Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073893.t1 | XP_003590157.1 | 95.2 | 208 | 7 | 1 | 1 | 208 | 1 | 205 | 1.60E-113 | 418.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073893.t1 | Q03389 | 64.7 | 207 | 59 | 3 | 16 | 208 | 3 | 209 | 7.8e-77 | 288.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073893.t1 | G7I6M4 | 95.2 | 208 | 7 | 1 | 1 | 208 | 1 | 205 | 1.1e-113 | 418.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058994 | MS.gene073893 | 0.802647 | 5.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073893 | MS.gene98171 | PPI |
| MS.gene073893 | MS.gene49788 | PPI |
| MS.gene92142 | MS.gene073893 | PPI |
| MS.gene073893 | MS.gene66985 | PPI |
| MS.gene073893 | MS.gene87959 | PPI |
| MS.gene073893 | MS.gene59609 | PPI |
| MS.gene073893 | MS.gene061975 | PPI |
| MS.gene073893 | MS.gene79721 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073893.t1 | MTR_1g045130 | 95.192 | 208 | 7 | 1 | 1 | 208 | 1 | 205 | 5.73e-149 | 412 |
| MS.gene073893.t1 | MTR_2g018260 | 55.026 | 189 | 80 | 4 | 23 | 208 | 39 | 225 | 3.90e-68 | 208 |
| MS.gene073893.t1 | MTR_6g029230 | 34.507 | 142 | 92 | 1 | 34 | 175 | 48 | 188 | 3.71e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073893.t1 | AT5G35620 | 58.621 | 203 | 71 | 5 | 13 | 208 | 2 | 198 | 5.60e-80 | 237 |
| MS.gene073893.t1 | AT5G35620 | 58.621 | 203 | 71 | 5 | 13 | 208 | 2 | 198 | 5.60e-80 | 237 |
| MS.gene073893.t1 | AT5G35620 | 60.606 | 165 | 56 | 4 | 13 | 170 | 2 | 164 | 1.07e-64 | 197 |
| MS.gene073893.t1 | AT4G18040 | 53.672 | 177 | 79 | 2 | 34 | 208 | 60 | 235 | 1.52e-63 | 197 |
| MS.gene073893.t1 | AT1G29590 | 51.977 | 177 | 82 | 2 | 34 | 208 | 65 | 240 | 5.80e-63 | 196 |
| MS.gene073893.t1 | AT1G29550 | 51.977 | 177 | 82 | 2 | 34 | 208 | 65 | 240 | 8.13e-63 | 195 |
| MS.gene073893.t1 | AT5G18110 | 35.915 | 142 | 90 | 1 | 34 | 175 | 43 | 183 | 8.36e-29 | 107 |
Find 66 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTGACTTTCACTTGTTTA+AGG | 0.064986 | 1.3:+26738241 | MS.gene073893:CDS |
| CACTCGGGATCTTCCCATTT+TGG | 0.167355 | 1.3:-26738275 | None:intergenic |
| TAGAGAGAAGATGGACTTTC+TGG | 0.182844 | 1.3:+26736472 | MS.gene073893:CDS |
| AGGATGGGATTGAACCAAAA+TGG | 0.219575 | 1.3:+26738261 | MS.gene073893:CDS |
| ACCTAAACAAGGTGCTGCTT+GGG | 0.298883 | 1.3:+26736512 | MS.gene073893:CDS |
| TCGATACCGTTGAAGAGTTT+TGG | 0.298995 | 1.3:+26736562 | MS.gene073893:CDS |
| AAGATTGCCCTTTGATTTGC+TGG | 0.317297 | 1.3:-26738324 | None:intergenic |
| GGAAGTTGCGGCGGCTGTTC+CGG | 0.319278 | 1.3:+26736410 | MS.gene073893:CDS |
| AGCGTTGCCAGGCAACTTGC+TGG | 0.332275 | 1.3:-26738222 | None:intergenic |
| GCTTTGATTGGTGAGCAATT+TGG | 0.341945 | 1.3:+26738486 | MS.gene073893:CDS |
| CCCCAAGCAGCACCTTGTTT+AGG | 0.348201 | 1.3:-26736513 | None:intergenic |
| AGCAGCACCTTGTTTAGGTT+TGG | 0.348367 | 1.3:-26736508 | None:intergenic |
| CCTGTCTCCGGTGCCGGTGT+AGG | 0.354271 | 1.3:-26736435 | None:intergenic |
| CTTTCCTCCATTGGCACACT+CGG | 0.373760 | 1.3:-26738291 | None:intergenic |
| CACCTTGTTTAGGTTTGGAT+TGG | 0.410534 | 1.3:-26736503 | None:intergenic |
| CTGTCTCCGGTGCCGGTGTA+GGG | 0.412272 | 1.3:-26736434 | None:intergenic |
| CCTACACCGGCACCGGAGAC+AGG | 0.419265 | 1.3:+26736435 | MS.gene073893:CDS |
| TTTAGCCCTGTCTCCGGTGC+CGG | 0.427478 | 1.3:-26736441 | None:intergenic |
| GTATCGAGCCTTTGCACCTC+GGG | 0.428704 | 1.3:-26739962 | None:intergenic |
| GACTTTCACTTGTTTAAGGA+TGG | 0.431745 | 1.3:+26738245 | MS.gene073893:CDS |
| GCGTTGCCAGGCAACTTGCT+GGG | 0.441331 | 1.3:-26738221 | None:intergenic |
| AACCTAAACAAGGTGCTGCT+TGG | 0.442662 | 1.3:+26736511 | MS.gene073893:CDS |
| GGATGGGATTGAACCAAAAT+GGG | 0.454728 | 1.3:+26738262 | MS.gene073893:CDS |
| TCCGGTGCCGGTGTAGGGAC+CGG | 0.467975 | 1.3:-26736429 | None:intergenic |
| GAATAGTTGATGGCTTTGAT+TGG | 0.470057 | 1.3:+26738474 | MS.gene073893:intron |
| TTTATAATGCAGATGAGCAT+TGG | 0.470732 | 1.3:+26739797 | MS.gene073893:intron |
| AACACAAACTAGAGAGAAGA+TGG | 0.476038 | 1.3:+26736463 | MS.gene073893:CDS |
| GCGGTAGAGCCTTCAACGAT+TGG | 0.484430 | 1.3:-26736381 | None:intergenic |
| AAGTGAAAGTCAGCGTTGCC+AGG | 0.484528 | 1.3:-26738233 | None:intergenic |
| GAGAGTCCACTTTCCTCCAT+TGG | 0.488880 | 1.3:-26738300 | None:intergenic |
| GGAGACACTGAGGACATTTG+CGG | 0.492090 | 1.3:+26738507 | MS.gene073893:CDS |
| GACTCTCACCAGCAAATCAA+AGG | 0.498552 | 1.3:+26738316 | MS.gene073893:CDS |
| CACCTGGTTCGACTCATTTG+CGG | 0.498613 | 1.3:-26738586 | None:intergenic |
| TTCAAGCCCAGCAAGTTGCC+TGG | 0.503711 | 1.3:+26738215 | MS.gene073893:CDS |
| TGCTAAAACCCGAGGTGCAA+AGG | 0.508101 | 1.3:+26739954 | MS.gene073893:CDS |
| ACTTTCACTTGTTTAAGGAT+GGG | 0.509759 | 1.3:+26738246 | MS.gene073893:CDS |
| TGAAGGCTCTACCGCGGCAG+AGG | 0.510636 | 1.3:+26736389 | MS.gene073893:CDS |
| TTGGGGAACCACTCTTCGTA+AGG | 0.512191 | 1.3:+26736530 | MS.gene073893:CDS |
| GGCTGTTCCGGTCCCTACAC+CGG | 0.522985 | 1.3:+26736422 | MS.gene073893:CDS |
| TGTATCGAGCCTTTGCACCT+CGG | 0.539970 | 1.3:-26739963 | None:intergenic |
| TCCGGTCCCTACACCGGCAC+CGG | 0.541798 | 1.3:+26736428 | MS.gene073893:CDS |
| ACAGCAGAACCAATCGTTGA+AGG | 0.554417 | 1.3:+26736372 | MS.gene073893:CDS |
| CGCCGCAACTTCCTCTGCCG+CGG | 0.556550 | 1.3:-26736400 | None:intergenic |
| TTTCCTCCATTGGCACACTC+GGG | 0.558375 | 1.3:-26738290 | None:intergenic |
| AGCCGCAAATGAGTCGAACC+AGG | 0.565430 | 1.3:+26738584 | MS.gene073893:CDS |
| AGATGAGCATTGGAAGGAAG+TGG | 0.568986 | 1.3:+26739807 | MS.gene073893:intron |
| CGCGGCAGAGGAAGTTGCGG+CGG | 0.573339 | 1.3:+26736401 | MS.gene073893:CDS |
| CTACACCGGCACCGGAGACA+GGG | 0.575935 | 1.3:+26736436 | MS.gene073893:CDS |
| GAAGATCCCGAGTGTGCCAA+TGG | 0.580686 | 1.3:+26738284 | MS.gene073893:CDS |
| TAATGCAGATGAGCATTGGA+AGG | 0.587446 | 1.3:+26739801 | MS.gene073893:intron |
| GGAGTAAACCTTACGAAGAG+TGG | 0.590798 | 1.3:-26736538 | None:intergenic |
| AAACTCTTCAACGGTATCGA+AGG | 0.596284 | 1.3:-26736559 | None:intergenic |
| TAGTTGTGAGTGTGCGCCAG+TGG | 0.600492 | 1.3:+26738532 | MS.gene073893:CDS |
| ACTCTCACCAGCAAATCAAA+GGG | 0.610543 | 1.3:+26738317 | MS.gene073893:CDS |
| TACCGCGGCAGAGGAAGTTG+CGG | 0.615732 | 1.3:+26736398 | MS.gene073893:CDS |
| CCTAAACAAGGTGCTGCTTG+GGG | 0.622835 | 1.3:+26736513 | MS.gene073893:CDS |
| AGTGTGCCAATGGAGGAAAG+TGG | 0.640587 | 1.3:+26738294 | MS.gene073893:CDS |
| GATCCCGAGTGTGCCAATGG+AGG | 0.645027 | 1.3:+26738287 | MS.gene073893:CDS |
| GCACCACCAAAACTCTTCAA+CGG | 0.658881 | 1.3:-26736568 | None:intergenic |
| GGCAAGACAAAATTTCGTTG+TGG | 0.664072 | 1.3:+26738553 | MS.gene073893:CDS |
| AATTACAGTTTCGAGCCACA+TGG | 0.668557 | 1.3:-26738351 | None:intergenic |
| CAGGAAGATGCTAAAACCCG+AGG | 0.674698 | 1.3:+26739946 | MS.gene073893:intron |
| AACCAATCCAAACCTAAACA+AGG | 0.681137 | 1.3:+26736501 | MS.gene073893:CDS |
| AGGGCAATCTTGATACCATG+TGG | 0.704318 | 1.3:+26738336 | MS.gene073893:CDS |
| AATCGTTGAAGGCTCTACCG+CGG | 0.717531 | 1.3:+26736383 | MS.gene073893:CDS |
| TGAGCAATTTGGAGACACTG+AGG | 0.752740 | 1.3:+26738497 | MS.gene073893:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATTTAAAAAAAAA+CGG | - | chr1.3:26736614-26736633 | None:intergenic | 0.0% |
| !!! | TATTGAAAATTTATTTTGAA+TGG | + | chr1.3:26736862-26736881 | MS.gene073893:intron | 10.0% |
| !!! | TTTTCTTTTAAAGAATATAT+GGG | + | chr1.3:26738405-26738424 | MS.gene073893:intron | 10.0% |
| !!! | TTTTGATGATTTTATATATA+GGG | + | chr1.3:26736792-26736811 | MS.gene073893:intron | 10.0% |
| !!! | TTTTTCTTTTAAAGAATATA+TGG | + | chr1.3:26738404-26738423 | MS.gene073893:intron | 10.0% |
| !!! | TTTTTGATGATTTTATATAT+AGG | + | chr1.3:26736791-26736810 | MS.gene073893:intron | 10.0% |
| !! | AAAGAAAAAAGAAAAAAAAC+AGG | - | chr1.3:26738393-26738412 | None:intergenic | 15.0% |
| !! | TAAAAAAGAACTCAAAAAAA+GGG | - | chr1.3:26739310-26739329 | None:intergenic | 15.0% |
| !! | TTATTATTATTTGAATGTTC+AGG | + | chr1.3:26738033-26738052 | MS.gene073893:intron | 15.0% |
| !!! | GTAATTTATGTTATTTTGTT+TGG | + | chr1.3:26738653-26738672 | MS.gene073893:intron | 15.0% |
| !!! | TTATTCAATAAGCTATTTTA+GGG | + | chr1.3:26738845-26738864 | MS.gene073893:intron | 15.0% |
| !!! | TTTATTCAATAAGCTATTTT+AGG | + | chr1.3:26738844-26738863 | MS.gene073893:intron | 15.0% |
| !!! | TTTCTTTTAAAGAATATATG+GGG | + | chr1.3:26738406-26738425 | MS.gene073893:intron | 15.0% |
| !!! | TTTGATGATTTTATATATAG+GGG | + | chr1.3:26736793-26736812 | MS.gene073893:intron | 15.0% |
| !! | AAAAAAGAACTCAAAAAAAG+GGG | - | chr1.3:26739309-26739328 | None:intergenic | 20.0% |
| !! | CTAAAAAAGAACTCAAAAAA+AGG | - | chr1.3:26739311-26739330 | None:intergenic | 20.0% |
| !! | TAATTAGAATCTAAGAGATA+TGG | + | chr1.3:26736915-26736934 | MS.gene073893:intron | 20.0% |
| !! | TGATATATGATAGAACATTA+TGG | + | chr1.3:26737286-26737305 | MS.gene073893:intron | 20.0% |
| !! | TTAAAAAAGTGATGTAAATG+TGG | + | chr1.3:26737507-26737526 | MS.gene073893:intron | 20.0% |
| !! | TTACTATTATTTGAATGTTC+AGG | + | chr1.3:26738122-26738141 | MS.gene073893:intron | 20.0% |
| !!! | AAGTTGTTTTTTAGTAGATA+TGG | + | chr1.3:26736957-26736976 | MS.gene073893:intron | 20.0% |
| !!! | ATTTATGTTGATTTGAATGT+TGG | + | chr1.3:26739565-26739584 | MS.gene073893:intron | 20.0% |
| ! | AAAAAGAACTCAAAAAAAGG+GGG | - | chr1.3:26739308-26739327 | None:intergenic | 25.0% |
| ! | CACTTATTGTAGAAAAAAGA+TGG | + | chr1.3:26737106-26737125 | MS.gene073893:intron | 25.0% |
| ! | TATATGATAGAACATTATGG+CGG | + | chr1.3:26737289-26737308 | MS.gene073893:intron | 25.0% |
| ! | TGAAGATTATAACCCTTTAA+AGG | - | chr1.3:26737920-26737939 | None:intergenic | 25.0% |
| ! | TGTAAGTTGTAACTAGATAA+TGG | + | chr1.3:26738700-26738719 | MS.gene073893:intron | 25.0% |
| !! | ATTTCAGTAACTTTTGAATG+TGG | + | chr1.3:26739028-26739047 | MS.gene073893:intron | 25.0% |
| !! | GATTTTTGTAGATCTTATGA+GGG | + | chr1.3:26736700-26736719 | MS.gene073893:intron | 25.0% |
| !! | TGATTTTTGTAGATCTTATG+AGG | + | chr1.3:26736699-26736718 | MS.gene073893:intron | 25.0% |
| !! | TTTCAGTAACTTTTGAATGT+GGG | + | chr1.3:26739029-26739048 | MS.gene073893:intron | 25.0% |
| !!! | ATGTTTGTTGTCACTAATTA+TGG | + | chr1.3:26738441-26738460 | MS.gene073893:intron | 25.0% |
| !!! | TATATTTTTGTTGACTTCCT+TGG | + | chr1.3:26739236-26739255 | MS.gene073893:intron | 25.0% |
| !!! | TCTATTTTTTAGCTCATGTA+TGG | + | chr1.3:26739640-26739659 | MS.gene073893:intron | 25.0% |
| !!! | TGGTTTTATTGAATAGTTGA+TGG | + | chr1.3:26738464-26738483 | MS.gene073893:intron | 25.0% |
| !!! | TTATTTGAATGTTCAGGTTT+TGG | + | chr1.3:26738039-26738058 | MS.gene073893:intron | 25.0% |
| !!! | TTGAATGGTTTTGTTATGTT+TGG | + | chr1.3:26736877-26736896 | MS.gene073893:intron | 25.0% |
| !!! | TTTTAGTTCCAGAATTATGA+TGG | + | chr1.3:26739067-26739086 | MS.gene073893:intron | 25.0% |
| ACTTTCACTTGTTTAAGGAT+GGG | + | chr1.3:26738246-26738265 | MS.gene073893:CDS | 30.0% | |
| ATATTGCGTTGAATACTAGA+CGG | + | chr1.3:26737034-26737053 | MS.gene073893:intron | 30.0% | |
| ATGTAATGTTGAAATGACCA+AGG | - | chr1.3:26739256-26739275 | None:intergenic | 30.0% | |
| ATTTCACATATACTGAACAC+TGG | + | chr1.3:26737954-26737973 | MS.gene073893:intron | 30.0% | |
| CTTACATGTTCAATTGTTAC+AGG | + | chr1.3:26739927-26739946 | MS.gene073893:intron | 30.0% | |
| GAATATTGCCATCATAATTC+TGG | - | chr1.3:26739078-26739097 | None:intergenic | 30.0% | |
| GATTTGAATGTTGGTACTAA+TGG | + | chr1.3:26739574-26739593 | MS.gene073893:intron | 30.0% | |
| GTCATTTCAACATTACATTC+TGG | + | chr1.3:26739258-26739277 | MS.gene073893:intron | 30.0% | |
| TAGTCAAATGTGCCTTTAAA+GGG | + | chr1.3:26737905-26737924 | MS.gene073893:intron | 30.0% | |
| TGGTATATGACACAACATTA+TGG | + | chr1.3:26737527-26737546 | MS.gene073893:intron | 30.0% | |
| TGTTGGTATTGTTAGACTTA+AGG | + | chr1.3:26738792-26738811 | MS.gene073893:intron | 30.0% | |
| TTGCTGTCATTCAGAATTTA+AGG | - | chr1.3:26739411-26739430 | None:intergenic | 30.0% | |
| TTTATAATGCAGATGAGCAT+TGG | + | chr1.3:26739797-26739816 | MS.gene073893:intron | 30.0% | |
| TTTCACATATACTGAACACT+GGG | + | chr1.3:26737955-26737974 | MS.gene073893:intron | 30.0% | |
| ! | AAATGCCATCTATGAGTTTT+GGG | - | chr1.3:26739754-26739773 | None:intergenic | 30.0% |
| ! | AGTTACTGAAATGCTTTAAG+AGG | - | chr1.3:26739020-26739039 | None:intergenic | 30.0% |
| ! | GTTTCTCTTATAGTTTTCCT+AGG | - | chr1.3:26737242-26737261 | None:intergenic | 30.0% |
| ! | TTTGTTGTCACTAATTATGG+TGG | + | chr1.3:26738444-26738463 | MS.gene073893:intron | 30.0% |
| !! | AAATTAAGTTTTAGCCTCCA+AGG | - | chr1.3:26739549-26739568 | None:intergenic | 30.0% |
| !! | GTTACTGAAATGCTTTAAGA+GGG | - | chr1.3:26739019-26739038 | None:intergenic | 30.0% |
| !! | TTGACACAAGCTTTTTGTTT+TGG | + | chr1.3:26739772-26739791 | MS.gene073893:intron | 30.0% |
| AAAGAATATATGGGGTGATC+TGG | + | chr1.3:26738414-26738433 | MS.gene073893:intron | 35.0% | |
| AACACAAACTAGAGAGAAGA+TGG | + | chr1.3:26736463-26736482 | MS.gene073893:CDS | 35.0% | |
| AACCAATCCAAACCTAAACA+AGG | + | chr1.3:26736501-26736520 | MS.gene073893:CDS | 35.0% | |
| AGCTAGAAAGTTTGCAGAAA+AGG | - | chr1.3:26739516-26739535 | None:intergenic | 35.0% | |
| ATCTTATGAGGGAGATACTT+AGG | + | chr1.3:26736711-26736730 | MS.gene073893:intron | 35.0% | |
| GAAAAGCCCAAAAAATTCGA+AGG | - | chr1.3:26739386-26739405 | None:intergenic | 35.0% | |
| GACTTTCACTTGTTTAAGGA+TGG | + | chr1.3:26738245-26738264 | MS.gene073893:CDS | 35.0% | |
| GGTTATAATCTTCAGCTTGT+TGG | + | chr1.3:26737926-26737945 | MS.gene073893:intron | 35.0% | |
| GTAGTCAAATGTGCCTTTAA+AGG | + | chr1.3:26737904-26737923 | MS.gene073893:intron | 35.0% | |
| TATTGCGTTGAATACTAGAC+GGG | + | chr1.3:26737035-26737054 | MS.gene073893:intron | 35.0% | |
| TCTTATGAGGGAGATACTTA+GGG | + | chr1.3:26736712-26736731 | MS.gene073893:intron | 35.0% | |
| TTCTGCTCCTAAACTTTAAG+TGG | + | chr1.3:26739881-26739900 | MS.gene073893:intron | 35.0% | |
| ! | AATGCCATCTATGAGTTTTG+GGG | - | chr1.3:26739753-26739772 | None:intergenic | 35.0% |
| ! | AATGCTTGGTTGTTGTTGTT+TGG | + | chr1.3:26737348-26737367 | MS.gene073893:intron | 35.0% |
| ! | CAAATGCCATCTATGAGTTT+TGG | - | chr1.3:26739755-26739774 | None:intergenic | 35.0% |
| ! | GACGTTTAGATTTTGCAGTA+AGG | + | chr1.3:26737168-26737187 | MS.gene073893:intron | 35.0% |
| ! | GCTTTCTAGCAGAAATAAGA+CGG | - | chr1.3:26738740-26738759 | None:intergenic | 35.0% |
| !! | CAGGTTTTGGTAAATAACGA+TGG | + | chr1.3:26738052-26738071 | MS.gene073893:intron | 35.0% |
| !! | GAATAGTTGATGGCTTTGAT+TGG | + | chr1.3:26738474-26738493 | MS.gene073893:intron | 35.0% |
| !!! | AGCTGTTCCTTCGAATTTTT+TGG | + | chr1.3:26739376-26739395 | MS.gene073893:intron | 35.0% |
| !!! | GCTGTTCCTTCGAATTTTTT+GGG | + | chr1.3:26739377-26739396 | MS.gene073893:intron | 35.0% |
| !!! | TTGTTGTTGCTGTCGTTTTT+TGG | + | chr1.3:26737604-26737623 | MS.gene073893:intron | 35.0% |
| AAACCAGACTTAGGTGGTTT+GGG | + | chr1.3:26737132-26737151 | MS.gene073893:intron | 40.0% | |
| AATTACAGTTTCGAGCCACA+TGG | - | chr1.3:26738354-26738373 | None:intergenic | 40.0% | |
| ACACTTCCTTCACATTGTGA+AGG | - | chr1.3:26738762-26738781 | None:intergenic | 40.0% | |
| ACTCTCACCAGCAAATCAAA+GGG | + | chr1.3:26738317-26738336 | MS.gene073893:CDS | 40.0% | |
| AGAAAGCCTTCACAATGTGA+AGG | + | chr1.3:26738753-26738772 | MS.gene073893:intron | 40.0% | |
| AGAGTAGATCAGATGAAGAG+TGG | + | chr1.3:26737191-26737210 | MS.gene073893:intron | 40.0% | |
| AGAGTGGTCAAATAGCTAGA+CGG | + | chr1.3:26737207-26737226 | MS.gene073893:intron | 40.0% | |
| AGGATGGGATTGAACCAAAA+TGG | + | chr1.3:26738261-26738280 | MS.gene073893:CDS | 40.0% | |
| ATAACTACAGGGATGACTTC+AGG | - | chr1.3:26739121-26739140 | None:intergenic | 40.0% | |
| ATTCTGAATGACAGCAAAGC+AGG | + | chr1.3:26739414-26739433 | MS.gene073893:intron | 40.0% | |
| GAAGGAACAGCTATAAGTTG+AGG | - | chr1.3:26739368-26739387 | None:intergenic | 40.0% | |
| GCAGAAGCCACTTAAAGTTT+AGG | - | chr1.3:26739891-26739910 | None:intergenic | 40.0% | |
| GCTTTGATTGGTGAGCAATT+TGG | + | chr1.3:26738486-26738505 | MS.gene073893:CDS | 40.0% | |
| GGATGGGATTGAACCAAAAT+GGG | + | chr1.3:26738262-26738281 | MS.gene073893:CDS | 40.0% | |
| GGCAAGACAAAATTTCGTTG+TGG | + | chr1.3:26738553-26738572 | MS.gene073893:CDS | 40.0% | |
| GTCATCCCTGTAGTTATTAG+TGG | + | chr1.3:26739124-26739143 | MS.gene073893:intron | 40.0% | |
| GTTAGACTTAAGGTGCATCT+GGG | + | chr1.3:26738802-26738821 | MS.gene073893:intron | 40.0% | |
| TGCAAAACTTCATCGCATTG+TGG | + | chr1.3:26739157-26739176 | MS.gene073893:intron | 40.0% | |
| TGTTAGACTTAAGGTGCATC+TGG | + | chr1.3:26738801-26738820 | MS.gene073893:intron | 40.0% | |
| TTCCTTAAACGTCGATGTTG+CGG | + | chr1.3:26739682-26739701 | MS.gene073893:intron | 40.0% | |
| ! | AAACTCTTCAACGGTATCGA+AGG | - | chr1.3:26736562-26736581 | None:intergenic | 40.0% |
| ! | ACGAAATTTTGTCTTGCCAC+TGG | - | chr1.3:26738551-26738570 | None:intergenic | 40.0% |
| ! | ATGAAGTTTTGCATAGTGGC+TGG | - | chr1.3:26739150-26739169 | None:intergenic | 40.0% |
| ! | CACCTTGTTTAGGTTTGGAT+TGG | - | chr1.3:26736506-26736525 | None:intergenic | 40.0% |
| ! | GAAGTGTTTGTGGTGAATGT+TGG | + | chr1.3:26738775-26738794 | MS.gene073893:intron | 40.0% |
| ! | GGTGGTGCGTTTTCTTTTTA+GGG | + | chr1.3:26736583-26736602 | MS.gene073893:intron | 40.0% |
| ! | TAGAGAGAAGATGGACTTTC+TGG | + | chr1.3:26736472-26736491 | MS.gene073893:CDS | 40.0% |
| ! | TCGATACCGTTGAAGAGTTT+TGG | + | chr1.3:26736562-26736581 | MS.gene073893:CDS | 40.0% |
| ! | TGCGATGAAGTTTTGCATAG+TGG | - | chr1.3:26739154-26739173 | None:intergenic | 40.0% |
| !! | AAGATTGCCCTTTGATTTGC+TGG | - | chr1.3:26738327-26738346 | None:intergenic | 40.0% |
| !! | ACATTCTGGTTTATGTCCAC+AGG | + | chr1.3:26739272-26739291 | MS.gene073893:intron | 40.0% |
| !! | ATACCGTTGAAGAGTTTTGG+TGG | + | chr1.3:26736565-26736584 | MS.gene073893:CDS | 40.0% |
| !! | CAATGTGAAGGAAGTGTTTG+TGG | + | chr1.3:26738765-26738784 | MS.gene073893:intron | 40.0% |
| !! | CGCTGACTTTCACTTGTTTA+AGG | + | chr1.3:26738241-26738260 | MS.gene073893:CDS | 40.0% |
| !! | TAAGTTTTAGCCTCCAAGGT+GGG | - | chr1.3:26739545-26739564 | None:intergenic | 40.0% |
| !! | TAATGCAGATGAGCATTGGA+AGG | + | chr1.3:26739801-26739820 | MS.gene073893:intron | 40.0% |
| !! | TGGTGGTGCGTTTTCTTTTT+AGG | + | chr1.3:26736582-26736601 | MS.gene073893:intron | 40.0% |
| !! | TTAAGTTTTAGCCTCCAAGG+TGG | - | chr1.3:26739546-26739565 | None:intergenic | 40.0% |
| ACAGCAGAACCAATCGTTGA+AGG | + | chr1.3:26736372-26736391 | MS.gene073893:CDS | 45.0% | |
| AGAGGAAATGACAGAACAGG+AGG | - | chr1.3:26739442-26739461 | None:intergenic | 45.0% | |
| AGATGGTCGAAACCAGACTT+AGG | + | chr1.3:26737123-26737142 | MS.gene073893:intron | 45.0% | |
| AGGAGAGGAAATGACAGAAC+AGG | - | chr1.3:26739445-26739464 | None:intergenic | 45.0% | |
| AGGGCAATCTTGATACCATG+TGG | + | chr1.3:26738336-26738355 | MS.gene073893:CDS | 45.0% | |
| ATCACTGTAGCAGCTGCAAT+TGG | - | chr1.3:26739202-26739221 | None:intergenic | 45.0% | |
| ATCAGAGAGAGAGAGAGAGT+TGG | + | chr1.3:26737078-26737097 | MS.gene073893:intron | 45.0% | |
| CAATGTAGTCCACCGAGTAA+AGG | - | chr1.3:26739716-26739735 | None:intergenic | 45.0% | |
| GAAACCAGACTTAGGTGGTT+TGG | + | chr1.3:26737131-26737150 | MS.gene073893:intron | 45.0% | |
| GACTCTCACCAGCAAATCAA+AGG | + | chr1.3:26738316-26738335 | MS.gene073893:CDS | 45.0% | |
| GATCACATTAACAACGCACC+TGG | - | chr1.3:26738605-26738624 | None:intergenic | 45.0% | |
| GCACCACCAAAACTCTTCAA+CGG | - | chr1.3:26736571-26736590 | None:intergenic | 45.0% | |
| GCTGGCCACTAATAACTACA+GGG | - | chr1.3:26739132-26739151 | None:intergenic | 45.0% | |
| GGAGTAAACCTTACGAAGAG+TGG | - | chr1.3:26736541-26736560 | None:intergenic | 45.0% | |
| TACCGCAACATCGACGTTTA+AGG | - | chr1.3:26739687-26739706 | None:intergenic | 45.0% | |
| TCAGAGAGAGAGAGAGAGTT+GGG | + | chr1.3:26737079-26737098 | MS.gene073893:intron | 45.0% | |
| TCATTTCCTCTCCTCCGAAA+GGG | + | chr1.3:26739451-26739470 | MS.gene073893:intron | 45.0% | |
| TGAGCAATTTGGAGACACTG+AGG | + | chr1.3:26738497-26738516 | MS.gene073893:CDS | 45.0% | |
| ! | AGCAGCACCTTGTTTAGGTT+TGG | - | chr1.3:26736511-26736530 | None:intergenic | 45.0% |
| !! | AACCTAAACAAGGTGCTGCT+TGG | + | chr1.3:26736511-26736530 | MS.gene073893:CDS | 45.0% |
| !! | AAGTTTTAGCCTCCAAGGTG+GGG | - | chr1.3:26739544-26739563 | None:intergenic | 45.0% |
| !! | ACCTAAACAAGGTGCTGCTT+GGG | + | chr1.3:26736512-26736531 | MS.gene073893:CDS | 45.0% |
| !! | AGAGGGTGTTTCAAAGAGCT+TGG | - | chr1.3:26739002-26739021 | None:intergenic | 45.0% |
| !! | AGATGAGCATTGGAAGGAAG+TGG | + | chr1.3:26739807-26739826 | MS.gene073893:intron | 45.0% |
| !! | GAGGGTGTTTCAAAGAGCTT+GGG | - | chr1.3:26739001-26739020 | None:intergenic | 45.0% |
| !!! | CATCGCATTGTGGTTTTGAG+TGG | + | chr1.3:26739167-26739186 | MS.gene073893:intron | 45.0% |
| !!! | TTGTGTTTTAGCCCTGTCTC+CGG | - | chr1.3:26736450-26736469 | None:intergenic | 45.0% |
| !!! | AAATTTTTTTTTTGAATTTA+TGG | + | chr1.3:26736623-26736642 | MS.gene073893:intron | 5.0% |
| AAAGCCGCACAAGATGAGGA+GGG | - | chr1.3:26739486-26739505 | None:intergenic | 50.0% | |
| AAGTGAAAGTCAGCGTTGCC+AGG | - | chr1.3:26738236-26738255 | None:intergenic | 50.0% | |
| AATCGTTGAAGGCTCTACCG+CGG | + | chr1.3:26736383-26736402 | MS.gene073893:CDS | 50.0% | |
| ACTACGTGGAGTCGACTACA+TGG | - | chr1.3:26737323-26737342 | None:intergenic | 50.0% | |
| AGTGTGCCAATGGAGGAAAG+TGG | + | chr1.3:26738294-26738313 | MS.gene073893:CDS | 50.0% | |
| ATGCCCAAACCACCTAAGTC+TGG | - | chr1.3:26737138-26737157 | None:intergenic | 50.0% | |
| CAGAGAGAGAGAGAGAGTTG+GGG | + | chr1.3:26737080-26737099 | MS.gene073893:intron | 50.0% | |
| CAGGAAGATGCTAAAACCCG+AGG | + | chr1.3:26739946-26739965 | MS.gene073893:intron | 50.0% | |
| CATCTTGTGCGGCTTTCTGA+TGG | + | chr1.3:26739490-26739509 | MS.gene073893:intron | 50.0% | |
| CCAAGCATTATCCCACTACG+TGG | - | chr1.3:26737337-26737356 | None:intergenic | 50.0% | |
| CTACAGGGATGACTTCAGGT+AGG | - | chr1.3:26739117-26739136 | None:intergenic | 50.0% | |
| CTTTCCTCCATTGGCACACT+CGG | - | chr1.3:26738294-26738313 | None:intergenic | 50.0% | |
| GAGAGTCCACTTTCCTCCAT+TGG | - | chr1.3:26738303-26738322 | None:intergenic | 50.0% | |
| GAGGGAAGATGAAGCCCTTT+CGG | - | chr1.3:26739468-26739487 | None:intergenic | 50.0% | |
| GCCACCCCAAAACTCATAGA+TGG | + | chr1.3:26739746-26739765 | MS.gene073893:intron | 50.0% | |
| GGAGACACTGAGGACATTTG+CGG | + | chr1.3:26738507-26738526 | MS.gene073893:CDS | 50.0% | |
| GGTCAAATAGCTAGACGGAG+AGG | + | chr1.3:26737212-26737231 | MS.gene073893:intron | 50.0% | |
| GTAGCAGCTGCAATTGGTAG+CGG | - | chr1.3:26739196-26739215 | None:intergenic | 50.0% | |
| GTCATTTCCTCTCCTCCGAA+AGG | + | chr1.3:26739450-26739469 | MS.gene073893:intron | 50.0% | |
| TAGTCCACCGAGTAAAGGTG+CGG | - | chr1.3:26739711-26739730 | None:intergenic | 50.0% | |
| TCAGAAAGCCGCACAAGATG+AGG | - | chr1.3:26739490-26739509 | None:intergenic | 50.0% | |
| TCTTCCCTCCTCATCTTGTG+CGG | + | chr1.3:26739479-26739498 | MS.gene073893:intron | 50.0% | |
| TGCTAAAACCCGAGGTGCAA+AGG | + | chr1.3:26739954-26739973 | MS.gene073893:CDS | 50.0% | |
| TGGTCGAAACCAGACTTAGG+TGG | + | chr1.3:26737126-26737145 | MS.gene073893:intron | 50.0% | |
| TGTATCGAGCCTTTGCACCT+CGG | - | chr1.3:26739966-26739985 | None:intergenic | 50.0% | |
| TTGGGGAACCACTCTTCGTA+AGG | + | chr1.3:26736530-26736549 | MS.gene073893:CDS | 50.0% | |
| TTTCCTCCATTGGCACACTC+GGG | - | chr1.3:26738293-26738312 | None:intergenic | 50.0% | |
| ! | ATGTAGTCGACTCCACGTAG+TGG | + | chr1.3:26737322-26737341 | MS.gene073893:intron | 50.0% |
| ! | CACCTGGTTCGACTCATTTG+CGG | - | chr1.3:26738589-26738608 | None:intergenic | 50.0% |
| ! | CACTCGGGATCTTCCCATTT+TGG | - | chr1.3:26738278-26738297 | None:intergenic | 50.0% |
| ! | CCACGTAGTGGGATAATGCT+TGG | + | chr1.3:26737334-26737353 | MS.gene073893:intron | 50.0% |
| ! | CTTAGGTGGTTTGGGCATGT+AGG | + | chr1.3:26737140-26737159 | MS.gene073893:intron | 50.0% |
| ! | GGCTGGCCACTAATAACTAC+AGG | - | chr1.3:26739133-26739152 | None:intergenic | 50.0% |
| ! | TGTAGTCGACTCCACGTAGT+GGG | + | chr1.3:26737323-26737342 | MS.gene073893:intron | 50.0% |
| !! | CCTAAACAAGGTGCTGCTTG+GGG | + | chr1.3:26736513-26736532 | MS.gene073893:CDS | 50.0% |
| !!! | CGCATTGTGGTTTTGAGTGG+CGG | + | chr1.3:26739170-26739189 | MS.gene073893:intron | 50.0% |
| !!! | GCCATCTATGAGTTTTGGGG+TGG | - | chr1.3:26739750-26739769 | None:intergenic | 50.0% |
| !!! | TCTATGAGTTTTGGGGTGGC+AGG | - | chr1.3:26739746-26739765 | None:intergenic | 50.0% |
| AAGTAGCTGACCCCACCTAG+TGG | + | chr1.3:26737563-26737582 | MS.gene073893:intron | 55.0% | |
| ACTAGGTGGGGTCAGCTACT+TGG | - | chr1.3:26737564-26737583 | None:intergenic | 55.0% | |
| AGCCGCAAATGAGTCGAACC+AGG | + | chr1.3:26738584-26738603 | MS.gene073893:CDS | 55.0% | |
| AGGGGGAAAACAGAAGCCTG+TGG | - | chr1.3:26739291-26739310 | None:intergenic | 55.0% | |
| AGTAGCTGACCCCACCTAGT+GGG | + | chr1.3:26737564-26737583 | MS.gene073893:intron | 55.0% | |
| AGTCGCCTTATCCCACTAGG+TGG | - | chr1.3:26737578-26737597 | None:intergenic | 55.0% | |
| ATGAAGCCCTTTCGGAGGAG+AGG | - | chr1.3:26739460-26739479 | None:intergenic | 55.0% | |
| CCAAGTCGCCTTATCCCACT+AGG | - | chr1.3:26737581-26737600 | None:intergenic | 55.0% | |
| CCTAGTGGGATAAGGCGACT+TGG | + | chr1.3:26737578-26737597 | MS.gene073893:intron | 55.0% | |
| CTAGACGGAGAGGAAGACCT+AGG | + | chr1.3:26737222-26737241 | MS.gene073893:intron | 55.0% | |
| GAAAGCCGCACAAGATGAGG+AGG | - | chr1.3:26739487-26739506 | None:intergenic | 55.0% | |
| GAAGATCCCGAGTGTGCCAA+TGG | + | chr1.3:26738284-26738303 | MS.gene073893:CDS | 55.0% | |
| GCGGTAGAGCCTTCAACGAT+TGG | - | chr1.3:26736384-26736403 | None:intergenic | 55.0% | |
| GGAAGATGAAGCCCTTTCGG+AGG | - | chr1.3:26739465-26739484 | None:intergenic | 55.0% | |
| GTATCGAGCCTTTGCACCTC+GGG | - | chr1.3:26739965-26739984 | None:intergenic | 55.0% | |
| GTCGCCTTATCCCACTAGGT+GGG | - | chr1.3:26737577-26737596 | None:intergenic | 55.0% | |
| TAGTTGTGAGTGTGCGCCAG+TGG | + | chr1.3:26738532-26738551 | MS.gene073893:CDS | 55.0% | |
| TCGCCTTATCCCACTAGGTG+GGG | - | chr1.3:26737576-26737595 | None:intergenic | 55.0% | |
| TGACCCCACCTAGTGGGATA+AGG | + | chr1.3:26737570-26737589 | MS.gene073893:intron | 55.0% | |
| TTCAAGCCCAGCAAGTTGCC+TGG | + | chr1.3:26738215-26738234 | MS.gene073893:CDS | 55.0% | |
| TTTAGCCTCCAAGGTGGGGA+TGG | - | chr1.3:26739540-26739559 | None:intergenic | 55.0% | |
| ! | AGTGGGATAAGGCGACTTGG+TGG | + | chr1.3:26737581-26737600 | MS.gene073893:intron | 55.0% |
| ! | CCCCAAGCAGCACCTTGTTT+AGG | - | chr1.3:26736516-26736535 | None:intergenic | 55.0% |
| ! | GGTGGTTTGGGCATGTAGGT+AGG | + | chr1.3:26737144-26737163 | MS.gene073893:intron | 55.0% |
| AGCGTTGCCAGGCAACTTGC+TGG | - | chr1.3:26738225-26738244 | None:intergenic | 60.0% | |
| GATCCCGAGTGTGCCAATGG+AGG | + | chr1.3:26738287-26738306 | MS.gene073893:CDS | 60.0% | |
| GCGGTAGCCGCACCTTTACT+CGG | + | chr1.3:26739701-26739720 | MS.gene073893:intron | 60.0% | |
| GTAGCCGCACCTTTACTCGG+TGG | + | chr1.3:26739704-26739723 | MS.gene073893:intron | 60.0% | |
| TACCGCGGCAGAGGAAGTTG+CGG | + | chr1.3:26736398-26736417 | MS.gene073893:CDS | 60.0% | |
| TCTAGCTGCCATCCCCACCT+TGG | + | chr1.3:26739529-26739548 | MS.gene073893:intron | 60.0% | |
| TTTAGCCCTGTCTCCGGTGC+CGG | - | chr1.3:26736444-26736463 | None:intergenic | 60.0% | |
| ! | GCGTTGCCAGGCAACTTGCT+GGG | - | chr1.3:26738224-26738243 | None:intergenic | 60.0% |
| AGCTGCCATCCCCACCTTGG+AGG | + | chr1.3:26739532-26739551 | MS.gene073893:intron | 65.0% | |
| GGAAGTTGCGGCGGCTGTTC+CGG | + | chr1.3:26736410-26736429 | MS.gene073893:CDS | 65.0% | |
| GGCTGTTCCGGTCCCTACAC+CGG | + | chr1.3:26736422-26736441 | MS.gene073893:CDS | 65.0% | |
| TGAAGGCTCTACCGCGGCAG+AGG | + | chr1.3:26736389-26736408 | MS.gene073893:CDS | 65.0% | |
| ! | CTACACCGGCACCGGAGACA+GGG | + | chr1.3:26736436-26736455 | MS.gene073893:CDS | 65.0% |
| !! | CTGTCTCCGGTGCCGGTGTA+GGG | - | chr1.3:26736437-26736456 | None:intergenic | 65.0% |
| CGCCGCAACTTCCTCTGCCG+CGG | - | chr1.3:26736403-26736422 | None:intergenic | 70.0% | |
| CGCGGCAGAGGAAGTTGCGG+CGG | + | chr1.3:26736401-26736420 | MS.gene073893:CDS | 70.0% | |
| TCCGGTCCCTACACCGGCAC+CGG | + | chr1.3:26736428-26736447 | MS.gene073893:CDS | 70.0% | |
| ! | CCTACACCGGCACCGGAGAC+AGG | + | chr1.3:26736435-26736454 | MS.gene073893:CDS | 70.0% |
| !! | CCTGTCTCCGGTGCCGGTGT+AGG | - | chr1.3:26736438-26736457 | None:intergenic | 70.0% |
| !! | TCCGGTGCCGGTGTAGGGAC+CGG | - | chr1.3:26736432-26736451 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 26736366 | 26739993 | 26736366 | ID=MS.gene073893 |
| chr1.3 | mRNA | 26736366 | 26739993 | 26736366 | ID=MS.gene073893.t1;Parent=MS.gene073893 |
| chr1.3 | exon | 26736366 | 26736586 | 26736366 | ID=MS.gene073893.t1.exon1;Parent=MS.gene073893.t1 |
| chr1.3 | CDS | 26736366 | 26736586 | 26736366 | ID=cds.MS.gene073893.t1;Parent=MS.gene073893.t1 |
| chr1.3 | exon | 26738199 | 26738367 | 26738199 | ID=MS.gene073893.t1.exon2;Parent=MS.gene073893.t1 |
| chr1.3 | CDS | 26738199 | 26738367 | 26738199 | ID=cds.MS.gene073893.t1;Parent=MS.gene073893.t1 |
| chr1.3 | exon | 26738480 | 26738605 | 26738480 | ID=MS.gene073893.t1.exon3;Parent=MS.gene073893.t1 |
| chr1.3 | CDS | 26738480 | 26738605 | 26738480 | ID=cds.MS.gene073893.t1;Parent=MS.gene073893.t1 |
| chr1.3 | exon | 26739809 | 26739874 | 26739809 | ID=MS.gene073893.t1.exon4;Parent=MS.gene073893.t1 |
| chr1.3 | CDS | 26739809 | 26739874 | 26739809 | ID=cds.MS.gene073893.t1;Parent=MS.gene073893.t1 |
| chr1.3 | exon | 26739949 | 26739993 | 26739949 | ID=MS.gene073893.t1.exon5;Parent=MS.gene073893.t1 |
| chr1.3 | CDS | 26739949 | 26739993 | 26739949 | ID=cds.MS.gene073893.t1;Parent=MS.gene073893.t1 |
| Gene Sequence |
| Protein sequence |
