AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47993

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47993.t1 MTR_5g090340 97.521 242 5 1 1 242 49 289 5.14e-175 483
MS.gene47993.t1 MTR_5g090340 97.521 242 5 1 1 242 46 286 7.98e-175 482
MS.gene47993.t1 MTR_3g449880 65.652 230 77 1 1 230 1 228 4.43e-112 322
MS.gene47993.t1 MTR_3g449880 68.023 172 53 1 59 230 37 206 9.45e-85 251
MS.gene47993.t1 MTR_8g099060 47.418 213 107 2 30 239 42 252 8.68e-69 213
MS.gene47993.t1 MTR_8g028450 44.286 210 111 2 34 239 53 260 3.94e-62 196
MS.gene47993.t1 MTR_1g099500 40.306 196 115 2 42 237 50 243 3.44e-54 175
MS.gene47993.t1 MTR_1g109630 36.181 199 115 4 43 239 10 198 2.92e-40 137
MS.gene47993.t1 MTR_3g062910 32.979 188 124 1 41 228 45 230 1.05e-33 122
MS.gene47993.t1 MTR_4g014700 33.163 196 129 1 41 236 5 198 1.53e-29 110
MS.gene47993.t1 MTR_5g090440 88.679 53 6 0 191 243 9 61 1.95e-27 100
MS.gene47993.t1 MTR_6g012460 31.111 180 122 1 60 239 14 191 6.66e-27 103
MS.gene47993.t1 MTR_5g018250 30.939 181 123 1 55 235 29 207 1.17e-23 95.5
MS.gene47993.t1 MTR_1g107445 33.511 188 123 1 50 237 9 194 1.48e-23 94.7
MS.gene47993.t1 MTR_5g018190 33.108 148 97 1 63 210 284 429 1.62e-18 84.3
MS.gene47993.t1 MTR_5g018080 33.566 143 93 1 59 201 15 155 1.32e-17 77.8
MS.gene47993.t1 MTR_6g012460 33.835 133 86 1 60 192 14 144 4.33e-17 77.8
MS.gene47993.t1 MTR_5g018110 33.333 144 94 1 62 205 344 485 3.38e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47993.t1 AT3G10260 54.321 243 105 3 1 240 1 240 7.26e-97 283
MS.gene47993.t1 AT3G10260 54.321 243 105 3 1 240 1 240 7.26e-97 283
MS.gene47993.t1 AT3G10260 54.321 243 105 3 1 240 21 260 1.27e-96 283
MS.gene47993.t1 AT2G46170 45.098 204 110 1 34 237 43 244 7.75e-66 205
MS.gene47993.t1 AT3G61560 44.118 204 112 1 34 237 43 244 2.07e-64 201
MS.gene47993.t1 AT3G61560 44.118 204 112 1 34 237 43 244 2.07e-64 201
MS.gene47993.t1 AT1G64090 40.758 211 119 2 33 239 38 246 1.33e-58 186
MS.gene47993.t1 AT4G23630 39.899 198 117 1 42 239 72 267 5.22e-58 186
MS.gene47993.t1 AT4G23630 39.899 198 117 1 42 239 72 267 5.22e-58 186
MS.gene47993.t1 AT4G11220 37.374 198 122 1 42 239 68 263 2.43e-57 184
MS.gene47993.t1 AT5G41600 41.089 202 113 3 42 239 51 250 8.70e-56 179
MS.gene47993.t1 AT1G64090 38.222 225 117 3 35 239 40 262 1.55e-54 176
MS.gene47993.t1 AT3G18260 38.191 199 121 1 41 239 21 217 5.64e-50 163
MS.gene47993.t1 AT4G01230 38.916 203 119 1 35 237 46 243 7.38e-50 164
MS.gene47993.t1 AT3G61560 45.570 158 84 1 34 191 43 198 1.27e-47 156
MS.gene47993.t1 AT4G01230 37.931 203 119 2 35 237 46 241 1.76e-46 155
MS.gene47993.t1 AT2G46170 41.912 136 77 1 34 169 43 176 1.05e-35 125
MS.gene47993.t1 AT3G10915 30.348 201 138 1 37 237 19 217 1.11e-34 124
MS.gene47993.t1 AT3G10915 29.808 208 144 1 29 236 36 241 1.57e-34 124
MS.gene47993.t1 AT3G10915 30.198 202 138 2 37 237 19 218 6.49e-33 119
MS.gene47993.t1 AT2G15280 33.158 190 125 1 47 236 2 189 1.35e-32 118
MS.gene47993.t1 AT1G68230 33.161 193 121 3 50 240 22 208 4.82e-28 106
MS.gene47993.t1 AT3G10915 27.232 224 138 3 37 237 19 240 1.89e-27 105
MS.gene47993.t1 AT3G19460 31.073 177 120 1 51 227 14 188 1.03e-26 102
MS.gene47993.t1 AT3G19460 31.073 177 120 1 51 227 14 188 1.03e-26 102
MS.gene47993.t1 AT3G19460 31.073 177 120 1 51 227 14 188 1.03e-26 102
MS.gene47993.t1 AT3G10915 28.415 183 129 1 54 236 4 184 1.11e-26 102
MS.gene47993.t1 AT3G10915 28.652 178 125 1 59 236 8 183 1.55e-26 102
MS.gene47993.t1 AT3G54120 28.708 209 142 3 36 243 1 203 7.28e-22 90.1
MS.gene47993.t1 AT3G19460 27.103 214 114 5 51 227 14 222 3.29e-20 86.3
MS.gene47993.t1 AT3G19460 27.103 214 114 5 51 227 14 222 3.29e-20 86.3
MS.gene47993.t1 AT1G68230 33.793 145 88 3 50 192 22 160 5.02e-17 76.3
MS.gene47993.t1 AT3G10915 31.200 125 84 1 42 166 24 146 8.89e-17 75.5
MS.gene47993.t1 AT2G23640 24.713 174 129 1 61 234 18 189 6.75e-15 71.6
MS.gene47993.t1 AT2G15280 23.684 190 104 2 47 236 2 150 1.20e-11 61.6

Find 61 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGGTTGTAGTATGCTTA+TGG 0.271495 5.2:-76620708 MS.gene47993:intron
TCATGTCTGTACAGTTTCTT+TGG 0.274156 5.2:-76621402 MS.gene47993:CDS
CTGAGGTTAACCGTGGTTTA+AGG 0.278401 5.2:-76621166 MS.gene47993:CDS
TATCCAAGCTTCTTTCCTTT+GGG 0.285834 5.2:+76620073 None:intergenic
TATAATTAAGCCATTCAAAA+AGG 0.291332 5.2:+76621461 None:intergenic
CAGTATAGGAAGGTGGATTC+TGG 0.314712 5.2:-76620112 MS.gene47993:CDS
CTATCCAAGCTTCTTTCCTT+TGG 0.317711 5.2:+76620072 None:intergenic
TATTAACAAAGAAATCTTTC+GGG 0.323201 5.2:+76621207 None:intergenic
CAGAATCCACCTTCCTATAC+TGG 0.327594 5.2:+76620113 None:intergenic
GTCCAAACAGTTTATTGAAC+TGG 0.330990 5.2:+76621693 None:intergenic
TAACCGCTGCAACAACTATA+TGG 0.340621 5.2:-76621486 MS.gene47993:CDS
ATATTAACAAAGAAATCTTT+CGG 0.374090 5.2:+76621206 None:intergenic
CTGGTGCTGTGATTGGGAAC+TGG 0.386885 5.2:-76620684 MS.gene47993:CDS
ATGCTTCCGGCGTGTTTAGC+AGG 0.400253 5.2:-76621375 MS.gene47993:intron
TCCCAGTTCAATAAACTGTT+TGG 0.402640 5.2:-76621695 MS.gene47993:CDS
TTATGGGCTGGTGCTGTGAT+TGG 0.407728 5.2:-76620691 MS.gene47993:CDS
TTTCTTTGGACAAATGCTTC+CGG 0.425537 5.2:-76621388 MS.gene47993:CDS
GCCATCAAAAGCTCCTCGTT+TGG 0.430625 5.2:-76621234 MS.gene47993:CDS
AGTTGTTGCAGCGGTTAAAA+CGG 0.447463 5.2:+76621492 None:intergenic
GCAGGTTGTAGTATGCTTAT+GGG 0.447620 5.2:-76620707 MS.gene47993:intron
TCATACCTTTCGTAGAGAAC+CGG 0.450625 5.2:+76620184 None:intergenic
TATGGGCTGGTGCTGTGATT+GGG 0.451379 5.2:-76620690 MS.gene47993:CDS
ATCCAAGCTTCTTTCCTTTG+GGG 0.455010 5.2:+76620074 None:intergenic
GAGCTAGGCATAGAAGTGAT+AGG 0.455942 5.2:+76621434 None:intergenic
CTTCAAAATGTTTCATGTGG+AGG 0.472512 5.2:-76621140 MS.gene47993:CDS
ATCCCCAAAGGAAAGAAGCT+TGG 0.496516 5.2:-76620076 MS.gene47993:CDS
ATCAGATGCAAAACCAGTAT+AGG 0.499744 5.2:-76620126 MS.gene47993:CDS
CTTGGCGAGAGGCAAAAGTC+TGG 0.502330 5.2:-76621755 MS.gene47993:CDS
TTTGAAGAAACCTTAAACCA+CGG 0.502721 5.2:+76621156 None:intergenic
AGTTTGCCTTCACTTCTACA+TGG 0.505250 5.2:+76621726 None:intergenic
TGTTGCTGCACATACACTCC+CGG 0.528499 5.2:-76620203 MS.gene47993:CDS
TCCAAACAGTTTATTGAACT+GGG 0.530900 5.2:+76621694 None:intergenic
GTTAATATTGCAACTGCGGT+TGG 0.530904 5.2:-76621191 MS.gene47993:CDS
GATTGATAACTTCGTGTACA+AGG 0.536766 5.2:-76620155 MS.gene47993:CDS
AACACCCTCGTGGAAACACT+TGG 0.537056 5.2:-76621773 MS.gene47993:CDS
TTTCTTCAAAATGTTTCATG+TGG 0.542392 5.2:-76621143 MS.gene47993:CDS
TTTCTTTCTGTAGTGACAGG+AGG 0.553917 5.2:-76621256 MS.gene47993:intron
CCACCTAAAATATGGTGCAC+AGG 0.562386 5.2:+76621662 None:intergenic
GTTGTAGTATGCTTATGGGC+TGG 0.564353 5.2:-76620703 MS.gene47993:CDS
CATACCTTTCGTAGAGAACC+GGG 0.571222 5.2:+76620185 None:intergenic
TAGCTGCTGATGTCATGTTG+TGG 0.573484 5.2:-76621537 MS.gene47993:CDS
TGCAACTGCGGTTGGTACTG+AGG 0.575677 5.2:-76621183 MS.gene47993:CDS
CTTTGTTAATATTGCAACTG+CGG 0.576367 5.2:-76621195 MS.gene47993:CDS
TTCATTCCATGTAGAAGTGA+AGG 0.576828 5.2:-76621732 MS.gene47993:CDS
CACTCCCGGTTCTCTACGAA+AGG 0.578629 5.2:-76620189 MS.gene47993:CDS
CTGCTGATGTCATGTTGTGG+AGG 0.578920 5.2:-76621534 MS.gene47993:CDS
CTCGCCAAGTGTTTCCACGA+GGG 0.597506 5.2:+76621769 None:intergenic
TGCTGATGTCATGTTGTGGA+GGG 0.606274 5.2:-76621533 MS.gene47993:CDS
ACATGACAAGAACAAGAGCT+AGG 0.612406 5.2:+76621419 None:intergenic
GATGCAAAACCAGTATAGGA+AGG 0.625408 5.2:-76620122 MS.gene47993:CDS
GCAAAACCAGTATAGGAAGG+TGG 0.628367 5.2:-76620119 MS.gene47993:CDS
GAGCCATATAGTTGTTGCAG+CGG 0.636566 5.2:+76621483 None:intergenic
TCGTGGAAACACTTGGCGAG+AGG 0.645330 5.2:-76621766 MS.gene47993:CDS
TTGCTTAGCAAAATCCCCAA+AGG 0.645417 5.2:-76620088 MS.gene47993:CDS
AAAGCTTCTGAACACCCTCG+TGG 0.647335 5.2:-76621783 MS.gene47993:CDS
GTTGGTACTGAGGTTAACCG+TGG 0.658377 5.2:-76621173 MS.gene47993:CDS
GAATAACCTGCTAAACACGC+CGG 0.674294 5.2:+76621369 None:intergenic
TCTCGCCAAGTGTTTCCACG+AGG 0.690672 5.2:+76621768 None:intergenic
AAACAGTTTATTGAACTGGG+AGG 0.721336 5.2:+76621697 None:intergenic
TCTTTCGGGAGAACCAAACG+AGG 0.723179 5.2:+76621221 None:intergenic
GAGGGACAAGAAGATCTCTG+CGG 0.781257 5.2:-76621515 MS.gene47993:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTTAGATAAAAATAAAAT+AGG + chr5.2:76620567-76620586 None:intergenic 10.0%
!!! TTTATTTTTATCTAAATGTA+CGG - chr5.2:76620569-76620588 MS.gene47993:intron 10.0%
!! AACACATGAATAAAAAAAAT+TGG + chr5.2:76621053-76621072 None:intergenic 15.0%
!! ATATTAACAAAGAAATCTTT+CGG + chr5.2:76620675-76620694 None:intergenic 15.0%
!!! TATGATTTTATATTTAGAGA+CGG - chr5.2:76621081-76621100 MS.gene47993:intron 15.0%
!!! TTTTTTTATTCATGTGTTTT+AGG - chr5.2:76621055-76621074 MS.gene47993:intron 15.0%
!! CAACATAATTAGAGATATAA+TGG + chr5.2:76620954-76620973 None:intergenic 20.0%
!! GATTATAAATGACAAAACAA+AGG + chr5.2:76620811-76620830 None:intergenic 20.0%
!! TATAATTAAGCCATTCAAAA+AGG + chr5.2:76620420-76620439 None:intergenic 20.0%
!! TATTAACAAAGAAATCTTTC+GGG + chr5.2:76620674-76620693 None:intergenic 20.0%
!!! ATGTAAGTTGAAAATTTGAA+AGG + chr5.2:76620917-76620936 None:intergenic 20.0%
!!! GTATGTTTTAAGCATAAATA+TGG + chr5.2:76620833-76620852 None:intergenic 20.0%
!!! GTTAAAACTTTGTTATGTTA+CGG - chr5.2:76621593-76621612 MS.gene47993:intron 20.0%
!!! TACTTAGGGATAATATTTTT+AGG + chr5.2:76621351-76621370 None:intergenic 20.0%
!!! TGTAAGTTGAAAATTTGAAA+GGG + chr5.2:76620916-76620935 None:intergenic 20.0%
!!! TTTCATTGTCCTTTTTTAAA+AGG - chr5.2:76620889-76620908 MS.gene47993:intron 20.0%
! ACACATTGTATCAACAAAAA+AGG + chr5.2:76621263-76621282 None:intergenic 25.0%
! ACTTATTAGAGAAAACATCA+TGG + chr5.2:76621289-76621308 None:intergenic 25.0%
! CTGTTGAAATAGTATTTCAT+CGG - chr5.2:76621386-76621405 MS.gene47993:CDS 25.0%
! TCCTGTAAAATCTATCATAT+TGG - chr5.2:76620274-76620293 MS.gene47993:intron 25.0%
! TTCAACTATTCACTTACTTA+GGG + chr5.2:76621365-76621384 None:intergenic 25.0%
! TTGAAAAACAGAAACATTGA+CGG - chr5.2:76621122-76621141 MS.gene47993:CDS 25.0%
! TTTCAACTATTCACTTACTT+AGG + chr5.2:76621366-76621385 None:intergenic 25.0%
! TTTCTTCAAAATGTTTCATG+TGG - chr5.2:76620735-76620754 MS.gene47993:intron 25.0%
!! GTAAGTTGAAAATTTGAAAG+GGG + chr5.2:76620915-76620934 None:intergenic 25.0%
!! TGATGTTTTCTCTAATAAGT+TGG - chr5.2:76621289-76621308 MS.gene47993:intron 25.0%
!! TTTTTGTTGATACAATGTGT+TGG - chr5.2:76621263-76621282 MS.gene47993:intron 25.0%
!!! CTTTGTTTTGTTATGTCTTA+AGG - chr5.2:76621649-76621668 MS.gene47993:intron 25.0%
!!! TTTTTTACTGTCGTGTATAT+CGG - chr5.2:76621223-76621242 MS.gene47993:CDS 25.0%
CAGACAAAAGAAGAAATTCA+AGG + chr5.2:76620541-76620560 None:intergenic 30.0%
CATTGTATCAACAAAAAAGG+AGG + chr5.2:76621260-76621279 None:intergenic 30.0%
CTTTGTTAATATTGCAACTG+CGG - chr5.2:76620683-76620702 MS.gene47993:CDS 30.0%
GACAATGAAAAATCTCAAGA+GGG + chr5.2:76620879-76620898 None:intergenic 30.0%
TCAAGAATTCTCTCTTTGTT+TGG + chr5.2:76621432-76621451 None:intergenic 30.0%
TCCAAACAGTTTATTGAACT+GGG + chr5.2:76620187-76620206 None:intergenic 30.0%
TTTGAAGAAACCTTAAACCA+CGG + chr5.2:76620725-76620744 None:intergenic 30.0%
! ATTTTCCACCACCTAAAATA+TGG + chr5.2:76620227-76620246 None:intergenic 30.0%
! GATTTTATATTTAGAGACGG+AGG - chr5.2:76621084-76621103 MS.gene47993:intron 30.0%
! GCCAATATGATAGATTTTAC+AGG + chr5.2:76620278-76620297 None:intergenic 30.0%
AAACAGTTTATTGAACTGGG+AGG + chr5.2:76620184-76620203 None:intergenic 35.0%
AACAGCAAACTCGGTTAATT+GGG + chr5.2:76621498-76621517 None:intergenic 35.0%
ATCAGATGCAAAACCAGTAT+AGG - chr5.2:76621752-76621771 MS.gene47993:CDS 35.0%
ATCATGCTTAAAACATCTGC+AGG - chr5.2:76621153-76621172 MS.gene47993:CDS 35.0%
CTTCAAAATGTTTCATGTGG+AGG - chr5.2:76620738-76620757 MS.gene47993:intron 35.0%
GGACAATGAAAAATCTCAAG+AGG + chr5.2:76620880-76620899 None:intergenic 35.0%
GTCCAAACAGTTTATTGAAC+TGG + chr5.2:76620188-76620207 None:intergenic 35.0%
TAACAGCAAACTCGGTTAAT+TGG + chr5.2:76621499-76621518 None:intergenic 35.0%
TATCCAAGCTTCTTTCCTTT+GGG + chr5.2:76621808-76621827 None:intergenic 35.0%
TCATGTCTGTACAGTTTCTT+TGG - chr5.2:76620476-76620495 MS.gene47993:intron 35.0%
TCCCAGTTCAATAAACTGTT+TGG - chr5.2:76620183-76620202 MS.gene47993:CDS 35.0%
TTACCACGAAACACTTAACA+AGG + chr5.2:76621561-76621580 None:intergenic 35.0%
TTCATTCCATGTAGAAGTGA+AGG - chr5.2:76620146-76620165 MS.gene47993:CDS 35.0%
TTTATATTTAGAGACGGAGG+TGG - chr5.2:76621087-76621106 MS.gene47993:intron 35.0%
TTTCTTTGGACAAATGCTTC+CGG - chr5.2:76620490-76620509 MS.gene47993:intron 35.0%
! AAACCTGTGCACCATATTTT+AGG - chr5.2:76620213-76620232 MS.gene47993:intron 35.0%
! CTATATGGCTCCTTTTTGAA+TGG - chr5.2:76620407-76620426 MS.gene47993:intron 35.0%
! GATTGATAACTTCGTGTACA+AGG - chr5.2:76621723-76621742 MS.gene47993:CDS 35.0%
! TTGTTTCTTTCTGTAGTGAC+AGG - chr5.2:76620619-76620638 MS.gene47993:intron 35.0%
!! TGAAAGGGGCCTTTTAAAAA+AGG + chr5.2:76620901-76620920 None:intergenic 35.0%
ACATGACAAGAACAAGAGCT+AGG + chr5.2:76620462-76620481 None:intergenic 40.0%
AGTTGTTGCAGCGGTTAAAA+CGG + chr5.2:76620389-76620408 None:intergenic 40.0%
AGTTTGCCTTCACTTCTACA+TGG + chr5.2:76620155-76620174 None:intergenic 40.0%
ATCCAAGCTTCTTTCCTTTG+GGG + chr5.2:76621807-76621826 None:intergenic 40.0%
CTATCCAAGCTTCTTTCCTT+TGG + chr5.2:76621809-76621828 None:intergenic 40.0%
CTCAAGAGGGTCCTATATTT+GGG + chr5.2:76620866-76620885 None:intergenic 40.0%
GATGCAAAACCAGTATAGGA+AGG - chr5.2:76621756-76621775 MS.gene47993:CDS 40.0%
GCAGGTTGTAGTATGCTTAT+GGG - chr5.2:76621171-76621190 MS.gene47993:CDS 40.0%
GTTAATATTGCAACTGCGGT+TGG - chr5.2:76620687-76620706 MS.gene47993:CDS 40.0%
TAACCGCTGCAACAACTATA+TGG - chr5.2:76620392-76620411 MS.gene47993:intron 40.0%
TCAAGAGGGTCCTATATTTG+GGG + chr5.2:76620865-76620884 None:intergenic 40.0%
TCACCTTGTTAAGTGTTTCG+TGG - chr5.2:76621555-76621574 MS.gene47993:intron 40.0%
TCATACCTTTCGTAGAGAAC+CGG + chr5.2:76621697-76621716 None:intergenic 40.0%
TCTCAAGAGGGTCCTATATT+TGG + chr5.2:76620867-76620886 None:intergenic 40.0%
TGCAGGTTGTAGTATGCTTA+TGG - chr5.2:76621170-76621189 MS.gene47993:CDS 40.0%
TTGCTTAGCAAAATCCCCAA+AGG - chr5.2:76621790-76621809 MS.gene47993:CDS 40.0%
TTTCTTTCTGTAGTGACAGG+AGG - chr5.2:76620622-76620641 MS.gene47993:intron 40.0%
! TGTTCTGCTACTTGCAATGA+TGG - chr5.2:76620979-76620998 MS.gene47993:intron 40.0%
!! AACCGAGTTTGCTGTTATCT+CGG - chr5.2:76621502-76621521 MS.gene47993:CDS 40.0%
ATCCCCAAAGGAAAGAAGCT+TGG - chr5.2:76621802-76621821 MS.gene47993:CDS 45.0%
CAAGAGGGTCCTATATTTGG+GGG + chr5.2:76620864-76620883 None:intergenic 45.0%
CACCGAGATAACAGCAAACT+CGG + chr5.2:76621507-76621526 None:intergenic 45.0%
CAGAATCCACCTTCCTATAC+TGG + chr5.2:76621768-76621787 None:intergenic 45.0%
CATACCTTTCGTAGAGAACC+GGG + chr5.2:76621696-76621715 None:intergenic 45.0%
CCACCTAAAATATGGTGCAC+AGG + chr5.2:76620219-76620238 None:intergenic 45.0%
CTGAGGTTAACCGTGGTTTA+AGG - chr5.2:76620712-76620731 MS.gene47993:intron 45.0%
GAATAACCTGCTAAACACGC+CGG + chr5.2:76620512-76620531 None:intergenic 45.0%
GAGCCATATAGTTGTTGCAG+CGG + chr5.2:76620398-76620417 None:intergenic 45.0%
GAGCTAGGCATAGAAGTGAT+AGG + chr5.2:76620447-76620466 None:intergenic 45.0%
GCAAAACCAGTATAGGAAGG+TGG - chr5.2:76621759-76621778 MS.gene47993:CDS 45.0%
GTTGTAGTATGCTTATGGGC+TGG - chr5.2:76621175-76621194 MS.gene47993:CDS 45.0%
TAGCTGCTGATGTCATGTTG+TGG - chr5.2:76620341-76620360 MS.gene47993:intron 45.0%
TGCTGATGTCATGTTGTGGA+GGG - chr5.2:76620345-76620364 MS.gene47993:intron 45.0%
! ACCAAACGAGGAGCTTTTGA+TGG + chr5.2:76620648-76620667 None:intergenic 45.0%
! CAGTATAGGAAGGTGGATTC+TGG - chr5.2:76621766-76621785 MS.gene47993:CDS 45.0%
! GGTGTTCAGAAGCTTTTCAG+CGG + chr5.2:76620091-76620110 None:intergenic 45.0%
!! CCTGTGCACCATATTTTAGG+TGG - chr5.2:76620216-76620235 MS.gene47993:intron 45.0%
!! GTGCACCATATTTTAGGTGG+TGG - chr5.2:76620219-76620238 MS.gene47993:intron 45.0%
!! TTTGCTGTTATCTCGGTGTG+TGG - chr5.2:76621509-76621528 MS.gene47993:CDS 45.0%
AAAGCTTCTGAACACCCTCG+TGG - chr5.2:76620095-76620114 MS.gene47993:CDS 50.0%
AACACCCTCGTGGAAACACT+TGG - chr5.2:76620105-76620124 MS.gene47993:CDS 50.0%
CTGCTGATGTCATGTTGTGG+AGG - chr5.2:76620344-76620363 MS.gene47993:intron 50.0%
GAGGGACAAGAAGATCTCTG+CGG - chr5.2:76620363-76620382 MS.gene47993:intron 50.0%
GCCATCAAAAGCTCCTCGTT+TGG - chr5.2:76620644-76620663 MS.gene47993:intron 50.0%
TCTTTCGGGAGAACCAAACG+AGG + chr5.2:76620660-76620679 None:intergenic 50.0%
TGTTGCTGCACATACACTCC+CGG - chr5.2:76621675-76621694 MS.gene47993:CDS 50.0%
! GTTGGTACTGAGGTTAACCG+TGG - chr5.2:76620705-76620724 MS.gene47993:CDS 50.0%
!! TATGGGCTGGTGCTGTGATT+GGG - chr5.2:76621188-76621207 MS.gene47993:CDS 50.0%
!! TTATGGGCTGGTGCTGTGAT+TGG - chr5.2:76621187-76621206 MS.gene47993:CDS 50.0%
ATGCTTCCGGCGTGTTTAGC+AGG - chr5.2:76620503-76620522 MS.gene47993:intron 55.0%
CACTCCCGGTTCTCTACGAA+AGG - chr5.2:76621689-76621708 MS.gene47993:CDS 55.0%
CTACCTCCGCCCCCAAATAT+AGG - chr5.2:76620852-76620871 MS.gene47993:intron 55.0%
CTCGCCAAGTGTTTCCACGA+GGG + chr5.2:76620112-76620131 None:intergenic 55.0%
CTTGGCGAGAGGCAAAAGTC+TGG - chr5.2:76620123-76620142 MS.gene47993:CDS 55.0%
GAGGGTCCTATATTTGGGGG+CGG + chr5.2:76620861-76620880 None:intergenic 55.0%
TCGTGGAAACACTTGGCGAG+AGG - chr5.2:76620112-76620131 MS.gene47993:CDS 55.0%
TCTCGCCAAGTGTTTCCACG+AGG + chr5.2:76620113-76620132 None:intergenic 55.0%
! TGCAACTGCGGTTGGTACTG+AGG - chr5.2:76620695-76620714 MS.gene47993:CDS 55.0%
!! CTGGTGCTGTGATTGGGAAC+TGG - chr5.2:76621194-76621213 MS.gene47993:CDS 55.0%
GGTCCTATATTTGGGGGCGG+AGG + chr5.2:76620858-76620877 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 76620072 76621828 76620072 ID=MS.gene47993
chr5.2 mRNA 76620072 76621828 76620072 ID=MS.gene47993.t1;Parent=MS.gene47993
chr5.2 exon 76621654 76621828 76621654 ID=MS.gene47993.t1.exon1;Parent=MS.gene47993.t1
chr5.2 CDS 76621654 76621828 76621654 ID=cds.MS.gene47993.t1;Parent=MS.gene47993.t1
chr5.2 exon 76621376 76621556 76621376 ID=MS.gene47993.t1.exon2;Parent=MS.gene47993.t1
chr5.2 CDS 76621376 76621556 76621376 ID=cds.MS.gene47993.t1;Parent=MS.gene47993.t1
chr5.2 exon 76621118 76621265 76621118 ID=MS.gene47993.t1.exon3;Parent=MS.gene47993.t1
chr5.2 CDS 76621118 76621265 76621118 ID=cds.MS.gene47993.t1;Parent=MS.gene47993.t1
chr5.2 exon 76620656 76620725 76620656 ID=MS.gene47993.t1.exon4;Parent=MS.gene47993.t1
chr5.2 CDS 76620656 76620725 76620656 ID=cds.MS.gene47993.t1;Parent=MS.gene47993.t1
chr5.2 exon 76620072 76620229 76620072 ID=MS.gene47993.t1.exon5;Parent=MS.gene47993.t1
chr5.2 CDS 76620072 76620229 76620072 ID=cds.MS.gene47993.t1;Parent=MS.gene47993.t1
Gene Sequence

>MS.gene47993

ATGTCTGAGAATTTTACCGCTGAAAAGCTTCTGAACACCCTCGTGGAAACACTTGGCGAGAGGCAAAAGTCTGGTTCATTCCATGTAGAAGTGAAGGCAAACTCAATGACCTCCCAGTTCAATAAACTGTTTGGACGCGAGAAACCTGTGCACCATATTTTAGGTGGTGGAAAATGTATGTCAATGACAATTCTAGTGAATTTCCTGTAAAATCTATCATATTGGCTTCAGCTTTTAAATCTGTTTTCTTTTTTACACTTTGAATGACTTAGCTGCTGATGTCATGTTGTGGAGGGACAAGAAGATCTCTGCGGCCGTTTTAACCGCTGCAACAACTATATGGCTCCTTTTTGAATGGCTTAATTATAATTTCCTATCACTTCTATGCCTAGCTCTTGTTCTTGTCATGTCTGTACAGTTTCTTTGGACAAATGCTTCCGGCGTGTTTAGCAGGTTATTCAATCATCCTTGAATTTCTTCTTTTGTCTGTTGCCTATTTTATTTTTATCTAAATGTACGGTACTACTTTACAGCTTTAATAATGTTTTTGTTTCTTTCTGTAGTGACAGGAGGCCATCAAAAGCTCCTCGTTTGGTTCTCCCGAAAGATTTCTTTGTTAATATTGCAACTGCGGTTGGTACTGAGGTTAACCGTGGTTTAAGGTTTCTTCAAAATGTTTCATGTGGAGGAAACTTGAAGCAATTTGTTATTGTATGTTTACTCTGATGTTTTCTTGCCTTTGTTTTGTCATTTATAATCCATATTTATGCTTAAAACATACTACCTCCGCCCCCAAATATAGGACCCTCTTGAGATTTTTCATTGTCCTTTTTTAAAAGGCCCCTTTCAAATTTTCAACTTACATTAATTATTTCTATGCCATTATATCTCTAATTATGTTGTATCTTGTTCTGCTACTTGCAATGATGGAAACATAAAGTAAAACAATTTCAATTGTCAACAAATTTAATACTTCTACCAATTTTTTTTATTCATGTGTTTTAGGCAATATGATTTTATATTTAGAGACGGAGGTGGTAGTTTTTTAAGTTGAAAAACAGAAACATTGACGGAATTTGTGATCATGCTTAAAACATCTGCAGGTTGTAGTATGCTTATGGGCTGGTGCTGTGATTGGGAACTGGTTCAATTTTTTTACTGTCGTGTATATCGGTGAGAGAACTTCCTCCTTTTTTGTTGATACAATGTGTTGGCCATGATGTTTTCTCTAATAAGTTGGTTCAAGTTTGCAAAGTATATTTCACACTTCAATTATCCTAAAAATATTATCCCTAAGTAAGTGAATAGTTGAAACTGTTGAAATAGTATTTCATCGGTATGAAAAATGAAAGAAAAACCAAACAAAGAGAGAATTCTTGAGAGTAAGTGCTTGAAGAATGTATCAGAATTGTGAAATTAGTAACCCAATTAACCGAGTTTGCTGTTATCTCGGTGTGTGGTATAACACTATAACATAATACGCTCACCTTGTTAAGTGTTTCGTGGTAATACAGCTTGATTGTTAAAACTTTGTTATGTTACGGTCGATGTTTTTTGTTCATACTTGATCGCTAAAACTTTGTTTTGTTATGTCTTAAGGTTTTGTTGCTGCACATACACTCCCGGTTCTCTACGAAAGGTATGACGATCAGATTGATAACTTCGTGTACAAGGTACTTGATCAGATGCAAAACCAGTATAGGAAGGTGGATTCTGGTTTGCTTAGCAAAATCCCCAAAGGAAAGAAGCTTGGATAG
Protein sequence

>MS.gene47993.t1

MSENFTAEKLLNTLVETLGERQKSGSFHVEVKANSMTSQFNKLFGREKPVHHILGGGKSADVMLWRDKKISAAVLTAATTIWLLFEWLNYNFLSLLCLALVLVMSVQFLWTNASGVFSSDRRPSKAPRLVLPKDFFVNIATAVGTEVNRGLRFLQNVSCGGNLKQFVIVVVCLWAGAVIGNWFNFFTVVYIGFVAAHTLPVLYERYDDQIDNFVYKVLDQMQNQYRKVDSGLLSKIPKGKKLG