Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49788.t1 | XP_003618951.1 | 100 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 2.60E-130 | 474.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49788.t1 | Q9FK59 | 82.0 | 205 | 35 | 1 | 24 | 226 | 17 | 221 | 1.6e-99 | 363.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49788.t1 | G7KPL2 | 100.0 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 1.9e-130 | 474.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073893 | MS.gene49788 | PPI |
| MS.gene053448 | MS.gene49788 | PPI |
| MS.gene53524 | MS.gene49788 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49788.t1 | MTR_6g029230 | 100.000 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 1.99e-172 | 473 |
| MS.gene49788.t1 | MTR_2g018260 | 37.736 | 159 | 97 | 1 | 40 | 196 | 40 | 198 | 8.77e-37 | 129 |
| MS.gene49788.t1 | MTR_1g045130 | 35.211 | 142 | 91 | 1 | 48 | 188 | 31 | 172 | 1.40e-29 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49788.t1 | AT5G18110 | 81.951 | 205 | 35 | 1 | 24 | 226 | 17 | 221 | 1.80e-126 | 357 |
| MS.gene49788.t1 | AT4G18040 | 38.255 | 149 | 92 | 0 | 48 | 196 | 60 | 208 | 2.44e-34 | 123 |
| MS.gene49788.t1 | AT1G29550 | 34.899 | 149 | 97 | 0 | 48 | 196 | 65 | 213 | 4.79e-28 | 106 |
| MS.gene49788.t1 | AT1G29590 | 33.557 | 149 | 99 | 0 | 48 | 196 | 65 | 213 | 1.58e-27 | 105 |
| MS.gene49788.t1 | AT5G35620 | 30.601 | 183 | 118 | 4 | 37 | 214 | 15 | 193 | 1.53e-24 | 96.7 |
| MS.gene49788.t1 | AT5G35620 | 30.601 | 183 | 118 | 4 | 37 | 214 | 15 | 193 | 1.53e-24 | 96.7 |
| MS.gene49788.t1 | AT5G35620 | 31.613 | 155 | 99 | 3 | 37 | 186 | 15 | 167 | 2.46e-23 | 92.4 |
Find 46 sgRNAs with CRISPR-Local
Find 434 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATAGGTTGAAGGATTT+TGG | 0.117111 | 6.3:-20312561 | MS.gene49788:intron |
| AAGAAGGAATTCGTCCTTTA+TGG | 0.144383 | 6.3:-20312474 | MS.gene49788:CDS |
| ATCAGAGCAAATTTGTGTTT+TGG | 0.293172 | 6.3:-20312735 | MS.gene49788:intron |
| CTAACTGCAATGGTGGAAAA+TGG | 0.299336 | 6.3:-20312299 | MS.gene49788:CDS |
| TGCGAGACAATTCATCTTAC+AGG | 0.303636 | 6.3:-20309205 | MS.gene49788:CDS |
| GTGGGTGACCAACTTGATTA+TGG | 0.322874 | 6.3:-20309489 | MS.gene49788:CDS |
| TATGATTGGTTTCGAATTCC+AGG | 0.339307 | 6.3:+20312697 | None:intergenic |
| ATGGATTATACGATTCAAAA+AGG | 0.339986 | 6.3:-20312280 | MS.gene49788:CDS |
| AATCAGAGGAATCGACAATT+TGG | 0.345426 | 6.3:+20314892 | None:intergenic |
| AGCTGGTCTTCACCCTCTTA+AGG | 0.366017 | 6.3:-20314823 | MS.gene49788:intron |
| GCTTCCTCACGGCTATGTTA+TGG | 0.396161 | 6.3:-20309252 | MS.gene49788:CDS |
| AGAAGGAATTCGTCCTTTAT+GGG | 0.402768 | 6.3:-20312473 | MS.gene49788:CDS |
| TAATGTTATCCTCGTATGAT+TGG | 0.409837 | 6.3:+20312683 | None:intergenic |
| AGATGCAAATCTGTTGGAAT+AGG | 0.415770 | 6.3:+20312502 | None:intergenic |
| TTGAAAAGATGCAAATCTGT+TGG | 0.417946 | 6.3:+20312496 | None:intergenic |
| AATGCAGGTGCTTGCCTTGG+TGG | 0.418746 | 6.3:-20309508 | MS.gene49788:intron |
| CATAGCCGTGAGGAAGCTTT+AGG | 0.427935 | 6.3:+20309258 | None:intergenic |
| TTCACGAGATTGTCGTTCTT+CGG | 0.440058 | 6.3:+20314851 | None:intergenic |
| TCGCAATGCCTCTGATCATC+AGG | 0.442213 | 6.3:-20309403 | MS.gene49788:intron |
| GTTATTCACGCAGGCTGTAA+TGG | 0.458580 | 6.3:-20309306 | MS.gene49788:intron |
| TAAGTATCTACCTCCCATAA+AGG | 0.467917 | 6.3:+20312460 | None:intergenic |
| ACGAGGACATAGTCAGTGTC+TGG | 0.468461 | 6.3:-20309428 | MS.gene49788:CDS |
| TGGTACACTCGTCGGGTACC+TGG | 0.476680 | 6.3:-20312715 | MS.gene49788:CDS |
| TGTGTTTGAAGAACCTTAAG+AGG | 0.482480 | 6.3:+20314810 | None:intergenic |
| CCAAATGCAGGTGCTTGCCT+TGG | 0.504330 | 6.3:-20309511 | MS.gene49788:intron |
| GATTATGGTGATAACATTTG+TGG | 0.512568 | 6.3:-20309474 | MS.gene49788:CDS |
| GACTCTGCTAACTGCAATGG+TGG | 0.541849 | 6.3:-20312306 | MS.gene49788:CDS |
| TACAGGAACACTTGGTTGAG+AGG | 0.543267 | 6.3:-20309188 | MS.gene49788:CDS |
| TGTTATCACCATAATCAAGT+TGG | 0.545176 | 6.3:+20309481 | None:intergenic |
| ATGCAGGTGCTTGCCTTGGT+GGG | 0.546695 | 6.3:-20309507 | MS.gene49788:intron |
| ATTCATCTTACAGGAACACT+TGG | 0.548432 | 6.3:-20309196 | MS.gene49788:CDS |
| GAAGATTGTTGAATTCAGTA+CGG | 0.555167 | 6.3:-20312659 | MS.gene49788:intron |
| TTTGACGTTGTAAGAATCAG+AGG | 0.556549 | 6.3:+20314878 | None:intergenic |
| CAATCTCGTGAACTCAAAGC+TGG | 0.583315 | 6.3:-20314840 | MS.gene49788:CDS |
| GTTGGAATAGGCAAAGAAGA+AGG | 0.590955 | 6.3:+20312514 | None:intergenic |
| GTGTTTGAAGAACCTTAAGA+GGG | 0.610079 | 6.3:+20314811 | None:intergenic |
| AAGAAGAAGGACGAGCAAGA+TGG | 0.610167 | 6.3:+20312527 | None:intergenic |
| AAGGACTCTGCTAACTGCAA+TGG | 0.616200 | 6.3:-20312309 | MS.gene49788:CDS |
| ATCAAGTTGGTCACCCACCA+AGG | 0.619024 | 6.3:+20309494 | None:intergenic |
| AGGAATTCGTCCTTTATGGG+AGG | 0.639812 | 6.3:-20312470 | MS.gene49788:intron |
| GATGCCAACCTGATGATCAG+AGG | 0.659266 | 6.3:+20309395 | None:intergenic |
| CGTCACCTAAAGCTTCCTCA+CGG | 0.680757 | 6.3:-20309263 | MS.gene49788:CDS |
| TCTCGCAGAGAAGCATCATG+CGG | 0.719756 | 6.3:+20309221 | None:intergenic |
| AATTCGAAACCAATCATACG+AGG | 0.732933 | 6.3:-20312692 | MS.gene49788:CDS |
| TACTCCATAACATAGCCGTG+AGG | 0.757014 | 6.3:+20309248 | None:intergenic |
| ACTAAGCATTCGATTCAACG+AGG | 0.817685 | 6.3:-20309445 | MS.gene49788:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAAAAAAATTA+GGG | + | chr6.3:20309355-20309374 | None:intergenic | 0.0% |
| !! | TTAATAATAATAAAAAAATT+AGG | + | chr6.3:20309356-20309375 | None:intergenic | 0.0% |
| !! | ATCATTCATAAAATAATATA+TGG | + | chr6.3:20310884-20310903 | None:intergenic | 10.0% |
| !! | TTATTTATTTATGTTAGTTA+TGG | - | chr6.3:20314478-20314497 | MS.gene49788:intron | 10.0% |
| !!! | AAAATTATGACTTTATTTAT+AGG | - | chr6.3:20309612-20309631 | MS.gene49788:intron | 10.0% |
| !!! | TCAATTATTAATTTTTATTG+AGG | - | chr6.3:20309425-20309444 | MS.gene49788:CDS | 10.0% |
| !!! | TTATTAATTTGTTTTTTGTT+AGG | - | chr6.3:20309369-20309388 | MS.gene49788:intron | 10.0% |
| !! | AAAATTTCCCTAATTATTAT+TGG | + | chr6.3:20313160-20313179 | None:intergenic | 15.0% |
| !! | AAATTTCCCTAATTATTATT+GGG | + | chr6.3:20313159-20313178 | None:intergenic | 15.0% |
| !! | AATTGTGACTTTATTATATA+TGG | - | chr6.3:20309805-20309824 | MS.gene49788:intron | 15.0% |
| !! | ATTGTGACTTTATTATATAT+GGG | - | chr6.3:20309806-20309825 | MS.gene49788:intron | 15.0% |
| !! | CAAAATATTAAGTCATATTT+CGG | + | chr6.3:20311034-20311053 | None:intergenic | 15.0% |
| !! | CTTAATCATAATTATCTTAA+CGG | + | chr6.3:20313432-20313451 | None:intergenic | 15.0% |
| !! | TTAAGATAAAAATGTAGTAT+AGG | - | chr6.3:20312480-20312499 | MS.gene49788:CDS | 15.0% |
| !! | TTATTATATATGGGATTTAA+GGG | - | chr6.3:20309815-20309834 | MS.gene49788:intron | 15.0% |
| !! | TTTATTATATATGGGATTTA+AGG | - | chr6.3:20309814-20309833 | MS.gene49788:intron | 15.0% |
| !! | TTTATTTATAGGATTTAAGA+GGG | - | chr6.3:20309623-20309642 | MS.gene49788:intron | 15.0% |
| !!! | AAAAATGTTGACTTTATATA+TGG | - | chr6.3:20309453-20309472 | MS.gene49788:CDS | 15.0% |
| !!! | AAAATGTTGACTTTATATAT+GGG | - | chr6.3:20309454-20309473 | MS.gene49788:CDS | 15.0% |
| !!! | ATTAAGTTTTAATGTTGTTA+TGG | - | chr6.3:20313446-20313465 | MS.gene49788:intron | 15.0% |
| !!! | TAAAAATATGTTTTTGTCTT+CGG | + | chr6.3:20312239-20312258 | None:intergenic | 15.0% |
| !!! | TAATTAAGATAATTGGTAAT+TGG | + | chr6.3:20313408-20313427 | None:intergenic | 15.0% |
| !!! | TATGAATTTTTAAATTTGGT+AGG | - | chr6.3:20313600-20313619 | MS.gene49788:intron | 15.0% |
| !!! | TGAAGTTTTTATTTTAGTTT+TGG | - | chr6.3:20311187-20311206 | MS.gene49788:intron | 15.0% |
| !!! | TGACAATTATTTTTGTTAAT+AGG | - | chr6.3:20311563-20311582 | MS.gene49788:intron | 15.0% |
| !! | AAATTAAAAACAGAGCAAAA+AGG | + | chr6.3:20314459-20314478 | None:intergenic | 20.0% |
| !! | AAATTTCACTAAAAGATCAA+TGG | + | chr6.3:20313830-20313849 | None:intergenic | 20.0% |
| !! | AGTGAAATTAAATTAGAACT+GGG | - | chr6.3:20309840-20309859 | MS.gene49788:intron | 20.0% |
| !! | ATATCTTCCCAATAATAATT+AGG | - | chr6.3:20313149-20313168 | MS.gene49788:intron | 20.0% |
| !! | ATATTGTTATGACCTTTATT+TGG | - | chr6.3:20314405-20314424 | MS.gene49788:intron | 20.0% |
| !! | ATGTATATTGCACAAAAAAT+AGG | + | chr6.3:20312685-20312704 | None:intergenic | 20.0% |
| !! | ATGTCAATGAGTTAATATTA+AGG | + | chr6.3:20310407-20310426 | None:intergenic | 20.0% |
| !! | ATTAACATATATATGATGCA+TGG | + | chr6.3:20312752-20312771 | None:intergenic | 20.0% |
| !! | CATCATAAATGAATAATTCA+GGG | + | chr6.3:20312297-20312316 | None:intergenic | 20.0% |
| !! | CTTAAACATGTTATAGTTAT+AGG | - | chr6.3:20309660-20309679 | MS.gene49788:intron | 20.0% |
| !! | CTTAATGCTTGAATATTATT+GGG | - | chr6.3:20311290-20311309 | MS.gene49788:intron | 20.0% |
| !! | GAAGATATTCAATAATCAAT+GGG | + | chr6.3:20313137-20313156 | None:intergenic | 20.0% |
| !! | TAACGGTTAATTAAGATAAT+TGG | + | chr6.3:20313415-20313434 | None:intergenic | 20.0% |
| !! | TAGTGAAATTAAATTAGAAC+TGG | - | chr6.3:20309839-20309858 | MS.gene49788:intron | 20.0% |
| !! | TATATATGTTAATGCTATCA+TGG | - | chr6.3:20312759-20312778 | MS.gene49788:intron | 20.0% |
| !! | TATCTTCCCAATAATAATTA+GGG | - | chr6.3:20313150-20313169 | MS.gene49788:intron | 20.0% |
| !! | TATTATATATGGGATTTAAG+GGG | - | chr6.3:20309816-20309835 | MS.gene49788:intron | 20.0% |
| !! | TCTTAATGCTTGAATATTAT+TGG | - | chr6.3:20311289-20311308 | MS.gene49788:intron | 20.0% |
| !! | TTAATATTACATAGCATTCA+TGG | + | chr6.3:20313708-20313727 | None:intergenic | 20.0% |
| !! | TTTAATGATAGGATTTGAAA+CGG | + | chr6.3:20313114-20313133 | None:intergenic | 20.0% |
| !! | TTTATATATGGGATTTATGT+GGG | - | chr6.3:20309465-20309484 | MS.gene49788:CDS | 20.0% |
| !! | TTTGGAAGTTAACATAAAAA+AGG | - | chr6.3:20314355-20314374 | MS.gene49788:intron | 20.0% |
| !!! | AAATGGTTTTACACAAAATT+TGG | - | chr6.3:20312023-20312042 | MS.gene49788:intron | 20.0% |
| !!! | CTTTATTTATAGGATTTAAG+AGG | - | chr6.3:20309622-20309641 | MS.gene49788:intron | 20.0% |
| !!! | TATTTTAGTTTTGGATGAAT+TGG | - | chr6.3:20311196-20311215 | MS.gene49788:intron | 20.0% |
| !!! | TATTTTTGTTAATAGGTTGA+AGG | - | chr6.3:20311570-20311589 | MS.gene49788:intron | 20.0% |
| !!! | TTAGTGAAAATATTTTCATG+AGG | - | chr6.3:20311911-20311930 | MS.gene49788:intron | 20.0% |
| !!! | TTCAACAAAAAAGAAGATTT+TGG | - | chr6.3:20310266-20310285 | MS.gene49788:intron | 20.0% |
| !!! | TTTTTGTGCAATATACATTT+TGG | - | chr6.3:20312687-20312706 | MS.gene49788:CDS | 20.0% |
| !!! | TTTTTTGAAAGTAAGAATGA+AGG | + | chr6.3:20313303-20313322 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGACTTTCTGATT+GGG | + | chr6.3:20313063-20313082 | None:intergenic | 20.0% |
| ! | AAAATAGAGGCTAATAATGA+AGG | + | chr6.3:20313337-20313356 | None:intergenic | 25.0% |
| ! | AACTACAAAATGGATCTAAA+TGG | + | chr6.3:20310043-20310062 | None:intergenic | 25.0% |
| ! | AAGGGTTGAATATAAAATAG+AGG | + | chr6.3:20313350-20313369 | None:intergenic | 25.0% |
| ! | AATAACCAGGAATGTTATTA+AGG | + | chr6.3:20314818-20314837 | None:intergenic | 25.0% |
| ! | ATAAAAAAGGAAAACTGTCA+TGG | - | chr6.3:20314368-20314387 | MS.gene49788:intron | 25.0% |
| ! | CAAAATTGTACATGGAAATT+AGG | - | chr6.3:20310095-20310114 | MS.gene49788:intron | 25.0% |
| ! | CAATATAATAATCCAACCTA+TGG | + | chr6.3:20310322-20310341 | None:intergenic | 25.0% |
| ! | CGAATAGATTCTTAAAAGTT+GGG | - | chr6.3:20309728-20309747 | MS.gene49788:intron | 25.0% |
| ! | CTAGAATATATAAACTGGAA+TGG | + | chr6.3:20312266-20312285 | None:intergenic | 25.0% |
| ! | CTTTATATATGGGATTTATG+TGG | - | chr6.3:20309464-20309483 | MS.gene49788:CDS | 25.0% |
| ! | GCATCATAAATGAATAATTC+AGG | + | chr6.3:20312298-20312317 | None:intergenic | 25.0% |
| ! | GCCATATGAATATATAAATC+AGG | + | chr6.3:20312320-20312339 | None:intergenic | 25.0% |
| ! | GCCTGATTTATATATTCATA+TGG | - | chr6.3:20312316-20312335 | MS.gene49788:intron | 25.0% |
| ! | GGAAGATATTCAATAATCAA+TGG | + | chr6.3:20313138-20313157 | None:intergenic | 25.0% |
| ! | TAAAGAAATCAGCAGTTTAT+TGG | - | chr6.3:20310374-20310393 | MS.gene49788:intron | 25.0% |
| ! | TAATAACTCCAACAATACAT+TGG | + | chr6.3:20313743-20313762 | None:intergenic | 25.0% |
| ! | TCAACAAACAACACAAATAA+AGG | + | chr6.3:20312552-20312571 | None:intergenic | 25.0% |
| ! | TGGTTAAAGTAACTACAAAA+TGG | + | chr6.3:20310053-20310072 | None:intergenic | 25.0% |
| ! | TTCCAAAAATACAGATATAC+CGG | - | chr6.3:20313000-20313019 | MS.gene49788:intron | 25.0% |
| ! | TTGATTTAATCTGATGTGTT+GGG | - | chr6.3:20310175-20310194 | MS.gene49788:intron | 25.0% |
| !! | AAGATGTTTGATGATTGTAT+TGG | - | chr6.3:20311503-20311522 | MS.gene49788:intron | 25.0% |
| !! | ACATTTCTGTTGTTTATTGT+TGG | - | chr6.3:20314575-20314594 | MS.gene49788:intron | 25.0% |
| !! | ATGGATTATACGATTCAAAA+AGG | - | chr6.3:20311858-20311877 | MS.gene49788:intron | 25.0% |
| !! | CATTAATTTTAAACGTCTTC+TGG | - | chr6.3:20313886-20313905 | MS.gene49788:intron | 25.0% |
| !! | GTAATAATTTGAGATAATGG+AGG | + | chr6.3:20310668-20310687 | None:intergenic | 25.0% |
| !! | GTTTAAAATTAATGAAGACC+AGG | + | chr6.3:20313880-20313899 | None:intergenic | 25.0% |
| !! | TAATCAATGGGTTTAATGAT+AGG | + | chr6.3:20313125-20313144 | None:intergenic | 25.0% |
| !! | TTGATGATTGTATTGGATTT+AGG | - | chr6.3:20311510-20311529 | MS.gene49788:intron | 25.0% |
| !! | TTGTTATTACTCTTTGAAGA+TGG | - | chr6.3:20310829-20310848 | MS.gene49788:intron | 25.0% |
| !! | TTTGATTTAATCTGATGTGT+TGG | - | chr6.3:20310174-20310193 | MS.gene49788:intron | 25.0% |
| !! | TTTTCAGTAACTTCATATAG+AGG | + | chr6.3:20312425-20312444 | None:intergenic | 25.0% |
| !!! | AATGATCAAGTTGAAAGTTT+TGG | - | chr6.3:20310442-20310461 | MS.gene49788:intron | 25.0% |
| !!! | ACACTCTAGAATATATAAAC+TGG | + | chr6.3:20312271-20312290 | None:intergenic | 25.0% |
| !!! | ATGATCAAGTTGAAAGTTTT+GGG | - | chr6.3:20310443-20310462 | MS.gene49788:intron | 25.0% |
| !!! | CAGAAATGTAATTTTAATCC+AGG | + | chr6.3:20314564-20314583 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTGACTTTCTGAT+TGG | + | chr6.3:20313064-20313083 | None:intergenic | 25.0% |
| !!! | TAGGAACATTTTTTATGTGT+GGG | - | chr6.3:20309754-20309773 | MS.gene49788:intron | 25.0% |
| !!! | TTAATAGGTTGAAGGATTTT+GGG | - | chr6.3:20311578-20311597 | MS.gene49788:intron | 25.0% |
| !!! | TTATTTGTGTTGTTTGTTGA+AGG | - | chr6.3:20312552-20312571 | MS.gene49788:CDS | 25.0% |
| !!! | TTCAAATTTGTTGCTCTAAA+TGG | - | chr6.3:20312006-20312025 | MS.gene49788:intron | 25.0% |
| !!! | TTGACCAAATGGAATTTTTT+GGG | - | chr6.3:20310988-20311007 | MS.gene49788:intron | 25.0% |
| !!! | TTTTGGTTGATTTATTGTGT+TGG | - | chr6.3:20311369-20311388 | MS.gene49788:intron | 25.0% |
| AACAACTTCTAACTGCTTAT+TGG | - | chr6.3:20314282-20314301 | MS.gene49788:intron | 30.0% | |
| AACCATAGATCAGATTTAAC+AGG | - | chr6.3:20310068-20310087 | MS.gene49788:intron | 30.0% | |
| AACGGTTTAAGAGATTAAGA+AGG | + | chr6.3:20313096-20313115 | None:intergenic | 30.0% | |
| AACTTCAAAAGTCAAATTGC+AGG | + | chr6.3:20311174-20311193 | None:intergenic | 30.0% | |
| AATGCTTGAATATTATTGGG+CGG | - | chr6.3:20311293-20311312 | MS.gene49788:intron | 30.0% | |
| ACCATAGATCAGATTTAACA+GGG | - | chr6.3:20310069-20310088 | MS.gene49788:intron | 30.0% | |
| ACCCACAATCCAAAATATTA+AGG | + | chr6.3:20310808-20310827 | None:intergenic | 30.0% | |
| ACGGTTTAAGAGATTAAGAA+GGG | + | chr6.3:20313095-20313114 | None:intergenic | 30.0% | |
| AGAGATACAACAAAGTTTAG+TGG | - | chr6.3:20310921-20310940 | MS.gene49788:intron | 30.0% | |
| ATAGATACAGACACAACTAA+CGG | + | chr6.3:20310691-20310710 | None:intergenic | 30.0% | |
| ATTAACTCATTGACATGTTG+AGG | - | chr6.3:20310411-20310430 | MS.gene49788:intron | 30.0% | |
| ATTCTTAAAAGTTGGGAAGT+AGG | - | chr6.3:20309735-20309754 | MS.gene49788:intron | 30.0% | |
| ATTTATGAGTTGTTCTGTTC+TGG | - | chr6.3:20311739-20311758 | MS.gene49788:intron | 30.0% | |
| CAAAATATTAAGGCAGACTT+TGG | + | chr6.3:20310798-20310817 | None:intergenic | 30.0% | |
| CAGTAAAAAAAAAAGTTGCC+TGG | - | chr6.3:20313859-20313878 | MS.gene49788:intron | 30.0% | |
| CGAATATTCTATCATTGACA+TGG | + | chr6.3:20312151-20312170 | None:intergenic | 30.0% | |
| CTATGAAACTTAATGTGTTG+GGG | - | chr6.3:20309929-20309948 | MS.gene49788:intron | 30.0% | |
| CTATGAATATGGAATTGCAT+TGG | + | chr6.3:20313212-20313231 | None:intergenic | 30.0% | |
| CTGCAATTTAATGACCAAAT+TGG | - | chr6.3:20310742-20310761 | MS.gene49788:intron | 30.0% | |
| CTTCACTAATGACTAAACAA+CGG | + | chr6.3:20314096-20314115 | None:intergenic | 30.0% | |
| GAAGATTGTTGAATTCAGTA+CGG | - | chr6.3:20311479-20311498 | MS.gene49788:intron | 30.0% | |
| GAGAGATTACAAATGGTAAT+TGG | + | chr6.3:20314509-20314528 | None:intergenic | 30.0% | |
| GAGATACAACAAAGTTTAGT+GGG | - | chr6.3:20310922-20310941 | MS.gene49788:intron | 30.0% | |
| GATTATGGTGATAACATTTG+TGG | - | chr6.3:20314664-20314683 | MS.gene49788:intron | 30.0% | |
| GCGAATAGATTCTTAAAAGT+TGG | - | chr6.3:20309727-20309746 | MS.gene49788:intron | 30.0% | |
| GCTATGAAACTTAATGTGTT+GGG | - | chr6.3:20309928-20309947 | MS.gene49788:intron | 30.0% | |
| GGTAGAAGACTGATTAAATA+AGG | + | chr6.3:20313258-20313277 | None:intergenic | 30.0% | |
| GGTGATGAGATTAAGATTTA+GGG | - | chr6.3:20311095-20311114 | MS.gene49788:intron | 30.0% | |
| TAATGTTATCCTCGTATGAT+TGG | + | chr6.3:20311458-20311477 | None:intergenic | 30.0% | |
| TATGTAACTACTACATGAGT+CGG | + | chr6.3:20310641-20310660 | None:intergenic | 30.0% | |
| TATGTTAACTTCCAAAGAAC+CGG | + | chr6.3:20314351-20314370 | None:intergenic | 30.0% | |
| TATTATTTCATGCCAAATGC+AGG | - | chr6.3:20314615-20314634 | MS.gene49788:intron | 30.0% | |
| TCCAAAAATACAGATATACC+GGG | - | chr6.3:20313001-20313020 | MS.gene49788:intron | 30.0% | |
| TGATTTAATCTGATGTGTTG+GGG | - | chr6.3:20310176-20310195 | MS.gene49788:intron | 30.0% | |
| TGCTATGAAACTTAATGTGT+TGG | - | chr6.3:20309927-20309946 | MS.gene49788:intron | 30.0% | |
| TGGCTTATGTTTCAATTTCA+TGG | - | chr6.3:20311708-20311727 | MS.gene49788:intron | 30.0% | |
| TGGTGAAAGAAACTACAAAA+TGG | + | chr6.3:20310302-20310321 | None:intergenic | 30.0% | |
| TGTTATCACCATAATCAAGT+TGG | + | chr6.3:20314660-20314679 | None:intergenic | 30.0% | |
| TTAAATAAGGAACGTAAGAG+AGG | + | chr6.3:20313245-20313264 | None:intergenic | 30.0% | |
| TTCAATAAACCCATGAATCA+TGG | - | chr6.3:20313179-20313198 | MS.gene49788:intron | 30.0% | |
| TTGAAAAGATGCAAATCTGT+TGG | + | chr6.3:20311645-20311664 | None:intergenic | 30.0% | |
| TTTAGATCAACAAAATCACG+TGG | + | chr6.3:20314434-20314453 | None:intergenic | 30.0% | |
| TTTGTAGTTTCTTTCACCAT+AGG | - | chr6.3:20310303-20310322 | MS.gene49788:intron | 30.0% | |
| TTTGTCTTCGGTTTCAATTA+TGG | + | chr6.3:20312227-20312246 | None:intergenic | 30.0% | |
| ! | AAAGTCAAATTGCAGGATTT+TGG | + | chr6.3:20311167-20311186 | None:intergenic | 30.0% |
| ! | AAGTCAAATTGCAGGATTTT+GGG | + | chr6.3:20311166-20311185 | None:intergenic | 30.0% |
| ! | AATATGGAATTGCATTGGTA+AGG | + | chr6.3:20313207-20313226 | None:intergenic | 30.0% |
| ! | AATGACCAAATTGGATGTTT+TGG | - | chr6.3:20310751-20310770 | MS.gene49788:intron | 30.0% |
| ! | AGTGTTCTAAACAAATGAGA+GGG | + | chr6.3:20314238-20314257 | None:intergenic | 30.0% |
| ! | ATAGTCTAGTTTCTAAACTG+AGG | + | chr6.3:20314163-20314182 | None:intergenic | 30.0% |
| ! | ATCAGAGCAAATTTGTGTTT+TGG | - | chr6.3:20311403-20311422 | MS.gene49788:intron | 30.0% |
| ! | ATGACCAAATTGGATGTTTT+GGG | - | chr6.3:20310752-20310771 | MS.gene49788:intron | 30.0% |
| ! | CAAAGTCTGCCTTAATATTT+TGG | - | chr6.3:20310796-20310815 | MS.gene49788:intron | 30.0% |
| ! | CGGGTAATAATTTGAGATAA+TGG | + | chr6.3:20310671-20310690 | None:intergenic | 30.0% |
| ! | GATAATTGGTAATTGGTACT+TGG | + | chr6.3:20313401-20313420 | None:intergenic | 30.0% |
| ! | GATTTGCATCTTTTCAAAGA+AGG | - | chr6.3:20311648-20311667 | MS.gene49788:intron | 30.0% |
| ! | GTCTTCAACAAGTCTATTTT+TGG | - | chr6.3:20312645-20312664 | MS.gene49788:intron | 30.0% |
| ! | GTTGGGAAAATGTTTTTCTA+TGG | + | chr6.3:20312622-20312641 | None:intergenic | 30.0% |
| ! | TAGTGTTCTAAACAAATGAG+AGG | + | chr6.3:20314239-20314258 | None:intergenic | 30.0% |
| ! | TAGTTTTTACATTTCCTGTG+TGG | - | chr6.3:20314319-20314338 | MS.gene49788:intron | 30.0% |
| ! | TATTTGAAATCCTCATCCAT+AGG | - | chr6.3:20312173-20312192 | MS.gene49788:intron | 30.0% |
| ! | TGGTGATGAGATTAAGATTT+AGG | - | chr6.3:20311094-20311113 | MS.gene49788:intron | 30.0% |
| ! | TGTGCAATATACATTTTGGA+AGG | - | chr6.3:20312691-20312710 | MS.gene49788:CDS | 30.0% |
| ! | TTGGAAAATGAAGCACTAAT+CGG | + | chr6.3:20312986-20313005 | None:intergenic | 30.0% |
| !! | AATGAGATGTTTGCTGTATT+GGG | - | chr6.3:20311224-20311243 | MS.gene49788:intron | 30.0% |
| !! | ACTCGCAATTTTGACAAAAA+TGG | + | chr6.3:20313976-20313995 | None:intergenic | 30.0% |
| !! | GCCTTAATATTTTGGATTGT+GGG | - | chr6.3:20310804-20310823 | MS.gene49788:intron | 30.0% |
| !! | GTGCAATATACATTTTGGAA+GGG | - | chr6.3:20312692-20312711 | MS.gene49788:CDS | 30.0% |
| !! | GTTAATAGGTTGAAGGATTT+TGG | - | chr6.3:20311577-20311596 | MS.gene49788:intron | 30.0% |
| !! | TGCCTTAATATTTTGGATTG+TGG | - | chr6.3:20310803-20310822 | MS.gene49788:intron | 30.0% |
| !!! | AAAATTCGTTTTTTGCGAAC+CGG | + | chr6.3:20313040-20313059 | None:intergenic | 30.0% |
| !!! | AGGAACATTTTTTATGTGTG+GGG | - | chr6.3:20309755-20309774 | MS.gene49788:intron | 30.0% |
| !!! | GTAGGAACATTTTTTATGTG+TGG | - | chr6.3:20309753-20309772 | MS.gene49788:intron | 30.0% |
| !!! | GTTGACCAAATGGAATTTTT+TGG | - | chr6.3:20310987-20311006 | MS.gene49788:intron | 30.0% |
| !!! | TTACTGTGTGACTTTTTTGA+AGG | - | chr6.3:20311810-20311829 | MS.gene49788:intron | 30.0% |
| AAAAGCAGCCAATGTATTGT+TGG | - | chr6.3:20313732-20313751 | MS.gene49788:intron | 35.0% | |
| AAAATACAGATATACCGGGT+CGG | - | chr6.3:20313005-20313024 | MS.gene49788:intron | 35.0% | |
| AAAATTGCGAGTAACCTCAT+TGG | - | chr6.3:20313984-20314003 | MS.gene49788:intron | 35.0% | |
| AAGAAGGAATTCGTCCTTTA+TGG | - | chr6.3:20311664-20311683 | MS.gene49788:intron | 35.0% | |
| AATCAGAGGAATCGACAATT+TGG | + | chr6.3:20309249-20309268 | None:intergenic | 35.0% | |
| AATTCGAAACCAATCATACG+AGG | - | chr6.3:20311446-20311465 | MS.gene49788:intron | 35.0% | |
| ACAACCCAAAACATCCAATT+TGG | + | chr6.3:20310759-20310778 | None:intergenic | 35.0% | |
| ACACCTTAATTGTGGATAAG+TGG | + | chr6.3:20310225-20310244 | None:intergenic | 35.0% | |
| ACCAACTATGCTGTACTTAA+GGG | + | chr6.3:20310141-20310160 | None:intergenic | 35.0% | |
| ACCCTGTTAAATCTGATCTA+TGG | + | chr6.3:20310073-20310092 | None:intergenic | 35.0% | |
| ACCTTAATTGTGGATAAGTG+GGG | + | chr6.3:20310223-20310242 | None:intergenic | 35.0% | |
| ACCTTACATGTGAATAAGTC+AGG | + | chr6.3:20309976-20309995 | None:intergenic | 35.0% | |
| AGAAGGAATTCGTCCTTTAT+GGG | - | chr6.3:20311665-20311684 | MS.gene49788:intron | 35.0% | |
| AGAATCACACACCTTAATTG+TGG | + | chr6.3:20310233-20310252 | None:intergenic | 35.0% | |
| AGACAAACATTTCAGACCTA+TGG | + | chr6.3:20312192-20312211 | None:intergenic | 35.0% | |
| AGATGCAAATCTGTTGGAAT+AGG | + | chr6.3:20311639-20311658 | None:intergenic | 35.0% | |
| AGCACATCATCACACAAAAA+TGG | + | chr6.3:20310489-20310508 | None:intergenic | 35.0% | |
| AGGTAGATACTTAATGGCTT+TGG | - | chr6.3:20311688-20311707 | MS.gene49788:intron | 35.0% | |
| ATAAACTCCTGCAGTGATTA+CGG | - | chr6.3:20311950-20311969 | MS.gene49788:intron | 35.0% | |
| ATATAACGCACACACGTATA+GGG | + | chr6.3:20314777-20314796 | None:intergenic | 35.0% | |
| ATCAACTCATTGACATGTTG+AGG | - | chr6.3:20310956-20310975 | MS.gene49788:intron | 35.0% | |
| ATCACGTGGAAACCAAATAA+AGG | + | chr6.3:20314420-20314439 | None:intergenic | 35.0% | |
| ATCCTAAGCACTAATTCAAC+AGG | + | chr6.3:20314042-20314061 | None:intergenic | 35.0% | |
| ATGTATAGGACTTCTCTAAG+TGG | - | chr6.3:20314191-20314210 | MS.gene49788:intron | 35.0% | |
| ATTCATCTTACAGGAACACT+TGG | - | chr6.3:20314942-20314961 | MS.gene49788:CDS | 35.0% | |
| ATTTGAACCTGTTGATGTGA+TGG | - | chr6.3:20309496-20309515 | MS.gene49788:CDS | 35.0% | |
| CAAGCAAGAGAGATTACAAA+TGG | + | chr6.3:20314516-20314535 | None:intergenic | 35.0% | |
| CACCTTAATTGTGGATAAGT+GGG | + | chr6.3:20310224-20310243 | None:intergenic | 35.0% | |
| CAGGGTAACAAAATTGTACA+TGG | - | chr6.3:20310087-20310106 | MS.gene49788:intron | 35.0% | |
| CAGTAACTTCATATAGAGGA+GGG | + | chr6.3:20312421-20312440 | None:intergenic | 35.0% | |
| CATTTGTAATCTCTCTTGCT+TGG | - | chr6.3:20314514-20314533 | MS.gene49788:intron | 35.0% | |
| GAAAGTTCAGCTCAGTTTAT+TGG | - | chr6.3:20310522-20310541 | MS.gene49788:intron | 35.0% | |
| GAAGTTGAGTGCTATGAATA+TGG | + | chr6.3:20313223-20313242 | None:intergenic | 35.0% | |
| GAATCGGAAAATGGTAAGAA+CGG | - | chr6.3:20312861-20312880 | MS.gene49788:intron | 35.0% | |
| GAATTCGATCTCATCATCTA+TGG | - | chr6.3:20314538-20314557 | MS.gene49788:intron | 35.0% | |
| GACTATTCTACTCGATGTAT+AGG | - | chr6.3:20314177-20314196 | MS.gene49788:intron | 35.0% | |
| GCAACCCAAAAAATTCCATT+TGG | + | chr6.3:20310995-20311014 | None:intergenic | 35.0% | |
| GGTAGAACAGAACAAGAAAA+GGG | + | chr6.3:20313368-20313387 | None:intergenic | 35.0% | |
| GTACTTGCAGAACAAATCTT+CGG | + | chr6.3:20309885-20309904 | None:intergenic | 35.0% | |
| GTGAAGAGGAAATATTTGCA+TGG | + | chr6.3:20313940-20313959 | None:intergenic | 35.0% | |
| GTGGAATGAATTCTACTACT+TGG | - | chr6.3:20314210-20314229 | MS.gene49788:intron | 35.0% | |
| GTGTTTGAAGAACCTTAAGA+GGG | + | chr6.3:20309330-20309349 | None:intergenic | 35.0% | |
| GTTTACATCATGTAGTGAAG+AGG | + | chr6.3:20313954-20313973 | None:intergenic | 35.0% | |
| TAAGTATCTACCTCCCATAA+AGG | + | chr6.3:20311681-20311700 | None:intergenic | 35.0% | |
| TACCAACTATGCTGTACTTA+AGG | + | chr6.3:20310142-20310161 | None:intergenic | 35.0% | |
| TAGATACAGACACAACTAAC+GGG | + | chr6.3:20310690-20310709 | None:intergenic | 35.0% | |
| TAGTTTCTTTCACCATAGGT+TGG | - | chr6.3:20310307-20310326 | MS.gene49788:intron | 35.0% | |
| TATATAACGCACACACGTAT+AGG | + | chr6.3:20314778-20314797 | None:intergenic | 35.0% | |
| TATGGGAGGTAGATACTTAA+TGG | - | chr6.3:20311682-20311701 | MS.gene49788:intron | 35.0% | |
| TATTGTCATCACGACAAACT+TGG | - | chr6.3:20311058-20311077 | MS.gene49788:intron | 35.0% | |
| TCAGTAACTTCATATAGAGG+AGG | + | chr6.3:20312422-20312441 | None:intergenic | 35.0% | |
| TCCTGACTTATTCACATGTA+AGG | - | chr6.3:20309972-20309991 | MS.gene49788:intron | 35.0% | |
| TGGTAGAACAGAACAAGAAA+AGG | + | chr6.3:20313369-20313388 | None:intergenic | 35.0% | |
| TGTATGACATGCATTAGACT+TGG | - | chr6.3:20310606-20310625 | MS.gene49788:intron | 35.0% | |
| TGTCTGTATCTATGCTTCAT+AGG | - | chr6.3:20310698-20310717 | MS.gene49788:intron | 35.0% | |
| TGTGTTTGAAGAACCTTAAG+AGG | + | chr6.3:20309331-20309350 | None:intergenic | 35.0% | |
| TTCACTGCATAATATGCACT+AGG | - | chr6.3:20314118-20314137 | MS.gene49788:intron | 35.0% | |
| TTGTTGTCTGCAGAAGTAAT+TGG | + | chr6.3:20313279-20313298 | None:intergenic | 35.0% | |
| TTTGAACCTGTTGATGTGAT+GGG | - | chr6.3:20309497-20309516 | MS.gene49788:CDS | 35.0% | |
| TTTGACGTTGTAAGAATCAG+AGG | + | chr6.3:20309263-20309282 | None:intergenic | 35.0% | |
| ! | ACACAAATTTGCTCTGATCA+AGG | + | chr6.3:20311401-20311420 | None:intergenic | 35.0% |
| ! | ACCCGGTATATCTGTATTTT+TGG | + | chr6.3:20313005-20313024 | None:intergenic | 35.0% |
| ! | AGGGACATTTTTGATGTGTT+GGG | - | chr6.3:20309561-20309580 | MS.gene49788:intron | 35.0% |
| ! | AGTTGAACAGTTCAAGTTTG+GGG | - | chr6.3:20312377-20312396 | MS.gene49788:intron | 35.0% |
| ! | ATGCATGGATTAAAGATGCA+CGG | + | chr6.3:20312737-20312756 | None:intergenic | 35.0% |
| ! | CAGTTGAACAGTTCAAGTTT+GGG | - | chr6.3:20312376-20312395 | MS.gene49788:intron | 35.0% |
| ! | CTTGTCCATTTGAAACAGTT+GGG | - | chr6.3:20313778-20313797 | MS.gene49788:intron | 35.0% |
| ! | GTTGTTTGTTGAAGGTTTGT+GGG | - | chr6.3:20312560-20312579 | MS.gene49788:intron | 35.0% |
| ! | TAGGGACATTTTTGATGTGT+TGG | - | chr6.3:20309560-20309579 | MS.gene49788:intron | 35.0% |
| ! | TCAGTTGAACAGTTCAAGTT+TGG | - | chr6.3:20312375-20312394 | MS.gene49788:intron | 35.0% |
| ! | TCTAGTTTCTAAACTGAGGA+AGG | + | chr6.3:20314159-20314178 | None:intergenic | 35.0% |
| ! | TGGAAAATGAAGCACTAATC+GGG | + | chr6.3:20312985-20313004 | None:intergenic | 35.0% |
| ! | TGTTGTTTGTTGAAGGTTTG+TGG | - | chr6.3:20312559-20312578 | MS.gene49788:intron | 35.0% |
| ! | TTCTTACCATTTTCCGATTC+CGG | + | chr6.3:20312861-20312880 | None:intergenic | 35.0% |
| ! | TTGTTTGTTGAAGGTTTGTG+GGG | - | chr6.3:20312561-20312580 | MS.gene49788:intron | 35.0% |
| !! | ATGAATCAGTTGGTAACTGT+AGG | - | chr6.3:20309541-20309560 | MS.gene49788:intron | 35.0% |
| !! | GAATGAGATGTTTGCTGTAT+TGG | - | chr6.3:20311223-20311242 | MS.gene49788:intron | 35.0% |
| !! | GACAATTTGGTGAGTGTTTT+CGG | + | chr6.3:20309236-20309255 | None:intergenic | 35.0% |
| !! | TATGATTGGTTTCGAATTCC+AGG | + | chr6.3:20311444-20311463 | None:intergenic | 35.0% |
| !! | TGAATCAGTTGGTAACTGTA+GGG | - | chr6.3:20309542-20309561 | MS.gene49788:intron | 35.0% |
| !!! | AAATTGGATGTTTTGGGTTG+TGG | - | chr6.3:20310758-20310777 | MS.gene49788:intron | 35.0% |
| !!! | AATTGGATGTTTTGGGTTGT+GGG | - | chr6.3:20310759-20310778 | MS.gene49788:intron | 35.0% |
| !!! | ATTTTTTATGTGTGGGGACT+GGG | - | chr6.3:20309761-20309780 | MS.gene49788:intron | 35.0% |
| AAACTTAATGTGTTGGGGTC+TGG | - | chr6.3:20309934-20309953 | MS.gene49788:intron | 40.0% | |
| AAATACAGATATACCGGGTC+GGG | - | chr6.3:20313006-20313025 | MS.gene49788:intron | 40.0% | |
| AACTTAATGTGTTGGGGTCT+GGG | - | chr6.3:20309935-20309954 | MS.gene49788:intron | 40.0% | |
| ACATTTCAGACCTATGGATG+AGG | + | chr6.3:20312186-20312205 | None:intergenic | 40.0% | |
| ACCATCCCAACTGTTTCAAA+TGG | + | chr6.3:20313786-20313805 | None:intergenic | 40.0% | |
| ACGAGTTGTCATGAATCAGT+TGG | - | chr6.3:20309531-20309550 | MS.gene49788:intron | 40.0% | |
| ACTAAGCATTCGATTCAACG+AGG | - | chr6.3:20314693-20314712 | MS.gene49788:intron | 40.0% | |
| ACTAATTCAACAGGCAGAAG+GGG | + | chr6.3:20314033-20314052 | None:intergenic | 40.0% | |
| AGCTTCCTAAATTCAAACCC+AGG | + | chr6.3:20309590-20309609 | None:intergenic | 40.0% | |
| ATTTCCTGTGTGGATAATGC+CGG | - | chr6.3:20314329-20314348 | MS.gene49788:intron | 40.0% | |
| CAAGACTCATCCTACTAGAT+GGG | + | chr6.3:20312097-20312116 | None:intergenic | 40.0% | |
| CACTAATTCAACAGGCAGAA+GGG | + | chr6.3:20314034-20314053 | None:intergenic | 40.0% | |
| CCAACTGTTTCAAATGGACA+AGG | + | chr6.3:20313780-20313799 | None:intergenic | 40.0% | |
| CCAGGAATGTTATTAAGGAC+AGG | + | chr6.3:20314813-20314832 | None:intergenic | 40.0% | |
| CCTGTCCTTAATAACATTCC+TGG | - | chr6.3:20314810-20314829 | MS.gene49788:intron | 40.0% | |
| CTACCTGTTCCAATTGACAT+CGG | + | chr6.3:20312528-20312547 | None:intergenic | 40.0% | |
| CTCGAGATCCTAAGTAAGAT+CGG | + | chr6.3:20313677-20313696 | None:intergenic | 40.0% | |
| GGTAAGGTTCCATGATTCAT+GGG | + | chr6.3:20313191-20313210 | None:intergenic | 40.0% | |
| GGTGTGTGATTCTTGTAACT+AGG | - | chr6.3:20310240-20310259 | MS.gene49788:intron | 40.0% | |
| GTATGATTGCATGACCAATG+AGG | + | chr6.3:20314001-20314020 | None:intergenic | 40.0% | |
| GTTGGAATAGGCAAAGAAGA+AGG | + | chr6.3:20311627-20311646 | None:intergenic | 40.0% | |
| TAAACGCTGTCGCATATACA+TGG | + | chr6.3:20314067-20314086 | None:intergenic | 40.0% | |
| TACCTGTTCCAATTGACATC+GGG | + | chr6.3:20312527-20312546 | None:intergenic | 40.0% | |
| TATGAGTTGTTCTGTTCTGG+AGG | - | chr6.3:20311742-20311761 | MS.gene49788:intron | 40.0% | |
| TCATGTAAGTACAGCTCAGT+TGG | - | chr6.3:20309702-20309721 | MS.gene49788:intron | 40.0% | |
| TCCCCACTTATCCACAATTA+AGG | - | chr6.3:20310219-20310238 | MS.gene49788:intron | 40.0% | |
| TCCCTTAAGTACAGCATAGT+TGG | - | chr6.3:20310137-20310156 | MS.gene49788:intron | 40.0% | |
| TCGAGATCCTAAGTAAGATC+GGG | + | chr6.3:20313676-20313695 | None:intergenic | 40.0% | |
| TCTATTCCCATCACATCAAC+AGG | + | chr6.3:20309506-20309525 | None:intergenic | 40.0% | |
| TGCCTGTTGAATTAGTGCTT+AGG | - | chr6.3:20314037-20314056 | MS.gene49788:intron | 40.0% | |
| TGCGAGACAATTCATCTTAC+AGG | - | chr6.3:20314933-20314952 | MS.gene49788:CDS | 40.0% | |
| TGGGGTGGTGAAAAGTTTAA+AGG | - | chr6.3:20312395-20312414 | MS.gene49788:intron | 40.0% | |
| TGGTAAGGTTCCATGATTCA+TGG | + | chr6.3:20313192-20313211 | None:intergenic | 40.0% | |
| TGTTTCAAATGGACAAGGAG+CGG | + | chr6.3:20313775-20313794 | None:intergenic | 40.0% | |
| TTCACGAGATTGTCGTTCTT+CGG | + | chr6.3:20309290-20309309 | None:intergenic | 40.0% | |
| TTCTGCAAGTACAACTCAGT+TGG | - | chr6.3:20309893-20309912 | MS.gene49788:intron | 40.0% | |
| ! | AAGGGTCTTCAAGGTTCTTT+TGG | - | chr6.3:20312710-20312729 | MS.gene49788:CDS | 40.0% |
| ! | ACATTTTCCGTAATCACTGC+AGG | + | chr6.3:20311960-20311979 | None:intergenic | 40.0% |
| ! | AGGGTCTTCAAGGTTCTTTT+GGG | - | chr6.3:20312711-20312730 | MS.gene49788:CDS | 40.0% |
| ! | ATGAGTTGTTCTGTTCTGGA+GGG | - | chr6.3:20311743-20311762 | MS.gene49788:intron | 40.0% |
| ! | CCTTGTCCATTTGAAACAGT+TGG | - | chr6.3:20313777-20313796 | MS.gene49788:intron | 40.0% |
| ! | CTAACTGCAATGGTGGAAAA+TGG | - | chr6.3:20311839-20311858 | MS.gene49788:intron | 40.0% |
| ! | GCATCGACACTTCAAATTGA+AGG | - | chr6.3:20310574-20310593 | MS.gene49788:intron | 40.0% |
| ! | GGACATTTTTGATGTGTTGG+GGG | - | chr6.3:20309563-20309582 | MS.gene49788:intron | 40.0% |
| ! | GGGACATTTTTGATGTGTTG+GGG | - | chr6.3:20309562-20309581 | MS.gene49788:intron | 40.0% |
| ! | GGTAATTGGTACTTGGTAGT+TGG | + | chr6.3:20313394-20313413 | None:intergenic | 40.0% |
| ! | TCAAATTGCAGGATTTTGGG+AGG | + | chr6.3:20311163-20311182 | None:intergenic | 40.0% |
| ! | TCCATTTGAAACAGTTGGGA+TGG | - | chr6.3:20313782-20313801 | MS.gene49788:intron | 40.0% |
| ! | TTGGTACTTGGTAGTTGGTA+TGG | + | chr6.3:20313389-20313408 | None:intergenic | 40.0% |
| ! | TTTGAAACAGTTGGGATGGT+TGG | - | chr6.3:20313786-20313805 | MS.gene49788:intron | 40.0% |
| !! | ACATTTTGGAAGGGTCTTCA+AGG | - | chr6.3:20312701-20312720 | MS.gene49788:CDS | 40.0% |
| !! | AGACTTGTTGAAGACAGTGT+TGG | + | chr6.3:20312640-20312659 | None:intergenic | 40.0% |
| !! | AGTACAACTCAGTTGGTAGT+CGG | - | chr6.3:20309900-20309919 | MS.gene49788:intron | 40.0% |
| !! | ATAGTGCACTGGTTTGATGT+TGG | - | chr6.3:20312345-20312364 | MS.gene49788:intron | 40.0% |
| !! | GACTTGTTGAAGACAGTGTT+GGG | + | chr6.3:20312639-20312658 | None:intergenic | 40.0% |
| !! | GGTGCAATTTGTTGACCAAA+TGG | - | chr6.3:20310977-20310996 | MS.gene49788:intron | 40.0% |
| !!! | AAGTTGAAAGTTTTGGGCTG+TGG | - | chr6.3:20310449-20310468 | MS.gene49788:intron | 40.0% |
| !!! | AGTTGAAAGTTTTGGGCTGT+GGG | - | chr6.3:20310450-20310469 | MS.gene49788:intron | 40.0% |
| !!! | CATTTTTTATGTGTGGGGAC+TGG | - | chr6.3:20309760-20309779 | MS.gene49788:intron | 40.0% |
| !!! | GGGCTCTTGGTGAATTTTTT+TGG | - | chr6.3:20311352-20311371 | MS.gene49788:intron | 40.0% |
| !!! | TTGTGTTTTGGTACACTCGT+CGG | - | chr6.3:20311415-20311434 | MS.gene49788:intron | 40.0% |
| AACCCGATGTCAATTGGAAC+AGG | - | chr6.3:20312522-20312541 | MS.gene49788:CDS | 45.0% | |
| AAGAAGAAGGACGAGCAAGA+TGG | + | chr6.3:20311614-20311633 | None:intergenic | 45.0% | |
| AAGGACTCTGCTAACTGCAA+TGG | - | chr6.3:20311829-20311848 | MS.gene49788:intron | 45.0% | |
| AATGCCTCTGATCATCAGGT+TGG | - | chr6.3:20314739-20314758 | MS.gene49788:intron | 45.0% | |
| ACATTCCTGGTTATTCACGC+AGG | - | chr6.3:20314823-20314842 | MS.gene49788:intron | 45.0% | |
| ACTACTACATGAGTCGGTGT+TGG | + | chr6.3:20310635-20310654 | None:intergenic | 45.0% | |
| ACTCATCCTACTAGATGGGA+AGG | + | chr6.3:20312093-20312112 | None:intergenic | 45.0% | |
| AGGAATTCGTCCTTTATGGG+AGG | - | chr6.3:20311668-20311687 | MS.gene49788:intron | 45.0% | |
| AGGTTGGAAACCCAGAAAAC+CGG | - | chr6.3:20312939-20312958 | MS.gene49788:intron | 45.0% | |
| ATCTGGACCGTAGAATCGTA+CGG | - | chr6.3:20312796-20312815 | MS.gene49788:intron | 45.0% | |
| CAATCTCGTGAACTCAAAGC+TGG | - | chr6.3:20309298-20309317 | MS.gene49788:intron | 45.0% | |
| CATGTGAACCCGATGTCAAT+TGG | - | chr6.3:20312516-20312535 | MS.gene49788:CDS | 45.0% | |
| CCAAGACTCATCCTACTAGA+TGG | + | chr6.3:20312098-20312117 | None:intergenic | 45.0% | |
| CCATCTAGTAGGATGAGTCT+TGG | - | chr6.3:20312095-20312114 | MS.gene49788:intron | 45.0% | |
| CGATGTCAATTGGAACAGGT+AGG | - | chr6.3:20312526-20312545 | MS.gene49788:CDS | 45.0% | |
| CGATTCAAAAAGGCTGTCTC+AGG | - | chr6.3:20311868-20311887 | MS.gene49788:intron | 45.0% | |
| CTCATCCTACTAGATGGGAA+GGG | + | chr6.3:20312092-20312111 | None:intergenic | 45.0% | |
| GATCCTAAGTAAGATCGGGA+AGG | + | chr6.3:20313672-20313691 | None:intergenic | 45.0% | |
| GCACTAATTCAACAGGCAGA+AGG | + | chr6.3:20314035-20314054 | None:intergenic | 45.0% | |
| GGAAAATGGTAAGAACGGCT+TGG | - | chr6.3:20312866-20312885 | MS.gene49788:intron | 45.0% | |
| GTAGGATGAGTCTTGGTTGT+TGG | - | chr6.3:20312102-20312121 | MS.gene49788:intron | 45.0% | |
| GTGGGTGACCAACTTGATTA+TGG | - | chr6.3:20314649-20314668 | MS.gene49788:intron | 45.0% | |
| GTTATTCACGCAGGCTGTAA+TGG | - | chr6.3:20314832-20314851 | MS.gene49788:CDS | 45.0% | |
| GTTTCAAATGGACAAGGAGC+GGG | + | chr6.3:20313774-20313793 | None:intergenic | 45.0% | |
| TACAGGAACACTTGGTTGAG+AGG | - | chr6.3:20314950-20314969 | MS.gene49788:CDS | 45.0% | |
| TACTCCATAACATAGCCGTG+AGG | + | chr6.3:20314893-20314912 | None:intergenic | 45.0% | |
| TATGGCTGTTCATAGTGCAC+TGG | - | chr6.3:20312334-20312353 | MS.gene49788:intron | 45.0% | |
| TCATCCTACTAGATGGGAAG+GGG | + | chr6.3:20312091-20312110 | None:intergenic | 45.0% | |
| TCTGGGTTTCCAACCTAACT+CGG | + | chr6.3:20312935-20312954 | None:intergenic | 45.0% | |
| TGGTAGACAAACTCTCGATC+TGG | - | chr6.3:20312779-20312798 | MS.gene49788:intron | 45.0% | |
| ! | AACTTGGCGCTCTTTGAAGA+TGG | - | chr6.3:20311074-20311093 | MS.gene49788:intron | 45.0% |
| ! | TGAACAGTTCAAGTTTGGGG+TGG | - | chr6.3:20312380-20312399 | MS.gene49788:intron | 45.0% |
| !! | TGTGGATAATGCCGGTTCTT+TGG | - | chr6.3:20314337-20314356 | MS.gene49788:intron | 45.0% |
| !!! | TGTGTTTTGGTACACTCGTC+GGG | - | chr6.3:20311416-20311435 | MS.gene49788:intron | 45.0% |
| !!! | TATATATGAATTTTTAAATT+TGG | - | chr6.3:20313596-20313615 | MS.gene49788:intron | 5.0% |
| AACGTAGATCCAGCCGAGTT+AGG | - | chr6.3:20312919-20312938 | MS.gene49788:intron | 50.0% | |
| AATCTGATGTGTTGGGGCCT+GGG | - | chr6.3:20310182-20310201 | MS.gene49788:intron | 50.0% | |
| ACCCATGAGATCGTGAATCG+GGG | + | chr6.3:20313649-20313668 | None:intergenic | 50.0% | |
| ACGAGGACATAGTCAGTGTC+TGG | - | chr6.3:20314710-20314729 | MS.gene49788:intron | 50.0% | |
| AGAACCGGCATTATCCACAC+AGG | + | chr6.3:20314336-20314355 | None:intergenic | 50.0% | |
| CATAGCCGTGAGGAAGCTTT+AGG | + | chr6.3:20314883-20314902 | None:intergenic | 50.0% | |
| CGATCTCATCATCTATGGCC+TGG | - | chr6.3:20314543-20314562 | MS.gene49788:intron | 50.0% | |
| CGTCACCTAAAGCTTCCTCA+CGG | - | chr6.3:20314875-20314894 | MS.gene49788:CDS | 50.0% | |
| CGTGGAACCGTACGATTCTA+CGG | + | chr6.3:20312806-20312825 | None:intergenic | 50.0% | |
| GAACACTTGGTTGAGAGGCT+AGG | - | chr6.3:20314955-20314974 | MS.gene49788:CDS | 50.0% | |
| GACCCATGAGATCGTGAATC+GGG | + | chr6.3:20313650-20313669 | None:intergenic | 50.0% | |
| GACTCTGCTAACTGCAATGG+TGG | - | chr6.3:20311832-20311851 | MS.gene49788:intron | 50.0% | |
| GATGCCAACCTGATGATCAG+AGG | + | chr6.3:20314746-20314765 | None:intergenic | 50.0% | |
| GCTTCCTCACGGCTATGTTA+TGG | - | chr6.3:20314886-20314905 | MS.gene49788:CDS | 50.0% | |
| GGAATCTCGAGTTCAAACCC+AGG | + | chr6.3:20310202-20310221 | None:intergenic | 50.0% | |
| GGACCCATGAGATCGTGAAT+CGG | + | chr6.3:20313651-20313670 | None:intergenic | 50.0% | |
| GGATGAGTCTTGGTTGTTGG+TGG | - | chr6.3:20312105-20312124 | MS.gene49788:intron | 50.0% | |
| GGGGACCTGGGTTTGAATTT+AGG | - | chr6.3:20309582-20309601 | MS.gene49788:intron | 50.0% | |
| GGTCCTTCCCGATCTTACTT+AGG | - | chr6.3:20313666-20313685 | MS.gene49788:intron | 50.0% | |
| GGTGTGCGATTCTCGATACT+AGG | - | chr6.3:20309993-20310012 | MS.gene49788:intron | 50.0% | |
| GGTTGGAAACCCAGAAAACC+GGG | - | chr6.3:20312940-20312959 | MS.gene49788:intron | 50.0% | |
| TAATCTGATGTGTTGGGGCC+TGG | - | chr6.3:20310181-20310200 | MS.gene49788:intron | 50.0% | |
| TACAGCCTGCGTGAATAACC+AGG | + | chr6.3:20314831-20314850 | None:intergenic | 50.0% | |
| TAGATCCAGCCGAGTTAGGT+TGG | - | chr6.3:20312923-20312942 | MS.gene49788:intron | 50.0% | |
| TCGCAATGCCTCTGATCATC+AGG | - | chr6.3:20314735-20314754 | MS.gene49788:intron | 50.0% | |
| TGAATCGGGGGATCGTAACA+CGG | + | chr6.3:20313636-20313655 | None:intergenic | 50.0% | |
| TGGGGACTGGGTTCGAATTT+GGG | - | chr6.3:20309773-20309792 | MS.gene49788:intron | 50.0% | |
| TTGACCCCTTCCCATCTAGT+AGG | - | chr6.3:20312084-20312103 | MS.gene49788:intron | 50.0% | |
| TTTGATGTGTTGGGGGACCT+GGG | - | chr6.3:20309570-20309589 | MS.gene49788:intron | 50.0% | |
| ! | TTTTGATGTGTTGGGGGACC+TGG | - | chr6.3:20309569-20309588 | MS.gene49788:intron | 50.0% |
| !! | ACAGCATAGTTGGTAGCTGC+AGG | - | chr6.3:20310147-20310166 | MS.gene49788:intron | 50.0% |
| !! | AGCTGGTCTTCACCCTCTTA+AGG | - | chr6.3:20309315-20309334 | MS.gene49788:intron | 50.0% |
| !! | AGGCTGTCTCAGGTCGTTTT+TGG | - | chr6.3:20311878-20311897 | MS.gene49788:intron | 50.0% |
| !! | ATCAAGTTGGTCACCCACCA+AGG | + | chr6.3:20314647-20314666 | None:intergenic | 50.0% |
| !! | CAGCATAGTTGGTAGCTGCA+GGG | - | chr6.3:20310148-20310167 | MS.gene49788:intron | 50.0% |
| !! | GTTCTGTTCTGGAGGGAGAA+AGG | - | chr6.3:20311750-20311769 | MS.gene49788:intron | 50.0% |
| !! | TCTCGCAGAGAAGCATCATG+CGG | + | chr6.3:20314920-20314939 | None:intergenic | 50.0% |
| !!! | AGGTCGTTTTTGGGAGGATC+TGG | - | chr6.3:20311888-20311907 | MS.gene49788:intron | 50.0% |
| !!! | GGCTGTCTCAGGTCGTTTTT+GGG | - | chr6.3:20311879-20311898 | MS.gene49788:intron | 50.0% |
| !!! | TGTCTCAGGTCGTTTTTGGG+AGG | - | chr6.3:20311882-20311901 | MS.gene49788:intron | 50.0% |
| AACCCAGAAAACCGGGTTCG+CGG | - | chr6.3:20312947-20312966 | MS.gene49788:intron | 55.0% | |
| AATGCAGGTGCTTGCCTTGG+TGG | - | chr6.3:20314630-20314649 | MS.gene49788:intron | 55.0% | |
| ACCAAGAGCCCTTCCCAACA+AGG | + | chr6.3:20311343-20311362 | None:intergenic | 55.0% | |
| AGCCCTTCCCAACAAGGAGA+GGG | + | chr6.3:20311337-20311356 | None:intergenic | 55.0% | |
| AGGTGGCCGGAATCGGAAAA+TGG | - | chr6.3:20312852-20312871 | MS.gene49788:intron | 55.0% | |
| ATGCAGGTGCTTGCCTTGGT+GGG | - | chr6.3:20314631-20314650 | MS.gene49788:intron | 55.0% | |
| CCAAATGCAGGTGCTTGCCT+TGG | - | chr6.3:20314627-20314646 | MS.gene49788:intron | 55.0% | |
| CCAAGGCAAGCACCTGCATT+TGG | + | chr6.3:20314630-20314649 | None:intergenic | 55.0% | |
| CCCATGAGATCGTGAATCGG+GGG | + | chr6.3:20313648-20313667 | None:intergenic | 55.0% | |
| CCCCCGATTCACGATCTCAT+GGG | - | chr6.3:20313645-20313664 | MS.gene49788:intron | 55.0% | |
| CCTATGAGCACGAAGAGGTC+AGG | + | chr6.3:20312835-20312854 | None:intergenic | 55.0% | |
| CCTGACCTCTTCGTGCTCAT+AGG | - | chr6.3:20312832-20312851 | MS.gene49788:intron | 55.0% | |
| GAAGAGGTCAGGCAAGATCG+TGG | + | chr6.3:20312824-20312843 | None:intergenic | 55.0% | |
| GACCTCTTCGTGCTCATAGG+TGG | - | chr6.3:20312835-20312854 | MS.gene49788:intron | 55.0% | |
| GGTTTCCAACCTAACTCGGC+TGG | + | chr6.3:20312931-20312950 | None:intergenic | 55.0% | |
| GTGGGGACTGGGTTCGAATT+TGG | - | chr6.3:20309772-20309791 | MS.gene49788:intron | 55.0% | |
| TCCCCCGATTCACGATCTCA+TGG | - | chr6.3:20313644-20313663 | MS.gene49788:intron | 55.0% | |
| TCCTTGTTGGGAAGGGCTCT+TGG | - | chr6.3:20311339-20311358 | MS.gene49788:intron | 55.0% | |
| TCTTCGTGCTCATAGGTGGC+CGG | - | chr6.3:20312839-20312858 | MS.gene49788:intron | 55.0% | |
| TGCTCATAGGTGGCCGGAAT+CGG | - | chr6.3:20312845-20312864 | MS.gene49788:intron | 55.0% | |
| ACCCAGAAAACCGGGTTCGC+GGG | - | chr6.3:20312948-20312967 | MS.gene49788:intron | 60.0% | |
| ATCCCCCCCCTCTCCTTGTT+GGG | - | chr6.3:20311327-20311346 | MS.gene49788:intron | 60.0% | |
| CCCCCTCTCCTTGTTGGGAA+GGG | - | chr6.3:20311332-20311351 | MS.gene49788:intron | 60.0% | |
| CCCTTCCCAACAAGGAGAGG+GGG | + | chr6.3:20311335-20311354 | None:intergenic | 60.0% | |
| CCTTCCCAACAAGGAGAGGG+GGG | + | chr6.3:20311334-20311353 | None:intergenic | 60.0% | |
| CTTCCCAACAAGGAGAGGGG+GGG | + | chr6.3:20311333-20311352 | None:intergenic | 60.0% | |
| GAGCCCTTCCCAACAAGGAG+AGG | + | chr6.3:20311338-20311357 | None:intergenic | 60.0% | |
| GCCCTTCCCAACAAGGAGAG+GGG | + | chr6.3:20311336-20311355 | None:intergenic | 60.0% | |
| GGCCACCTATGAGCACGAAG+AGG | + | chr6.3:20312840-20312859 | None:intergenic | 60.0% | |
| TATCCCCCCCCTCTCCTTGT+TGG | - | chr6.3:20311326-20311345 | MS.gene49788:intron | 60.0% | |
| TGGTACACTCGTCGGGTACC+TGG | - | chr6.3:20311423-20311442 | MS.gene49788:intron | 60.0% | |
| TTCCCAACAAGGAGAGGGGG+GGG | + | chr6.3:20311332-20311351 | None:intergenic | 60.0% | |
| ! | ACCCGCGAACCCGGTTTTCT+GGG | + | chr6.3:20312952-20312971 | None:intergenic | 60.0% |
| ACCGCGTCCACGACTTTGCG+CGG | + | chr6.3:20312896-20312915 | None:intergenic | 65.0% | |
| ACCGGATCACGAACCCGACC+CGG | + | chr6.3:20313022-20313041 | None:intergenic | 65.0% | |
| ACCGGGTCGGGTTCGTGATC+CGG | - | chr6.3:20313018-20313037 | MS.gene49788:intron | 65.0% | |
| CACGAAACGACCCGCGAACC+CGG | + | chr6.3:20312961-20312980 | None:intergenic | 65.0% | |
| CCCCCCTCTCCTTGTTGGGA+AGG | - | chr6.3:20311331-20311350 | MS.gene49788:intron | 65.0% | |
| TGGATCGCCGCGCAAAGTCG+TGG | - | chr6.3:20312886-20312905 | MS.gene49788:intron | 65.0% | |
| ! | GACCCGCGAACCCGGTTTTC+TGG | + | chr6.3:20312953-20312972 | None:intergenic | 65.0% |
| GCCGCGCAAAGTCGTGGACG+CGG | - | chr6.3:20312892-20312911 | MS.gene49788:intron | 70.0% | |
| GCGCAAAGTCGTGGACGCGG+TGG | - | chr6.3:20312895-20312914 | MS.gene49788:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 20309184 | 20314976 | 20309184 | ID=MS.gene49788 |
| chr6.3 | mRNA | 20309184 | 20314976 | 20309184 | ID=MS.gene49788.t1;Parent=MS.gene49788 |
| chr6.3 | exon | 20314824 | 20314976 | 20314824 | ID=MS.gene49788.t1.exon1;Parent=MS.gene49788.t1 |
| chr6.3 | CDS | 20314824 | 20314976 | 20314824 | ID=cds.MS.gene49788.t1;Parent=MS.gene49788.t1 |
| chr6.3 | exon | 20312660 | 20312752 | 20312660 | ID=MS.gene49788.t1.exon2;Parent=MS.gene49788.t1 |
| chr6.3 | CDS | 20312660 | 20312752 | 20312660 | ID=cds.MS.gene49788.t1;Parent=MS.gene49788.t1 |
| chr6.3 | exon | 20312471 | 20312575 | 20312471 | ID=MS.gene49788.t1.exon3;Parent=MS.gene49788.t1 |
| chr6.3 | CDS | 20312471 | 20312575 | 20312471 | ID=cds.MS.gene49788.t1;Parent=MS.gene49788.t1 |
| chr6.3 | exon | 20312251 | 20312328 | 20312251 | ID=MS.gene49788.t1.exon4;Parent=MS.gene49788.t1 |
| chr6.3 | CDS | 20312251 | 20312328 | 20312251 | ID=cds.MS.gene49788.t1;Parent=MS.gene49788.t1 |
| chr6.3 | exon | 20309404 | 20309523 | 20309404 | ID=MS.gene49788.t1.exon5;Parent=MS.gene49788.t1 |
| chr6.3 | CDS | 20309404 | 20309523 | 20309404 | ID=cds.MS.gene49788.t1;Parent=MS.gene49788.t1 |
| chr6.3 | exon | 20309184 | 20309315 | 20309184 | ID=MS.gene49788.t1.exon6;Parent=MS.gene49788.t1 |
| chr6.3 | CDS | 20309184 | 20309315 | 20309184 | ID=cds.MS.gene49788.t1;Parent=MS.gene49788.t1 |
| Gene Sequence |
| Protein sequence |
