Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053448.t1 | XP_003590157.1 | 97.1 | 206 | 5 | 1 | 1 | 206 | 1 | 205 | 8.30E-115 | 422.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053448.t1 | Q03389 | 67.7 | 198 | 62 | 1 | 11 | 206 | 12 | 209 | 4.1e-78 | 292.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053448.t1 | G7I6M4 | 97.1 | 206 | 5 | 1 | 1 | 206 | 1 | 205 | 6.0e-115 | 422.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053448 | MS.gene53524 | 0.807286 | 5.44E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053448 | MS.gene59609 | PPI |
| MS.gene053448 | MS.gene061975 | PPI |
| MS.gene053448 | MS.gene79721 | PPI |
| MS.gene053448 | MS.gene98171 | PPI |
| MS.gene053448 | MS.gene49788 | PPI |
| MS.gene92142 | MS.gene053448 | PPI |
| MS.gene053448 | MS.gene66985 | PPI |
| MS.gene053448 | MS.gene87959 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053448.t1 | MTR_1g045130 | 97.087 | 206 | 5 | 1 | 1 | 206 | 1 | 205 | 2.22e-150 | 416 |
| MS.gene053448.t1 | MTR_2g018260 | 53.646 | 192 | 84 | 4 | 18 | 206 | 36 | 225 | 5.86e-68 | 207 |
| MS.gene053448.t1 | MTR_6g029230 | 34.507 | 142 | 92 | 1 | 32 | 173 | 48 | 188 | 1.12e-28 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053448.t1 | AT5G35620 | 61.929 | 197 | 64 | 5 | 15 | 206 | 8 | 198 | 1.55e-81 | 241 |
| MS.gene053448.t1 | AT5G35620 | 61.929 | 197 | 64 | 5 | 15 | 206 | 8 | 198 | 1.55e-81 | 241 |
| MS.gene053448.t1 | AT5G35620 | 64.780 | 159 | 49 | 4 | 15 | 168 | 8 | 164 | 1.75e-66 | 202 |
| MS.gene053448.t1 | AT4G18040 | 52.841 | 176 | 80 | 2 | 32 | 205 | 60 | 234 | 1.22e-62 | 194 |
| MS.gene053448.t1 | AT1G29590 | 51.412 | 177 | 83 | 2 | 32 | 206 | 65 | 240 | 3.58e-62 | 193 |
| MS.gene053448.t1 | AT1G29550 | 51.412 | 177 | 83 | 2 | 32 | 206 | 65 | 240 | 5.08e-62 | 193 |
| MS.gene053448.t1 | AT5G18110 | 35.211 | 142 | 91 | 1 | 32 | 173 | 43 | 183 | 3.50e-28 | 105 |
Find 66 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGACTTTCACTTGTTTA+AGG | 0.094149 | 1.4:+29308136 | MS.gene053448:CDS |
| CACTCGGGATCTTCCCATTT+TGG | 0.167355 | 1.4:-29308170 | None:intergenic |
| TAGAGAGAAGATGGACTTTC+TGG | 0.182844 | 1.4:+29306436 | MS.gene053448:CDS |
| AGGATGGGATTGAACCAAAA+TGG | 0.219575 | 1.4:+29308156 | MS.gene053448:CDS |
| ACCTAAACAAGGTGCTGCTT+GGG | 0.298883 | 1.4:+29306476 | MS.gene053448:CDS |
| TCGATACCGTTGAAGAGTTT+TGG | 0.298995 | 1.4:+29306526 | MS.gene053448:CDS |
| GCTTTGATTGGCGAGCAATT+TGG | 0.311257 | 1.4:+29308378 | MS.gene053448:CDS |
| AAGATTGCCCTTTGATTTGC+TGG | 0.317297 | 1.4:-29308219 | None:intergenic |
| GGAAGTGGCGGCGGCTGTTC+CGG | 0.330565 | 1.4:+29306380 | MS.gene053448:CDS |
| CCCCAAGCAGCACCTTGTTT+AGG | 0.348201 | 1.4:-29306477 | None:intergenic |
| AGCAGCACCTTGTTTAGGTT+TGG | 0.348367 | 1.4:-29306472 | None:intergenic |
| CTTTCCTCCATTGGCACACT+CGG | 0.373760 | 1.4:-29308186 | None:intergenic |
| AGCATTGCCAGGCAACTTGC+TGG | 0.374886 | 1.4:-29308117 | None:intergenic |
| CCGGTACCCGCACCGGAGAC+AGG | 0.407193 | 1.4:+29306399 | MS.gene053448:CDS |
| CACCTTGTTTAGGTTTGGAT+TGG | 0.410534 | 1.4:-29306467 | None:intergenic |
| CCTGTCTCCGGTGCGGGTAC+CGG | 0.425952 | 1.4:-29306399 | None:intergenic |
| GACTTTCACTTGTTTAAGGA+TGG | 0.426329 | 1.4:+29308140 | MS.gene053448:CDS |
| GTATCGAGCCTTTGCACCTC+GGG | 0.428704 | 1.4:-29309641 | None:intergenic |
| TTTAGCCCTGTCTCCGGTGC+GGG | 0.431747 | 1.4:-29306405 | None:intergenic |
| CTCTACCGCGGCAGAGGAAG+TGG | 0.436984 | 1.4:+29306365 | MS.gene053448:CDS |
| GCATTGCCAGGCAACTTGCT+GGG | 0.440224 | 1.4:-29308116 | None:intergenic |
| AACCTAAACAAGGTGCTGCT+TGG | 0.442662 | 1.4:+29306475 | MS.gene053448:CDS |
| GGATGGGATTGAACCAAAAT+GGG | 0.454728 | 1.4:+29308157 | MS.gene053448:CDS |
| GAATAGTTGATGGCTTTGAT+TGG | 0.459935 | 1.4:+29308366 | MS.gene053448:intron |
| CGCGGCAGAGGAAGTGGCGG+CGG | 0.461792 | 1.4:+29306371 | MS.gene053448:CDS |
| TTTATAATGCAGATGAGCAT+TGG | 0.470732 | 1.4:+29309476 | MS.gene053448:intron |
| AACACAAACTAGAGAGAAGA+TGG | 0.476038 | 1.4:+29306427 | MS.gene053448:CDS |
| GCGGTAGAGCCTTCAACGAT+TGG | 0.484430 | 1.4:-29306351 | None:intergenic |
| GAGAGTCCACTTTCCTCCAT+TGG | 0.488880 | 1.4:-29308195 | None:intergenic |
| GGAGACACTGAGGACATTTG+CGG | 0.492090 | 1.4:+29308399 | MS.gene053448:CDS |
| GACTCTCACCAGCAAATCAA+AGG | 0.498552 | 1.4:+29308211 | MS.gene053448:CDS |
| GGCTGTTCCGGTACCCGCAC+CGG | 0.502153 | 1.4:+29306392 | MS.gene053448:CDS |
| TTCAAGCCCAGCAAGTTGCC+TGG | 0.503711 | 1.4:+29308110 | MS.gene053448:CDS |
| TGCGAGTGTACGCCAGTGGC+AGG | 0.504625 | 1.4:+29308428 | MS.gene053448:CDS |
| TGCTAAAACCCGAGGTGCAA+AGG | 0.508101 | 1.4:+29309633 | MS.gene053448:CDS |
| ACTTTCACTTGTTTAAGGAT+GGG | 0.509759 | 1.4:+29308141 | MS.gene053448:CDS |
| TGAAGGCTCTACCGCGGCAG+AGG | 0.510636 | 1.4:+29306359 | MS.gene053448:CDS |
| AAGTGAAAGTCAGCATTGCC+AGG | 0.511306 | 1.4:-29308128 | None:intergenic |
| TTGGGGAACCACTCTTCGTA+AGG | 0.512191 | 1.4:+29306494 | MS.gene053448:CDS |
| TGTATCGAGCCTTTGCACCT+CGG | 0.539970 | 1.4:-29309642 | None:intergenic |
| ACGAAAGTTTGTCCTGCCAC+TGG | 0.555236 | 1.4:-29308440 | None:intergenic |
| ACAACAGAACCAATCGTTGA+AGG | 0.556771 | 1.4:+29306342 | MS.gene053448:CDS |
| CGCCGCCACTTCCTCTGCCG+CGG | 0.557840 | 1.4:-29306370 | None:intergenic |
| TTTCCTCCATTGGCACACTC+GGG | 0.558375 | 1.4:-29308185 | None:intergenic |
| AGATGAGCATTGGAAGGAAG+TGG | 0.568986 | 1.4:+29309486 | MS.gene053448:intron |
| GAGCATTGGAAGGAAGTGGA+AGG | 0.573080 | 1.4:+29309490 | MS.gene053448:CDS |
| GAAGATCCCGAGTGTGCCAA+TGG | 0.580686 | 1.4:+29308179 | MS.gene053448:CDS |
| CGGTACCCGCACCGGAGACA+GGG | 0.587251 | 1.4:+29306400 | MS.gene053448:CDS |
| TAATGCAGATGAGCATTGGA+AGG | 0.587446 | 1.4:+29309480 | MS.gene053448:intron |
| GGAGTAAACCTTACGAAGAG+TGG | 0.590798 | 1.4:-29306502 | None:intergenic |
| AAACTCTTCAACGGTATCGA+AGG | 0.596284 | 1.4:-29306523 | None:intergenic |
| ACTCTCACCAGCAAATCAAA+GGG | 0.610543 | 1.4:+29308212 | MS.gene053448:CDS |
| AGCAGCAAATGAGTCTAACC+AGG | 0.617559 | 1.4:+29308476 | MS.gene053448:CDS |
| CCTAAACAAGGTGCTGCTTG+GGG | 0.622835 | 1.4:+29306477 | MS.gene053448:CDS |
| TACCGCGGCAGAGGAAGTGG+CGG | 0.635065 | 1.4:+29306368 | MS.gene053448:CDS |
| GGCAGGACAAACTTTCGTTG+TGG | 0.637833 | 1.4:+29308445 | MS.gene053448:CDS |
| AGTGTGCCAATGGAGGAAAG+TGG | 0.640587 | 1.4:+29308189 | MS.gene053448:CDS |
| GATCCCGAGTGTGCCAATGG+AGG | 0.645027 | 1.4:+29308182 | MS.gene053448:CDS |
| TAGTTGCGAGTGTACGCCAG+TGG | 0.651527 | 1.4:+29308424 | MS.gene053448:CDS |
| GTACCACCAAAACTCTTCAA+CGG | 0.656585 | 1.4:-29306532 | None:intergenic |
| AATTACAGTTTCGAGCCACA+TGG | 0.668557 | 1.4:-29308246 | None:intergenic |
| CAGGAAGATGCTAAAACCCG+AGG | 0.674698 | 1.4:+29309625 | MS.gene053448:intron |
| AACCAATCCAAACCTAAACA+AGG | 0.681137 | 1.4:+29306465 | MS.gene053448:CDS |
| AGGGCAATCTTGATACCATG+TGG | 0.704318 | 1.4:+29308231 | MS.gene053448:CDS |
| AATCGTTGAAGGCTCTACCG+CGG | 0.717531 | 1.4:+29306353 | MS.gene053448:CDS |
| CGAGCAATTTGGAGACACTG+AGG | 0.732972 | 1.4:+29308389 | MS.gene053448:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAAAAAAAAAAAAA+AGG | - | chr1.4:29308288-29308307 | None:intergenic | 0.0% |
| !! | TTCAATAGAAAATAAAAAAA+CGG | - | chr1.4:29306575-29306594 | None:intergenic | 10.0% |
| !!! | TATTGAAAATTTATTTTGAA+TGG | + | chr1.4:29306817-29306836 | MS.gene053448:intron | 10.0% |
| !!! | TTTATTTTCTATTGAATTTA+AGG | + | chr1.4:29306579-29306598 | MS.gene053448:intron | 10.0% |
| !!! | TTTTTTTTAAAGAATATATG+GGG | + | chr1.4:29308297-29308316 | MS.gene053448:intron | 10.0% |
| !! | TAAACATCTATAATTAGTTA+TGG | + | chr1.4:29309270-29309289 | MS.gene053448:intron | 15.0% |
| !!! | TTATTCAATAAGCTATTTTA+GGG | + | chr1.4:29308740-29308759 | MS.gene053448:intron | 15.0% |
| !!! | TTTATTCAATAAGCTATTTT+AGG | + | chr1.4:29308739-29308758 | MS.gene053448:intron | 15.0% |
| !!! | TTTTTGATGATTTTATTTGT+GGG | + | chr1.4:29306746-29306765 | MS.gene053448:intron | 15.0% |
| !!! | TTTTTTGATGATTTTATTTG+TGG | + | chr1.4:29306745-29306764 | MS.gene053448:intron | 15.0% |
| !! | TAATTAGAATCTAAGAGATA+TGG | + | chr1.4:29306870-29306889 | MS.gene053448:intron | 20.0% |
| !! | TGATATATGATAGAACATTA+TGG | + | chr1.4:29307254-29307273 | MS.gene053448:intron | 20.0% |
| !! | TTAAAAAAGTGATGTAAATG+CGG | + | chr1.4:29307502-29307521 | MS.gene053448:intron | 20.0% |
| !!! | AAGTTGTTTTTTAGTAGATA+TGG | + | chr1.4:29306913-29306932 | MS.gene053448:intron | 20.0% |
| !!! | TATTGATTTTTGTAGATCTT+AGG | + | chr1.4:29306651-29306670 | MS.gene053448:intron | 20.0% |
| !!! | TGTTTTTATTGAATAGTTGA+TGG | + | chr1.4:29308356-29308375 | MS.gene053448:intron | 20.0% |
| !!! | TTTTGATGATTTTATTTGTG+GGG | + | chr1.4:29306747-29306766 | MS.gene053448:intron | 20.0% |
| ! | AGAAGATTATAACCCTTTAA+AGG | - | chr1.4:29307874-29307893 | None:intergenic | 25.0% |
| ! | ATGATTGTTGTCACTAATTA+TGG | + | chr1.4:29308333-29308352 | MS.gene053448:intron | 25.0% |
| ! | TATATGATAGAACATTATGG+CGG | + | chr1.4:29307257-29307276 | MS.gene053448:intron | 25.0% |
| ! | TCAACATTCAAATCAACATA+AGG | - | chr1.4:29309244-29309263 | None:intergenic | 25.0% |
| ! | TTATTATTATTTGAACGTCC+AGG | + | chr1.4:29308017-29308036 | MS.gene053448:intron | 25.0% |
| ! | TTGTTGTCATTCAGAATTTA+AGG | - | chr1.4:29309116-29309135 | None:intergenic | 25.0% |
| !! | AGAAAAGCATATAAATTTGC+AGG | - | chr1.4:29308527-29308546 | None:intergenic | 25.0% |
| !!! | AATGTTGGTATTTTGACTTA+GGG | + | chr1.4:29308683-29308702 | MS.gene053448:intron | 25.0% |
| !!! | GATTTTTTTGTTGACTTCTT+TGG | + | chr1.4:29308997-29309016 | MS.gene053448:intron | 25.0% |
| !!! | TATTTTAGGGAGATTAATTG+AGG | + | chr1.4:29308753-29308772 | MS.gene053448:intron | 25.0% |
| !!! | TTGAATGGTTTTGTTATGTT+TGG | + | chr1.4:29306832-29306851 | MS.gene053448:intron | 25.0% |
| !!! | TTTGATGATTTTATTTGTGG+GGG | + | chr1.4:29306748-29306767 | MS.gene053448:intron | 25.0% |
| !!! | TTTTAGTTCCAGAATTATGA+TGG | + | chr1.4:29308965-29308984 | MS.gene053448:intron | 25.0% |
| AAAAAAAAAACCCGAAGGAA+CGG | - | chr1.4:29309080-29309099 | None:intergenic | 30.0% | |
| AAAGAATATATGGGGTAATC+TGG | + | chr1.4:29308305-29308324 | MS.gene053448:intron | 30.0% | |
| ACTTTCACTTGTTTAAGGAT+GGG | + | chr1.4:29308141-29308160 | MS.gene053448:CDS | 30.0% | |
| ATATTGCGTTGAATACTAGA+CGG | + | chr1.4:29306991-29307010 | MS.gene053448:intron | 30.0% | |
| ATATTGTTGTACCTAGACAA+TGG | + | chr1.4:29308585-29308604 | MS.gene053448:intron | 30.0% | |
| ATTCTGAATGACAACAAAAC+AGG | + | chr1.4:29309119-29309138 | MS.gene053448:intron | 30.0% | |
| CATCATTATTTACCAAAACC+TGG | - | chr1.4:29308038-29308057 | None:intergenic | 30.0% | |
| CTTACATGTTCAATTGTTAC+AGG | + | chr1.4:29309606-29309625 | MS.gene053448:intron | 30.0% | |
| GCAGTAACCACTTAAAATTT+AGG | - | chr1.4:29309570-29309589 | None:intergenic | 30.0% | |
| GTCATTTCAACATTAAAGTC+TGG | + | chr1.4:29309019-29309038 | MS.gene053448:intron | 30.0% | |
| TAGTCAAATGTGCCTTTAAA+GGG | + | chr1.4:29307859-29307878 | MS.gene053448:intron | 30.0% | |
| TATAAGAATAACAACAGACC+TGG | - | chr1.4:29308497-29308516 | None:intergenic | 30.0% | |
| TCACATATATACTGAACACT+GGG | + | chr1.4:29307911-29307930 | MS.gene053448:intron | 30.0% | |
| TCATTTCTTCTTTCCCAAAA+GGG | + | chr1.4:29309156-29309175 | MS.gene053448:intron | 30.0% | |
| TTCACATATATACTGAACAC+TGG | + | chr1.4:29307910-29307929 | MS.gene053448:intron | 30.0% | |
| TTTATAATGCAGATGAGCAT+TGG | + | chr1.4:29309476-29309495 | MS.gene053448:intron | 30.0% | |
| ! | GATTTTTGTAGATCTTAGGA+GGG | + | chr1.4:29306655-29306674 | MS.gene053448:intron | 30.0% |
| ! | GTTTCTCTTATAGTTTTCCT+AGG | - | chr1.4:29307203-29307222 | None:intergenic | 30.0% |
| ! | TGATTTTTGTAGATCTTAGG+AGG | + | chr1.4:29306654-29306673 | MS.gene053448:intron | 30.0% |
| ! | TTCTGCTCCTAAATTTTAAG+TGG | + | chr1.4:29309560-29309579 | MS.gene053448:intron | 30.0% |
| !! | CAGGTTTTGGTAAATAATGA+TGG | + | chr1.4:29308036-29308055 | MS.gene053448:intron | 30.0% |
| !!! | CCTTCGGGTTTTTTTTTTTT+GGG | + | chr1.4:29309082-29309101 | MS.gene053448:intron | 30.0% |
| !!! | CTTCGGGTTTTTTTTTTTTG+GGG | + | chr1.4:29309083-29309102 | MS.gene053448:intron | 30.0% |
| !!! | GAATGTTGGTATTTTGACTT+AGG | + | chr1.4:29308682-29308701 | MS.gene053448:intron | 30.0% |
| !!! | TCCTTCGGGTTTTTTTTTTT+TGG | + | chr1.4:29309081-29309100 | MS.gene053448:intron | 30.0% |
| !!! | TTTGGTGGTACGTTTTTTTA+GGG | + | chr1.4:29306544-29306563 | MS.gene053448:intron | 30.0% |
| !!! | TTTTGGTGGTACGTTTTTTT+AGG | + | chr1.4:29306543-29306562 | MS.gene053448:intron | 30.0% |
| AACACAAACTAGAGAGAAGA+TGG | + | chr1.4:29306427-29306446 | MS.gene053448:CDS | 35.0% | |
| AACCAATCCAAACCTAAACA+AGG | + | chr1.4:29306465-29306484 | MS.gene053448:CDS | 35.0% | |
| AGAGTGGTTAAATAGCTAGA+CGG | + | chr1.4:29307168-29307187 | MS.gene053448:intron | 35.0% | |
| CCCAAAAAAAAAAAACCCGA+AGG | - | chr1.4:29309085-29309104 | None:intergenic | 35.0% | |
| CGGTATATGACACAACATTA+TGG | + | chr1.4:29307522-29307541 | MS.gene053448:intron | 35.0% | |
| GACTTTCACTTGTTTAAGGA+TGG | + | chr1.4:29308140-29308159 | MS.gene053448:CDS | 35.0% | |
| GTAGTCAAATGTGCCTTTAA+AGG | + | chr1.4:29307858-29307877 | MS.gene053448:intron | 35.0% | |
| GTCATTTCTTCTTTCCCAAA+AGG | + | chr1.4:29309155-29309174 | MS.gene053448:intron | 35.0% | |
| TATTGCGTTGAATACTAGAC+GGG | + | chr1.4:29306992-29307011 | MS.gene053448:intron | 35.0% | |
| TGTAAGCACAAAACAACTTG+TGG | + | chr1.4:29308809-29308828 | MS.gene053448:intron | 35.0% | |
| TTCCTTAAACATCAACGTTG+CGG | + | chr1.4:29309358-29309377 | MS.gene053448:intron | 35.0% | |
| TTTGGGAAAGAAGAAATGAC+AGG | - | chr1.4:29309155-29309174 | None:intergenic | 35.0% | |
| ! | AATGCTTGGTTGTTGTTGTT+TGG | + | chr1.4:29307302-29307321 | MS.gene053448:intron | 35.0% |
| ! | GACGTTTAGATTTTGCAGTA+AGG | + | chr1.4:29307129-29307148 | MS.gene053448:intron | 35.0% |
| ! | GAGTATTGCCATCATAATTC+TGG | - | chr1.4:29308976-29308995 | None:intergenic | 35.0% |
| ! | TTATTTGAACGTCCAGGTTT+TGG | + | chr1.4:29308023-29308042 | MS.gene053448:intron | 35.0% |
| !! | GAATAGTTGATGGCTTTGAT+TGG | + | chr1.4:29308366-29308385 | MS.gene053448:intron | 35.0% |
| !! | GTTACTGACATGCTTTAAGA+AGG | - | chr1.4:29308923-29308942 | None:intergenic | 35.0% |
| !! | TGCTGACTTTCACTTGTTTA+AGG | + | chr1.4:29308136-29308155 | MS.gene053448:CDS | 35.0% |
| !! | TTGACACGAGCTTTTTGTTT+TGG | + | chr1.4:29309451-29309470 | MS.gene053448:intron | 35.0% |
| AAACCAGACTTAGGTGGTTT+GGG | + | chr1.4:29307093-29307112 | MS.gene053448:intron | 40.0% | |
| AATTACAGTTTCGAGCCACA+TGG | - | chr1.4:29308249-29308268 | None:intergenic | 40.0% | |
| ACAACAGAACCAATCGTTGA+AGG | + | chr1.4:29306342-29306361 | MS.gene053448:CDS | 40.0% | |
| ACACTTCCTTCACATTGTGA+AGG | - | chr1.4:29308655-29308674 | None:intergenic | 40.0% | |
| ACTCTCACCAGCAAATCAAA+GGG | + | chr1.4:29308212-29308231 | MS.gene053448:CDS | 40.0% | |
| AGAGTAGATCAGATGAAGAG+TGG | + | chr1.4:29307152-29307171 | MS.gene053448:intron | 40.0% | |
| AGATAGTCGAAACCAGACTT+AGG | + | chr1.4:29307084-29307103 | MS.gene053448:intron | 40.0% | |
| AGGATGGGATTGAACCAAAA+TGG | + | chr1.4:29308156-29308175 | MS.gene053448:CDS | 40.0% | |
| ATCTTAGGAGGGAGATACTT+AGG | + | chr1.4:29306666-29306685 | MS.gene053448:intron | 40.0% | |
| CAATATAGTCCATCGAGTAG+CGG | - | chr1.4:29309392-29309411 | None:intergenic | 40.0% | |
| GAAAGAAGAAATGACAGGAC+AGG | - | chr1.4:29309150-29309169 | None:intergenic | 40.0% | |
| GGATGGGATTGAACCAAAAT+GGG | + | chr1.4:29308157-29308176 | MS.gene053448:CDS | 40.0% | |
| GTACCACCAAAACTCTTCAA+CGG | - | chr1.4:29306535-29306554 | None:intergenic | 40.0% | |
| TACCGCAACGTTGATGTTTA+AGG | - | chr1.4:29309363-29309382 | None:intergenic | 40.0% | |
| TCTTAGGAGGGAGATACTTA+GGG | + | chr1.4:29306667-29306686 | MS.gene053448:intron | 40.0% | |
| TGAACTTATTGCCGTTCCTT+CGG | + | chr1.4:29309066-29309085 | MS.gene053448:intron | 40.0% | |
| ! | AAACTCTTCAACGGTATCGA+AGG | - | chr1.4:29306526-29306545 | None:intergenic | 40.0% |
| ! | CACCTTGTTTAGGTTTGGAT+TGG | - | chr1.4:29306470-29306489 | None:intergenic | 40.0% |
| ! | GTCATCTCCTATGAGTTTTG+AGG | - | chr1.4:29309429-29309448 | None:intergenic | 40.0% |
| ! | TAGAGAGAAGATGGACTTTC+TGG | + | chr1.4:29306436-29306455 | MS.gene053448:CDS | 40.0% |
| ! | TCGATACCGTTGAAGAGTTT+TGG | + | chr1.4:29306526-29306545 | MS.gene053448:CDS | 40.0% |
| ! | TGGTTGTTGTTGTCGTTGTT+TGG | + | chr1.4:29307596-29307615 | MS.gene053448:intron | 40.0% |
| !! | AAGATTGCCCTTTGATTTGC+TGG | - | chr1.4:29308222-29308241 | None:intergenic | 40.0% |
| !! | ATACCGTTGAAGAGTTTTGG+TGG | + | chr1.4:29306529-29306548 | MS.gene053448:CDS | 40.0% |
| !! | TAATGCAGATGAGCATTGGA+AGG | + | chr1.4:29309480-29309499 | MS.gene053448:intron | 40.0% |
| !!! | ATCTCCTATGAGTTTTGAGG+TGG | - | chr1.4:29309426-29309445 | None:intergenic | 40.0% |
| AACGGCAATAAGTTCAGAGG+GGG | - | chr1.4:29309062-29309081 | None:intergenic | 45.0% | |
| AAGTGAAAGTCAGCATTGCC+AGG | - | chr1.4:29308131-29308150 | None:intergenic | 45.0% | |
| AGAAGAAATGACAGGACAGG+AGG | - | chr1.4:29309147-29309166 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGAGTT+GGG | + | chr1.4:29307040-29307059 | MS.gene053448:intron | 45.0% | |
| AGCAGCAAATGAGTCTAACC+AGG | + | chr1.4:29308476-29308495 | MS.gene053448:CDS | 45.0% | |
| AGGAACGGCAATAAGTTCAG+AGG | - | chr1.4:29309065-29309084 | None:intergenic | 45.0% | |
| AGGGCAATCTTGATACCATG+TGG | + | chr1.4:29308231-29308250 | MS.gene053448:CDS | 45.0% | |
| CCAAGCATTATCCCACTACA+TGG | - | chr1.4:29307291-29307310 | None:intergenic | 45.0% | |
| GAAACCAGACTTAGGTGGTT+TGG | + | chr1.4:29307092-29307111 | MS.gene053448:intron | 45.0% | |
| GAACGGCAATAAGTTCAGAG+GGG | - | chr1.4:29309063-29309082 | None:intergenic | 45.0% | |
| GAACTTATTGCCGTTCCTTC+GGG | + | chr1.4:29309067-29309086 | MS.gene053448:intron | 45.0% | |
| GAAGAAATGACAGGACAGGA+GGG | - | chr1.4:29309146-29309165 | None:intergenic | 45.0% | |
| GACTCTCACCAGCAAATCAA+AGG | + | chr1.4:29308211-29308230 | MS.gene053448:CDS | 45.0% | |
| GCTTTGATTGGCGAGCAATT+TGG | + | chr1.4:29308378-29308397 | MS.gene053448:CDS | 45.0% | |
| GGAACGGCAATAAGTTCAGA+GGG | - | chr1.4:29309064-29309083 | None:intergenic | 45.0% | |
| GGAGTAAACCTTACGAAGAG+TGG | - | chr1.4:29306505-29306524 | None:intergenic | 45.0% | |
| GGTTAAATAGCTAGACGGAG+AGG | + | chr1.4:29307173-29307192 | MS.gene053448:intron | 45.0% | |
| TAGTCGAAACCAGACTTAGG+TGG | + | chr1.4:29307087-29307106 | MS.gene053448:intron | 45.0% | |
| TCTCACGCATACCATTGTCT+AGG | - | chr1.4:29308599-29308618 | None:intergenic | 45.0% | |
| TTCACGCCTTCACAATGTGA+AGG | + | chr1.4:29308646-29308665 | MS.gene053448:intron | 45.0% | |
| ! | AGCAGCACCTTGTTTAGGTT+TGG | - | chr1.4:29306475-29306494 | None:intergenic | 45.0% |
| ! | AGCGAAGATGAAGCCCTTTT+GGG | - | chr1.4:29309172-29309191 | None:intergenic | 45.0% |
| ! | CCATGTAGTGGGATAATGCT+TGG | + | chr1.4:29307288-29307307 | MS.gene053448:intron | 45.0% |
| ! | GAAGTGTCAGTGGTGAATGT+TGG | + | chr1.4:29308668-29308687 | MS.gene053448:intron | 45.0% |
| ! | TTCACATTGTGAAGGCGTGA+AGG | - | chr1.4:29308647-29308666 | None:intergenic | 45.0% |
| !! | AACCTAAACAAGGTGCTGCT+TGG | + | chr1.4:29306475-29306494 | MS.gene053448:CDS | 45.0% |
| !! | ACCTAAACAAGGTGCTGCTT+GGG | + | chr1.4:29306476-29306495 | MS.gene053448:CDS | 45.0% |
| !! | AGATGAGCATTGGAAGGAAG+TGG | + | chr1.4:29309486-29309505 | MS.gene053448:intron | 45.0% |
| !! | CAATGTGAAGGAAGTGTCAG+TGG | + | chr1.4:29308658-29308677 | MS.gene053448:intron | 45.0% |
| !!! | TCCTATGAGTTTTGAGGTGG+CGG | - | chr1.4:29309423-29309442 | None:intergenic | 45.0% |
| !!! | TTGTGTTTTAGCCCTGTCTC+CGG | - | chr1.4:29306414-29306433 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTAAAGAATATAT+GGG | + | chr1.4:29308296-29308315 | MS.gene053448:intron | 5.0% |
| !!! | TTTTTTTTTTAAAGAATATA+TGG | + | chr1.4:29308295-29308314 | MS.gene053448:intron | 5.0% |
| AATCGTTGAAGGCTCTACCG+CGG | + | chr1.4:29306353-29306372 | MS.gene053448:CDS | 50.0% | |
| ACGAAAGTTTGTCCTGCCAC+TGG | - | chr1.4:29308443-29308462 | None:intergenic | 50.0% | |
| ACGGCAATAAGTTCAGAGGG+GGG | - | chr1.4:29309061-29309080 | None:intergenic | 50.0% | |
| AGTGTGCCAATGGAGGAAAG+TGG | + | chr1.4:29308189-29308208 | MS.gene053448:CDS | 50.0% | |
| ATGCCCAAACCACCTAAGTC+TGG | - | chr1.4:29307099-29307118 | None:intergenic | 50.0% | |
| CAGGAAGATGCTAAAACCCG+AGG | + | chr1.4:29309625-29309644 | MS.gene053448:intron | 50.0% | |
| CATCTTGTGCGGCTTTCTGA+TGG | + | chr1.4:29309195-29309214 | MS.gene053448:intron | 50.0% | |
| CGAGCAATTTGGAGACACTG+AGG | + | chr1.4:29308389-29308408 | MS.gene053448:CDS | 50.0% | |
| CGGCGTTTGATCCATGTAGT+GGG | + | chr1.4:29307277-29307296 | MS.gene053448:intron | 50.0% | |
| CTTTCCTCCATTGGCACACT+CGG | - | chr1.4:29308189-29308208 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGT+TGG | + | chr1.4:29307039-29307058 | MS.gene053448:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGTTG+GGG | + | chr1.4:29307041-29307060 | MS.gene053448:intron | 50.0% | |
| GAGAGTCCACTTTCCTCCAT+TGG | - | chr1.4:29308198-29308217 | None:intergenic | 50.0% | |
| GGAGACACTGAGGACATTTG+CGG | + | chr1.4:29308399-29308418 | MS.gene053448:CDS | 50.0% | |
| GGCAGGACAAACTTTCGTTG+TGG | + | chr1.4:29308445-29308464 | MS.gene053448:CDS | 50.0% | |
| TCAGAAAGCCGCACAAGATG+AGG | - | chr1.4:29309195-29309214 | None:intergenic | 50.0% | |
| TCTTCGCTCCTCATCTTGTG+CGG | + | chr1.4:29309184-29309203 | MS.gene053448:intron | 50.0% | |
| TGCTAAAACCCGAGGTGCAA+AGG | + | chr1.4:29309633-29309652 | MS.gene053448:CDS | 50.0% | |
| TGTATCGAGCCTTTGCACCT+CGG | - | chr1.4:29309645-29309664 | None:intergenic | 50.0% | |
| TTGGGGAACCACTCTTCGTA+AGG | + | chr1.4:29306494-29306513 | MS.gene053448:CDS | 50.0% | |
| TTTCCTCCATTGGCACACTC+GGG | - | chr1.4:29308188-29308207 | None:intergenic | 50.0% | |
| ! | CACTCGGGATCTTCCCATTT+TGG | - | chr1.4:29308173-29308192 | None:intergenic | 50.0% |
| ! | CTTAGGTGGTTTGGGCATGT+AGG | + | chr1.4:29307101-29307120 | MS.gene053448:intron | 50.0% |
| ! | GAGCGAAGATGAAGCCCTTT+TGG | - | chr1.4:29309173-29309192 | None:intergenic | 50.0% |
| !! | CCTAAACAAGGTGCTGCTTG+GGG | + | chr1.4:29306477-29306496 | MS.gene053448:CDS | 50.0% |
| !! | GAGCATTGGAAGGAAGTGGA+AGG | + | chr1.4:29309490-29309509 | MS.gene053448:CDS | 50.0% |
| !!! | CCTATGAGTTTTGAGGTGGC+GGG | - | chr1.4:29309422-29309441 | None:intergenic | 50.0% |
| AAGTAGCTGACCCCACCTAG+TGG | + | chr1.4:29307558-29307577 | MS.gene053448:intron | 55.0% | |
| AATAAGTTCAGAGGGGGGGG+GGG | - | chr1.4:29309056-29309075 | None:intergenic | 55.0% | |
| ACTAGGTGGGGTCAGCTACT+TGG | - | chr1.4:29307559-29307578 | None:intergenic | 55.0% | |
| AGCATTGCCAGGCAACTTGC+TGG | - | chr1.4:29308120-29308139 | None:intergenic | 55.0% | |
| AGTAGCTGACCCCACCTAGT+GGG | + | chr1.4:29307559-29307578 | MS.gene053448:intron | 55.0% | |
| CAATAAGTTCAGAGGGGGGG+GGG | - | chr1.4:29309057-29309076 | None:intergenic | 55.0% | |
| CCCGCCACCTCAAAACTCAT+AGG | + | chr1.4:29309419-29309438 | MS.gene053448:intron | 55.0% | |
| CGGCAATAAGTTCAGAGGGG+GGG | - | chr1.4:29309060-29309079 | None:intergenic | 55.0% | |
| CTAGACGGAGAGGAAGACCT+AGG | + | chr1.4:29307183-29307202 | MS.gene053448:intron | 55.0% | |
| GAAGATCCCGAGTGTGCCAA+TGG | + | chr1.4:29308179-29308198 | MS.gene053448:CDS | 55.0% | |
| GCAATAAGTTCAGAGGGGGG+GGG | - | chr1.4:29309058-29309077 | None:intergenic | 55.0% | |
| GCGGCGTTTGATCCATGTAG+TGG | + | chr1.4:29307276-29307295 | MS.gene053448:intron | 55.0% | |
| GCGGTAGAGCCTTCAACGAT+TGG | - | chr1.4:29306354-29306373 | None:intergenic | 55.0% | |
| GGCAATAAGTTCAGAGGGGG+GGG | - | chr1.4:29309059-29309078 | None:intergenic | 55.0% | |
| GTAGCTATGCCGCTACTCGA+TGG | + | chr1.4:29309380-29309399 | MS.gene053448:intron | 55.0% | |
| GTATCGAGCCTTTGCACCTC+GGG | - | chr1.4:29309644-29309663 | None:intergenic | 55.0% | |
| TAGTTGCGAGTGTACGCCAG+TGG | + | chr1.4:29308424-29308443 | MS.gene053448:CDS | 55.0% | |
| TGACCCCACCTAGTGGGATA+AGG | + | chr1.4:29307565-29307584 | MS.gene053448:intron | 55.0% | |
| TTCAAGCCCAGCAAGTTGCC+TGG | + | chr1.4:29308110-29308129 | MS.gene053448:CDS | 55.0% | |
| ! | CCCCAAGCAGCACCTTGTTT+AGG | - | chr1.4:29306480-29306499 | None:intergenic | 55.0% |
| ! | GCATTGCCAGGCAACTTGCT+GGG | - | chr1.4:29308119-29308138 | None:intergenic | 55.0% |
| ! | GGTGGTTTGGGCATGTAGGT+AGG | + | chr1.4:29307105-29307124 | MS.gene053448:intron | 55.0% |
| ! | TTTTAGCCCTGTCTCCGGTG+CGG | - | chr1.4:29306409-29306428 | None:intergenic | 55.0% |
| AGCCGCCTTATCCCACTAGG+TGG | - | chr1.4:29307573-29307592 | None:intergenic | 60.0% | |
| ATAAGTTCAGAGGGGGGGGG+GGG | - | chr1.4:29309055-29309074 | None:intergenic | 60.0% | |
| CCAAGCCGCCTTATCCCACT+AGG | - | chr1.4:29307576-29307595 | None:intergenic | 60.0% | |
| CCCCACCTAGTGGGATAAGG+CGG | + | chr1.4:29307568-29307587 | MS.gene053448:intron | 60.0% | |
| CCGCCTTATCCCACTAGGTG+GGG | - | chr1.4:29307571-29307590 | None:intergenic | 60.0% | |
| CCTAGTGGGATAAGGCGGCT+TGG | + | chr1.4:29307573-29307592 | MS.gene053448:intron | 60.0% | |
| GATCCCGAGTGTGCCAATGG+AGG | + | chr1.4:29308182-29308201 | MS.gene053448:CDS | 60.0% | |
| GCCGCCTTATCCCACTAGGT+GGG | - | chr1.4:29307572-29307591 | None:intergenic | 60.0% | |
| TTTAGCCCTGTCTCCGGTGC+GGG | - | chr1.4:29306408-29306427 | None:intergenic | 60.0% | |
| ! | AGTGGGATAAGGCGGCTTGG+TGG | + | chr1.4:29307576-29307595 | MS.gene053448:intron | 60.0% |
| CTCTACCGCGGCAGAGGAAG+TGG | + | chr1.4:29306365-29306384 | MS.gene053448:CDS | 65.0% | |
| TACCGCGGCAGAGGAAGTGG+CGG | + | chr1.4:29306368-29306387 | MS.gene053448:CDS | 65.0% | |
| TGAAGGCTCTACCGCGGCAG+AGG | + | chr1.4:29306359-29306378 | MS.gene053448:CDS | 65.0% | |
| TGCGAGTGTACGCCAGTGGC+AGG | + | chr1.4:29308428-29308447 | MS.gene053448:CDS | 65.0% | |
| CCTGTCTCCGGTGCGGGTAC+CGG | - | chr1.4:29306402-29306421 | None:intergenic | 70.0% | |
| CGGTACCCGCACCGGAGACA+GGG | + | chr1.4:29306400-29306419 | MS.gene053448:CDS | 70.0% | |
| GGAAGTGGCGGCGGCTGTTC+CGG | + | chr1.4:29306380-29306399 | MS.gene053448:CDS | 70.0% | |
| GGCTGTTCCGGTACCCGCAC+CGG | + | chr1.4:29306392-29306411 | MS.gene053448:CDS | 70.0% | |
| AGTTCAGAGGGGGGGGGGGG+TGG | - | chr1.4:29309052-29309071 | None:intergenic | 75.0% | |
| CCGGTACCCGCACCGGAGAC+AGG | + | chr1.4:29306399-29306418 | MS.gene053448:CDS | 75.0% | |
| CGCCGCCACTTCCTCTGCCG+CGG | - | chr1.4:29306373-29306392 | None:intergenic | 75.0% | |
| CGCGGCAGAGGAAGTGGCGG+CGG | + | chr1.4:29306371-29306390 | MS.gene053448:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 29306336 | 29309672 | 29306336 | ID=MS.gene053448 |
| chr1.4 | mRNA | 29306336 | 29309672 | 29306336 | ID=MS.gene053448.t1;Parent=MS.gene053448 |
| chr1.4 | exon | 29306336 | 29306550 | 29306336 | ID=MS.gene053448.t1.exon1;Parent=MS.gene053448.t1 |
| chr1.4 | CDS | 29306336 | 29306550 | 29306336 | ID=cds.MS.gene053448.t1;Parent=MS.gene053448.t1 |
| chr1.4 | exon | 29308094 | 29308262 | 29308094 | ID=MS.gene053448.t1.exon2;Parent=MS.gene053448.t1 |
| chr1.4 | CDS | 29308094 | 29308262 | 29308094 | ID=cds.MS.gene053448.t1;Parent=MS.gene053448.t1 |
| chr1.4 | exon | 29308372 | 29308497 | 29308372 | ID=MS.gene053448.t1.exon3;Parent=MS.gene053448.t1 |
| chr1.4 | CDS | 29308372 | 29308497 | 29308372 | ID=cds.MS.gene053448.t1;Parent=MS.gene053448.t1 |
| chr1.4 | exon | 29309488 | 29309553 | 29309488 | ID=MS.gene053448.t1.exon4;Parent=MS.gene053448.t1 |
| chr1.4 | CDS | 29309488 | 29309553 | 29309488 | ID=cds.MS.gene053448.t1;Parent=MS.gene053448.t1 |
| chr1.4 | exon | 29309628 | 29309672 | 29309628 | ID=MS.gene053448.t1.exon5;Parent=MS.gene053448.t1 |
| chr1.4 | CDS | 29309628 | 29309672 | 29309628 | ID=cds.MS.gene053448.t1;Parent=MS.gene053448.t1 |
| Gene Sequence |
| Protein sequence |
