Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47702.t1 | XP_003615750.2 | 91.3 | 665 | 23 | 2 | 1 | 631 | 1 | 664 | 0.00E+00 | 1195.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47702.t1 | O22397 | 68.7 | 633 | 163 | 2 | 1 | 599 | 1 | 632 | 6.1e-253 | 874.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47702.t1 | G7K729 | 91.3 | 665 | 23 | 2 | 1 | 631 | 1 | 664 | 0.0e+00 | 1195.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013424 | MS.gene47702 | PPI |
| MS.gene049395 | MS.gene47702 | PPI |
| MS.gene06767 | MS.gene47702 | PPI |
| MS.gene06523 | MS.gene47702 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47702.t1 | MTR_5g071860 | 91.278 | 665 | 23 | 2 | 1 | 631 | 1 | 664 | 0.0 | 1241 |
| MS.gene47702.t1 | MTR_5g071630 | 87.597 | 645 | 31 | 5 | 21 | 631 | 6 | 635 | 0.0 | 1129 |
| MS.gene47702.t1 | MTR_5g071827 | 90.295 | 577 | 21 | 2 | 89 | 631 | 1 | 576 | 0.0 | 1067 |
| MS.gene47702.t1 | MTR_5g034500 | 55.573 | 628 | 233 | 6 | 8 | 591 | 3 | 628 | 0.0 | 718 |
| MS.gene47702.t1 | MTR_6g033165 | 56.178 | 607 | 231 | 2 | 26 | 598 | 59 | 664 | 0.0 | 714 |
| MS.gene47702.t1 | MTR_6g007697 | 56.480 | 625 | 230 | 5 | 8 | 591 | 3 | 626 | 0.0 | 714 |
| MS.gene47702.t1 | MTR_3g094090 | 54.660 | 633 | 246 | 8 | 18 | 612 | 14 | 643 | 0.0 | 703 |
| MS.gene47702.t1 | MTR_8g099090 | 47.218 | 665 | 313 | 6 | 1 | 629 | 1 | 663 | 0.0 | 616 |
| MS.gene47702.t1 | MTR_2g438150 | 45.954 | 655 | 310 | 4 | 18 | 632 | 42 | 692 | 0.0 | 598 |
| MS.gene47702.t1 | MTR_2g438150 | 45.954 | 655 | 310 | 4 | 18 | 632 | 42 | 692 | 0.0 | 598 |
| MS.gene47702.t1 | MTR_4g094660 | 48.033 | 610 | 279 | 3 | 18 | 593 | 42 | 647 | 0.0 | 580 |
| MS.gene47702.t1 | MTR_2g438160 | 48.233 | 566 | 255 | 3 | 34 | 565 | 58 | 619 | 0.0 | 550 |
| MS.gene47702.t1 | MTR_8g063840 | 45.990 | 611 | 291 | 6 | 15 | 589 | 81 | 688 | 0.0 | 545 |
| MS.gene47702.t1 | MTR_7g108480 | 40.569 | 668 | 352 | 7 | 2 | 632 | 42 | 701 | 1.16e-179 | 530 |
| MS.gene47702.t1 | MTR_8g107510 | 44.771 | 612 | 290 | 10 | 24 | 594 | 19 | 623 | 8.87e-172 | 509 |
| MS.gene47702.t1 | MTR_2g008820 | 39.908 | 649 | 347 | 7 | 11 | 623 | 86 | 727 | 9.24e-172 | 511 |
| MS.gene47702.t1 | MTR_4g099260 | 39.222 | 668 | 353 | 7 | 26 | 647 | 65 | 725 | 5.55e-170 | 506 |
| MS.gene47702.t1 | MTR_3g094090 | 52.288 | 459 | 181 | 5 | 191 | 612 | 1 | 458 | 1.17e-168 | 496 |
| MS.gene47702.t1 | MTR_8g063900 | 41.357 | 619 | 316 | 7 | 13 | 591 | 51 | 662 | 5.72e-168 | 498 |
| MS.gene47702.t1 | MTR_8g022130 | 41.653 | 605 | 307 | 7 | 26 | 595 | 61 | 654 | 1.11e-162 | 486 |
| MS.gene47702.t1 | MTR_8g088200 | 40.000 | 610 | 324 | 4 | 19 | 594 | 30 | 631 | 1.22e-155 | 468 |
| MS.gene47702.t1 | MTR_5g070670 | 38.213 | 649 | 358 | 6 | 11 | 623 | 86 | 727 | 7.37e-152 | 460 |
| MS.gene47702.t1 | MTR_4g094660 | 47.186 | 462 | 210 | 1 | 167 | 594 | 1 | 462 | 6.49e-145 | 434 |
| MS.gene47702.t1 | MTR_8g022160 | 52.353 | 170 | 72 | 5 | 25 | 193 | 60 | 221 | 7.53e-45 | 161 |
| MS.gene47702.t1 | MTR_5g034590 | 51.095 | 137 | 65 | 1 | 428 | 564 | 126 | 260 | 1.22e-43 | 160 |
| MS.gene47702.t1 | MTR_5g034590 | 45.977 | 87 | 41 | 2 | 88 | 169 | 5 | 90 | 2.53e-13 | 72.4 |
| MS.gene47702.t1 | MTR_1g029310 | 33.333 | 126 | 77 | 2 | 177 | 302 | 12 | 130 | 2.53e-17 | 79.3 |
| MS.gene47702.t1 | MTR_6g045057 | 32.051 | 156 | 99 | 3 | 182 | 334 | 8 | 159 | 1.95e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47702.t1 | AT2G30070 | 71.154 | 624 | 145 | 2 | 1 | 590 | 1 | 623 | 0.0 | 937 |
| MS.gene47702.t1 | AT2G30070 | 68.327 | 502 | 125 | 1 | 123 | 590 | 2 | 503 | 0.0 | 733 |
| MS.gene47702.t1 | AT1G70300 | 57.870 | 629 | 216 | 8 | 8 | 591 | 3 | 627 | 0.0 | 731 |
| MS.gene47702.t1 | AT5G14880 | 55.108 | 646 | 241 | 8 | 10 | 607 | 4 | 648 | 0.0 | 709 |
| MS.gene47702.t1 | AT2G40540 | 53.261 | 644 | 260 | 6 | 18 | 625 | 15 | 653 | 0.0 | 694 |
| MS.gene47702.t1 | AT2G40540 | 53.261 | 644 | 260 | 6 | 18 | 625 | 15 | 653 | 0.0 | 694 |
| MS.gene47702.t1 | AT2G40540 | 53.261 | 644 | 260 | 6 | 18 | 625 | 15 | 653 | 0.0 | 694 |
| MS.gene47702.t1 | AT2G40540 | 53.261 | 644 | 260 | 6 | 18 | 625 | 15 | 653 | 0.0 | 694 |
| MS.gene47702.t1 | AT2G40540 | 53.261 | 644 | 260 | 6 | 18 | 625 | 15 | 653 | 0.0 | 694 |
| MS.gene47702.t1 | AT3G02050 | 53.571 | 644 | 263 | 3 | 1 | 609 | 1 | 643 | 0.0 | 687 |
| MS.gene47702.t1 | AT4G23640 | 49.307 | 649 | 290 | 5 | 18 | 631 | 4 | 648 | 0.0 | 632 |
| MS.gene47702.t1 | AT4G19960 | 48.495 | 598 | 270 | 3 | 30 | 593 | 62 | 655 | 0.0 | 584 |
| MS.gene47702.t1 | AT1G31120 | 48.361 | 610 | 277 | 3 | 18 | 593 | 49 | 654 | 0.0 | 580 |
| MS.gene47702.t1 | AT4G19960 | 47.394 | 614 | 269 | 4 | 30 | 593 | 62 | 671 | 0.0 | 575 |
| MS.gene47702.t1 | AT4G19960 | 46.474 | 624 | 270 | 4 | 30 | 593 | 62 | 681 | 0.0 | 570 |
| MS.gene47702.t1 | AT2G35060 | 47.306 | 594 | 275 | 3 | 34 | 593 | 66 | 655 | 0.0 | 569 |
| MS.gene47702.t1 | AT2G35060 | 47.306 | 594 | 275 | 3 | 34 | 593 | 66 | 655 | 0.0 | 569 |
| MS.gene47702.t1 | AT2G35060 | 47.306 | 594 | 275 | 3 | 34 | 593 | 66 | 655 | 0.0 | 569 |
| MS.gene47702.t1 | AT2G35060 | 47.227 | 595 | 275 | 4 | 34 | 593 | 66 | 656 | 0.0 | 564 |
| MS.gene47702.t1 | AT1G60160 | 44.252 | 635 | 312 | 7 | 11 | 606 | 74 | 705 | 0.0 | 560 |
| MS.gene47702.t1 | AT4G13420 | 41.838 | 631 | 319 | 8 | 2 | 593 | 32 | 653 | 1.28e-179 | 530 |
| MS.gene47702.t1 | AT4G33530 | 40.094 | 636 | 338 | 7 | 11 | 610 | 91 | 719 | 6.94e-159 | 479 |
| MS.gene47702.t1 | AT5G09400 | 40.065 | 619 | 332 | 5 | 11 | 593 | 90 | 705 | 2.51e-156 | 472 |
| MS.gene47702.t1 | AT4G19960 | 48.492 | 431 | 188 | 1 | 197 | 593 | 4 | 434 | 5.14e-146 | 437 |
| MS.gene47702.t1 | AT4G33530 | 39.212 | 482 | 254 | 4 | 164 | 610 | 14 | 491 | 2.50e-122 | 377 |
Find 119 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTCATCATCTTCTTTA+AGG | 0.071012 | 5.3:+72537407 | None:intergenic |
| GTCAATTCATTTGTTTGTTC+TGG | 0.193129 | 5.3:+72533686 | None:intergenic |
| ATTAATATCCAATTGATTTC+TGG | 0.209276 | 5.3:+72534776 | None:intergenic |
| AAAATGAAAGAGAGCGAAAT+TGG | 0.233599 | 5.3:+72534130 | None:intergenic |
| TCATCTGTTGGTTGCTGATT+AGG | 0.240442 | 5.3:+72536880 | None:intergenic |
| GGGTGCTTTCATTTATCTTC+TGG | 0.244227 | 5.3:-72537378 | MS.gene47702:CDS |
| CTGCAATGACTCGACTTTAT+AGG | 0.258661 | 5.3:+72533536 | None:intergenic |
| AGTATATCCGTGCCTGATTT+TGG | 0.260994 | 5.3:-72535128 | MS.gene47702:CDS |
| CAAAGATTAACAGTCCTTTC+TGG | 0.261123 | 5.3:+72536770 | None:intergenic |
| TTTCTGCAGAAGCTGTATTT+TGG | 0.274753 | 5.3:-72534955 | MS.gene47702:intron |
| CGAAGGAGTTCTACATGTTT+TGG | 0.288826 | 5.3:-72533814 | MS.gene47702:CDS |
| TTTCACCAGTCTATATGTTT+AGG | 0.299827 | 5.3:-72535501 | MS.gene47702:CDS |
| GGAGTTGTGCTTTCAATAAC+AGG | 0.310143 | 5.3:-72535436 | MS.gene47702:intron |
| AAAAGCCATGCTGCAACAAC+TGG | 0.319980 | 5.3:+72535586 | None:intergenic |
| TGTTGGCCATCACATGAAAA+TGG | 0.333547 | 5.3:+72533573 | None:intergenic |
| ATTGGGATCCATCCTCCTTC+AGG | 0.341677 | 5.3:+72534148 | None:intergenic |
| TAGCTGTCACAATTGGCCTT+AGG | 0.357454 | 5.3:-72534742 | MS.gene47702:CDS |
| CTTTGTTTAGCTGTCACAAT+TGG | 0.363159 | 5.3:-72534749 | MS.gene47702:CDS |
| GTGATTACTCCTGCAATATC+AGG | 0.363527 | 5.3:-72536712 | MS.gene47702:intron |
| AACACACCTTGAAATTGAAT+TGG | 0.363854 | 5.3:-72533616 | MS.gene47702:CDS |
| CATACTTCTAGCAAAATATA+TGG | 0.365015 | 5.3:-72534812 | MS.gene47702:CDS |
| CTCAAAACCACTGGCATTGA+AGG | 0.371128 | 5.3:-72535475 | MS.gene47702:CDS |
| CTGTTAATCTTTGTTCTGTT+GGG | 0.380410 | 5.3:-72536760 | MS.gene47702:CDS |
| CTTTCACTTTCATTGACATA+AGG | 0.382299 | 5.3:+72533860 | None:intergenic |
| CAAAGTCTTGGAGTAGTCTA+TGG | 0.389439 | 5.3:-72537487 | MS.gene47702:CDS |
| TTTATGTTCCAGAAATCAAT+TGG | 0.391774 | 5.3:-72534784 | MS.gene47702:CDS |
| GTAATGTTCACATGGAACTA+TGG | 0.394069 | 5.3:-72534100 | MS.gene47702:CDS |
| ACTGTTAATCTTTGTTCTGT+TGG | 0.397677 | 5.3:-72536761 | MS.gene47702:CDS |
| TTTCACTTTCATTGACATAA+GGG | 0.402173 | 5.3:+72533861 | None:intergenic |
| ATCAAAATACCTGATATTGC+AGG | 0.415433 | 5.3:+72536703 | None:intergenic |
| AGCTGTCACAATTGGCCTTA+GGG | 0.426551 | 5.3:-72534741 | MS.gene47702:CDS |
| ATGTGACCAATTCAATTTCA+AGG | 0.426738 | 5.3:+72533610 | None:intergenic |
| ACCGAAAATAGCCGGGATAC+CGG | 0.432386 | 5.3:+72533952 | None:intergenic |
| CACCCATGTATGCCAAAATC+AGG | 0.434049 | 5.3:+72535116 | None:intergenic |
| TGCACAGCATTGGCTTATGA+TGG | 0.434606 | 5.3:+72534865 | None:intergenic |
| AAGTGAATTCTTGCCTGGTA+TGG | 0.436212 | 5.3:+72535039 | None:intergenic |
| GTATACAAGACCTCATTCTC+AGG | 0.441568 | 5.3:-72537439 | MS.gene47702:CDS |
| CTGAAAATGAGACCGATTCC+TGG | 0.448779 | 5.3:+72533986 | None:intergenic |
| TTAGGCATGGTCTGTGTCCC+AGG | 0.451266 | 5.3:-72534004 | MS.gene47702:CDS |
| AACATGATGGGTCATGCATA+TGG | 0.464031 | 5.3:-72534713 | MS.gene47702:intron |
| GTCATGTCTGCTGATGATAA+TGG | 0.466473 | 5.3:-72537316 | MS.gene47702:CDS |
| GTTTGGTTAGCTTACTGTCA+TGG | 0.466721 | 5.3:+72535763 | None:intergenic |
| ATGGTCTGTGTCCCAGGAAT+CGG | 0.468639 | 5.3:-72533998 | MS.gene47702:CDS |
| AGGACTCGTCTTGAAGTTGT+TGG | 0.469508 | 5.3:+72533556 | None:intergenic |
| AACAATTTAATGCACAGCAT+TGG | 0.475035 | 5.3:+72534855 | None:intergenic |
| GAAGGATGGTTGTCATTAAG+TGG | 0.476467 | 5.3:-72535457 | MS.gene47702:CDS |
| TGTTCTACAAATTGCTCAGA+AGG | 0.477261 | 5.3:+72537708 | None:intergenic |
| AACAGTCCTTTCTGGAACCT+AGG | 0.480876 | 5.3:+72536778 | None:intergenic |
| AGATTAGTCATCAGCAGGAT+TGG | 0.484310 | 5.3:-72533839 | MS.gene47702:CDS |
| AAATTTACCAGCATTCCATC+AGG | 0.485062 | 5.3:-72533918 | MS.gene47702:CDS |
| ACTAACACCTGATGGAATGC+TGG | 0.486728 | 5.3:+72533911 | None:intergenic |
| GATATACTTGTCGGTTCCAT+CGG | 0.487236 | 5.3:+72535530 | None:intergenic |
| GCAGATAAATTCTCATCTGT+TGG | 0.490212 | 5.3:+72536868 | None:intergenic |
| TTGGGATCCATCCTCCTTCA+GGG | 0.490733 | 5.3:+72534149 | None:intergenic |
| TTGGGAACTTGCATGACAAT+TGG | 0.496346 | 5.3:-72536742 | MS.gene47702:CDS |
| CATGATGCTGAATGGAGAAA+AGG | 0.497785 | 5.3:+72535638 | None:intergenic |
| TCCTACAACAGCAGCAAAAG+TGG | 0.499235 | 5.3:+72534916 | None:intergenic |
| ATAAAATGACCGAAAATAGC+CGG | 0.499251 | 5.3:+72533944 | None:intergenic |
| GTGAGCAAGATGTTATCCTT+AGG | 0.504871 | 5.3:-72534034 | MS.gene47702:CDS |
| AAATGAAAGAGAGCGAAATT+GGG | 0.505248 | 5.3:+72534131 | None:intergenic |
| CAGAAGATTCTGCTGATACA+TGG | 0.509581 | 5.3:-72536837 | MS.gene47702:CDS |
| AATGAATTGACTATAGATGA+TGG | 0.510618 | 5.3:-72533674 | MS.gene47702:CDS |
| TTTAGGTTTCTCAAAACCAC+TGG | 0.512735 | 5.3:-72535484 | MS.gene47702:CDS |
| TTAGCTTACTGTCATGGAGT+TGG | 0.515817 | 5.3:+72535769 | None:intergenic |
| TAATCTTGCTTCCGGTATCC+CGG | 0.517669 | 5.3:-72533963 | MS.gene47702:CDS |
| ACTCTAGCATACCAAAGTCT+TGG | 0.519686 | 5.3:-72537499 | MS.gene47702:CDS |
| CATAGACTACTCCAAGACTT+TGG | 0.520654 | 5.3:+72537488 | None:intergenic |
| GAGGTCTTGTATACATAAAG+AGG | 0.520785 | 5.3:+72537448 | None:intergenic |
| GTGAAAGATTAGTCATCAGC+AGG | 0.524208 | 5.3:-72533844 | MS.gene47702:CDS |
| CAAAACATGTAGAACTCCTT+CGG | 0.524395 | 5.3:+72533815 | None:intergenic |
| CCTTAGGGATACAAACATGA+TGG | 0.530819 | 5.3:-72534726 | MS.gene47702:CDS |
| ATATGTATCAGAATTTAAAG+AGG | 0.531603 | 5.3:-72537543 | MS.gene47702:intron |
| TGTTCTTTGAAAAGCACCCT+AGG | 0.532742 | 5.3:-72536795 | MS.gene47702:CDS |
| ATGTGTTCCATGATGCTGAA+TGG | 0.533306 | 5.3:+72535630 | None:intergenic |
| TGAAAATGAGACCGATTCCT+GGG | 0.537425 | 5.3:+72533987 | None:intergenic |
| ATAGTTCCATGTGAACATTA+CGG | 0.537461 | 5.3:+72534102 | None:intergenic |
| AACATAAATGTGGAAAATCT+CGG | 0.537686 | 5.3:-72533647 | MS.gene47702:CDS |
| CATGCCTAAGCATGGTCCTA+AGG | 0.539255 | 5.3:+72534018 | None:intergenic |
| GCTCAATTTCCCTGAGAATG+AGG | 0.540286 | 5.3:+72537429 | None:intergenic |
| GCAAAGTCCCTGAAGGAGGA+TGG | 0.548872 | 5.3:-72534156 | MS.gene47702:CDS |
| CCATCATGTTTGTATCCCTA+AGG | 0.550781 | 5.3:+72534726 | None:intergenic |
| ACAGTCCTTTCTGGAACCTA+GGG | 0.551879 | 5.3:+72536779 | None:intergenic |
| TTATCCTTAGGACCATGCTT+AGG | 0.552419 | 5.3:-72534022 | MS.gene47702:CDS |
| CCACTTTGATGTGGAAAACA+AGG | 0.552985 | 5.3:-72534062 | MS.gene47702:CDS |
| CATCAGCAGGATTGGTCCGA+AGG | 0.553089 | 5.3:-72533831 | MS.gene47702:CDS |
| TGATGTGGAAAACAAGGTCT+CGG | 0.553141 | 5.3:-72534056 | MS.gene47702:CDS |
| AGTTTCTACAAAGCCATACC+AGG | 0.558577 | 5.3:-72535052 | MS.gene47702:intron |
| TAAAATGACCGAAAATAGCC+GGG | 0.558708 | 5.3:+72533945 | None:intergenic |
| GCATGTCTTTGTAACCGTAT+CGG | 0.567297 | 5.3:+72533783 | None:intergenic |
| AGAAACCTAAACATATAGAC+TGG | 0.570041 | 5.3:+72535496 | None:intergenic |
| TCTGAGCAATTTGTAGAACA+AGG | 0.575722 | 5.3:-72537705 | MS.gene47702:CDS |
| AAAGCCATGCTGCAACAACT+GGG | 0.580024 | 5.3:+72535587 | None:intergenic |
| AAAGTGCACGATATACTTGT+CGG | 0.583744 | 5.3:+72535521 | None:intergenic |
| CGGATATACTAAACATGTGA+AGG | 0.584321 | 5.3:+72535141 | None:intergenic |
| AACAACTGGGGCAAACATGA+AGG | 0.584606 | 5.3:+72535600 | None:intergenic |
| GGAGACAATGTATGCTGACA+TGG | 0.585033 | 5.3:-72535294 | MS.gene47702:CDS |
| AAACCACTGGCATTGAAGGA+TGG | 0.591920 | 5.3:-72535471 | MS.gene47702:CDS |
| TTGCCCCAGTTGTTGCAGCA+TGG | 0.595472 | 5.3:-72535591 | MS.gene47702:CDS |
| TGATGGAAGAAACATAAATG+TGG | 0.597494 | 5.3:-72533657 | MS.gene47702:CDS |
| TTATGGCCGTAATGTTCACA+TGG | 0.605716 | 5.3:-72534108 | MS.gene47702:CDS |
| TATACAAGACCTCATTCTCA+GGG | 0.606947 | 5.3:-72537438 | MS.gene47702:CDS |
| GTCTGCAAAGTCCCTGAAGG+AGG | 0.607712 | 5.3:-72534160 | MS.gene47702:CDS |
| CAACCATCCTTCAATGCCAG+TGG | 0.609172 | 5.3:+72535468 | None:intergenic |
| CTTAGGGATACAAACATGAT+GGG | 0.610422 | 5.3:-72534725 | MS.gene47702:CDS |
| GAAGAAACACCACTTTGATG+TGG | 0.612989 | 5.3:-72534071 | MS.gene47702:CDS |
| TCTGTCTGCAAAGTCCCTGA+AGG | 0.615084 | 5.3:-72534163 | MS.gene47702:CDS |
| GTATATACAATATATTCCGA+TGG | 0.631291 | 5.3:-72535546 | MS.gene47702:CDS |
| CTTAGGACCATGCTTAGGCA+TGG | 0.631671 | 5.3:-72534017 | MS.gene47702:CDS |
| AAGCACCCTAGGTTCCAGAA+AGG | 0.633339 | 5.3:-72536784 | MS.gene47702:CDS |
| GTATGAACAATCTTGACTCG+AGG | 0.638636 | 5.3:+72534830 | None:intergenic |
| ACACAGACCATGCCTAAGCA+TGG | 0.642626 | 5.3:+72534010 | None:intergenic |
| ATGTATGCCAAAATCAGGCA+CGG | 0.648736 | 5.3:+72535121 | None:intergenic |
| ACTTGCATGACAATTGGTGA+TGG | 0.676889 | 5.3:-72536736 | MS.gene47702:CDS |
| AGAACAAGGAATATCTCACC+AGG | 0.679281 | 5.3:-72537691 | MS.gene47702:intron |
| TCTGCTGATGATAATGGAGA+AGG | 0.680990 | 5.3:-72537310 | MS.gene47702:intron |
| CAATTGTGACAGCTAAACAA+AGG | 0.683793 | 5.3:+72534750 | None:intergenic |
| AAGCCATGCTGCAACAACTG+GGG | 0.696949 | 5.3:+72535588 | None:intergenic |
| TGTTGTCACAAACATAACAG+TGG | 0.717093 | 5.3:+72534291 | None:intergenic |
| GAGACAATGTATGCTGACAT+GGG | 0.720378 | 5.3:-72535293 | MS.gene47702:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAGGTATTTAATAT+AGG | + | chr5.3:72534746-72534765 | None:intergenic | 10.0% |
| !!! | AAAAAAAGGTATTTAATATA+GGG | + | chr5.3:72534745-72534764 | None:intergenic | 10.0% |
| !! | ATATTATTTATGATAACTCT+AGG | - | chr5.3:72536248-72536267 | MS.gene47702:intron | 15.0% |
| !! | TATTATTTATGATAACTCTA+GGG | - | chr5.3:72536249-72536268 | MS.gene47702:intron | 15.0% |
| !! | TTAACTAATTATCCTAATTA+AGG | + | chr5.3:72534245-72534264 | None:intergenic | 15.0% |
| !!! | AAATCAAATGTTTTCATTTT+TGG | + | chr5.3:72535135-72535154 | None:intergenic | 15.0% |
| !!! | TAAATTTAAACTACTTTTCT+TGG | - | chr5.3:72536910-72536929 | MS.gene47702:CDS | 15.0% |
| !! | AAATAATATCGATATCTTTG+TGG | + | chr5.3:72536237-72536256 | None:intergenic | 20.0% |
| !! | AATACATGATTCTGTAATTA+AGG | + | chr5.3:72534780-72534799 | None:intergenic | 20.0% |
| !! | AATTTGTCATATAAAAGCTT+AGG | - | chr5.3:72533624-72533643 | MS.gene47702:CDS | 20.0% |
| !! | ACACAATTTCATATTTGAAA+TGG | + | chr5.3:72533591-72533610 | None:intergenic | 20.0% |
| !! | ATATGTATCAGAATTTAAAG+AGG | - | chr5.3:72533700-72533719 | MS.gene47702:CDS | 20.0% |
| !! | ATTATAATTGTTTGGAAACA+AGG | - | chr5.3:72536993-72537012 | MS.gene47702:intron | 20.0% |
| !! | ATTGTTAAATCTAAACACAA+TGG | + | chr5.3:72536570-72536589 | None:intergenic | 20.0% |
| !! | CACTAGTAATTATAATTGTT+TGG | - | chr5.3:72536985-72537004 | MS.gene47702:intron | 20.0% |
| !! | GGATGAAAAAGAAAAAAAAA+AGG | + | chr5.3:72534759-72534778 | None:intergenic | 20.0% |
| !! | TATTATCAATTTCTTATGCT+TGG | - | chr5.3:72533673-72533692 | MS.gene47702:CDS | 20.0% |
| !! | TCAATTATAACTACTCATTA+AGG | - | chr5.3:72534036-72534055 | MS.gene47702:CDS | 20.0% |
| !! | TTATAATTGTTTGGAAACAA+GGG | - | chr5.3:72536994-72537013 | MS.gene47702:intron | 20.0% |
| !!! | AAGATGATGAAGAAATTTTT+GGG | - | chr5.3:72533844-72533863 | MS.gene47702:CDS | 20.0% |
| !!! | ATGGATAACATAATTCTTTT+TGG | + | chr5.3:72535184-72535203 | None:intergenic | 20.0% |
| !!! | ATTAATATCCAATTGATTTC+TGG | + | chr5.3:72536470-72536489 | None:intergenic | 20.0% |
| !!! | TATGCTTTTAATAGACATAA+TGG | + | chr5.3:72535517-72535536 | None:intergenic | 20.0% |
| !!! | TTTTTATCCTAAAATGTGTT+AGG | - | chr5.3:72536592-72536611 | MS.gene47702:intron | 20.0% |
| ! | AACATAAATGTGGAAAATCT+CGG | - | chr5.3:72537596-72537615 | MS.gene47702:intron | 25.0% |
| ! | AATGAATTGACTATAGATGA+TGG | - | chr5.3:72537569-72537588 | MS.gene47702:intron | 25.0% |
| ! | CATACTTCTAGCAAAATATA+TGG | - | chr5.3:72536431-72536450 | MS.gene47702:intron | 25.0% |
| ! | CTTTCTTATGTTCCTTAATT+AGG | - | chr5.3:72534230-72534249 | MS.gene47702:intron | 25.0% |
| ! | GTATATACAATATATTCCGA+TGG | - | chr5.3:72535697-72535716 | MS.gene47702:intron | 25.0% |
| ! | TACAAACAAAAGACACTTTA+GGG | - | chr5.3:72536773-72536792 | MS.gene47702:CDS | 25.0% |
| ! | TCAGCTAAAGTTACAATTTA+AGG | + | chr5.3:72535239-72535258 | None:intergenic | 25.0% |
| ! | TCATTATGATACTTGAAGTA+TGG | - | chr5.3:72536882-72536901 | MS.gene47702:CDS | 25.0% |
| ! | TTAATAAGCTTAAAAGCCAA+AGG | + | chr5.3:72534010-72534029 | None:intergenic | 25.0% |
| ! | TTACAAACAAAAGACACTTT+AGG | - | chr5.3:72536772-72536791 | MS.gene47702:CDS | 25.0% |
| ! | TTTATGTTCCAGAAATCAAT+TGG | - | chr5.3:72536459-72536478 | MS.gene47702:intron | 25.0% |
| ! | TTTCACTTTCATTGACATAA+GGG | + | chr5.3:72537385-72537404 | None:intergenic | 25.0% |
| ! | TTTCTTCATCATCTTCTTTA+AGG | + | chr5.3:72533839-72533858 | None:intergenic | 25.0% |
| !! | AATATCCTTTATGTGAGTTT+TGG | + | chr5.3:72534096-72534115 | None:intergenic | 25.0% |
| !! | AGATGATGAAGAAATTTTTG+GGG | - | chr5.3:72533845-72533864 | MS.gene47702:CDS | 25.0% |
| !! | CTCTTGAAACAGTATATTTT+CGG | + | chr5.3:72535343-72535362 | None:intergenic | 25.0% |
| !! | CTGTCATCATTTTATTCATT+TGG | + | chr5.3:72534136-72534155 | None:intergenic | 25.0% |
| !! | GAAGATGATGAAGAAATTTT+TGG | - | chr5.3:72533843-72533862 | MS.gene47702:CDS | 25.0% |
| !! | TAATGGTAATGATAGAAGTT+TGG | + | chr5.3:72535500-72535519 | None:intergenic | 25.0% |
| !! | TCTGTTTAAAATAACTGATG+TGG | - | chr5.3:72534825-72534844 | MS.gene47702:CDS | 25.0% |
| !!! | ATGAAAACATTTGATTTTGC+AGG | - | chr5.3:72535138-72535157 | MS.gene47702:CDS | 25.0% |
| !!! | ATTTGTTGTACAACCAAATT+TGG | + | chr5.3:72535868-72535887 | None:intergenic | 25.0% |
| !!! | GTCTTTTGTTTGTAATTCTA+TGG | + | chr5.3:72536767-72536786 | None:intergenic | 25.0% |
| !!! | TACTTGTTGTACAAGTAAAA+GGG | - | chr5.3:72534645-72534664 | MS.gene47702:intron | 25.0% |
| !!! | TGAAAACATTTGATTTTGCA+GGG | - | chr5.3:72535139-72535158 | MS.gene47702:CDS | 25.0% |
| !!! | TGACATTTTGACTAACTAAT+AGG | + | chr5.3:72535835-72535854 | None:intergenic | 25.0% |
| !!! | TGGTCTTATAAAAAACAGAA+TGG | - | chr5.3:72534672-72534691 | MS.gene47702:intron | 25.0% |
| !!! | TTACTTGTTGTACAAGTAAA+AGG | - | chr5.3:72534644-72534663 | MS.gene47702:intron | 25.0% |
| AAAATGAAAGAGAGCGAAAT+TGG | + | chr5.3:72537116-72537135 | None:intergenic | 30.0% | |
| AAAGCTTATGTTGTAAACAG+AGG | + | chr5.3:72535086-72535105 | None:intergenic | 30.0% | |
| AAATGAAAGAGAGCGAAATT+GGG | + | chr5.3:72537115-72537134 | None:intergenic | 30.0% | |
| AACAATTTAATGCACAGCAT+TGG | + | chr5.3:72536391-72536410 | None:intergenic | 30.0% | |
| AACACACCTTGAAATTGAAT+TGG | - | chr5.3:72537627-72537646 | MS.gene47702:intron | 30.0% | |
| AATGGAAAAAAATGAGTACC+TGG | + | chr5.3:72533573-72533592 | None:intergenic | 30.0% | |
| ACATCATAATATGATCTGAG+AGG | + | chr5.3:72534577-72534596 | None:intergenic | 30.0% | |
| ACTGTTAATCTTTGTTCTGT+TGG | - | chr5.3:72534482-72534501 | MS.gene47702:intron | 30.0% | |
| AGAAACCTAAACATATAGAC+TGG | + | chr5.3:72535750-72535769 | None:intergenic | 30.0% | |
| ATAAAATGACCGAAAATAGC+CGG | + | chr5.3:72537302-72537321 | None:intergenic | 30.0% | |
| ATACAAAAACTAACACCTGA+TGG | + | chr5.3:72537343-72537362 | None:intergenic | 30.0% | |
| ATAGTTCCATGTGAACATTA+CGG | + | chr5.3:72537144-72537163 | None:intergenic | 30.0% | |
| ATCAAAATACCTGATATTGC+AGG | + | chr5.3:72534543-72534562 | None:intergenic | 30.0% | |
| ATCATAATATGATCTGAGAG+GGG | + | chr5.3:72534575-72534594 | None:intergenic | 30.0% | |
| ATGTGACCAATTCAATTTCA+AGG | + | chr5.3:72537636-72537655 | None:intergenic | 30.0% | |
| CAAATCAAGAGAAATCTCTT+TGG | - | chr5.3:72534187-72534206 | MS.gene47702:intron | 30.0% | |
| CAATCTTCAATCATTGATGA+TGG | - | chr5.3:72533958-72533977 | MS.gene47702:CDS | 30.0% | |
| CATCATAATATGATCTGAGA+GGG | + | chr5.3:72534576-72534595 | None:intergenic | 30.0% | |
| CTGTTAATCTTTGTTCTGTT+GGG | - | chr5.3:72534483-72534502 | MS.gene47702:intron | 30.0% | |
| CTTTCACTTTCATTGACATA+AGG | + | chr5.3:72537386-72537405 | None:intergenic | 30.0% | |
| GTCAATTCATTTGTTTGTTC+TGG | + | chr5.3:72537560-72537579 | None:intergenic | 30.0% | |
| GTTGATCCTTATACAAAGTT+CGG | - | chr5.3:72535362-72535381 | MS.gene47702:intron | 30.0% | |
| TGATGGAAGAAACATAAATG+TGG | - | chr5.3:72537586-72537605 | MS.gene47702:intron | 30.0% | |
| TTAGGGACATTATCATAACT+CGG | - | chr5.3:72536790-72536809 | MS.gene47702:CDS | 30.0% | |
| TTTCACCAGTCTATATGTTT+AGG | - | chr5.3:72535742-72535761 | MS.gene47702:intron | 30.0% | |
| ! | ATTTTCAGTAATCTTGCTTC+CGG | - | chr5.3:72537272-72537291 | MS.gene47702:intron | 30.0% |
| ! | TGTTTACCATTTTCATGTGA+TGG | - | chr5.3:72537664-72537683 | MS.gene47702:intron | 30.0% |
| !! | ATTTTGGCCAGTTTTTATAG+TGG | - | chr5.3:72536304-72536323 | MS.gene47702:intron | 30.0% |
| !! | GTCTCATGTATCATTTTAGT+TGG | - | chr5.3:72535582-72535601 | MS.gene47702:CDS | 30.0% |
| !! | TTCGCTCTCTTTCATTTTTA+TGG | - | chr5.3:72537118-72537137 | MS.gene47702:intron | 30.0% |
| !! | TTTTTCAGCACTCTCAATAA+AGG | - | chr5.3:72535976-72535995 | MS.gene47702:intron | 30.0% |
| !!! | ATCATTGATGATGGTACTTT+TGG | - | chr5.3:72533967-72533986 | MS.gene47702:CDS | 30.0% |
| !!! | CAATATCAGGTATTTTGATC+AGG | - | chr5.3:72534544-72534563 | MS.gene47702:intron | 30.0% |
| AAAGTGCACGATATACTTGT+CGG | + | chr5.3:72535725-72535744 | None:intergenic | 35.0% | |
| AAAGTGGCCACTATAAAAAC+TGG | + | chr5.3:72536314-72536333 | None:intergenic | 35.0% | |
| AAATTTACCAGCATTCCATC+AGG | - | chr5.3:72537325-72537344 | MS.gene47702:CDS | 35.0% | |
| AACTAACATGAACATCAGCA+CGG | + | chr5.3:72534993-72535012 | None:intergenic | 35.0% | |
| ACCGAAATTCGCTCTATTTA+TGG | + | chr5.3:72534716-72534735 | None:intergenic | 35.0% | |
| ATCTGTGACATTGCTAATGA+TGG | + | chr5.3:72535203-72535222 | None:intergenic | 35.0% | |
| CAAAACATGTAGAACTCCTT+CGG | + | chr5.3:72537431-72537450 | None:intergenic | 35.0% | |
| CAAAGATTAACAGTCCTTTC+TGG | + | chr5.3:72534476-72534495 | None:intergenic | 35.0% | |
| CAATTGTGACAGCTAAACAA+AGG | + | chr5.3:72536496-72536515 | None:intergenic | 35.0% | |
| CATATTTATCCTCCATGGAA+CGG | + | chr5.3:72534871-72534890 | None:intergenic | 35.0% | |
| CCCATAAATAGAGCGAATTT+CGG | - | chr5.3:72534712-72534731 | MS.gene47702:intron | 35.0% | |
| CCGAAATTCGCTCTATTTAT+GGG | + | chr5.3:72534715-72534734 | None:intergenic | 35.0% | |
| CGAAATTCGCTCTATTTATG+GGG | + | chr5.3:72534714-72534733 | None:intergenic | 35.0% | |
| CGGATATACTAAACATGTGA+AGG | + | chr5.3:72536105-72536124 | None:intergenic | 35.0% | |
| CTTACATGTTTCCTGTTGTT+TGG | - | chr5.3:72537029-72537048 | MS.gene47702:intron | 35.0% | |
| CTTAGGGATACAAACATGAT+GGG | - | chr5.3:72536518-72536537 | MS.gene47702:intron | 35.0% | |
| GCAGATAAATTCTCATCTGT+TGG | + | chr5.3:72534378-72534397 | None:intergenic | 35.0% | |
| GTAATGTTCACATGGAACTA+TGG | - | chr5.3:72537143-72537162 | MS.gene47702:intron | 35.0% | |
| GTCATCTTACATGGAAATGA+TGG | - | chr5.3:72535054-72535073 | MS.gene47702:CDS | 35.0% | |
| GTTCAATAGATCCAAACAAC+AGG | + | chr5.3:72537043-72537062 | None:intergenic | 35.0% | |
| TAAAAATGAGGAGATAGACG+TGG | - | chr5.3:72534949-72534968 | MS.gene47702:CDS | 35.0% | |
| TAAAATGACCGAAAATAGCC+GGG | + | chr5.3:72537301-72537320 | None:intergenic | 35.0% | |
| TAAACAGAAAGTTGACGCTA+CGG | + | chr5.3:72534813-72534832 | None:intergenic | 35.0% | |
| TACTGAAATGAGACACGAAA+AGG | + | chr5.3:72535419-72535438 | None:intergenic | 35.0% | |
| TAGCTCACTATCATCAAATG+TGG | - | chr5.3:72535014-72535033 | MS.gene47702:intron | 35.0% | |
| TATACAAGACCTCATTCTCA+GGG | - | chr5.3:72533805-72533824 | MS.gene47702:CDS | 35.0% | |
| TATCACCTTAATATCAGCTC+CGG | - | chr5.3:72534619-72534638 | MS.gene47702:intron | 35.0% | |
| TCACGAAGATTGTCCAAATT+TGG | - | chr5.3:72535852-72535871 | MS.gene47702:intron | 35.0% | |
| TCTGAGCAATTTGTAGAACA+AGG | - | chr5.3:72533538-72533557 | MS.gene47702:CDS | 35.0% | |
| TCTTAAAGTGAATTCTTGCC+TGG | + | chr5.3:72536212-72536231 | None:intergenic | 35.0% | |
| TGAACACGTCAGTAAAAATG+AGG | - | chr5.3:72534937-72534956 | MS.gene47702:CDS | 35.0% | |
| TGTTCTACAAATTGCTCAGA+AGG | + | chr5.3:72533538-72533557 | None:intergenic | 35.0% | |
| TGTTGTCACAAACATAACAG+TGG | + | chr5.3:72536955-72536974 | None:intergenic | 35.0% | |
| TTCAGCCAAAACTCACATAA+AGG | - | chr5.3:72534088-72534107 | MS.gene47702:CDS | 35.0% | |
| TTCCTATGTGATACCATCTT+AGG | - | chr5.3:72535923-72535942 | MS.gene47702:intron | 35.0% | |
| TTGTTCACTTATTGTACTGC+AGG | - | chr5.3:72534282-72534301 | MS.gene47702:intron | 35.0% | |
| ! | ATATTAAGGTGATAGCTTGC+AGG | + | chr5.3:72534613-72534632 | None:intergenic | 35.0% |
| ! | CTTTGTTTAGCTGTCACAAT+TGG | - | chr5.3:72536494-72536513 | MS.gene47702:intron | 35.0% |
| ! | CTTTTGTGTATCAGTGGTAT+TGG | - | chr5.3:72535675-72535694 | MS.gene47702:CDS | 35.0% |
| ! | GAGGTCTTGTATACATAAAG+AGG | + | chr5.3:72533798-72533817 | None:intergenic | 35.0% |
| ! | TCAGTATTTTCAGCAGTTTC+AGG | - | chr5.3:72535433-72535452 | MS.gene47702:intron | 35.0% |
| ! | TCATTTTCCCTAAATGTGTG+AGG | + | chr5.3:72536842-72536861 | None:intergenic | 35.0% |
| ! | TGTGTCACTATCACCTAATA+TGG | + | chr5.3:72534907-72534926 | None:intergenic | 35.0% |
| ! | TTTAGGTTTCTCAAAACCAC+TGG | - | chr5.3:72535759-72535778 | MS.gene47702:intron | 35.0% |
| ! | TTTCTGCAGAAGCTGTATTT+TGG | - | chr5.3:72536288-72536307 | MS.gene47702:intron | 35.0% |
| !!! | AACTACTTTTCTTGGTTTGC+AGG | - | chr5.3:72536918-72536937 | MS.gene47702:CDS | 35.0% |
| !!! | ACTACTTTTCTTGGTTTGCA+GGG | - | chr5.3:72536919-72536938 | MS.gene47702:CDS | 35.0% |
| !!! | ATGTTTTCATTTTTGGTCCC+TGG | + | chr5.3:72535128-72535147 | None:intergenic | 35.0% |
| !!! | TCAAATGTGGTTTTGACATG+TGG | - | chr5.3:72535027-72535046 | MS.gene47702:intron | 35.0% |
| AAGTGAATTCTTGCCTGGTA+TGG | + | chr5.3:72536207-72536226 | None:intergenic | 40.0% | |
| ACTCTAGCATACCAAAGTCT+TGG | - | chr5.3:72533744-72533763 | MS.gene47702:CDS | 40.0% | |
| ACTTGCATGACAATTGGTGA+TGG | - | chr5.3:72534507-72534526 | MS.gene47702:intron | 40.0% | |
| ACTTGTACAACAAGTAACCC+CGG | + | chr5.3:72534641-72534660 | None:intergenic | 40.0% | |
| AGAACAAGGAATATCTCACC+AGG | - | chr5.3:72533552-72533571 | MS.gene47702:CDS | 40.0% | |
| AGTAAATGACATCCGTTCCA+TGG | - | chr5.3:72534856-72534875 | MS.gene47702:CDS | 40.0% | |
| AGTTTCTACAAAGCCATACC+AGG | - | chr5.3:72536191-72536210 | MS.gene47702:intron | 40.0% | |
| ATCACCTTAATATCAGCTCC+GGG | - | chr5.3:72534620-72534639 | MS.gene47702:intron | 40.0% | |
| ATGTATGCCAAAATCAGGCA+CGG | + | chr5.3:72536125-72536144 | None:intergenic | 40.0% | |
| ATGTGATACCATCTTAGGTG+TGG | - | chr5.3:72535928-72535947 | MS.gene47702:intron | 40.0% | |
| ATGTGTTCCATGATGCTGAA+TGG | + | chr5.3:72535616-72535635 | None:intergenic | 40.0% | |
| CAAAGTCTTGGAGTAGTCTA+TGG | - | chr5.3:72533756-72533775 | MS.gene47702:CDS | 40.0% | |
| CACCTAAGATGGTATCACAT+AGG | + | chr5.3:72535928-72535947 | None:intergenic | 40.0% | |
| CAGAAGATTCTGCTGATACA+TGG | - | chr5.3:72534406-72534425 | MS.gene47702:intron | 40.0% | |
| CAGCTTCTGCAGAAAAATAG+TGG | + | chr5.3:72536283-72536302 | None:intergenic | 40.0% | |
| CATAGACTACTCCAAGACTT+TGG | + | chr5.3:72533758-72533777 | None:intergenic | 40.0% | |
| CATGATGCTGAATGGAGAAA+AGG | + | chr5.3:72535608-72535627 | None:intergenic | 40.0% | |
| CCACATGTCAACACCATATT+AGG | - | chr5.3:72534891-72534910 | MS.gene47702:CDS | 40.0% | |
| CCACTTTGATGTGGAAAACA+AGG | - | chr5.3:72537181-72537200 | MS.gene47702:intron | 40.0% | |
| CCATCATGTTTGTATCCCTA+AGG | + | chr5.3:72536520-72536539 | None:intergenic | 40.0% | |
| CCTTAGGGATACAAACATGA+TGG | - | chr5.3:72536517-72536536 | MS.gene47702:intron | 40.0% | |
| CTGCAATGACTCGACTTTAT+AGG | + | chr5.3:72537710-72537729 | None:intergenic | 40.0% | |
| GAAATGAGACACGAAAAGGA+TGG | + | chr5.3:72535415-72535434 | None:intergenic | 40.0% | |
| GAAGAAACACCACTTTGATG+TGG | - | chr5.3:72537172-72537191 | MS.gene47702:intron | 40.0% | |
| GAAGGATGGTTGTCATTAAG+TGG | - | chr5.3:72535786-72535805 | MS.gene47702:CDS | 40.0% | |
| GAGACAATGTATGCTGACAT+GGG | - | chr5.3:72535950-72535969 | MS.gene47702:intron | 40.0% | |
| GATTACGCCTCACACATTTA+GGG | - | chr5.3:72536832-72536851 | MS.gene47702:CDS | 40.0% | |
| GCATGTCTTTGTAACCGTAT+CGG | + | chr5.3:72537463-72537482 | None:intergenic | 40.0% | |
| GGAGTTGTGCTTTCAATAAC+AGG | - | chr5.3:72535807-72535826 | MS.gene47702:CDS | 40.0% | |
| GGGTGCTTTCATTTATCTTC+TGG | - | chr5.3:72533865-72533884 | MS.gene47702:CDS | 40.0% | |
| GTATACAAGACCTCATTCTC+AGG | - | chr5.3:72533804-72533823 | MS.gene47702:CDS | 40.0% | |
| GTCATGTCTGCTGATGATAA+TGG | - | chr5.3:72533927-72533946 | MS.gene47702:CDS | 40.0% | |
| GTGAGCAAGATGTTATCCTT+AGG | - | chr5.3:72537209-72537228 | MS.gene47702:intron | 40.0% | |
| GTGATTACTCCTGCAATATC+AGG | - | chr5.3:72534531-72534550 | MS.gene47702:intron | 40.0% | |
| GTGTCTTCAAGTAGTCAACT+TGG | - | chr5.3:72536740-72536759 | MS.gene47702:CDS | 40.0% | |
| GTGTGTCTTATCAGTTCCTT+TGG | - | chr5.3:72533991-72534010 | MS.gene47702:CDS | 40.0% | |
| TGATGTGGAAAACAAGGTCT+CGG | - | chr5.3:72537187-72537206 | MS.gene47702:intron | 40.0% | |
| TGATTACGCCTCACACATTT+AGG | - | chr5.3:72536831-72536850 | MS.gene47702:CDS | 40.0% | |
| TGTACAAGTAAAAGGGAGCT+TGG | - | chr5.3:72534652-72534671 | MS.gene47702:intron | 40.0% | |
| TGTGGCATATTTATCCTCCA+TGG | + | chr5.3:72534876-72534895 | None:intergenic | 40.0% | |
| TGTGGCATTGTCATCTTACA+TGG | - | chr5.3:72535045-72535064 | MS.gene47702:intron | 40.0% | |
| TGTTGGCCATCACATGAAAA+TGG | + | chr5.3:72537673-72537692 | None:intergenic | 40.0% | |
| TTAGCTTACTGTCATGGAGT+TGG | + | chr5.3:72535477-72535496 | None:intergenic | 40.0% | |
| TTATCCTTAGGACCATGCTT+AGG | - | chr5.3:72537221-72537240 | MS.gene47702:intron | 40.0% | |
| TTATGGCCGTAATGTTCACA+TGG | - | chr5.3:72537135-72537154 | MS.gene47702:intron | 40.0% | |
| TTCACTTATTGTACTGCAGG+AGG | - | chr5.3:72534285-72534304 | MS.gene47702:intron | 40.0% | |
| TTGGGAACTTGCATGACAAT+TGG | - | chr5.3:72534501-72534520 | MS.gene47702:intron | 40.0% | |
| ! | AGATTAGTCATCAGCAGGAT+TGG | - | chr5.3:72537404-72537423 | MS.gene47702:CDS | 40.0% |
| ! | AGTATATCCGTGCCTGATTT+TGG | - | chr5.3:72536115-72536134 | MS.gene47702:intron | 40.0% |
| ! | CGAAGGAGTTCTACATGTTT+TGG | - | chr5.3:72537429-72537448 | MS.gene47702:CDS | 40.0% |
| ! | CTTTTCTCCATTCAGCATCA+TGG | - | chr5.3:72535606-72535625 | MS.gene47702:CDS | 40.0% |
| ! | GTATGAACAATCTTGACTCG+AGG | + | chr5.3:72536416-72536435 | None:intergenic | 40.0% |
| ! | GTGAAAGATTAGTCATCAGC+AGG | - | chr5.3:72537399-72537418 | MS.gene47702:CDS | 40.0% |
| ! | TCATCTGTTGGTTGCTGATT+AGG | + | chr5.3:72534366-72534385 | None:intergenic | 40.0% |
| ! | TGAAAATGAGACCGATTCCT+GGG | + | chr5.3:72537259-72537278 | None:intergenic | 40.0% |
| !! | AACATGATGGGTCATGCATA+TGG | - | chr5.3:72536530-72536549 | MS.gene47702:intron | 40.0% |
| !! | CAGGTACCGAACTTTGTATA+AGG | + | chr5.3:72535371-72535390 | None:intergenic | 40.0% |
| !! | CCTAATATGGTGTTGACATG+TGG | + | chr5.3:72534894-72534913 | None:intergenic | 40.0% |
| !! | GATATACTTGTCGGTTCCAT+CGG | + | chr5.3:72535716-72535735 | None:intergenic | 40.0% |
| !! | GTTTGGTTAGCTTACTGTCA+TGG | + | chr5.3:72535483-72535502 | None:intergenic | 40.0% |
| !! | TAAACCGAAAGTTGATGCCA+GGG | - | chr5.3:72535108-72535127 | MS.gene47702:CDS | 40.0% |
| !! | TCTGCTGATGATAATGGAGA+AGG | - | chr5.3:72533933-72533952 | MS.gene47702:CDS | 40.0% |
| !! | TGCCTGATTTTGGCATACAT+GGG | - | chr5.3:72536125-72536144 | MS.gene47702:intron | 40.0% |
| !! | TGTTCTTTGAAAAGCACCCT+AGG | - | chr5.3:72534448-72534467 | MS.gene47702:intron | 40.0% |
| !! | TTAAACCGAAAGTTGATGCC+AGG | - | chr5.3:72535107-72535126 | MS.gene47702:CDS | 40.0% |
| !! | TTTTGGTGCATTGTCCGATA+CGG | - | chr5.3:72537446-72537465 | MS.gene47702:CDS | 40.0% |
| !!! | CCTTGTTTTCCACATCAAAG+TGG | + | chr5.3:72537184-72537203 | None:intergenic | 40.0% |
| AAAAGCCATGCTGCAACAAC+TGG | + | chr5.3:72535660-72535679 | None:intergenic | 45.0% | |
| AAAGCCATGCTGCAACAACT+GGG | + | chr5.3:72535659-72535678 | None:intergenic | 45.0% | |
| AAATGACATCCGTTCCATGG+AGG | - | chr5.3:72534859-72534878 | MS.gene47702:CDS | 45.0% | |
| AACAACTGGGGCAAACATGA+AGG | + | chr5.3:72535646-72535665 | None:intergenic | 45.0% | |
| ACTAACACCTGATGGAATGC+TGG | + | chr5.3:72537335-72537354 | None:intergenic | 45.0% | |
| AGGACTCGTCTTGAAGTTGT+TGG | + | chr5.3:72537690-72537709 | None:intergenic | 45.0% | |
| AGGATGGTCATAGACCGAAA+CGG | + | chr5.3:72535399-72535418 | None:intergenic | 45.0% | |
| ATAGACCGAAACGGACAAAC+AGG | + | chr5.3:72535390-72535409 | None:intergenic | 45.0% | |
| CACCCATGTATGCCAAAATC+AGG | + | chr5.3:72536130-72536149 | None:intergenic | 45.0% | |
| CATTGTCTCCACACCTAAGA+TGG | + | chr5.3:72535939-72535958 | None:intergenic | 45.0% | |
| GCTCAATTTCCCTGAGAATG+AGG | + | chr5.3:72533817-72533836 | None:intergenic | 45.0% | |
| GGAGACAATGTATGCTGACA+TGG | - | chr5.3:72535949-72535968 | MS.gene47702:intron | 45.0% | |
| TAACCCCGGAGCTGATATTA+AGG | + | chr5.3:72534627-72534646 | None:intergenic | 45.0% | |
| TAATCTTGCTTCCGGTATCC+CGG | - | chr5.3:72537280-72537299 | MS.gene47702:intron | 45.0% | |
| TCACCTTAATATCAGCTCCG+GGG | - | chr5.3:72534621-72534640 | MS.gene47702:intron | 45.0% | |
| TCCTACAACAGCAGCAAAAG+TGG | + | chr5.3:72536330-72536349 | None:intergenic | 45.0% | |
| ! | AAACCACTGGCATTGAAGGA+TGG | - | chr5.3:72535772-72535791 | MS.gene47702:intron | 45.0% |
| ! | CTCAAAACCACTGGCATTGA+AGG | - | chr5.3:72535768-72535787 | MS.gene47702:intron | 45.0% |
| ! | CTGAAAATGAGACCGATTCC+TGG | + | chr5.3:72537260-72537279 | None:intergenic | 45.0% |
| ! | GACAGCGCCTAACACATTTT+AGG | + | chr5.3:72536602-72536621 | None:intergenic | 45.0% |
| ! | GCATGGCTTTTGTGTATCAG+TGG | - | chr5.3:72535669-72535688 | MS.gene47702:CDS | 45.0% |
| !! | AACAGTCCTTTCTGGAACCT+AGG | + | chr5.3:72534468-72534487 | None:intergenic | 45.0% |
| !! | ACAGTCCTTTCTGGAACCTA+GGG | + | chr5.3:72534467-72534486 | None:intergenic | 45.0% |
| !! | AGCTGTCACAATTGGCCTTA+GGG | - | chr5.3:72536502-72536521 | MS.gene47702:intron | 45.0% |
| !! | GATTTTGGCATACATGGGTG+AGG | - | chr5.3:72536130-72536149 | MS.gene47702:intron | 45.0% |
| !! | GTGCCTGATTTTGGCATACA+TGG | - | chr5.3:72536124-72536143 | MS.gene47702:intron | 45.0% |
| !! | TAGCTGTCACAATTGGCCTT+AGG | - | chr5.3:72536501-72536520 | MS.gene47702:intron | 45.0% |
| !! | TGCACAGCATTGGCTTATGA+TGG | + | chr5.3:72536381-72536400 | None:intergenic | 45.0% |
| !!! | CTTTTCTTGGTTTGCAGGGT+TGG | - | chr5.3:72536923-72536942 | MS.gene47702:CDS | 45.0% |
| AAGCACCCTAGGTTCCAGAA+AGG | - | chr5.3:72534459-72534478 | MS.gene47702:intron | 50.0% | |
| AAGCCATGCTGCAACAACTG+GGG | + | chr5.3:72535658-72535677 | None:intergenic | 50.0% | |
| ACACAGACCATGCCTAAGCA+TGG | + | chr5.3:72537236-72537255 | None:intergenic | 50.0% | |
| ACCGAAAATAGCCGGGATAC+CGG | + | chr5.3:72537294-72537313 | None:intergenic | 50.0% | |
| ATGGTCTGTGTCCCAGGAAT+CGG | - | chr5.3:72537245-72537264 | MS.gene47702:intron | 50.0% | |
| ATTGGGATCCATCCTCCTTC+AGG | + | chr5.3:72537098-72537117 | None:intergenic | 50.0% | |
| CAACCATCCTTCAATGCCAG+TGG | + | chr5.3:72535778-72535797 | None:intergenic | 50.0% | |
| CATGCCTAAGCATGGTCCTA+AGG | + | chr5.3:72537228-72537247 | None:intergenic | 50.0% | |
| CGGTACCTGTTTGTCCGTTT+CGG | - | chr5.3:72535382-72535401 | MS.gene47702:intron | 50.0% | |
| CTTAGGACCATGCTTAGGCA+TGG | - | chr5.3:72537226-72537245 | MS.gene47702:intron | 50.0% | |
| TCTGTCTGCAAAGTCCCTGA+AGG | - | chr5.3:72537080-72537099 | MS.gene47702:intron | 50.0% | |
| TGGTCCCTGGCATCAACTTT+CGG | + | chr5.3:72535115-72535134 | None:intergenic | 50.0% | |
| TTGGGATCCATCCTCCTTCA+GGG | + | chr5.3:72537097-72537116 | None:intergenic | 50.0% | |
| !! | TCCGGTATCCCGGCTATTTT+CGG | - | chr5.3:72537290-72537309 | MS.gene47702:intron | 50.0% |
| !!! | GCCACTTTTGCTGCTGTTGT+AGG | - | chr5.3:72536326-72536345 | MS.gene47702:intron | 50.0% |
| CGTGGCATATCAGCTCCATG+TGG | - | chr5.3:72534967-72534986 | MS.gene47702:intron | 55.0% | |
| GCAAAGTCCCTGAAGGAGGA+TGG | - | chr5.3:72537087-72537106 | MS.gene47702:intron | 55.0% | |
| GTCTGCAAAGTCCCTGAAGG+AGG | - | chr5.3:72537083-72537102 | MS.gene47702:intron | 55.0% | |
| TGAACATCAGCACGGCCACA+TGG | + | chr5.3:72534985-72535004 | None:intergenic | 55.0% | |
| TTAGGCATGGTCTGTGTCCC+AGG | - | chr5.3:72537239-72537258 | MS.gene47702:intron | 55.0% | |
| TTGCCCCAGTTGTTGCAGCA+TGG | - | chr5.3:72535652-72535671 | MS.gene47702:CDS | 55.0% | |
| !! | CATCAGCAGGATTGGTCCGA+AGG | - | chr5.3:72537412-72537431 | MS.gene47702:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 72533529 | 72537736 | 72533529 | ID=MS.gene47702 |
| chr5.3 | mRNA | 72533529 | 72537736 | 72533529 | ID=MS.gene47702.t1;Parent=MS.gene47702 |
| chr5.3 | exon | 72537692 | 72537736 | 72537692 | ID=MS.gene47702.t1.exon1;Parent=MS.gene47702.t1 |
| chr5.3 | CDS | 72537692 | 72537736 | 72537692 | ID=cds.MS.gene47702.t1;Parent=MS.gene47702.t1 |
| chr5.3 | exon | 72537311 | 72537554 | 72537311 | ID=MS.gene47702.t1.exon2;Parent=MS.gene47702.t1 |
| chr5.3 | CDS | 72537311 | 72537554 | 72537311 | ID=cds.MS.gene47702.t1;Parent=MS.gene47702.t1 |
| chr5.3 | exon | 72536713 | 72536961 | 72536713 | ID=MS.gene47702.t1.exon3;Parent=MS.gene47702.t1 |
| chr5.3 | CDS | 72536713 | 72536961 | 72536713 | ID=cds.MS.gene47702.t1;Parent=MS.gene47702.t1 |
| chr5.3 | exon | 72535778 | 72535828 | 72535778 | ID=MS.gene47702.t1.exon4;Parent=MS.gene47702.t1 |
| chr5.3 | CDS | 72535778 | 72535828 | 72535778 | ID=cds.MS.gene47702.t1;Parent=MS.gene47702.t1 |
| chr5.3 | exon | 72535437 | 72535697 | 72535437 | ID=MS.gene47702.t1.exon5;Parent=MS.gene47702.t1 |
| chr5.3 | CDS | 72535437 | 72535697 | 72535437 | ID=cds.MS.gene47702.t1;Parent=MS.gene47702.t1 |
| chr5.3 | exon | 72535268 | 72535320 | 72535268 | ID=MS.gene47702.t1.exon6;Parent=MS.gene47702.t1 |
| chr5.3 | CDS | 72535268 | 72535320 | 72535268 | ID=cds.MS.gene47702.t1;Parent=MS.gene47702.t1 |
| chr5.3 | exon | 72535053 | 72535167 | 72535053 | ID=MS.gene47702.t1.exon7;Parent=MS.gene47702.t1 |
| chr5.3 | CDS | 72535053 | 72535167 | 72535053 | ID=cds.MS.gene47702.t1;Parent=MS.gene47702.t1 |
| chr5.3 | exon | 72534714 | 72534968 | 72534714 | ID=MS.gene47702.t1.exon8;Parent=MS.gene47702.t1 |
| chr5.3 | CDS | 72534714 | 72534968 | 72534714 | ID=cds.MS.gene47702.t1;Parent=MS.gene47702.t1 |
| chr5.3 | exon | 72534290 | 72534325 | 72534290 | ID=MS.gene47702.t1.exon9;Parent=MS.gene47702.t1 |
| chr5.3 | CDS | 72534290 | 72534325 | 72534290 | ID=cds.MS.gene47702.t1;Parent=MS.gene47702.t1 |
| chr5.3 | exon | 72533529 | 72534187 | 72533529 | ID=MS.gene47702.t1.exon10;Parent=MS.gene47702.t1 |
| chr5.3 | CDS | 72533529 | 72534187 | 72533529 | ID=cds.MS.gene47702.t1;Parent=MS.gene47702.t1 |
| Gene Sequence |
| Protein sequence |
