Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48363.t1 | KEH31824.1 | 97.5 | 281 | 6 | 1 | 1 | 280 | 1 | 281 | 1.10E-164 | 589.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48363.t1 | A0A072UPR7 | 97.5 | 281 | 6 | 1 | 1 | 280 | 1 | 281 | 7.7e-165 | 589.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050707 | MS.gene48363 | 0.836004 | 1.21E-56 | -1.69E-46 |
| MS.gene052308 | MS.gene48363 | 0.818647 | 1.76E-52 | -1.69E-46 |
| MS.gene058128 | MS.gene48363 | 0.809425 | 1.90E-50 | -1.69E-46 |
| MS.gene058853 | MS.gene48363 | 0.834855 | 2.35E-56 | -1.69E-46 |
| MS.gene060825 | MS.gene48363 | 0.952821 | 1.06E-110 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48363.t1 | MTR_4g105550 | 97.509 | 281 | 6 | 1 | 1 | 280 | 1 | 281 | 0.0 | 568 |
| MS.gene48363.t1 | MTR_4g123700 | 37.398 | 246 | 136 | 8 | 31 | 274 | 34 | 263 | 7.22e-46 | 158 |
| MS.gene48363.t1 | MTR_5g037310 | 28.369 | 282 | 172 | 10 | 14 | 282 | 10 | 274 | 2.24e-25 | 103 |
| MS.gene48363.t1 | MTR_5g037310 | 28.369 | 282 | 172 | 10 | 14 | 282 | 10 | 274 | 2.28e-25 | 103 |
| MS.gene48363.t1 | MTR_8g090055 | 26.797 | 306 | 184 | 11 | 11 | 304 | 10 | 287 | 1.77e-23 | 98.6 |
| MS.gene48363.t1 | MTR_2g023970 | 27.018 | 285 | 174 | 11 | 28 | 299 | 21 | 284 | 1.76e-19 | 87.8 |
| MS.gene48363.t1 | MTR_4g132450 | 25.448 | 279 | 167 | 10 | 22 | 285 | 29 | 281 | 1.13e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48363.t1 | AT5G50290 | 66.667 | 270 | 85 | 2 | 12 | 278 | 3 | 270 | 1.33e-139 | 397 |
| MS.gene48363.t1 | AT3G17350 | 31.452 | 248 | 158 | 6 | 30 | 274 | 30 | 268 | 1.36e-37 | 135 |
| MS.gene48363.t1 | AT3G17350 | 31.452 | 248 | 158 | 6 | 30 | 274 | 30 | 268 | 1.42e-37 | 136 |
| MS.gene48363.t1 | AT1G10380 | 30.588 | 255 | 153 | 9 | 31 | 274 | 29 | 270 | 3.75e-25 | 103 |
| MS.gene48363.t1 | AT1G10380 | 30.350 | 257 | 155 | 9 | 29 | 274 | 27 | 270 | 5.70e-25 | 102 |
| MS.gene48363.t1 | AT1G11915 | 26.846 | 298 | 187 | 9 | 1 | 284 | 1 | 281 | 8.86e-23 | 97.1 |
Find 93 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCATGGCAAATGTTTATC+AGG | 0.193615 | 8.3:-17272875 | None:intergenic |
| TTAAATTTATCTTTCAATTA+AGG | 0.197829 | 8.3:-17273816 | None:intergenic |
| TTGCCATGCAGAAATGTTTC+TGG | 0.200621 | 8.3:+17272887 | MS.gene48363:CDS |
| TGTATCTTATGAAGCTATTA+AGG | 0.212607 | 8.3:+17273015 | MS.gene48363:CDS |
| TCGGGTGTTGGGTTCATGTA+TGG | 0.280996 | 8.3:-17272797 | None:intergenic |
| CCTCGTTCACCTTTGTTTCA+AGG | 0.290171 | 8.3:+17272848 | MS.gene48363:CDS |
| TCTTGCTCCCGATGATAATA+AGG | 0.303286 | 8.3:-17273630 | None:intergenic |
| CTGGGTGGCCACATCCGTTT+TGG | 0.303374 | 8.3:-17272586 | None:intergenic |
| GGACCTAGTGATTGGACTTA+TGG | 0.306537 | 8.3:+17273109 | MS.gene48363:CDS |
| ATGGAAGGTAGTGAAGAATT+TGG | 0.310791 | 8.3:-17272453 | None:intergenic |
| TTATCTTTCAATTAAGGAAT+AGG | 0.326932 | 8.3:-17273810 | None:intergenic |
| TTATAGTGTTGCACCTTTGA+AGG | 0.365560 | 8.3:+17273081 | MS.gene48363:CDS |
| GGACTTATGGGATCCGTGTT+AGG | 0.370153 | 8.3:+17273122 | MS.gene48363:CDS |
| CGGGTGTTGGGTTCATGTAT+GGG | 0.379624 | 8.3:-17272796 | None:intergenic |
| TGTGGTGCTTGTCAGGCTAC+TGG | 0.380371 | 8.3:+17273172 | MS.gene48363:CDS |
| GACCGCGAAACCGTTGCCTT+TGG | 0.382428 | 8.3:-17272759 | None:intergenic |
| GGTATGCGTAATCTATTTGT+AGG | 0.399971 | 8.3:-17272679 | None:intergenic |
| AGTTGTGGGTATGGTTCTGA+TGG | 0.412932 | 8.3:+17273199 | MS.gene48363:CDS |
| GACCTAGTGATTGGACTTAT+GGG | 0.418628 | 8.3:+17273110 | MS.gene48363:CDS |
| GTTGCACCTTTGAAGGTTGA+TGG | 0.422946 | 8.3:+17273088 | MS.gene48363:CDS |
| ATGAGGTTGAAAATGTTTGC+AGG | 0.430766 | 8.3:+17273659 | MS.gene48363:CDS |
| AACCGTTGCCTTTGGTTCCT+AGG | 0.434888 | 8.3:-17272751 | None:intergenic |
| AAGAGTAGGTCACGGAAACC+TGG | 0.435538 | 8.3:-17272605 | None:intergenic |
| TGAAAACGTTGTCGGGTGTT+GGG | 0.444054 | 8.3:-17272808 | None:intergenic |
| ATGAAAACGTTGTCGGGTGT+TGG | 0.445293 | 8.3:-17272809 | None:intergenic |
| ACTGGTGGTAGTTGTGGGTA+TGG | 0.446197 | 8.3:+17273190 | MS.gene48363:CDS |
| CGTGTTAGGTATTCTGTTCA+AGG | 0.451485 | 8.3:+17273136 | MS.gene48363:CDS |
| GGTATGGTTCTGATGGGATT+AGG | 0.452697 | 8.3:+17273206 | MS.gene48363:CDS |
| GTATCTTATGAAGCTATTAA+GGG | 0.454558 | 8.3:+17273016 | MS.gene48363:CDS |
| TGCAGTGGCCTTATTATCAT+CGG | 0.468684 | 8.3:+17273622 | MS.gene48363:intron |
| AGGCTACTGGTGGTAGTTGT+GGG | 0.472568 | 8.3:+17273185 | MS.gene48363:CDS |
| CAGGCTACTGGTGGTAGTTG+TGG | 0.481186 | 8.3:+17273184 | MS.gene48363:CDS |
| CTCATGTTCCACGTAACCTC+AGG | 0.481711 | 8.3:+17272644 | MS.gene48363:CDS |
| GCAGTGGCCTTATTATCATC+GGG | 0.491551 | 8.3:+17273623 | MS.gene48363:intron |
| ACTTCAAATTGTGACTCAGC+AGG | 0.494437 | 8.3:+17273259 | MS.gene48363:CDS |
| GTTGTGGGTATGGTTCTGAT+GGG | 0.495945 | 8.3:+17273200 | MS.gene48363:CDS |
| AATGAGCATGAAAACGTTGT+CGG | 0.501170 | 8.3:-17272816 | None:intergenic |
| ATGAGCATGAAAACGTTGTC+GGG | 0.504088 | 8.3:-17272815 | None:intergenic |
| ATGCAGAAATGTTTCTGGTA+TGG | 0.510318 | 8.3:+17272892 | MS.gene48363:CDS |
| ATTACCAGAGCTCATTCTCC+TGG | 0.510427 | 8.3:-17273377 | None:intergenic |
| AACCAAAGGCAACGGTTTCG+CGG | 0.517363 | 8.3:+17272757 | MS.gene48363:CDS |
| TACCCATTTGCCCTCCAAAA+CGG | 0.517444 | 8.3:+17272572 | MS.gene48363:CDS |
| TTGTCCTGCTTGGAATATGA+TGG | 0.524635 | 8.3:+17272934 | MS.gene48363:CDS |
| AGTACTATGATTGTCCTGCT+TGG | 0.525763 | 8.3:+17272924 | MS.gene48363:CDS |
| ACGTGCGAAACACTAGTCCT+AGG | 0.526750 | 8.3:+17272734 | MS.gene48363:CDS |
| ATAATATAATGATTAGATGA+TGG | 0.530823 | 8.3:-17272472 | None:intergenic |
| CGGGAGCAAGAAGGCCTATG+AGG | 0.531175 | 8.3:+17273642 | MS.gene48363:CDS |
| GTGTTGTTAGAACAACTTGA+AGG | 0.536835 | 8.3:-17272515 | None:intergenic |
| CGTTGTTTATGCAGAAGAGT+AGG | 0.539097 | 8.3:-17272619 | None:intergenic |
| TGCAGAAATGTTTCTGGTAT+GGG | 0.539299 | 8.3:+17272893 | MS.gene48363:CDS |
| CTAAGTAAGCTTGAGTGTGA+AGG | 0.541978 | 8.3:+17273046 | MS.gene48363:CDS |
| TCAGGGAAGCCTTGAAACAA+AGG | 0.553085 | 8.3:-17272857 | None:intergenic |
| TTTGCCCTCCAAAACGGATG+TGG | 0.555787 | 8.3:+17272578 | MS.gene48363:CDS |
| AGGTTGATGGACCTAGTGAT+TGG | 0.555804 | 8.3:+17273101 | MS.gene48363:CDS |
| CTAGGTCCATCAACCTTCAA+AGG | 0.558381 | 8.3:-17273094 | None:intergenic |
| TAAGTAAGCTTGAGTGTGAA+GGG | 0.560178 | 8.3:+17273047 | MS.gene48363:CDS |
| GTCAGTGTGTCTTAATAACC+AGG | 0.560944 | 8.3:+17273359 | MS.gene48363:intron |
| TGGCCCATCATATTCCAAGC+AGG | 0.569795 | 8.3:-17272938 | None:intergenic |
| ACGGTTTCGCGGTCGAACCG+TGG | 0.573603 | 8.3:+17272768 | MS.gene48363:CDS |
| TGCATGGCAAATGTTTATCA+GGG | 0.573889 | 8.3:-17272874 | None:intergenic |
| ATAACCAGGAGAATGAGCTC+TGG | 0.579526 | 8.3:+17273373 | MS.gene48363:CDS |
| GGGTGTTGGGTTCATGTATG+GGG | 0.583489 | 8.3:-17272795 | None:intergenic |
| TATCTTATGAAGCTATTAAG+GGG | 0.587092 | 8.3:+17273017 | MS.gene48363:CDS |
| TATAATGATTAGATGATGGA+AGG | 0.588486 | 8.3:-17272468 | None:intergenic |
| TAGGACTCTGTAGGAACCTG+AGG | 0.590231 | 8.3:-17272660 | None:intergenic |
| ATTAGGCAAGTTTGTATGTG+TGG | 0.591730 | 8.3:+17273223 | MS.gene48363:CDS |
| GTGTTAGGTATTCTGTTCAA+GGG | 0.592070 | 8.3:+17273137 | MS.gene48363:CDS |
| GTTCGTGAAGTGTTAGAGCT+TGG | 0.605240 | 8.3:-17272700 | None:intergenic |
| AACACATGTAGATCATATTG+TGG | 0.606078 | 8.3:+17272533 | MS.gene48363:CDS |
| CAAAACGGATGTGGCCACCC+AGG | 0.607644 | 8.3:+17272587 | MS.gene48363:CDS |
| TTCATGTATGGGGACCGCCA+CGG | 0.609930 | 8.3:-17272785 | None:intergenic |
| AATAGGACACACAAGCCACT+AGG | 0.611415 | 8.3:-17273793 | None:intergenic |
| TGTCCTGCTTGGAATATGAT+GGG | 0.617971 | 8.3:+17272935 | MS.gene48363:CDS |
| TATTATCATCGGGAGCAAGA+AGG | 0.618389 | 8.3:+17273633 | MS.gene48363:CDS |
| CCTTGAAACAAAGGTGAACG+AGG | 0.620322 | 8.3:-17272848 | None:intergenic |
| AGAGTAGGTCACGGAAACCT+GGG | 0.621258 | 8.3:-17272604 | None:intergenic |
| GTCCTAGGAACCAAAGGCAA+CGG | 0.628622 | 8.3:+17272749 | MS.gene48363:CDS |
| CTTGAACAGAATACCTAACA+CGG | 0.629047 | 8.3:-17273135 | None:intergenic |
| GTTTCGCACGTAGACATGTG+TGG | 0.629216 | 8.3:-17272722 | None:intergenic |
| TGTAGGAACCTGAGGTTACG+TGG | 0.629711 | 8.3:-17272652 | None:intergenic |
| GATACAGCACAACACTCAGG+TGG | 0.631890 | 8.3:-17272998 | None:intergenic |
| ACACTAGTCCTAGGAACCAA+AGG | 0.632752 | 8.3:+17272743 | MS.gene48363:CDS |
| ATCTATTTGTAGGACTCTGT+AGG | 0.633162 | 8.3:-17272669 | None:intergenic |
| GGTGCTTGTCAGGCTACTGG+TGG | 0.639415 | 8.3:+17273175 | MS.gene48363:CDS |
| TGTTGTTAGAACAACTTGAA+GGG | 0.642633 | 8.3:-17272514 | None:intergenic |
| TAAGATACAGCACAACACTC+AGG | 0.645417 | 8.3:-17273001 | None:intergenic |
| ATCCCATAAGTCCAATCACT+AGG | 0.648619 | 8.3:-17273112 | None:intergenic |
| TTATGCAGAAGAGTAGGTCA+CGG | 0.652706 | 8.3:-17272613 | None:intergenic |
| ATACCAGAAACATTTCTGCA+TGG | 0.663576 | 8.3:-17272890 | None:intergenic |
| ATACAGCACAACACTCAGGT+GGG | 0.676071 | 8.3:-17272997 | None:intergenic |
| AGTGGCATTGGTGATCCTAG+TGG | 0.680115 | 8.3:+17273778 | MS.gene48363:CDS |
| GTTTCGCGGTCGAACCGTGG+CGG | 0.689256 | 8.3:+17272771 | MS.gene48363:CDS |
| GTAGGTCACGGAAACCTGGG+TGG | 0.745818 | 8.3:-17272601 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATAAATAATATCAATTA+CGG | + | chr8.3:17273502-17273521 | MS.gene48363:intron | 10.0% |
| !! | TAATTGATATTATTTATCAT+CGG | - | chr8.3:17273502-17273521 | None:intergenic | 10.0% |
| !! | AATTGATATTATTTATCATC+GGG | - | chr8.3:17273501-17273520 | None:intergenic | 15.0% |
| !! | ATAATATAATGATTAGATGA+TGG | - | chr8.3:17272475-17272494 | None:intergenic | 15.0% |
| !! | ATTTCATTACTTTGTTAATT+AGG | + | chr8.3:17273731-17273750 | MS.gene48363:intron | 15.0% |
| !!! | AAAATAACTTATTTTAGAGA+GGG | - | chr8.3:17273322-17273341 | None:intergenic | 15.0% |
| !!! | TAAAATAACTTATTTTAGAG+AGG | - | chr8.3:17273323-17273342 | None:intergenic | 15.0% |
| !!! | TCAAGATTCTATTAATTTTT+TGG | + | chr8.3:17273294-17273313 | MS.gene48363:intron | 15.0% |
| !! | ATTGATATTATTTATCATCG+GGG | - | chr8.3:17273500-17273519 | None:intergenic | 20.0% |
| !! | TCAAATTGTGAAACAATATT+TGG | - | chr8.3:17273429-17273448 | None:intergenic | 20.0% |
| ! | AAAAATGATCACTATAGCAT+AGG | - | chr8.3:17273592-17273611 | None:intergenic | 25.0% |
| ! | ATTGTGAAACAATATTTGGT+CGG | - | chr8.3:17273425-17273444 | None:intergenic | 25.0% |
| ! | ATTGTTTCACAATTTGAACT+AGG | + | chr8.3:17273432-17273451 | MS.gene48363:intron | 25.0% |
| ! | GTATCTTATGAAGCTATTAA+GGG | + | chr8.3:17273016-17273035 | MS.gene48363:CDS | 25.0% |
| ! | TATCTTATGAAGCTATTAAG+GGG | + | chr8.3:17273017-17273036 | MS.gene48363:CDS | 25.0% |
| ! | TGTATCTTATGAAGCTATTA+AGG | + | chr8.3:17273015-17273034 | MS.gene48363:CDS | 25.0% |
| ! | TTGTTTCACAATTTGAACTA+GGG | + | chr8.3:17273433-17273452 | MS.gene48363:intron | 25.0% |
| !! | TATGCTGTATATTTTCAAAG+TGG | + | chr8.3:17273760-17273779 | MS.gene48363:CDS | 25.0% |
| !!! | TATAATGATTAGATGATGGA+AGG | - | chr8.3:17272471-17272490 | None:intergenic | 25.0% |
| AACACATGTAGATCATATTG+TGG | + | chr8.3:17272533-17272552 | MS.gene48363:CDS | 30.0% | |
| CATTACTTTGTTAATTAGGC+TGG | + | chr8.3:17273735-17273754 | MS.gene48363:intron | 30.0% | |
| TGTTGTTAGAACAACTTGAA+GGG | - | chr8.3:17272517-17272536 | None:intergenic | 30.0% | |
| ! | GTATATTTTCAAAGTGGCAT+TGG | + | chr8.3:17273766-17273785 | MS.gene48363:CDS | 30.0% |
| ! | TTTTTCTGCATATTTTGCAG+TGG | + | chr8.3:17273607-17273626 | MS.gene48363:intron | 30.0% |
| AATGAGCATGAAAACGTTGT+CGG | - | chr8.3:17272819-17272838 | None:intergenic | 35.0% | |
| ATACCAGAAACATTTCTGCA+TGG | - | chr8.3:17272893-17272912 | None:intergenic | 35.0% | |
| ATCTATTTGTAGGACTCTGT+AGG | - | chr8.3:17272672-17272691 | None:intergenic | 35.0% | |
| ATGAGGTTGAAAATGTTTGC+AGG | + | chr8.3:17273659-17273678 | MS.gene48363:CDS | 35.0% | |
| ATGGAAGGTAGTGAAGAATT+TGG | - | chr8.3:17272456-17272475 | None:intergenic | 35.0% | |
| ATTAGGCAAGTTTGTATGTG+TGG | + | chr8.3:17273223-17273242 | MS.gene48363:CDS | 35.0% | |
| CTTGAACAGAATACCTAACA+CGG | - | chr8.3:17273138-17273157 | None:intergenic | 35.0% | |
| GGTATGCGTAATCTATTTGT+AGG | - | chr8.3:17272682-17272701 | None:intergenic | 35.0% | |
| GTGTTAGGTATTCTGTTCAA+GGG | + | chr8.3:17273137-17273156 | MS.gene48363:CDS | 35.0% | |
| TAAGTAAGCTTGAGTGTGAA+GGG | + | chr8.3:17273047-17273066 | MS.gene48363:CDS | 35.0% | |
| TCTCTCGAAAAAATCGTCTT+TGG | + | chr8.3:17273457-17273476 | MS.gene48363:intron | 35.0% | |
| TGCATGGCAAATGTTTATCA+GGG | - | chr8.3:17272877-17272896 | None:intergenic | 35.0% | |
| TTATAGTGTTGCACCTTTGA+AGG | + | chr8.3:17273081-17273100 | MS.gene48363:CDS | 35.0% | |
| ! | GCAAACATTTTCAACCTCAT+AGG | - | chr8.3:17273659-17273678 | None:intergenic | 35.0% |
| ! | GTGTTGTTAGAACAACTTGA+AGG | - | chr8.3:17272518-17272537 | None:intergenic | 35.0% |
| !! | ATGCAGAAATGTTTCTGGTA+TGG | + | chr8.3:17272892-17272911 | MS.gene48363:CDS | 35.0% |
| !! | TATGATGGGCCATAAAAAGA+CGG | + | chr8.3:17272949-17272968 | MS.gene48363:CDS | 35.0% |
| !! | TGCAGAAATGTTTCTGGTAT+GGG | + | chr8.3:17272893-17272912 | MS.gene48363:CDS | 35.0% |
| ACTTCAAATTGTGACTCAGC+AGG | + | chr8.3:17273259-17273278 | MS.gene48363:CDS | 40.0% | |
| AGTACTATGATTGTCCTGCT+TGG | + | chr8.3:17272924-17272943 | MS.gene48363:CDS | 40.0% | |
| ATCCCATAAGTCCAATCACT+AGG | - | chr8.3:17273115-17273134 | None:intergenic | 40.0% | |
| ATGAGCATGAAAACGTTGTC+GGG | - | chr8.3:17272818-17272837 | None:intergenic | 40.0% | |
| CGTGTTAGGTATTCTGTTCA+AGG | + | chr8.3:17273136-17273155 | MS.gene48363:CDS | 40.0% | |
| CGTTGTTTATGCAGAAGAGT+AGG | - | chr8.3:17272622-17272641 | None:intergenic | 40.0% | |
| CTAAGTAAGCTTGAGTGTGA+AGG | + | chr8.3:17273046-17273065 | MS.gene48363:CDS | 40.0% | |
| CTGCATGGCAAATGTTTATC+AGG | - | chr8.3:17272878-17272897 | None:intergenic | 40.0% | |
| GACCTAGTGATTGGACTTAT+GGG | + | chr8.3:17273110-17273129 | MS.gene48363:CDS | 40.0% | |
| GTCAGTGTGTCTTAATAACC+AGG | + | chr8.3:17273359-17273378 | MS.gene48363:intron | 40.0% | |
| TAAGATACAGCACAACACTC+AGG | - | chr8.3:17273004-17273023 | None:intergenic | 40.0% | |
| TATTATCATCGGGAGCAAGA+AGG | + | chr8.3:17273633-17273652 | MS.gene48363:CDS | 40.0% | |
| TCTTGCTCCCGATGATAATA+AGG | - | chr8.3:17273633-17273652 | None:intergenic | 40.0% | |
| TGTCCTGCTTGGAATATGAT+GGG | + | chr8.3:17272935-17272954 | MS.gene48363:CDS | 40.0% | |
| TTATGCAGAAGAGTAGGTCA+CGG | - | chr8.3:17272616-17272635 | None:intergenic | 40.0% | |
| TTGCCATGCAGAAATGTTTC+TGG | + | chr8.3:17272887-17272906 | MS.gene48363:CDS | 40.0% | |
| TTGTCCTGCTTGGAATATGA+TGG | + | chr8.3:17272934-17272953 | MS.gene48363:CDS | 40.0% | |
| ! | AAGAAGAGCCCGTCTTTTTA+TGG | - | chr8.3:17272961-17272980 | None:intergenic | 40.0% |
| !! | ATGATGGGCCATAAAAAGAC+GGG | + | chr8.3:17272950-17272969 | MS.gene48363:CDS | 40.0% |
| !! | TGCAGTGGCCTTATTATCAT+CGG | + | chr8.3:17273622-17273641 | MS.gene48363:intron | 40.0% |
| !!! | TCTTCTTCGTTTTTTGGGTC+TGG | + | chr8.3:17272974-17272993 | MS.gene48363:CDS | 40.0% |
| AATAGGACACACAAGCCACT+AGG | - | chr8.3:17273796-17273815 | None:intergenic | 45.0% | |
| ACACTAGTCCTAGGAACCAA+AGG | + | chr8.3:17272743-17272762 | MS.gene48363:CDS | 45.0% | |
| ATAACCAGGAGAATGAGCTC+TGG | + | chr8.3:17273373-17273392 | MS.gene48363:CDS | 45.0% | |
| ATACAGCACAACACTCAGGT+GGG | - | chr8.3:17273000-17273019 | None:intergenic | 45.0% | |
| ATGAAAACGTTGTCGGGTGT+TGG | - | chr8.3:17272812-17272831 | None:intergenic | 45.0% | |
| ATTACCAGAGCTCATTCTCC+TGG | - | chr8.3:17273380-17273399 | None:intergenic | 45.0% | |
| CCTTGAAACAAAGGTGAACG+AGG | - | chr8.3:17272851-17272870 | None:intergenic | 45.0% | |
| CTAGGTCCATCAACCTTCAA+AGG | - | chr8.3:17273097-17273116 | None:intergenic | 45.0% | |
| GGACCTAGTGATTGGACTTA+TGG | + | chr8.3:17273109-17273128 | MS.gene48363:CDS | 45.0% | |
| TACCCATTTGCCCTCCAAAA+CGG | + | chr8.3:17272572-17272591 | MS.gene48363:CDS | 45.0% | |
| TCAGGGAAGCCTTGAAACAA+AGG | - | chr8.3:17272860-17272879 | None:intergenic | 45.0% | |
| TGAAAACGTTGTCGGGTGTT+GGG | - | chr8.3:17272811-17272830 | None:intergenic | 45.0% | |
| ! | CAAGGGAGTGATGAGTTTTG+TGG | + | chr8.3:17273154-17273173 | MS.gene48363:CDS | 45.0% |
| ! | CCTCGTTCACCTTTGTTTCA+AGG | + | chr8.3:17272848-17272867 | MS.gene48363:CDS | 45.0% |
| ! | GTTCGTGAAGTGTTAGAGCT+TGG | - | chr8.3:17272703-17272722 | None:intergenic | 45.0% |
| ! | GTTGCACCTTTGAAGGTTGA+TGG | + | chr8.3:17273088-17273107 | MS.gene48363:CDS | 45.0% |
| !! | AGGTTGATGGACCTAGTGAT+TGG | + | chr8.3:17273101-17273120 | MS.gene48363:CDS | 45.0% |
| !! | AGTTGTGGGTATGGTTCTGA+TGG | + | chr8.3:17273199-17273218 | MS.gene48363:CDS | 45.0% |
| !! | GCAGTGGCCTTATTATCATC+GGG | + | chr8.3:17273623-17273642 | MS.gene48363:intron | 45.0% |
| !! | GGTATGGTTCTGATGGGATT+AGG | + | chr8.3:17273206-17273225 | MS.gene48363:CDS | 45.0% |
| !! | GTTGTGGGTATGGTTCTGAT+GGG | + | chr8.3:17273200-17273219 | MS.gene48363:CDS | 45.0% |
| !! | TGAGTTTTGTGGTGCTTGTC+AGG | + | chr8.3:17273165-17273184 | MS.gene48363:CDS | 45.0% |
| !!! | ACGGGCTCTTCTTCGTTTTT+TGG | + | chr8.3:17272968-17272987 | MS.gene48363:CDS | 45.0% |
| !!! | ATCCGTTTTGGAGGGCAAAT+GGG | - | chr8.3:17272577-17272596 | None:intergenic | 45.0% |
| !!! | CGGGCTCTTCTTCGTTTTTT+GGG | + | chr8.3:17272969-17272988 | MS.gene48363:CDS | 45.0% |
| AACCAAAGGCAACGGTTTCG+CGG | + | chr8.3:17272757-17272776 | MS.gene48363:CDS | 50.0% | |
| AAGAGTAGGTCACGGAAACC+TGG | - | chr8.3:17272608-17272627 | None:intergenic | 50.0% | |
| ACGTGCGAAACACTAGTCCT+AGG | + | chr8.3:17272734-17272753 | MS.gene48363:CDS | 50.0% | |
| ACTGGTGGTAGTTGTGGGTA+TGG | + | chr8.3:17273190-17273209 | MS.gene48363:CDS | 50.0% | |
| AGAGTAGGTCACGGAAACCT+GGG | - | chr8.3:17272607-17272626 | None:intergenic | 50.0% | |
| AGGCTACTGGTGGTAGTTGT+GGG | + | chr8.3:17273185-17273204 | MS.gene48363:CDS | 50.0% | |
| CTCATGTTCCACGTAACCTC+AGG | + | chr8.3:17272644-17272663 | MS.gene48363:CDS | 50.0% | |
| GATACAGCACAACACTCAGG+TGG | - | chr8.3:17273001-17273020 | None:intergenic | 50.0% | |
| GGACTTATGGGATCCGTGTT+AGG | + | chr8.3:17273122-17273141 | MS.gene48363:CDS | 50.0% | |
| GTCCTAGGAACCAAAGGCAA+CGG | + | chr8.3:17272749-17272768 | MS.gene48363:CDS | 50.0% | |
| GTTTCGCACGTAGACATGTG+TGG | - | chr8.3:17272725-17272744 | None:intergenic | 50.0% | |
| TAGGACTCTGTAGGAACCTG+AGG | - | chr8.3:17272663-17272682 | None:intergenic | 50.0% | |
| TGGCCCATCATATTCCAAGC+AGG | - | chr8.3:17272941-17272960 | None:intergenic | 50.0% | |
| TGTAGGAACCTGAGGTTACG+TGG | - | chr8.3:17272655-17272674 | None:intergenic | 50.0% | |
| TTTGCCCTCCAAAACGGATG+TGG | + | chr8.3:17272578-17272597 | MS.gene48363:CDS | 50.0% | |
| ! | AACCGTTGCCTTTGGTTCCT+AGG | - | chr8.3:17272754-17272773 | None:intergenic | 50.0% |
| !! | AGTGGCATTGGTGATCCTAG+TGG | + | chr8.3:17273778-17273797 | MS.gene48363:CDS | 50.0% |
| !! | CGGGTGTTGGGTTCATGTAT+GGG | - | chr8.3:17272799-17272818 | None:intergenic | 50.0% |
| !! | GGGTGTTGGGTTCATGTATG+GGG | - | chr8.3:17272798-17272817 | None:intergenic | 50.0% |
| !! | TCGGGTGTTGGGTTCATGTA+TGG | - | chr8.3:17272800-17272819 | None:intergenic | 50.0% |
| !!! | CATCCGTTTTGGAGGGCAAA+TGG | - | chr8.3:17272578-17272597 | None:intergenic | 50.0% |
| CAGGCTACTGGTGGTAGTTG+TGG | + | chr8.3:17273184-17273203 | MS.gene48363:CDS | 55.0% | |
| TGTGGTGCTTGTCAGGCTAC+TGG | + | chr8.3:17273172-17273191 | MS.gene48363:CDS | 55.0% | |
| TTCATGTATGGGGACCGCCA+CGG | - | chr8.3:17272788-17272807 | None:intergenic | 55.0% | |
| !! | GTGGCCACATCCGTTTTGGA+GGG | - | chr8.3:17272585-17272604 | None:intergenic | 55.0% |
| CAAAACGGATGTGGCCACCC+AGG | + | chr8.3:17272587-17272606 | MS.gene48363:CDS | 60.0% | |
| CGGGAGCAAGAAGGCCTATG+AGG | + | chr8.3:17273642-17273661 | MS.gene48363:CDS | 60.0% | |
| GACCGCGAAACCGTTGCCTT+TGG | - | chr8.3:17272762-17272781 | None:intergenic | 60.0% | |
| GGTGCTTGTCAGGCTACTGG+TGG | + | chr8.3:17273175-17273194 | MS.gene48363:CDS | 60.0% | |
| GTAGGTCACGGAAACCTGGG+TGG | - | chr8.3:17272604-17272623 | None:intergenic | 60.0% | |
| ! | CTGGGTGGCCACATCCGTTT+TGG | - | chr8.3:17272589-17272608 | None:intergenic | 60.0% |
| ! | GGTGGCCACATCCGTTTTGG+AGG | - | chr8.3:17272586-17272605 | None:intergenic | 60.0% |
| ACGGTTTCGCGGTCGAACCG+TGG | + | chr8.3:17272768-17272787 | MS.gene48363:CDS | 65.0% | |
| GTTTCGCGGTCGAACCGTGG+CGG | + | chr8.3:17272771-17272790 | MS.gene48363:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 17272449 | 17273825 | 17272449 | ID=MS.gene48363 |
| chr8.3 | mRNA | 17272449 | 17273825 | 17272449 | ID=MS.gene48363.t1;Parent=MS.gene48363 |
| chr8.3 | exon | 17272449 | 17273280 | 17272449 | ID=MS.gene48363.t1.exon1;Parent=MS.gene48363.t1 |
| chr8.3 | CDS | 17272449 | 17273280 | 17272449 | ID=cds.MS.gene48363.t1;Parent=MS.gene48363.t1 |
| chr8.3 | exon | 17273364 | 17273394 | 17273364 | ID=MS.gene48363.t1.exon2;Parent=MS.gene48363.t1 |
| chr8.3 | CDS | 17273364 | 17273394 | 17273364 | ID=cds.MS.gene48363.t1;Parent=MS.gene48363.t1 |
| chr8.3 | exon | 17273627 | 17273680 | 17273627 | ID=MS.gene48363.t1.exon3;Parent=MS.gene48363.t1 |
| chr8.3 | CDS | 17273627 | 17273680 | 17273627 | ID=cds.MS.gene48363.t1;Parent=MS.gene48363.t1 |
| chr8.3 | exon | 17273753 | 17273825 | 17273753 | ID=MS.gene48363.t1.exon4;Parent=MS.gene48363.t1 |
| chr8.3 | CDS | 17273753 | 17273825 | 17273753 | ID=cds.MS.gene48363.t1;Parent=MS.gene48363.t1 |
| Gene Sequence |
| Protein sequence |
