Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48838.t1 | XP_003605289.1 | 98.1 | 901 | 16 | 1 | 1 | 901 | 1 | 900 | 0.00E+00 | 1737.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48838.t1 | Q6Z3U3 | 49.6 | 932 | 402 | 20 | 3 | 885 | 14 | 926 | 1.7e-216 | 754.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48838.t1 | G7JIB0 | 98.1 | 901 | 16 | 1 | 1 | 901 | 1 | 900 | 0.0e+00 | 1737.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48838.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054178 | MS.gene48838 | 0.801419 | 9.09E-49 | -1.69E-46 |
| MS.gene057148 | MS.gene48838 | -0.816245 | 6.11E-52 | -1.69E-46 |
| MS.gene059778 | MS.gene48838 | 0.839034 | 2.02E-57 | -1.69E-46 |
| MS.gene060522 | MS.gene48838 | 0.836419 | 9.46E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48838.t1 | MTR_4g028130 | 98.113 | 901 | 16 | 1 | 1 | 901 | 1 | 900 | 0.0 | 1833 |
| MS.gene48838.t1 | MTR_4g028130 | 94.118 | 901 | 16 | 1 | 1 | 901 | 1 | 864 | 0.0 | 1743 |
| MS.gene48838.t1 | MTR_4g028130 | 98.128 | 641 | 11 | 1 | 1 | 641 | 1 | 640 | 0.0 | 1312 |
| MS.gene48838.t1 | MTR_3g467380 | 48.115 | 902 | 416 | 12 | 19 | 887 | 16 | 898 | 0.0 | 793 |
| MS.gene48838.t1 | MTR_5g075410 | 43.426 | 829 | 403 | 12 | 1 | 815 | 1 | 777 | 0.0 | 612 |
| MS.gene48838.t1 | MTR_2g011940 | 51.706 | 586 | 217 | 13 | 270 | 839 | 299 | 834 | 4.70e-180 | 543 |
| MS.gene48838.t1 | MTR_2g011940 | 43.411 | 129 | 56 | 2 | 4 | 132 | 20 | 131 | 1.88e-26 | 117 |
| MS.gene48838.t1 | MTR_2g011940 | 55.978 | 368 | 124 | 4 | 270 | 637 | 308 | 637 | 6.11e-128 | 400 |
| MS.gene48838.t1 | MTR_2g011940 | 43.411 | 129 | 56 | 2 | 4 | 132 | 29 | 140 | 1.29e-26 | 116 |
| MS.gene48838.t1 | MTR_2g011940 | 55.978 | 368 | 124 | 4 | 270 | 637 | 308 | 637 | 2.23e-127 | 399 |
| MS.gene48838.t1 | MTR_2g011940 | 43.411 | 129 | 56 | 2 | 4 | 132 | 29 | 140 | 2.37e-26 | 115 |
| MS.gene48838.t1 | MTR_7g073240 | 55.357 | 224 | 97 | 2 | 199 | 419 | 3 | 226 | 3.49e-70 | 237 |
| MS.gene48838.t1 | MTR_7g073240 | 53.147 | 143 | 52 | 4 | 485 | 625 | 230 | 359 | 2.79e-39 | 150 |
| MS.gene48838.t1 | MTR_7g083700 | 39.806 | 103 | 61 | 1 | 314 | 415 | 126 | 228 | 1.96e-18 | 87.8 |
| MS.gene48838.t1 | MTR_7g059330 | 35.714 | 98 | 62 | 1 | 314 | 410 | 623 | 720 | 1.18e-14 | 79.0 |
| MS.gene48838.t1 | MTR_1g058350 | 36.090 | 133 | 65 | 6 | 295 | 414 | 54 | 179 | 1.49e-14 | 76.3 |
| MS.gene48838.t1 | MTR_8g023990 | 37.273 | 110 | 61 | 4 | 314 | 417 | 171 | 278 | 3.24e-14 | 77.0 |
| MS.gene48838.t1 | MTR_7g117455 | 40.659 | 91 | 49 | 3 | 314 | 401 | 117 | 205 | 9.05e-14 | 75.1 |
| MS.gene48838.t1 | MTR_7g105370 | 39.252 | 107 | 58 | 5 | 319 | 421 | 65 | 168 | 8.67e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48838.t1 | AT4G32010 | 50.117 | 858 | 311 | 15 | 1 | 852 | 1 | 747 | 0.0 | 796 |
| MS.gene48838.t1 | AT4G32010 | 49.884 | 862 | 311 | 16 | 1 | 852 | 1 | 751 | 0.0 | 790 |
| MS.gene48838.t1 | AT2G30470 | 51.348 | 779 | 306 | 19 | 1 | 765 | 6 | 725 | 0.0 | 710 |
| MS.gene48838.t1 | AT4G21550 | 34.396 | 596 | 282 | 15 | 3 | 570 | 14 | 528 | 4.31e-93 | 305 |
| MS.gene48838.t1 | AT4G21550 | 34.899 | 596 | 280 | 12 | 3 | 571 | 14 | 528 | 1.24e-89 | 300 |
| MS.gene48838.t1 | AT4G21550 | 37.795 | 127 | 57 | 3 | 687 | 812 | 550 | 655 | 4.45e-12 | 70.5 |
| MS.gene48838.t1 | AT4G21550 | 33.793 | 580 | 276 | 13 | 3 | 555 | 14 | 512 | 9.55e-89 | 292 |
| MS.gene48838.t1 | AT3G26790 | 39.450 | 109 | 65 | 1 | 314 | 421 | 91 | 199 | 7.62e-20 | 92.0 |
| MS.gene48838.t1 | AT5G06250 | 32.948 | 173 | 95 | 5 | 314 | 467 | 45 | 215 | 1.08e-16 | 81.6 |
| MS.gene48838.t1 | AT5G06250 | 32.948 | 173 | 95 | 5 | 314 | 467 | 45 | 215 | 1.09e-16 | 82.0 |
| MS.gene48838.t1 | AT5G06250 | 32.948 | 173 | 95 | 5 | 314 | 467 | 45 | 215 | 1.17e-16 | 82.0 |
| MS.gene48838.t1 | AT1G13260 | 40.000 | 110 | 59 | 5 | 314 | 418 | 187 | 294 | 1.83e-15 | 79.3 |
| MS.gene48838.t1 | AT3G24650 | 37.931 | 116 | 70 | 2 | 314 | 427 | 571 | 686 | 2.30e-15 | 81.3 |
| MS.gene48838.t1 | AT1G28300 | 40.741 | 108 | 60 | 3 | 294 | 398 | 149 | 255 | 3.13e-15 | 79.0 |
| MS.gene48838.t1 | AT2G36080 | 39.815 | 108 | 56 | 4 | 314 | 414 | 37 | 142 | 4.07e-15 | 74.7 |
| MS.gene48838.t1 | AT2G36080 | 39.815 | 108 | 56 | 4 | 314 | 414 | 37 | 142 | 4.07e-15 | 74.7 |
| MS.gene48838.t1 | AT2G36080 | 39.815 | 108 | 56 | 4 | 314 | 414 | 37 | 142 | 4.61e-15 | 76.3 |
| MS.gene48838.t1 | AT2G36080 | 39.815 | 108 | 56 | 4 | 314 | 414 | 37 | 142 | 4.88e-15 | 76.3 |
| MS.gene48838.t1 | AT5G06250 | 36.923 | 130 | 56 | 5 | 314 | 419 | 45 | 172 | 5.22e-15 | 76.6 |
| MS.gene48838.t1 | AT5G06250 | 33.103 | 145 | 81 | 4 | 314 | 444 | 45 | 187 | 5.82e-15 | 76.6 |
| MS.gene48838.t1 | AT4G01500 | 38.261 | 115 | 59 | 4 | 297 | 401 | 9 | 121 | 2.44e-14 | 75.9 |
| MS.gene48838.t1 | AT1G68840 | 43.011 | 93 | 46 | 4 | 314 | 401 | 187 | 277 | 4.04e-14 | 75.5 |
| MS.gene48838.t1 | AT1G68840 | 43.011 | 93 | 46 | 4 | 314 | 401 | 187 | 277 | 4.04e-14 | 75.5 |
| MS.gene48838.t1 | AT2G46870 | 39.560 | 91 | 50 | 3 | 314 | 401 | 34 | 122 | 7.82e-14 | 73.9 |
| MS.gene48838.t1 | AT3G11580 | 36.207 | 116 | 57 | 4 | 314 | 414 | 28 | 141 | 6.82e-13 | 69.7 |
| MS.gene48838.t1 | AT3G11580 | 36.207 | 116 | 57 | 4 | 314 | 414 | 28 | 141 | 6.82e-13 | 69.7 |
| MS.gene48838.t1 | AT3G11580 | 36.207 | 116 | 57 | 4 | 314 | 414 | 28 | 141 | 6.82e-13 | 69.7 |
| MS.gene48838.t1 | AT1G01030 | 40.659 | 91 | 49 | 3 | 314 | 401 | 55 | 143 | 7.02e-13 | 71.2 |
| MS.gene48838.t1 | AT1G01030 | 40.659 | 91 | 49 | 3 | 314 | 401 | 55 | 143 | 8.77e-13 | 71.2 |
| MS.gene48838.t1 | AT3G11580 | 36.207 | 116 | 57 | 4 | 314 | 414 | 28 | 141 | 4.27e-12 | 69.3 |
| MS.gene48838.t1 | AT3G11580 | 36.207 | 116 | 57 | 4 | 314 | 414 | 28 | 141 | 4.76e-12 | 67.8 |
Find 240 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATGTTTCAATTTAGATTT+TGG | 0.133418 | 4.4:-74256015 | MS.gene48838:CDS |
| TACATCCTGCTATTATTATT+TGG | 0.167699 | 4.4:+74255992 | None:intergenic |
| CAACTCTTGATCTGTAATTC+TGG | 0.172835 | 4.4:+74256477 | None:intergenic |
| TTACCCTCTGTTGGAGAATT+TGG | 0.188202 | 4.4:-74256853 | MS.gene48838:CDS |
| GCATACCCCTCACATTTAAT+TGG | 0.234093 | 4.4:+74256974 | None:intergenic |
| AAGAAAAGAACTCGAAATAT+TGG | 0.272591 | 4.4:-74254967 | MS.gene48838:CDS |
| GGACGTGTATGGAGAACTTT+TGG | 0.278484 | 4.4:-74254078 | MS.gene48838:CDS |
| TCAAGTGAAACTTCCTATTC+TGG | 0.278901 | 4.4:-74255186 | MS.gene48838:CDS |
| CCAACAGAGGGTAAAACTTC+TGG | 0.283471 | 4.4:+74256862 | None:intergenic |
| GAGGCCTTGCTATACGTATC+TGG | 0.288912 | 4.4:+74256545 | None:intergenic |
| ATTACTTCAGCACATGCTTT+TGG | 0.292122 | 4.4:+74256217 | None:intergenic |
| CCTATATTAAGTGGTTATTC+TGG | 0.299020 | 4.4:-74255147 | MS.gene48838:CDS |
| CAAACCTCACAATGTTGATT+TGG | 0.320944 | 4.4:-74256908 | MS.gene48838:CDS |
| ATCAGTTGCTTCCGCGATAT+TGG | 0.327434 | 4.4:-74256501 | MS.gene48838:CDS |
| ATTCAGGAGCCTCCTGTGTT+TGG | 0.329853 | 4.4:-74254359 | MS.gene48838:intron |
| CAACTGCAAGCTGGCGATAC+TGG | 0.336996 | 4.4:-74255932 | MS.gene48838:intron |
| TCTTGCCCACTATTCTCTTC+AGG | 0.340208 | 4.4:+74252163 | None:intergenic |
| TGCCCTTCCCACTTGGTGGC+TGG | 0.342375 | 4.4:+74252707 | None:intergenic |
| ACAACACTTGGCTTAACTTC+TGG | 0.343319 | 4.4:+74254853 | None:intergenic |
| CCCTGAGGGGAAACTTATAA+TGG | 0.343393 | 4.4:-74255350 | MS.gene48838:CDS |
| AGAGTTGGCCTAGGAGGTTT+AGG | 0.345670 | 4.4:+74256604 | None:intergenic |
| TTCCCTTGGATTCAATTCAT+TGG | 0.348370 | 4.4:+74253945 | None:intergenic |
| CACTGGAGCTGAAACTTACT+TGG | 0.350730 | 4.4:-74254906 | MS.gene48838:CDS |
| AATGAAAAGCCTAATGAATC+TGG | 0.351647 | 4.4:-74257048 | MS.gene48838:CDS |
| ACTTTCTAGAGAGCGCATTT+AGG | 0.352085 | 4.4:+74255088 | None:intergenic |
| TCAAGAGTTGCAGCAAATAT+CGG | 0.354064 | 4.4:-74256464 | MS.gene48838:CDS |
| CGACATTTAACTCCAGTTGA+TGG | 0.354939 | 4.4:-74252517 | MS.gene48838:CDS |
| TTTGCTGTTCCAGATTCATT+AGG | 0.360782 | 4.4:+74257039 | None:intergenic |
| TTACTTGAATCTAATTCATT+TGG | 0.362360 | 4.4:+74252472 | None:intergenic |
| TTGTCTTCCCTCACTCTCAT+TGG | 0.362735 | 4.4:+74252234 | None:intergenic |
| ATGTGAGGGGTATGCAAGTT+GGG | 0.375012 | 4.4:-74256966 | MS.gene48838:CDS |
| CAGCATCAGCCACTTGGTCT+TGG | 0.376062 | 4.4:+74252449 | None:intergenic |
| TCCCTTGGATTCAATTCATT+GGG | 0.378007 | 4.4:+74253946 | None:intergenic |
| AGGACATTATGAAAGGGATT+TGG | 0.378577 | 4.4:+74256697 | None:intergenic |
| TTAGCAAATGCTGCGGTACT+TGG | 0.380392 | 4.4:-74252820 | MS.gene48838:CDS |
| GTCTACTTCTGATTCATCCT+TGG | 0.381182 | 4.4:+74252549 | None:intergenic |
| AGGCCCTCAGGTTGAGAGAT+AGG | 0.381204 | 4.4:+74256073 | None:intergenic |
| ATTACCTGTGCAAGTACTTC+AGG | 0.390989 | 4.4:-74257560 | MS.gene48838:CDS |
| ATATTTGTGGTACGATCTAC+TGG | 0.393389 | 4.4:-74254326 | MS.gene48838:CDS |
| TGGCCTTCTTCAGTCTCAAA+AGG | 0.396098 | 4.4:-74255127 | MS.gene48838:CDS |
| GCTCTGGATCGTGAATCTTC+TGG | 0.398177 | 4.4:-74252853 | MS.gene48838:CDS |
| ACTTACTTGGGAAGAGGCTC+AGG | 0.399619 | 4.4:-74254893 | MS.gene48838:CDS |
| GTCATCATGCTCAGAGTGTT+TGG | 0.401168 | 4.4:+74252370 | None:intergenic |
| GGAAACTTATAATGGGGTTC+AGG | 0.403096 | 4.4:-74255342 | MS.gene48838:CDS |
| TTCCTTCCTCGTCCTTCGGC+AGG | 0.411704 | 4.4:+74256523 | None:intergenic |
| CCAGAATAACCACTTAATAT+AGG | 0.414414 | 4.4:+74255147 | None:intergenic |
| TCTGGTTTGATTTCTCTAGA+AGG | 0.414545 | 4.4:+74256880 | None:intergenic |
| ACTCTATCTCCAGGCTTAGA+AGG | 0.416607 | 4.4:-74256586 | MS.gene48838:CDS |
| TGAATTGAATCCAAGGGAAC+TGG | 0.417947 | 4.4:-74253941 | MS.gene48838:CDS |
| TCATTCTCCGAACCATCAAC+TGG | 0.418732 | 4.4:+74252505 | None:intergenic |
| AGAAAAGAACTCGAAATATT+GGG | 0.421447 | 4.4:-74254966 | MS.gene48838:CDS |
| TGCTTCTGCAGTTCATGAAC+AGG | 0.426089 | 4.4:-74252194 | MS.gene48838:CDS |
| CTTGAATTGCCAACCGGATC+GGG | 0.426831 | 4.4:-74252410 | MS.gene48838:CDS |
| GGGAATTATGCAGAAAATGA+TGG | 0.428592 | 4.4:-74256946 | MS.gene48838:CDS |
| TCTCCATACACGTCCACTTA+GGG | 0.429073 | 4.4:+74254086 | None:intergenic |
| AACTCTTGATCTGTAATTCT+GGG | 0.432750 | 4.4:+74256478 | None:intergenic |
| AATGTCACCTCCACTTCTAT+TGG | 0.433907 | 4.4:-74256650 | MS.gene48838:CDS |
| GCTTGCATGTCTTCCCGATC+CGG | 0.434187 | 4.4:+74252397 | None:intergenic |
| ATGTTCCATGCAAAAGAATC+TGG | 0.435693 | 4.4:-74257771 | MS.gene48838:CDS |
| CCTGTGTTTCCTTCTAAGCC+TGG | 0.440594 | 4.4:+74256577 | None:intergenic |
| CCTTGGCAGCATCAGCCACT+TGG | 0.441564 | 4.4:+74252443 | None:intergenic |
| ATTCTCATAAACACCAGAAT+AGG | 0.444115 | 4.4:+74255173 | None:intergenic |
| TTCACTTGAATGAGAACCAT+TGG | 0.445941 | 4.4:+74255200 | None:intergenic |
| TAATGTCCTTGTTGATGAAA+GGG | 0.448219 | 4.4:-74256683 | MS.gene48838:CDS |
| CACGATCCAGAGCTGGCCTC+TGG | 0.448625 | 4.4:+74252863 | None:intergenic |
| TTCTTCTCAGGAACCAGCAC+AGG | 0.450915 | 4.4:+74254985 | None:intergenic |
| GGCAAGCCAGAGGCCAGCTC+TGG | 0.450969 | 4.4:-74252869 | MS.gene48838:CDS |
| CCCATTATAAGTTTCCCCTC+AGG | 0.451841 | 4.4:+74255349 | None:intergenic |
| AAAATGATGGGATGAGGTAC+TGG | 0.452920 | 4.4:-74256933 | MS.gene48838:CDS |
| TGCTGGTCGAATTGGTCGCT+TGG | 0.454425 | 4.4:-74256245 | MS.gene48838:CDS |
| AATGTGAGGGGTATGCAAGT+TGG | 0.455328 | 4.4:-74256967 | MS.gene48838:CDS |
| CTGATTCCTTCCTCGTCCTT+CGG | 0.456088 | 4.4:+74256519 | None:intergenic |
| TTTAACTCCAGTTGATGGTT+CGG | 0.456293 | 4.4:-74252512 | MS.gene48838:CDS |
| AAAAGATTATCCAGTTCCCT+TGG | 0.457180 | 4.4:+74253931 | None:intergenic |
| CAACAAGACACCCTCGTCAT+AGG | 0.457379 | 4.4:-74252756 | MS.gene48838:CDS |
| CAATTTCATCGTGAGTCAAA+TGG | 0.458649 | 4.4:-74256814 | MS.gene48838:CDS |
| ATAATGTCCTTGTTGATGAA+AGG | 0.463710 | 4.4:-74256684 | MS.gene48838:CDS |
| GGCCTTCTTCAGTCTCAAAA+GGG | 0.464157 | 4.4:-74255126 | MS.gene48838:CDS |
| TGGAAAGAAGAGTATATTTG+TGG | 0.465676 | 4.4:-74254339 | MS.gene48838:CDS |
| TGTTGCATGAACGTTGTTTG+TGG | 0.466630 | 4.4:-74259550 | MS.gene48838:CDS |
| CAGTTGCATAGACTGAATAC+AGG | 0.468777 | 4.4:+74255949 | None:intergenic |
| CCTGAGGGGAAACTTATAAT+GGG | 0.471341 | 4.4:-74255349 | MS.gene48838:CDS |
| GAGAATATACCTATATTAAG+TGG | 0.472374 | 4.4:-74255156 | MS.gene48838:CDS |
| AACAAATTCTGCTTCAGTAC+AGG | 0.472669 | 4.4:-74255314 | MS.gene48838:intron |
| AGGCCTCCTGCCGAAGGACG+AGG | 0.477953 | 4.4:-74256529 | MS.gene48838:CDS |
| TGTTTGCCCTTCCCACTTGG+TGG | 0.481303 | 4.4:+74252703 | None:intergenic |
| GCAAGTGATGCTGGTCGAAT+TGG | 0.484028 | 4.4:-74256253 | MS.gene48838:CDS |
| CAAGAGTTGCAGCAAATATC+GGG | 0.484696 | 4.4:-74256463 | MS.gene48838:CDS |
| TTCCCAGCAGTGCATATCTC+TGG | 0.485291 | 4.4:-74257001 | MS.gene48838:CDS |
| GGAGATGATGCAAGTGACTC+TGG | 0.485895 | 4.4:-74252799 | MS.gene48838:CDS |
| CCTCACAATGTTGATTTGGA+TGG | 0.486454 | 4.4:-74256904 | MS.gene48838:CDS |
| AGACACCCTCGTCATAGGCC+TGG | 0.487047 | 4.4:-74252751 | MS.gene48838:CDS |
| GACAGTCCTGAAGAGAATAG+TGG | 0.489705 | 4.4:-74252169 | MS.gene48838:CDS |
| TAGCCAGAGATATGCACTGC+TGG | 0.491104 | 4.4:+74256998 | None:intergenic |
| CGATTCGGTGGCGGAAAGGT+TGG | 0.493342 | 4.4:-74259516 | MS.gene48838:CDS |
| TATTGATAGCGAGGATGCAC+TGG | 0.493835 | 4.4:-74254923 | MS.gene48838:CDS |
| GTGGAACCTCTACGTCGATT+CGG | 0.494921 | 4.4:-74259531 | MS.gene48838:CDS |
| CCAAGTGGCTGATGCTGCCA+AGG | 0.498515 | 4.4:-74252443 | MS.gene48838:CDS |
| TTTGGCCAAATAATAATAGC+AGG | 0.500753 | 4.4:-74255997 | MS.gene48838:CDS |
| ATCAACAAGGACATTATGAA+AGG | 0.502025 | 4.4:+74256690 | None:intergenic |
| GAGACATACCTGAAGCAAAA+TGG | 0.503082 | 4.4:-74252319 | MS.gene48838:CDS |
| TTCAAGAAAGTGAATTGTGT+TGG | 0.503800 | 4.4:+74252134 | None:intergenic |
| GTGAGTCAAATGGTTCATCT+AGG | 0.506203 | 4.4:-74256804 | MS.gene48838:CDS |
| GGCTAACCAATTAAATGTGA+GGG | 0.506229 | 4.4:-74256980 | MS.gene48838:CDS |
| TCACTTGAATGAGAACCATT+GGG | 0.509159 | 4.4:+74255201 | None:intergenic |
| GTTGTCTTTACCACCTGTGC+TGG | 0.513012 | 4.4:-74254998 | MS.gene48838:CDS |
| TGCTTCAGGTATGTCTCCAA+CGG | 0.513673 | 4.4:+74252325 | None:intergenic |
| GCTTCAGGTATGTCTCCAAC+GGG | 0.514701 | 4.4:+74252326 | None:intergenic |
| CTTCCTCGTCCTTCGGCAGG+AGG | 0.514830 | 4.4:+74256526 | None:intergenic |
| CAGTCTATGCAACTGCAAGC+TGG | 0.514895 | 4.4:-74255941 | MS.gene48838:CDS |
| CCTGGAGATAGAGTTGGCCT+AGG | 0.516685 | 4.4:+74256595 | None:intergenic |
| TGCAGTAACATTTAGCCGTA+TGG | 0.517779 | 4.4:-74255374 | MS.gene48838:intron |
| ACTTGAATTGCCAACCGGAT+CGG | 0.518323 | 4.4:-74252411 | MS.gene48838:CDS |
| AAATTCAGCTTCAAATGTGC+AGG | 0.519112 | 4.4:-74252266 | MS.gene48838:CDS |
| TTCTAGAGAGCGCATTTAGG+TGG | 0.520190 | 4.4:+74255091 | None:intergenic |
| CCCTCCTATCTCTCAACCTG+AGG | 0.521917 | 4.4:-74256077 | MS.gene48838:CDS |
| TAAATGCGCTCTCTAGAAAG+TGG | 0.523105 | 4.4:-74255086 | MS.gene48838:CDS |
| TTGTGTTTGCCCTTCCCACT+TGG | 0.523559 | 4.4:+74252700 | None:intergenic |
| ATTAGACTTGAATTGCCAAC+CGG | 0.524003 | 4.4:-74252416 | MS.gene48838:CDS |
| GCAAGATATATATGAATCAC+TGG | 0.525449 | 4.4:-74256758 | MS.gene48838:CDS |
| CCGATCTATGTGATAAGTGC+GGG | 0.529734 | 4.4:-74259471 | MS.gene48838:intron |
| ATGTAGAAATGCCTGAAAGC+AGG | 0.533071 | 4.4:-74255032 | MS.gene48838:CDS |
| AGGCCTTGCTATACGTATCT+GGG | 0.533919 | 4.4:+74256546 | None:intergenic |
| TCCTCGATCATGACAACACT+TGG | 0.535986 | 4.4:+74254841 | None:intergenic |
| GAGTGAGGGAAGACAAAATG+AGG | 0.539623 | 4.4:-74252227 | MS.gene48838:CDS |
| CTCCCAATGAATTGAATCCA+AGG | 0.539749 | 4.4:-74253948 | MS.gene48838:CDS |
| ACATAGATCGGCAAATTCAC+CGG | 0.541892 | 4.4:+74259483 | None:intergenic |
| TCAACAAGGACATTATGAAA+GGG | 0.542098 | 4.4:+74256691 | None:intergenic |
| ATGCTTAGTGCAAGTGATGC+TGG | 0.543355 | 4.4:-74256262 | MS.gene48838:CDS |
| CCTAGGCCAACTCTATCTCC+AGG | 0.543621 | 4.4:-74256595 | MS.gene48838:CDS |
| TTCTCCATACACGTCCACTT+AGG | 0.543699 | 4.4:+74254085 | None:intergenic |
| CAGTTGGTGCTGACATGGAT+TGG | 0.544785 | 4.4:-74255059 | MS.gene48838:CDS |
| ATTCAAGTCTAATTGTCCCT+TGG | 0.544992 | 4.4:+74252426 | None:intergenic |
| GAAGATTCACGATCCAGAGC+TGG | 0.546355 | 4.4:+74252856 | None:intergenic |
| ATACGCAAAGGAAGGCCCTC+AGG | 0.550975 | 4.4:+74256061 | None:intergenic |
| ATTTGGCAAAGGAGCGGTAA+GGG | 0.556170 | 4.4:+74256714 | None:intergenic |
| AGCACCCAGGCCTATGACGA+GGG | 0.556180 | 4.4:+74252746 | None:intergenic |
| GACACCCTCGTCATAGGCCT+GGG | 0.556520 | 4.4:-74252750 | MS.gene48838:CDS |
| CCATTATAAGTTTCCCCTCA+GGG | 0.557442 | 4.4:+74255350 | None:intergenic |
| AAGTCCTGAAGTACTTGCAC+AGG | 0.558364 | 4.4:+74257556 | None:intergenic |
| ATGATGCAAGTGACTCTGGC+AGG | 0.558412 | 4.4:-74252795 | MS.gene48838:CDS |
| GAACTCAGTTGGTGCTGACA+TGG | 0.559385 | 4.4:-74255064 | MS.gene48838:CDS |
| AAGATGTGAAAGGAAAAGAA+TGG | 0.562266 | 4.4:-74256036 | MS.gene48838:CDS |
| TTTCCGTCTAATATGCCCAA+TGG | 0.563491 | 4.4:-74255216 | MS.gene48838:CDS |
| GATCGGGAAGACATGCAAGC+TGG | 0.563741 | 4.4:-74252394 | MS.gene48838:CDS |
| GTTTCCCCTCAGGGTCCATA+CGG | 0.563865 | 4.4:+74255359 | None:intergenic |
| CTTGGCTTAACTTCTGGAGG+TGG | 0.565044 | 4.4:+74254859 | None:intergenic |
| CCCGCACTTATCACATAGAT+CGG | 0.565675 | 4.4:+74259471 | None:intergenic |
| GCTGAAACTTACTTGGGAAG+AGG | 0.565759 | 4.4:-74254899 | MS.gene48838:CDS |
| TATCCAGCCACCAAGTGGGA+AGG | 0.566881 | 4.4:-74252710 | MS.gene48838:CDS |
| AAAGGTTGGATTCTTCGATC+CGG | 0.567319 | 4.4:-74259502 | MS.gene48838:CDS |
| ATGCAGAAAATGATGGGATG+AGG | 0.568840 | 4.4:-74256939 | MS.gene48838:CDS |
| ATCCAGCCACCAAGTGGGAA+GGG | 0.569945 | 4.4:-74252709 | MS.gene48838:CDS |
| GACAAGCAGCGGCAAGCCAG+AGG | 0.570055 | 4.4:-74252879 | MS.gene48838:CDS |
| TTCTCAGGAACCAGCACAGG+TGG | 0.570575 | 4.4:+74254988 | None:intergenic |
| CCTCCTATCTCTCAACCTGA+GGG | 0.572708 | 4.4:-74256076 | MS.gene48838:CDS |
| ACGTCGATTCGGTGGCGGAA+AGG | 0.573751 | 4.4:-74259520 | MS.gene48838:CDS |
| ACTTATAATGGGGTTCAGGA+AGG | 0.575522 | 4.4:-74255338 | MS.gene48838:CDS |
| CCTCTACGTCGATTCGGTGG+CGG | 0.575763 | 4.4:-74259525 | MS.gene48838:CDS |
| AGCCAGAGATATGCACTGCT+GGG | 0.576349 | 4.4:+74256999 | None:intergenic |
| GATTTGGCAAAGGAGCGGTA+AGG | 0.576714 | 4.4:+74256713 | None:intergenic |
| TGTCTTGTTGTGGTCAACAC+TGG | 0.577354 | 4.4:+74252769 | None:intergenic |
| TCTAGAAAGTGGAACTCAGT+TGG | 0.578317 | 4.4:-74255075 | MS.gene48838:CDS |
| GGAGATAGAGTTGGCCTAGG+AGG | 0.578335 | 4.4:+74256598 | None:intergenic |
| TCTAGAGAGCGCATTTAGGT+GGG | 0.579194 | 4.4:+74255092 | None:intergenic |
| TCCATGCAAAAGAATCTGGT+TGG | 0.579415 | 4.4:-74257767 | MS.gene48838:CDS |
| TTCAAAGAGTGGCACAATGG+TGG | 0.580676 | 4.4:+74256288 | None:intergenic |
| GGAATTATGCAGAAAATGAT+GGG | 0.581193 | 4.4:-74256945 | MS.gene48838:CDS |
| GCATGTCTTCCCGATCCGGT+TGG | 0.581547 | 4.4:+74252401 | None:intergenic |
| CCTCAGGTTGAGAGATAGGA+GGG | 0.582109 | 4.4:+74256077 | None:intergenic |
| TCTAAGCCTGGAGATAGAGT+TGG | 0.583408 | 4.4:+74256589 | None:intergenic |
| TCAAATGGTTCATCTAGGAC+TGG | 0.583729 | 4.4:-74256799 | MS.gene48838:CDS |
| GATCTAGACGCCAATAGAAG+TGG | 0.585121 | 4.4:+74256640 | None:intergenic |
| TATCTGCAGCGTCTCCATTG+TGG | 0.587990 | 4.4:-74257638 | MS.gene48838:intron |
| ATAGCAAGGCCTCCTGCCGA+AGG | 0.591462 | 4.4:-74256535 | MS.gene48838:CDS |
| ATACTCTTCTTTCCAAACAC+AGG | 0.593392 | 4.4:+74254347 | None:intergenic |
| GTCTGTATCCAGCCACCAAG+TGG | 0.593579 | 4.4:-74252715 | MS.gene48838:CDS |
| ATGACGAGGGTGTCTTGTTG+TGG | 0.595378 | 4.4:+74252759 | None:intergenic |
| CAGACATTACACGTGCATGT+AGG | 0.595381 | 4.4:+74252676 | None:intergenic |
| ACACTTGGCTTAACTTCTGG+AGG | 0.596735 | 4.4:+74254856 | None:intergenic |
| TTATGAAAGGGATTTGGCAA+AGG | 0.597001 | 4.4:+74256703 | None:intergenic |
| CCCTCAGGTTGAGAGATAGG+AGG | 0.598922 | 4.4:+74256076 | None:intergenic |
| GCTTCCAAATTCTCCAACAG+AGG | 0.599653 | 4.4:+74256849 | None:intergenic |
| ACAGTCCTGAAGAGAATAGT+GGG | 0.601508 | 4.4:-74252168 | MS.gene48838:CDS |
| TTCACATCTTGGATACGCAA+AGG | 0.602051 | 4.4:+74256049 | None:intergenic |
| TCCCAATGAATTGAATCCAA+GGG | 0.602257 | 4.4:-74253947 | MS.gene48838:CDS |
| TGGCTGGATACAGACAATAC+AGG | 0.604446 | 4.4:+74252723 | None:intergenic |
| GAGGTTGCTTATTGATAGCG+AGG | 0.605174 | 4.4:-74254932 | MS.gene48838:CDS |
| GAACCATTGGGCATATTAGA+CGG | 0.606117 | 4.4:+74255213 | None:intergenic |
| CATCTTGGATACGCAAAGGA+AGG | 0.606572 | 4.4:+74256053 | None:intergenic |
| CTCTTCTTTCCAAACACAGG+AGG | 0.606920 | 4.4:+74254350 | None:intergenic |
| CCATCCAAATCAACATTGTG+AGG | 0.607409 | 4.4:+74256904 | None:intergenic |
| TGGCTAACCAATTAAATGTG+AGG | 0.608102 | 4.4:-74256981 | MS.gene48838:CDS |
| TGAAGAAGCAAATCTCCCGT+TGG | 0.612037 | 4.4:-74252341 | MS.gene48838:CDS |
| CTCCATACACGTCCACTTAG+GGG | 0.615994 | 4.4:+74254087 | None:intergenic |
| TTGCGTATCCAAGATGTGAA+AGG | 0.616182 | 4.4:-74256046 | MS.gene48838:CDS |
| TCCATACACGTCCACTTAGG+GGG | 0.618210 | 4.4:+74254088 | None:intergenic |
| AGAGTGTACTTCATGTGGCA+AGG | 0.623087 | 4.4:-74257742 | MS.gene48838:intron |
| CAAGAAACAAAGACAAGCAG+CGG | 0.623503 | 4.4:-74252890 | MS.gene48838:CDS |
| TTTGTTCCCTTTCATCAACA+AGG | 0.624287 | 4.4:+74256677 | None:intergenic |
| GAGCACCCAGGCCTATGACG+AGG | 0.624956 | 4.4:+74252745 | None:intergenic |
| CTTCCAAATTCTCCAACAGA+GGG | 0.627135 | 4.4:+74256850 | None:intergenic |
| ACAGACAACCAATGAGAGTG+AGG | 0.631032 | 4.4:-74252242 | MS.gene48838:CDS |
| TTCAAGTAACCAAGACCAAG+TGG | 0.631930 | 4.4:-74252458 | MS.gene48838:CDS |
| GCCGATCTATGTGATAAGTG+CGG | 0.642160 | 4.4:-74259472 | MS.gene48838:CDS |
| CTCCTGCCGAAGGACGAGGA+AGG | 0.643593 | 4.4:-74256525 | MS.gene48838:CDS |
| CTAGACGCCAATAGAAGTGG+AGG | 0.644014 | 4.4:+74256643 | None:intergenic |
| CAGCTTGAAATACTTGACAC+TGG | 0.646808 | 4.4:-74257596 | MS.gene48838:CDS |
| TTGAAGCAACACATCCACAA+TGG | 0.648024 | 4.4:+74257624 | None:intergenic |
| GTAATTCTGGGCCAATATCG+CGG | 0.648517 | 4.4:+74256490 | None:intergenic |
| TATTTGTGGTACGATCTACT+GGG | 0.648538 | 4.4:-74254325 | MS.gene48838:intron |
| TCTGTATCCAGCCACCAAGT+GGG | 0.649632 | 4.4:-74252714 | MS.gene48838:CDS |
| GGTTCGGAGAATGAAGCAAG+AGG | 0.650245 | 4.4:-74252496 | MS.gene48838:CDS |
| CCGCCACCGAATCGACGTAG+AGG | 0.651077 | 4.4:+74259525 | None:intergenic |
| GCCAAGTGTTGTCATGATCG+AGG | 0.651574 | 4.4:-74254842 | MS.gene48838:CDS |
| AGTTGCATAGACTGAATACA+GGG | 0.651610 | 4.4:+74255950 | None:intergenic |
| ACTGGAGCTGAAACTTACTT+GGG | 0.656896 | 4.4:-74254905 | MS.gene48838:CDS |
| TTTCCCAGATACGTATAGCA+AGG | 0.657040 | 4.4:-74256549 | MS.gene48838:CDS |
| AACTGGAGTTAAATGTCGAG+AGG | 0.658373 | 4.4:+74252522 | None:intergenic |
| CTTAGAAGGAAACACAGGCA+TGG | 0.658844 | 4.4:-74256572 | MS.gene48838:CDS |
| CCAGGCTTAGAAGGAAACAC+AGG | 0.660663 | 4.4:-74256577 | MS.gene48838:CDS |
| GCTAACCAATTAAATGTGAG+GGG | 0.663001 | 4.4:-74256979 | MS.gene48838:CDS |
| CAAGTGGCTGATGCTGCCAA+GGG | 0.663194 | 4.4:-74252442 | MS.gene48838:CDS |
| ACCACAGGATAAGTGAGCAG+TGG | 0.664291 | 4.4:-74254165 | MS.gene48838:intron |
| GAACCTCTACGTCGATTCGG+TGG | 0.665625 | 4.4:-74259528 | MS.gene48838:CDS |
| CTGAGGGGAAACTTATAATG+GGG | 0.667153 | 4.4:-74255348 | MS.gene48838:CDS |
| TCAGCAATCATGGAGGACCA+AGG | 0.667770 | 4.4:-74252566 | MS.gene48838:CDS |
| TCTGCATGACAGTTAAACGC+CGG | 0.670607 | 4.4:-74252657 | MS.gene48838:CDS |
| TTTAGCCGTATGGACCCTGA+GGG | 0.672269 | 4.4:-74255364 | MS.gene48838:CDS |
| AAAGGGATTTGGCAAAGGAG+CGG | 0.674141 | 4.4:+74256708 | None:intergenic |
| GTTCGGAGAATGAAGCAAGA+GGG | 0.686630 | 4.4:-74252495 | MS.gene48838:CDS |
| CAGACAACCAATGAGAGTGA+GGG | 0.686644 | 4.4:-74252241 | MS.gene48838:CDS |
| ATTTAGCCGTATGGACCCTG+AGG | 0.687200 | 4.4:-74255365 | MS.gene48838:CDS |
| TGATGCTTTAGCAAATGCTG+CGG | 0.695273 | 4.4:-74252827 | MS.gene48838:CDS |
| TTGCATAGACTGAATACAGG+GGG | 0.707100 | 4.4:+74255952 | None:intergenic |
| TGGAGAGAGTGTACTTCATG+TGG | 0.711681 | 4.4:-74257747 | MS.gene48838:CDS |
| CAGACAATACAGGAGCACCC+AGG | 0.725333 | 4.4:+74252733 | None:intergenic |
| CTTGAAATACTTGACACTGG+TGG | 0.733966 | 4.4:-74257593 | MS.gene48838:CDS |
| TTAGCCGTATGGACCCTGAG+GGG | 0.752430 | 4.4:-74255363 | MS.gene48838:CDS |
| GTTGCATAGACTGAATACAG+GGG | 0.770443 | 4.4:+74255951 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 74252135 | 74259584 | 74252135 | ID=MS.gene48838 |
| chr4.4 | mRNA | 74252135 | 74259584 | 74252135 | ID=MS.gene48838.t1;Parent=MS.gene48838 |
| chr4.4 | exon | 74259472 | 74259584 | 74259472 | ID=MS.gene48838.t1.exon1;Parent=MS.gene48838.t1 |
| chr4.4 | CDS | 74259472 | 74259584 | 74259472 | ID=cds.MS.gene48838.t1;Parent=MS.gene48838.t1 |
| chr4.4 | exon | 74257743 | 74257824 | 74257743 | ID=MS.gene48838.t1.exon2;Parent=MS.gene48838.t1 |
| chr4.4 | CDS | 74257743 | 74257824 | 74257743 | ID=cds.MS.gene48838.t1;Parent=MS.gene48838.t1 |
| chr4.4 | exon | 74257550 | 74257651 | 74257550 | ID=MS.gene48838.t1.exon3;Parent=MS.gene48838.t1 |
| chr4.4 | CDS | 74257550 | 74257651 | 74257550 | ID=cds.MS.gene48838.t1;Parent=MS.gene48838.t1 |
| chr4.4 | exon | 74256460 | 74257079 | 74256460 | ID=MS.gene48838.t1.exon4;Parent=MS.gene48838.t1 |
| chr4.4 | CDS | 74256460 | 74257079 | 74256460 | ID=cds.MS.gene48838.t1;Parent=MS.gene48838.t1 |
| chr4.4 | exon | 74256222 | 74256318 | 74256222 | ID=MS.gene48838.t1.exon5;Parent=MS.gene48838.t1 |
| chr4.4 | CDS | 74256222 | 74256318 | 74256222 | ID=cds.MS.gene48838.t1;Parent=MS.gene48838.t1 |
| chr4.4 | exon | 74255933 | 74256107 | 74255933 | ID=MS.gene48838.t1.exon6;Parent=MS.gene48838.t1 |
| chr4.4 | CDS | 74255933 | 74256107 | 74255933 | ID=cds.MS.gene48838.t1;Parent=MS.gene48838.t1 |
| chr4.4 | exon | 74255315 | 74255391 | 74255315 | ID=MS.gene48838.t1.exon7;Parent=MS.gene48838.t1 |
| chr4.4 | CDS | 74255315 | 74255391 | 74255315 | ID=cds.MS.gene48838.t1;Parent=MS.gene48838.t1 |
| chr4.4 | exon | 74254819 | 74255244 | 74254819 | ID=MS.gene48838.t1.exon8;Parent=MS.gene48838.t1 |
| chr4.4 | CDS | 74254819 | 74255244 | 74254819 | ID=cds.MS.gene48838.t1;Parent=MS.gene48838.t1 |
| chr4.4 | exon | 74254326 | 74254375 | 74254326 | ID=MS.gene48838.t1.exon9;Parent=MS.gene48838.t1 |
| chr4.4 | CDS | 74254326 | 74254375 | 74254326 | ID=cds.MS.gene48838.t1;Parent=MS.gene48838.t1 |
| chr4.4 | exon | 74254067 | 74254180 | 74254067 | ID=MS.gene48838.t1.exon10;Parent=MS.gene48838.t1 |
| chr4.4 | CDS | 74254067 | 74254180 | 74254067 | ID=cds.MS.gene48838.t1;Parent=MS.gene48838.t1 |
| chr4.4 | exon | 74253917 | 74253984 | 74253917 | ID=MS.gene48838.t1.exon11;Parent=MS.gene48838.t1 |
| chr4.4 | CDS | 74253917 | 74253984 | 74253917 | ID=cds.MS.gene48838.t1;Parent=MS.gene48838.t1 |
| chr4.4 | exon | 74252135 | 74252916 | 74252135 | ID=MS.gene48838.t1.exon12;Parent=MS.gene48838.t1 |
| chr4.4 | CDS | 74252135 | 74252916 | 74252135 | ID=cds.MS.gene48838.t1;Parent=MS.gene48838.t1 |
| Gene Sequence |
| Protein sequence |
