 33.511 | 188 | 123 | 1 | 50 | 237 | 9 | 194 | 1.48e-23 | 94.7 |
| MS.gene47676.t1 | MTR_5g018190 | 33.108 | 148 | 97 | 1 | 63 | 210 | 284 | 429 | 1.68e-18 | 84.3 |
| MS.gene47676.t1 | MTR_5g018080 | 33.566 | 143 | 93 | 1 | 59 | 201 | 15 | 155 | 1.23e-17 | 77.8 |
| MS.gene47676.t1 | MTR_6g012460 | 33.835 | 133 | 86 | 1 | 60 | 192 | 14 | 144 | 3.87e-17 | 77.8 |
| MS.gene47676.t1 | MTR_5g018110 | 33.333 | 144 | 94 | 1 | 62 | 205 | 344 | 485 | 3.76e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47676.t1 | AT3G10260 | 56.710 | 231 | 96 | 3 | 10 | 240 | 14 | 240 | 1.98e-97 | 285 |
| MS.gene47676.t1 | AT3G10260 | 56.710 | 231 | 96 | 3 | 10 | 240 | 14 | 240 | 1.98e-97 | 285 |
| MS.gene47676.t1 | AT3G10260 | 56.710 | 231 | 96 | 3 | 10 | 240 | 34 | 260 | 4.27e-97 | 285 |
| MS.gene47676.t1 | AT2G46170 | 45.098 | 204 | 110 | 1 | 34 | 237 | 43 | 244 | 6.17e-66 | 205 |
| MS.gene47676.t1 | AT3G61560 | 44.118 | 204 | 112 | 1 | 34 | 237 | 43 | 244 | 2.02e-64 | 201 |
| MS.gene47676.t1 | AT3G61560 | 44.118 | 204 | 112 | 1 | 34 | 237 | 43 | 244 | 2.02e-64 | 201 |
| MS.gene47676.t1 | AT1G64090 | 40.758 | 211 | 119 | 2 | 33 | 239 | 38 | 246 | 1.47e-58 | 186 |
| MS.gene47676.t1 | AT4G23630 | 39.899 | 198 | 117 | 1 | 42 | 239 | 72 | 267 | 5.69e-58 | 185 |
| MS.gene47676.t1 | AT4G23630 | 39.899 | 198 | 117 | 1 | 42 | 239 | 72 | 267 | 5.69e-58 | 185 |
| MS.gene47676.t1 | AT4G11220 | 37.374 | 198 | 122 | 1 | 42 | 239 | 68 | 263 | 2.80e-57 | 183 |
| MS.gene47676.t1 | AT5G41600 | 41.089 | 202 | 113 | 3 | 42 | 239 | 51 | 250 | 8.79e-56 | 179 |
| MS.gene47676.t1 | AT1G64090 | 38.222 | 225 | 117 | 3 | 35 | 239 | 40 | 262 | 1.32e-54 | 177 |
| MS.gene47676.t1 | AT3G18260 | 38.191 | 199 | 121 | 1 | 41 | 239 | 21 | 217 | 6.78e-50 | 163 |
| MS.gene47676.t1 | AT4G01230 | 38.916 | 203 | 119 | 1 | 35 | 237 | 46 | 243 | 7.70e-50 | 164 |
| MS.gene47676.t1 | AT3G61560 | 45.570 | 158 | 84 | 1 | 34 | 191 | 43 | 198 | 1.22e-47 | 157 |
| MS.gene47676.t1 | AT4G01230 | 37.931 | 203 | 119 | 2 | 35 | 237 | 46 | 241 | 1.63e-46 | 155 |
| MS.gene47676.t1 | AT2G46170 | 41.912 | 136 | 77 | 1 | 34 | 169 | 43 | 176 | 1.14e-35 | 125 |
| MS.gene47676.t1 | AT3G10915 | 30.348 | 201 | 138 | 1 | 37 | 237 | 19 | 217 | 1.06e-34 | 124 |
| MS.gene47676.t1 | AT3G10915 | 29.808 | 208 | 144 | 1 | 29 | 236 | 36 | 241 | 1.60e-34 | 124 |
| MS.gene47676.t1 | AT3G10915 | 30.198 | 202 | 138 | 2 | 37 | 237 | 19 | 218 | 6.09e-33 | 119 |
| MS.gene47676.t1 | AT2G15280 | 33.158 | 190 | 125 | 1 | 47 | 236 | 2 | 189 | 1.20e-32 | 118 |
| MS.gene47676.t1 | AT1G68230 | 33.161 | 193 | 121 | 3 | 50 | 240 | 22 | 208 | 4.82e-28 | 106 |
| MS.gene47676.t1 | AT3G10915 | 27.232 | 224 | 138 | 3 | 37 | 237 | 19 | 240 | 1.54e-27 | 106 |
| MS.gene47676.t1 | AT3G10915 | 28.415 | 183 | 129 | 1 | 54 | 236 | 4 | 184 | 1.03e-26 | 102 |
| MS.gene47676.t1 | AT3G19460 | 31.073 | 177 | 120 | 1 | 51 | 227 | 14 | 188 | 1.06e-26 | 102 |
| MS.gene47676.t1 | AT3G19460 | 31.073 | 177 | 120 | 1 | 51 | 227 | 14 | 188 | 1.06e-26 | 102 |
| MS.gene47676.t1 | AT3G19460 | 31.073 | 177 | 120 | 1 | 51 | 227 | 14 | 188 | 1.06e-26 | 102 |
| MS.gene47676.t1 | AT3G10915 | 28.652 | 178 | 125 | 1 | 59 | 236 | 8 | 183 | 1.72e-26 | 102 |
| MS.gene47676.t1 | AT3G54120 | 28.708 | 209 | 142 | 3 | 36 | 243 | 1 | 203 | 6.84e-22 | 90.1 |
| MS.gene47676.t1 | AT3G19460 | 27.103 | 214 | 114 | 5 | 51 | 227 | 14 | 222 | 3.54e-20 | 86.3 |
| MS.gene47676.t1 | AT3G19460 | 27.103 | 214 | 114 | 5 | 51 | 227 | 14 | 222 | 3.54e-20 | 86.3 |
| MS.gene47676.t1 | AT1G68230 | 33.793 | 145 | 88 | 3 | 50 | 192 | 22 | 160 | 4.67e-17 | 76.3 |
| MS.gene47676.t1 | AT3G10915 | 31.200 | 125 | 84 | 1 | 42 | 166 | 24 | 146 | 7.53e-17 | 75.9 |
| MS.gene47676.t1 | AT2G23640 | 24.713 | 174 | 129 | 1 | 61 | 234 | 18 | 189 | 7.03e-15 | 71.2 |
| MS.gene47676.t1 | AT2G15280 | 23.684 | 190 | 104 | 2 | 47 | 236 | 2 | 150 | 1.22e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGGTTGTAGTATGCTTA+TGG | 0.271495 | 5.3:-72825801 | MS.gene47676:intron |
| TCATGTCTGTACAGTTTCTT+TGG | 0.274156 | 5.3:-72826495 | MS.gene47676:CDS |
| CTGAGGTTAACCGTGGTTTA+AGG | 0.278401 | 5.3:-72826259 | MS.gene47676:CDS |
| TATCCAAGCTTCTTTCCTTT+GGG | 0.285834 | 5.3:+72825162 | None:intergenic |
| TATAATTAAGCCATTCAAAA+AGG | 0.291332 | 5.3:+72826554 | None:intergenic |
| CAGTATAGGAAGGTGGATTC+TGG | 0.314712 | 5.3:-72825201 | MS.gene47676:CDS |
| CTATCCAAGCTTCTTTCCTT+TGG | 0.317711 | 5.3:+72825161 | None:intergenic |
| TATTAACAAAGAAATCTTTC+GGG | 0.323201 | 5.3:+72826300 | None:intergenic |
| CAGAATCCACCTTCCTATAC+TGG | 0.327594 | 5.3:+72825202 | None:intergenic |
| GTCCAAACAGTTTATTGAAC+TGG | 0.330990 | 5.3:+72826786 | None:intergenic |
| TAACCGCTGCAACAACTATA+TGG | 0.340621 | 5.3:-72826579 | MS.gene47676:CDS |
| ATATTAACAAAGAAATCTTT+CGG | 0.374090 | 5.3:+72826299 | None:intergenic |
| CTGGTGCTGTGATTGGGAAC+TGG | 0.386885 | 5.3:-72825777 | MS.gene47676:CDS |
| ATGCTTCCGGCGTGTTTAGC+AGG | 0.400253 | 5.3:-72826468 | MS.gene47676:intron |
| TCCCAGTTCAATAAACTGTT+TGG | 0.402640 | 5.3:-72826788 | MS.gene47676:CDS |
| TTATGGGCTGGTGCTGTGAT+TGG | 0.407728 | 5.3:-72825784 | MS.gene47676:CDS |
| TTTCTTTGGACAAATGCTTC+CGG | 0.425537 | 5.3:-72826481 | MS.gene47676:CDS |
| GCCATCAAAAGCTCCTCGTT+TGG | 0.430625 | 5.3:-72826327 | MS.gene47676:CDS |
| TCATACCTTTCGTAGAGAAC+CGG | 0.437296 | 5.3:+72825273 | None:intergenic |
| GCAGGTTGTAGTATGCTTAT+GGG | 0.447620 | 5.3:-72825800 | MS.gene47676:intron |
| TATGGGCTGGTGCTGTGATT+GGG | 0.451379 | 5.3:-72825783 | MS.gene47676:CDS |
| ATCCAAGCTTCTTTCCTTTG+GGG | 0.455010 | 5.3:+72825163 | None:intergenic |
| GAGCTAGGCATAGAAGTGAT+AGG | 0.455942 | 5.3:+72826527 | None:intergenic |
| CTTCAAAATGTTTCATGTGG+AGG | 0.472512 | 5.3:-72826233 | MS.gene47676:CDS |
| AAAGCTTCTGAACACCTTCG+TGG | 0.484982 | 5.3:-72826876 | MS.gene47676:CDS |
| AGTTGTTGCAGCGGTTAAAA+CGG | 0.489432 | 5.3:+72826585 | None:intergenic |
| ATCCCCAAAGGAAAGAAGCT+TGG | 0.496516 | 5.3:-72825165 | MS.gene47676:CDS |
| ATCAGATGCAAAACCAGTAT+AGG | 0.499744 | 5.3:-72825215 | MS.gene47676:CDS |
| CTTGGCGAGAGGCAAAAGTC+TGG | 0.502330 | 5.3:-72826848 | MS.gene47676:CDS |
| TTTGAAGAAACCTTAAACCA+CGG | 0.502721 | 5.3:+72826249 | None:intergenic |
| AGTTTGCCTTCACTTCTACA+TGG | 0.505250 | 5.3:+72826819 | None:intergenic |
| TGTTGCTGCACATACACTCC+CGG | 0.528499 | 5.3:-72825292 | MS.gene47676:CDS |
| GTTAATATTGCAACTGCTGT+TGG | 0.530596 | 5.3:-72826284 | MS.gene47676:CDS |
| TCCAAACAGTTTATTGAACT+GGG | 0.530900 | 5.3:+72826787 | None:intergenic |
| GATTGATAACTTCGTGTACA+AGG | 0.536766 | 5.3:-72825244 | MS.gene47676:CDS |
| AACACCTTCGTGGAAACACT+TGG | 0.537056 | 5.3:-72826866 | MS.gene47676:CDS |
| TTTCTTCAAAATGTTTCATG+TGG | 0.542392 | 5.3:-72826236 | MS.gene47676:CDS |
| CCACCTAAAATATGGTGCAC+AGG | 0.562386 | 5.3:+72826755 | None:intergenic |
| GTTGTAGTATGCTTATGGGC+TGG | 0.564353 | 5.3:-72825796 | MS.gene47676:CDS |
| CATACCTTTCGTAGAGAACC+GGG | 0.565792 | 5.3:+72825274 | None:intergenic |
| TAGCTGCTGATGTCATGTTG+TGG | 0.573484 | 5.3:-72826630 | MS.gene47676:CDS |
| TTCATTCCATGTAGAAGTGA+AGG | 0.576828 | 5.3:-72826825 | MS.gene47676:CDS |
| CACTCCCGGTTCTCTACGAA+AGG | 0.578629 | 5.3:-72825278 | MS.gene47676:CDS |
| CTGCTGATGTCATGTTGTGG+AGG | 0.578920 | 5.3:-72826627 | MS.gene47676:CDS |
| TTTCTTTCCGTAGTGACAGG+AGG | 0.604290 | 5.3:-72826349 | MS.gene47676:intron |
| TGCTGATGTCATGTTGTGGA+GGG | 0.606274 | 5.3:-72826626 | MS.gene47676:CDS |
| ACATGACAAGAACAAGAGCT+AGG | 0.612406 | 5.3:+72826512 | None:intergenic |
| CTCGCCAAGTGTTTCCACGA+AGG | 0.615062 | 5.3:+72826862 | None:intergenic |
| TGCAACTGCTGTTGGTACTG+AGG | 0.617255 | 5.3:-72826276 | MS.gene47676:CDS |
| GATGCAAAACCAGTATAGGA+AGG | 0.625408 | 5.3:-72825211 | MS.gene47676:CDS |
| GCAAAACCAGTATAGGAAGG+TGG | 0.628367 | 5.3:-72825208 | MS.gene47676:CDS |
| GAGCCATATAGTTGTTGCAG+CGG | 0.636566 | 5.3:+72826576 | None:intergenic |
| TCGTGGAAACACTTGGCGAG+AGG | 0.645330 | 5.3:-72826859 | MS.gene47676:CDS |
| TTGCTTAGCAAAATCCCCAA+AGG | 0.645417 | 5.3:-72825177 | MS.gene47676:CDS |
| GAATAACCTGCTAAACACGC+CGG | 0.683282 | 5.3:+72826462 | None:intergenic |
| GTTGGTACTGAGGTTAACCG+TGG | 0.696305 | 5.3:-72826266 | MS.gene47676:CDS |
| AAACAGTTTATTGAACTGGG+AGG | 0.721336 | 5.3:+72826790 | None:intergenic |
| TCTTTCGGGAGAACCAAACG+AGG | 0.723179 | 5.3:+72826314 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTTAGATAAAAATAAAAT+AGG | + | chr5.3:72825656-72825675 | None:intergenic | 10.0% |
| !!! | TATTTAGAGATAATATTTTT+AGG | + | chr5.3:72826444-72826463 | None:intergenic | 10.0% |
| !!! | TTTATTTTTATCTAAATGTA+TGG | - | chr5.3:72825658-72825677 | MS.gene47676:intron | 10.0% |
| !! | ACACATGAATTAAAAAAAAT+TGG | + | chr5.3:72826141-72826160 | None:intergenic | 15.0% |
| !! | ATATTAACAAAGAAATCTTT+CGG | + | chr5.3:72825764-72825783 | None:intergenic | 15.0% |
| !!! | TATGATTTTATATTTAGAGA+CGG | - | chr5.3:72826170-72826189 | MS.gene47676:intron | 15.0% |
| !!! | TTTTTTAATTCATGTGTTTT+AGG | - | chr5.3:72826144-72826163 | MS.gene47676:intron | 15.0% |
| !! | AATAATTAGAGAAAACATCA+TGG | + | chr5.3:72826378-72826397 | None:intergenic | 20.0% |
| !! | AATGTAGTTGAAAATTTGAA+AGG | + | chr5.3:72826006-72826025 | None:intergenic | 20.0% |
| !! | ATGTAGTTGAAAATTTGAAA+GGG | + | chr5.3:72826005-72826024 | None:intergenic | 20.0% |
| !! | CAACATAATTAGAGATATAA+TGG | + | chr5.3:72826042-72826061 | None:intergenic | 20.0% |
| !! | GATTATAAATGACAAAACAA+AGG | + | chr5.3:72825900-72825919 | None:intergenic | 20.0% |
| !! | TATAATTAAGCCATTCAAAA+AGG | + | chr5.3:72825509-72825528 | None:intergenic | 20.0% |
| !! | TATTAACAAAGAAATCTTTC+GGG | + | chr5.3:72825763-72825782 | None:intergenic | 20.0% |
| !!! | GTATGTTTTAAGCATAAATA+TGG | + | chr5.3:72825922-72825941 | None:intergenic | 20.0% |
| !!! | GTTAAAACTTTGTTATGTTA+CGG | - | chr5.3:72826686-72826705 | MS.gene47676:intron | 20.0% |
| !!! | GTTTTCTCTAATTATTAAGT+TGG | - | chr5.3:72826382-72826401 | MS.gene47676:intron | 20.0% |
| !!! | TTTCATTGTCCTTTTTTAAA+AGG | - | chr5.3:72825978-72825997 | MS.gene47676:intron | 20.0% |
| ! | ACACATTGTATCAACAAAAA+AGG | + | chr5.3:72826352-72826371 | None:intergenic | 25.0% |
| ! | CTGTTGAAATAGTATTTCAT+CGG | - | chr5.3:72826479-72826498 | MS.gene47676:CDS | 25.0% |
| ! | TCCTGTAAAATCTATCATAT+TGG | - | chr5.3:72825363-72825382 | MS.gene47676:intron | 25.0% |
| ! | TGTAGTTGAAAATTTGAAAG+GGG | + | chr5.3:72826004-72826023 | None:intergenic | 25.0% |
| ! | TTGAAAAACAGAAACATTGA+CGG | - | chr5.3:72826211-72826230 | MS.gene47676:CDS | 25.0% |
| ! | TTTCTTCAAAATGTTTCATG+TGG | - | chr5.3:72825824-72825843 | MS.gene47676:intron | 25.0% |
| !! | TTTTTGTTGATACAATGTGT+TGG | - | chr5.3:72826352-72826371 | MS.gene47676:intron | 25.0% |
| !!! | CTTTGTTTTGTTATGTCTTA+AGG | - | chr5.3:72826742-72826761 | MS.gene47676:intron | 25.0% |
| !!! | TTTTTTACTGTCGTGTATAT+CGG | - | chr5.3:72826312-72826331 | MS.gene47676:CDS | 25.0% |
| CAAAAGAAGAAATTCAAGGA+TGG | + | chr5.3:72825626-72825645 | None:intergenic | 30.0% | |
| CAGACAAAAGAAGAAATTCA+AGG | + | chr5.3:72825630-72825649 | None:intergenic | 30.0% | |
| CATTGTATCAACAAAAAAGG+AGG | + | chr5.3:72826349-72826368 | None:intergenic | 30.0% | |
| GACAATGAAAAATCTCAAGA+GGG | + | chr5.3:72825968-72825987 | None:intergenic | 30.0% | |
| TCAAGAATTCTCTCTTTGTT+TGG | + | chr5.3:72826525-72826544 | None:intergenic | 30.0% | |
| TCCAAACAGTTTATTGAACT+GGG | + | chr5.3:72825276-72825295 | None:intergenic | 30.0% | |
| TTTGAAGAAACCTTAAACCA+CGG | + | chr5.3:72825814-72825833 | None:intergenic | 30.0% | |
| ! | ATTTTCCACCACCTAAAATA+TGG | + | chr5.3:72825316-72825335 | None:intergenic | 30.0% |
| ! | GATTTTATATTTAGAGACGG+AGG | - | chr5.3:72826173-72826192 | MS.gene47676:intron | 30.0% |
| ! | GCCAATATGATAGATTTTAC+AGG | + | chr5.3:72825367-72825386 | None:intergenic | 30.0% |
| AAACAGTTTATTGAACTGGG+AGG | + | chr5.3:72825273-72825292 | None:intergenic | 35.0% | |
| AACAGCAAACTCGGTTAATT+GGG | + | chr5.3:72826591-72826610 | None:intergenic | 35.0% | |
| ATCAGATGCAAAACCAGTAT+AGG | - | chr5.3:72826845-72826864 | MS.gene47676:CDS | 35.0% | |
| ATCATGCTTAAAACATCTGC+AGG | - | chr5.3:72826242-72826261 | MS.gene47676:CDS | 35.0% | |
| CTTCAAAATGTTTCATGTGG+AGG | - | chr5.3:72825827-72825846 | MS.gene47676:intron | 35.0% | |
| GGACAATGAAAAATCTCAAG+AGG | + | chr5.3:72825969-72825988 | None:intergenic | 35.0% | |
| GTCCAAACAGTTTATTGAAC+TGG | + | chr5.3:72825277-72825296 | None:intergenic | 35.0% | |
| GTTAATATTGCAACTGCTGT+TGG | - | chr5.3:72825776-72825795 | MS.gene47676:CDS | 35.0% | |
| TAACAGCAAACTCGGTTAAT+TGG | + | chr5.3:72826592-72826611 | None:intergenic | 35.0% | |
| TATCCAAGCTTCTTTCCTTT+GGG | + | chr5.3:72826901-72826920 | None:intergenic | 35.0% | |
| TCATGTCTGTACAGTTTCTT+TGG | - | chr5.3:72825565-72825584 | MS.gene47676:intron | 35.0% | |
| TCCCAGTTCAATAAACTGTT+TGG | - | chr5.3:72825272-72825291 | MS.gene47676:CDS | 35.0% | |
| TTACCACGAAACACTTAACA+AGG | + | chr5.3:72826654-72826673 | None:intergenic | 35.0% | |
| TTCATTCCATGTAGAAGTGA+AGG | - | chr5.3:72825235-72825254 | MS.gene47676:CDS | 35.0% | |
| TTTATATTTAGAGACGGAGG+TGG | - | chr5.3:72826176-72826195 | MS.gene47676:intron | 35.0% | |
| TTTCTTTGGACAAATGCTTC+CGG | - | chr5.3:72825579-72825598 | MS.gene47676:intron | 35.0% | |
| ! | AAACCTGTGCACCATATTTT+AGG | - | chr5.3:72825302-72825321 | MS.gene47676:intron | 35.0% |
| ! | CTATATGGCTCCTTTTTGAA+TGG | - | chr5.3:72825496-72825515 | MS.gene47676:intron | 35.0% |
| ! | GATTGATAACTTCGTGTACA+AGG | - | chr5.3:72826816-72826835 | MS.gene47676:CDS | 35.0% |
| !! | TGAAAGGGGCCTTTTAAAAA+AGG | + | chr5.3:72825990-72826009 | None:intergenic | 35.0% |
| ACATGACAAGAACAAGAGCT+AGG | + | chr5.3:72825551-72825570 | None:intergenic | 40.0% | |
| AGTTGTTGCAGCGGTTAAAA+CGG | + | chr5.3:72825478-72825497 | None:intergenic | 40.0% | |
| AGTTTGCCTTCACTTCTACA+TGG | + | chr5.3:72825244-72825263 | None:intergenic | 40.0% | |
| ATCCAAGCTTCTTTCCTTTG+GGG | + | chr5.3:72826900-72826919 | None:intergenic | 40.0% | |
| CTATCCAAGCTTCTTTCCTT+TGG | + | chr5.3:72826902-72826921 | None:intergenic | 40.0% | |
| CTCAAGAGGGTCCTATATTT+GGG | + | chr5.3:72825955-72825974 | None:intergenic | 40.0% | |
| GATGCAAAACCAGTATAGGA+AGG | - | chr5.3:72826849-72826868 | MS.gene47676:CDS | 40.0% | |
| GCAGGTTGTAGTATGCTTAT+GGG | - | chr5.3:72826260-72826279 | MS.gene47676:CDS | 40.0% | |
| TAACCGCTGCAACAACTATA+TGG | - | chr5.3:72825481-72825500 | MS.gene47676:intron | 40.0% | |
| TCAAGAGGGTCCTATATTTG+GGG | + | chr5.3:72825954-72825973 | None:intergenic | 40.0% | |
| TCACCTTGTTAAGTGTTTCG+TGG | - | chr5.3:72826648-72826667 | MS.gene47676:intron | 40.0% | |
| TCATACCTTTCGTAGAGAAC+CGG | + | chr5.3:72826790-72826809 | None:intergenic | 40.0% | |
| TCTCAAGAGGGTCCTATATT+TGG | + | chr5.3:72825956-72825975 | None:intergenic | 40.0% | |
| TGCAGGTTGTAGTATGCTTA+TGG | - | chr5.3:72826259-72826278 | MS.gene47676:CDS | 40.0% | |
| TTGCTTAGCAAAATCCCCAA+AGG | - | chr5.3:72826883-72826902 | MS.gene47676:CDS | 40.0% | |
| ! | TGTTCTGCTACTTGCAATGA+TGG | - | chr5.3:72826067-72826086 | MS.gene47676:intron | 40.0% |
| ! | TTGTTTCTTTCCGTAGTGAC+AGG | - | chr5.3:72825708-72825727 | MS.gene47676:intron | 40.0% |
| !! | AACCGAGTTTGCTGTTATCT+CGG | - | chr5.3:72826595-72826614 | MS.gene47676:CDS | 40.0% |
| AAAGCTTCTGAACACCTTCG+TGG | - | chr5.3:72825184-72825203 | MS.gene47676:CDS | 45.0% | |
| AACACCTTCGTGGAAACACT+TGG | - | chr5.3:72825194-72825213 | MS.gene47676:CDS | 45.0% | |
| ATCCCCAAAGGAAAGAAGCT+TGG | - | chr5.3:72826895-72826914 | MS.gene47676:CDS | 45.0% | |
| CAAGAGGGTCCTATATTTGG+GGG | + | chr5.3:72825953-72825972 | None:intergenic | 45.0% | |
| CACCGAGATAACAGCAAACT+CGG | + | chr5.3:72826600-72826619 | None:intergenic | 45.0% | |
| CAGAATCCACCTTCCTATAC+TGG | + | chr5.3:72826861-72826880 | None:intergenic | 45.0% | |
| CATACCTTTCGTAGAGAACC+GGG | + | chr5.3:72826789-72826808 | None:intergenic | 45.0% | |
| CCACCTAAAATATGGTGCAC+AGG | + | chr5.3:72825308-72825327 | None:intergenic | 45.0% | |
| CTGAGGTTAACCGTGGTTTA+AGG | - | chr5.3:72825801-72825820 | MS.gene47676:intron | 45.0% | |
| GAATAACCTGCTAAACACGC+CGG | + | chr5.3:72825601-72825620 | None:intergenic | 45.0% | |
| GAGCCATATAGTTGTTGCAG+CGG | + | chr5.3:72825487-72825506 | None:intergenic | 45.0% | |
| GAGCTAGGCATAGAAGTGAT+AGG | + | chr5.3:72825536-72825555 | None:intergenic | 45.0% | |
| GCAAAACCAGTATAGGAAGG+TGG | - | chr5.3:72826852-72826871 | MS.gene47676:CDS | 45.0% | |
| GTTGTAGTATGCTTATGGGC+TGG | - | chr5.3:72826264-72826283 | MS.gene47676:CDS | 45.0% | |
| TAGCTGCTGATGTCATGTTG+TGG | - | chr5.3:72825430-72825449 | MS.gene47676:intron | 45.0% | |
| TGCTGATGTCATGTTGTGGA+GGG | - | chr5.3:72825434-72825453 | MS.gene47676:intron | 45.0% | |
| TTTCTTTCCGTAGTGACAGG+AGG | - | chr5.3:72825711-72825730 | MS.gene47676:intron | 45.0% | |
| ! | ACCAAACGAGGAGCTTTTGA+TGG | + | chr5.3:72825737-72825756 | None:intergenic | 45.0% |
| ! | CAGTATAGGAAGGTGGATTC+TGG | - | chr5.3:72826859-72826878 | MS.gene47676:CDS | 45.0% |
| ! | GGTGTTCAGAAGCTTTTCAG+CGG | + | chr5.3:72825180-72825199 | None:intergenic | 45.0% |
| !! | CCTGTGCACCATATTTTAGG+TGG | - | chr5.3:72825305-72825324 | MS.gene47676:intron | 45.0% |
| !! | GTGCACCATATTTTAGGTGG+TGG | - | chr5.3:72825308-72825327 | MS.gene47676:intron | 45.0% |
| !! | TTTGCTGTTATCTCGGTGTG+TGG | - | chr5.3:72826602-72826621 | MS.gene47676:CDS | 45.0% |
| CTGCTGATGTCATGTTGTGG+AGG | - | chr5.3:72825433-72825452 | MS.gene47676:intron | 50.0% | |
| GCCATCAAAAGCTCCTCGTT+TGG | - | chr5.3:72825733-72825752 | MS.gene47676:intron | 50.0% | |
| TCTTTCGGGAGAACCAAACG+AGG | + | chr5.3:72825749-72825768 | None:intergenic | 50.0% | |
| TGCAACTGCTGTTGGTACTG+AGG | - | chr5.3:72825784-72825803 | MS.gene47676:CDS | 50.0% | |
| TGTTGCTGCACATACACTCC+CGG | - | chr5.3:72826768-72826787 | MS.gene47676:CDS | 50.0% | |
| ! | GTTGGTACTGAGGTTAACCG+TGG | - | chr5.3:72825794-72825813 | MS.gene47676:CDS | 50.0% |
| ! | TTGATGGCCTCCTGTCACTA+CGG | + | chr5.3:72825721-72825740 | None:intergenic | 50.0% |
| !! | TATGGGCTGGTGCTGTGATT+GGG | - | chr5.3:72826277-72826296 | MS.gene47676:CDS | 50.0% |
| !! | TTATGGGCTGGTGCTGTGAT+TGG | - | chr5.3:72826276-72826295 | MS.gene47676:CDS | 50.0% |
| ATGCTTCCGGCGTGTTTAGC+AGG | - | chr5.3:72825592-72825611 | MS.gene47676:intron | 55.0% | |
| CACTCCCGGTTCTCTACGAA+AGG | - | chr5.3:72826782-72826801 | MS.gene47676:CDS | 55.0% | |
| CTACCTCCGCCCCCAAATAT+AGG | - | chr5.3:72825941-72825960 | MS.gene47676:intron | 55.0% | |
| CTCGCCAAGTGTTTCCACGA+AGG | + | chr5.3:72825201-72825220 | None:intergenic | 55.0% | |
| CTTGGCGAGAGGCAAAAGTC+TGG | - | chr5.3:72825212-72825231 | MS.gene47676:CDS | 55.0% | |
| GAGGGTCCTATATTTGGGGG+CGG | + | chr5.3:72825950-72825969 | None:intergenic | 55.0% | |
| TCGTGGAAACACTTGGCGAG+AGG | - | chr5.3:72825201-72825220 | MS.gene47676:CDS | 55.0% | |
| !! | CTGGTGCTGTGATTGGGAAC+TGG | - | chr5.3:72826283-72826302 | MS.gene47676:CDS | 55.0% |
| GGTCCTATATTTGGGGGCGG+AGG | + | chr5.3:72825947-72825966 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 72825161 | 72826921 | 72825161 | ID=MS.gene47676 |
| chr5.3 | mRNA | 72825161 | 72826921 | 72825161 | ID=MS.gene47676.t1;Parent=MS.gene47676 |
| chr5.3 | exon | 72826747 | 72826921 | 72826747 | ID=MS.gene47676.t1.exon1;Parent=MS.gene47676.t1 |
| chr5.3 | CDS | 72826747 | 72826921 | 72826747 | ID=cds.MS.gene47676.t1;Parent=MS.gene47676.t1 |
| chr5.3 | exon | 72826469 | 72826649 | 72826469 | ID=MS.gene47676.t1.exon2;Parent=MS.gene47676.t1 |
| chr5.3 | CDS | 72826469 | 72826649 | 72826469 | ID=cds.MS.gene47676.t1;Parent=MS.gene47676.t1 |
| chr5.3 | exon | 72826211 | 72826358 | 72826211 | ID=MS.gene47676.t1.exon3;Parent=MS.gene47676.t1 |
| chr5.3 | CDS | 72826211 | 72826358 | 72826211 | ID=cds.MS.gene47676.t1;Parent=MS.gene47676.t1 |
| chr5.3 | exon | 72825749 | 72825818 | 72825749 | ID=MS.gene47676.t1.exon4;Parent=MS.gene47676.t1 |
| chr5.3 | CDS | 72825749 | 72825818 | 72825749 | ID=cds.MS.gene47676.t1;Parent=MS.gene47676.t1 |
| chr5.3 | exon | 72825161 | 72825318 | 72825161 | ID=MS.gene47676.t1.exon5;Parent=MS.gene47676.t1 |
| chr5.3 | CDS | 72825161 | 72825318 | 72825161 | ID=cds.MS.gene47676.t1;Parent=MS.gene47676.t1 |
| Gene Sequence |
| Protein sequence |
