Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49847.t1 | RHN58858.1 | 76 | 154 | 32 | 3 | 1 | 151 | 13 | 164 | 2.40E-54 | 222.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49847.t1 | Q9SKK2 | 37.4 | 155 | 86 | 5 | 1 | 146 | 5 | 157 | 3.1e-18 | 94.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49847.t1 | G7JP58 | 76.0 | 154 | 32 | 3 | 1 | 151 | 1 | 152 | 1.7e-54 | 222.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051544 | MS.gene49847 | 0.809541 | 1.80E-50 | -1.69E-46 |
| MS.gene054788 | MS.gene49847 | 0.808406 | 3.15E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene49847 | 0.808577 | 2.89E-50 | -1.69E-46 |
| MS.gene058426 | MS.gene49847 | 0.823018 | 1.74E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49847.t1 | MTR_4g015930 | 76.821 | 302 | 61 | 4 | 1 | 296 | 1 | 299 | 7.14e-141 | 422 |
| MS.gene49847.t1 | MTR_4g015930 | 76.821 | 302 | 61 | 4 | 1 | 296 | 1 | 299 | 8.21e-141 | 422 |
| MS.gene49847.t1 | MTR_4g015930 | 76.821 | 302 | 61 | 4 | 1 | 296 | 1 | 299 | 1.84e-140 | 423 |
| MS.gene49847.t1 | MTR_4g016810 | 64.120 | 301 | 51 | 5 | 1 | 296 | 1 | 249 | 2.97e-108 | 327 |
| MS.gene49847.t1 | MTR_4g016870 | 70.667 | 225 | 64 | 2 | 1 | 223 | 1 | 225 | 6.01e-104 | 304 |
| MS.gene49847.t1 | MTR_4g016850 | 58.586 | 297 | 115 | 6 | 1 | 293 | 1 | 293 | 3.96e-91 | 290 |
| MS.gene49847.t1 | MTR_4g016740 | 73.913 | 184 | 36 | 4 | 1 | 175 | 1 | 181 | 1.78e-81 | 244 |
| MS.gene49847.t1 | MTR_4g016790 | 62.011 | 179 | 54 | 4 | 1 | 165 | 1 | 179 | 1.60e-63 | 198 |
| MS.gene49847.t1 | MTR_4g015930 | 77.778 | 81 | 18 | 0 | 216 | 296 | 1 | 81 | 9.08e-31 | 122 |
| MS.gene49847.t1 | MTR_4g015930 | 34.118 | 170 | 109 | 3 | 125 | 293 | 7 | 174 | 1.99e-13 | 70.9 |
| MS.gene49847.t1 | MTR_4g015930 | 77.778 | 81 | 18 | 0 | 216 | 296 | 1 | 81 | 9.53e-31 | 122 |
| MS.gene49847.t1 | MTR_4g015930 | 34.118 | 170 | 109 | 3 | 125 | 293 | 7 | 174 | 2.06e-13 | 70.9 |
| MS.gene49847.t1 | MTR_4g015930 | 75.641 | 78 | 19 | 0 | 219 | 296 | 2 | 79 | 3.13e-28 | 114 |
| MS.gene49847.t1 | MTR_4g015930 | 34.706 | 170 | 108 | 3 | 125 | 293 | 5 | 172 | 7.90e-14 | 72.0 |
| MS.gene49847.t1 | MTR_2g016200 | 31.690 | 284 | 179 | 7 | 22 | 293 | 25 | 305 | 1.09e-22 | 98.6 |
| MS.gene49847.t1 | MTR_4g016800 | 44.186 | 172 | 89 | 5 | 125 | 293 | 6 | 173 | 7.12e-22 | 96.3 |
| MS.gene49847.t1 | MTR_4g016800 | 55.263 | 76 | 32 | 2 | 222 | 296 | 6 | 80 | 2.73e-12 | 67.4 |
| MS.gene49847.t1 | MTR_8g077110 | 40.000 | 105 | 59 | 2 | 25 | 126 | 26 | 129 | 5.33e-17 | 76.3 |
| MS.gene49847.t1 | MTR_5g069580 | 30.483 | 269 | 177 | 7 | 27 | 293 | 33 | 293 | 1.35e-16 | 80.5 |
| MS.gene49847.t1 | MTR_7g014960 | 32.850 | 207 | 111 | 9 | 27 | 233 | 13 | 191 | 3.57e-16 | 76.3 |
| MS.gene49847.t1 | MTR_7g010000 | 31.907 | 257 | 142 | 8 | 62 | 293 | 47 | 295 | 2.72e-15 | 76.6 |
| MS.gene49847.t1 | MTR_2g078260 | 31.466 | 232 | 147 | 8 | 64 | 293 | 62 | 283 | 5.67e-15 | 75.5 |
| MS.gene49847.t1 | MTR_6g015265 | 33.990 | 203 | 117 | 6 | 100 | 296 | 121 | 312 | 1.93e-14 | 73.9 |
| MS.gene49847.t1 | MTR_7g066620 | 32.275 | 189 | 102 | 3 | 108 | 293 | 22 | 187 | 6.76e-14 | 72.4 |
| MS.gene49847.t1 | MTR_6g015190 | 35.025 | 197 | 123 | 5 | 100 | 296 | 121 | 312 | 6.90e-14 | 72.4 |
| MS.gene49847.t1 | MTR_7g007630 | 32.353 | 238 | 149 | 7 | 62 | 295 | 66 | 295 | 7.71e-14 | 72.0 |
| MS.gene49847.t1 | MTR_2g449790 | 26.774 | 310 | 191 | 10 | 7 | 293 | 3 | 299 | 1.05e-13 | 72.0 |
| MS.gene49847.t1 | MTR_4g011860 | 32.323 | 198 | 125 | 7 | 16 | 212 | 10 | 199 | 1.49e-13 | 71.2 |
| MS.gene49847.t1 | MTR_0087s0050 | 29.909 | 331 | 151 | 13 | 27 | 292 | 31 | 345 | 1.60e-13 | 71.2 |
| MS.gene49847.t1 | MTR_5g043800 | 27.070 | 314 | 176 | 11 | 9 | 287 | 10 | 305 | 2.31e-13 | 69.7 |
| MS.gene49847.t1 | MTR_8g047220 | 34.375 | 192 | 123 | 3 | 105 | 296 | 136 | 324 | 3.01e-13 | 70.5 |
| MS.gene49847.t1 | MTR_2g029010 | 26.855 | 283 | 181 | 8 | 34 | 293 | 32 | 311 | 3.58e-13 | 70.1 |
| MS.gene49847.t1 | MTR_6g016060 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016090 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016120 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016085 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016100 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016055 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016115 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016075 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016070 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016065 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016105 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016110 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016095 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016125 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_6g016080 | 29.268 | 287 | 183 | 11 | 14 | 292 | 18 | 292 | 4.69e-13 | 69.3 |
| MS.gene49847.t1 | MTR_5g047390 | 29.680 | 219 | 148 | 4 | 27 | 244 | 38 | 251 | 5.09e-13 | 69.7 |
| MS.gene49847.t1 | MTR_2g032560 | 31.034 | 290 | 173 | 10 | 12 | 289 | 197 | 471 | 5.14e-13 | 69.7 |
| MS.gene49847.t1 | MTR_2g014560 | 33.854 | 192 | 101 | 3 | 105 | 296 | 135 | 300 | 5.64e-13 | 69.7 |
| MS.gene49847.t1 | MTR_6g016130 | 28.920 | 287 | 186 | 10 | 14 | 293 | 18 | 293 | 8.54e-13 | 68.9 |
| MS.gene49847.t1 | MTR_0491s0030 | 35.071 | 211 | 110 | 5 | 105 | 291 | 132 | 339 | 8.97e-13 | 68.9 |
| MS.gene49847.t1 | MTR_0491s0030 | 30.508 | 236 | 153 | 6 | 62 | 296 | 47 | 272 | 1.88e-11 | 65.1 |
| MS.gene49847.t1 | MTR_0474s0020 | 29.553 | 291 | 178 | 8 | 13 | 290 | 9 | 285 | 1.51e-12 | 67.0 |
| MS.gene49847.t1 | MTR_7g009570 | 29.720 | 286 | 167 | 13 | 27 | 293 | 35 | 305 | 1.82e-12 | 68.2 |
| MS.gene49847.t1 | MTR_6g016050 | 29.710 | 276 | 176 | 10 | 25 | 293 | 1125 | 1389 | 1.86e-12 | 68.2 |
| MS.gene49847.t1 | MTR_5g085920 | 30.000 | 250 | 127 | 10 | 22 | 262 | 70 | 280 | 2.17e-12 | 67.8 |
| MS.gene49847.t1 | MTR_4g417270 | 33.163 | 196 | 115 | 7 | 105 | 293 | 280 | 466 | 5.93e-12 | 66.6 |
| MS.gene49847.t1 | MTR_7g009540 | 29.630 | 297 | 170 | 16 | 13 | 291 | 24 | 299 | 6.14e-12 | 66.2 |
| MS.gene49847.t1 | MTR_6g037750 | 28.912 | 294 | 175 | 13 | 5 | 279 | 9 | 287 | 6.66e-12 | 66.6 |
| MS.gene49847.t1 | MTR_2g078810 | 29.434 | 265 | 157 | 8 | 53 | 293 | 55 | 313 | 7.72e-12 | 66.2 |
| MS.gene49847.t1 | MTR_2g078810 | 29.434 | 265 | 157 | 8 | 53 | 293 | 75 | 333 | 9.31e-12 | 65.9 |
| MS.gene49847.t1 | MTR_7g014430 | 32.491 | 277 | 164 | 11 | 27 | 293 | 30 | 293 | 1.00e-11 | 65.9 |
| MS.gene49847.t1 | MTR_1g101250 | 29.967 | 307 | 165 | 10 | 27 | 293 | 29 | 325 | 1.07e-11 | 65.9 |
| MS.gene49847.t1 | MTR_3g048910 | 28.267 | 329 | 165 | 9 | 19 | 285 | 18 | 337 | 1.13e-11 | 65.5 |
| MS.gene49847.t1 | MTR_7g007560 | 30.544 | 239 | 150 | 6 | 62 | 295 | 48 | 275 | 1.19e-11 | 65.5 |
| MS.gene49847.t1 | MTR_7g007560 | 33.333 | 189 | 124 | 2 | 105 | 293 | 136 | 322 | 9.69e-11 | 62.8 |
| MS.gene49847.t1 | MTR_7g073290 | 32.124 | 193 | 123 | 4 | 105 | 293 | 296 | 484 | 1.54e-11 | 65.5 |
| MS.gene49847.t1 | MTR_7g073290 | 31.980 | 197 | 118 | 5 | 107 | 295 | 346 | 534 | 5.47e-11 | 63.5 |
| MS.gene49847.t1 | MTR_4g065850 | 29.524 | 210 | 120 | 5 | 108 | 293 | 133 | 338 | 1.55e-11 | 64.7 |
| MS.gene49847.t1 | MTR_6g016195 | 28.526 | 312 | 176 | 12 | 14 | 293 | 16 | 312 | 1.62e-11 | 65.1 |
| MS.gene49847.t1 | MTR_6g016140 | 28.352 | 261 | 168 | 9 | 14 | 269 | 18 | 264 | 2.51e-11 | 64.7 |
| MS.gene49847.t1 | MTR_5g085970 | 33.862 | 189 | 93 | 8 | 26 | 190 | 46 | 226 | 2.95e-11 | 64.3 |
| MS.gene49847.t1 | MTR_1g069470 | 26.007 | 273 | 156 | 8 | 29 | 296 | 24 | 255 | 3.88e-11 | 63.9 |
| MS.gene49847.t1 | MTR_6g016210 | 27.365 | 296 | 192 | 10 | 10 | 293 | 9 | 293 | 4.01e-11 | 63.9 |
| MS.gene49847.t1 | MTR_7g009790 | 29.866 | 298 | 166 | 15 | 21 | 291 | 22 | 303 | 4.57e-11 | 63.9 |
| MS.gene49847.t1 | MTR_7g009970 | 32.365 | 241 | 136 | 10 | 65 | 295 | 65 | 288 | 4.70e-11 | 63.9 |
| MS.gene49847.t1 | MTR_1g096270 | 31.120 | 241 | 152 | 7 | 56 | 293 | 46 | 275 | 4.91e-11 | 63.9 |
| MS.gene49847.t1 | MTR_7g066640 | 32.512 | 203 | 101 | 10 | 26 | 218 | 17 | 193 | 5.32e-11 | 61.2 |
| MS.gene49847.t1 | MTR_6g038820 | 27.063 | 303 | 195 | 9 | 11 | 296 | 20 | 313 | 5.48e-11 | 63.2 |
| MS.gene49847.t1 | MTR_3g048740 | 30.508 | 295 | 161 | 11 | 21 | 285 | 28 | 308 | 6.18e-11 | 63.5 |
| MS.gene49847.t1 | MTR_3g093930 | 26.433 | 314 | 173 | 11 | 28 | 293 | 39 | 342 | 9.19e-11 | 62.8 |
| MS.gene49847.t1 | MTR_8g047230 | 33.684 | 190 | 121 | 4 | 105 | 293 | 159 | 344 | 9.21e-11 | 62.8 |
| MS.gene49847.t1 | MTR_6g034410 | 32.948 | 173 | 97 | 8 | 27 | 191 | 38 | 199 | 9.49e-11 | 62.8 |
| MS.gene49847.t1 | MTR_5g085910 | 29.752 | 242 | 130 | 11 | 27 | 263 | 43 | 249 | 9.51e-11 | 62.8 |
| MS.gene49847.t1 | MTR_7g098610 | 28.947 | 190 | 124 | 4 | 111 | 296 | 81 | 263 | 9.78e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49847.t1 | AT1G58190 | 36.842 | 285 | 158 | 7 | 19 | 293 | 20 | 292 | 1.79e-39 | 147 |
| MS.gene49847.t1 | AT1G58190 | 32.367 | 207 | 113 | 4 | 105 | 285 | 198 | 403 | 3.02e-13 | 70.5 |
| MS.gene49847.t1 | AT2G25470 | 33.993 | 303 | 163 | 8 | 1 | 293 | 5 | 280 | 4.00e-37 | 140 |
| MS.gene49847.t1 | AT2G25470 | 33.993 | 303 | 163 | 8 | 1 | 293 | 5 | 280 | 4.54e-37 | 140 |
| MS.gene49847.t1 | AT2G25470 | 34.722 | 288 | 151 | 8 | 16 | 293 | 2 | 262 | 3.52e-36 | 137 |
| MS.gene49847.t1 | AT1G58190 | 36.691 | 278 | 160 | 7 | 19 | 291 | 20 | 286 | 1.12e-35 | 136 |
| MS.gene49847.t1 | AT5G49290 | 33.448 | 290 | 161 | 7 | 11 | 293 | 11 | 275 | 4.76e-32 | 125 |
| MS.gene49847.t1 | AT5G49290 | 36.905 | 168 | 75 | 5 | 104 | 264 | 176 | 319 | 7.27e-11 | 63.2 |
| MS.gene49847.t1 | AT5G49290 | 33.448 | 290 | 161 | 7 | 11 | 293 | 11 | 275 | 5.98e-32 | 125 |
| MS.gene49847.t1 | AT5G49290 | 36.905 | 168 | 75 | 5 | 104 | 264 | 176 | 319 | 6.38e-11 | 63.5 |
| MS.gene49847.t1 | AT5G49290 | 34.058 | 276 | 150 | 7 | 25 | 293 | 11 | 261 | 7.41e-32 | 125 |
| MS.gene49847.t1 | AT5G49290 | 36.905 | 168 | 75 | 5 | 104 | 264 | 162 | 305 | 5.96e-11 | 63.5 |
| MS.gene49847.t1 | AT5G49290 | 34.058 | 276 | 150 | 7 | 25 | 293 | 11 | 261 | 7.41e-32 | 125 |
| MS.gene49847.t1 | AT5G49290 | 36.905 | 168 | 75 | 5 | 104 | 264 | 162 | 305 | 5.96e-11 | 63.5 |
| MS.gene49847.t1 | AT5G49290 | 34.058 | 276 | 150 | 7 | 25 | 293 | 11 | 261 | 7.41e-32 | 125 |
| MS.gene49847.t1 | AT5G49290 | 36.905 | 168 | 75 | 5 | 104 | 264 | 162 | 305 | 5.96e-11 | 63.5 |
| MS.gene49847.t1 | AT1G58190 | 35.507 | 276 | 160 | 8 | 27 | 296 | 37 | 300 | 3.93e-31 | 123 |
| MS.gene49847.t1 | AT3G53240 | 36.559 | 279 | 148 | 12 | 24 | 283 | 3 | 271 | 3.29e-30 | 120 |
| MS.gene49847.t1 | AT5G49290 | 35.662 | 272 | 141 | 9 | 25 | 264 | 11 | 280 | 4.56e-30 | 120 |
| MS.gene49847.t1 | AT1G74170 | 33.119 | 311 | 167 | 8 | 1 | 296 | 1 | 285 | 8.29e-30 | 119 |
| MS.gene49847.t1 | AT1G74190 | 34.768 | 302 | 174 | 10 | 11 | 293 | 11 | 308 | 5.35e-28 | 114 |
| MS.gene49847.t1 | AT1G54470 | 34.182 | 275 | 155 | 9 | 11 | 270 | 110 | 373 | 7.83e-28 | 112 |
| MS.gene49847.t1 | AT1G74180 | 34.237 | 295 | 157 | 8 | 11 | 295 | 11 | 278 | 1.26e-26 | 110 |
| MS.gene49847.t1 | AT1G74180 | 34.483 | 290 | 153 | 8 | 16 | 295 | 2 | 264 | 2.32e-26 | 109 |
| MS.gene49847.t1 | AT1G07390 | 30.952 | 294 | 185 | 6 | 11 | 287 | 19 | 311 | 3.23e-25 | 105 |
| MS.gene49847.t1 | AT1G07390 | 30.952 | 294 | 185 | 6 | 11 | 287 | 19 | 311 | 3.39e-25 | 105 |
| MS.gene49847.t1 | AT5G49290 | 33.333 | 246 | 134 | 6 | 53 | 293 | 13 | 233 | 3.29e-24 | 103 |
| MS.gene49847.t1 | AT5G49290 | 36.905 | 168 | 75 | 5 | 104 | 264 | 134 | 277 | 5.55e-11 | 63.5 |
| MS.gene49847.t1 | AT3G53240 | 35.417 | 240 | 130 | 9 | 61 | 283 | 4 | 235 | 1.31e-22 | 98.2 |
| MS.gene49847.t1 | AT3G53240 | 35.417 | 240 | 130 | 9 | 61 | 283 | 4 | 235 | 1.31e-22 | 98.2 |
| MS.gene49847.t1 | AT5G49290 | 35.124 | 242 | 125 | 8 | 53 | 264 | 13 | 252 | 2.14e-22 | 97.8 |
| MS.gene49847.t1 | AT1G07390 | 30.483 | 269 | 172 | 5 | 33 | 287 | 1 | 268 | 1.04e-19 | 89.7 |
| MS.gene49847.t1 | AT1G07390 | 30.483 | 269 | 172 | 5 | 33 | 287 | 1 | 268 | 1.17e-19 | 89.7 |
| MS.gene49847.t1 | AT4G04220 | 30.375 | 293 | 170 | 8 | 27 | 289 | 24 | 312 | 1.93e-18 | 85.9 |
| MS.gene49847.t1 | AT1G74170 | 33.195 | 241 | 121 | 7 | 70 | 296 | 3 | 217 | 1.01e-17 | 84.0 |
| MS.gene49847.t1 | AT3G02130 | 34.826 | 201 | 118 | 6 | 100 | 296 | 121 | 312 | 5.57e-15 | 75.9 |
| MS.gene49847.t1 | AT3G02130 | 34.826 | 201 | 118 | 6 | 100 | 296 | 138 | 329 | 6.13e-15 | 75.5 |
| MS.gene49847.t1 | AT3G28040 | 31.615 | 291 | 180 | 11 | 9 | 293 | 10 | 287 | 2.17e-14 | 73.9 |
| MS.gene49847.t1 | AT3G05360 | 28.667 | 300 | 176 | 11 | 10 | 293 | 20 | 297 | 2.50e-14 | 73.6 |
| MS.gene49847.t1 | AT3G11080 | 30.033 | 303 | 169 | 12 | 27 | 293 | 38 | 333 | 5.83e-14 | 72.8 |
| MS.gene49847.t1 | AT3G11080 | 30.033 | 303 | 169 | 12 | 27 | 293 | 38 | 333 | 5.83e-14 | 72.8 |
| MS.gene49847.t1 | AT4G39270 | 30.233 | 258 | 124 | 7 | 64 | 293 | 58 | 287 | 6.19e-14 | 72.4 |
| MS.gene49847.t1 | AT4G39270 | 30.233 | 258 | 124 | 7 | 64 | 293 | 58 | 287 | 7.36e-14 | 72.4 |
| MS.gene49847.t1 | AT4G39270 | 29.771 | 262 | 128 | 7 | 60 | 293 | 54 | 287 | 9.38e-14 | 72.0 |
| MS.gene49847.t1 | AT4G39270 | 29.771 | 262 | 128 | 7 | 60 | 293 | 54 | 287 | 9.38e-14 | 72.0 |
| MS.gene49847.t1 | AT4G39270 | 29.771 | 262 | 128 | 7 | 60 | 293 | 54 | 287 | 9.38e-14 | 72.0 |
| MS.gene49847.t1 | AT4G39270 | 29.771 | 262 | 128 | 7 | 60 | 293 | 54 | 287 | 9.38e-14 | 72.0 |
| MS.gene49847.t1 | AT4G39270 | 29.771 | 262 | 128 | 7 | 60 | 293 | 54 | 287 | 9.38e-14 | 72.0 |
| MS.gene49847.t1 | AT4G28490 | 30.453 | 243 | 159 | 6 | 53 | 293 | 42 | 276 | 9.39e-14 | 72.0 |
| MS.gene49847.t1 | AT4G13880 | 31.959 | 291 | 160 | 12 | 27 | 293 | 34 | 310 | 1.01e-13 | 72.0 |
| MS.gene49847.t1 | AT4G39270 | 30.233 | 258 | 124 | 7 | 64 | 293 | 58 | 287 | 1.04e-13 | 71.6 |
| MS.gene49847.t1 | AT4G39270 | 30.233 | 258 | 124 | 7 | 64 | 293 | 58 | 287 | 1.04e-13 | 71.6 |
| MS.gene49847.t1 | AT4G39270 | 30.233 | 258 | 124 | 7 | 64 | 293 | 58 | 287 | 1.04e-13 | 71.6 |
| MS.gene49847.t1 | AT5G53890 | 30.651 | 261 | 149 | 9 | 55 | 291 | 42 | 294 | 5.05e-13 | 69.7 |
| MS.gene49847.t1 | AT1G13910 | 28.387 | 310 | 176 | 10 | 10 | 287 | 11 | 306 | 1.03e-12 | 67.8 |
| MS.gene49847.t1 | AT1G13910 | 28.425 | 292 | 164 | 9 | 10 | 269 | 11 | 289 | 3.45e-12 | 66.2 |
| MS.gene49847.t1 | AT5G40170 | 30.645 | 248 | 144 | 9 | 49 | 287 | 65 | 293 | 3.70e-12 | 67.0 |
| MS.gene49847.t1 | AT3G05660 | 30.182 | 275 | 151 | 11 | 27 | 293 | 30 | 271 | 3.89e-12 | 67.0 |
| MS.gene49847.t1 | AT3G11010 | 30.357 | 280 | 170 | 11 | 27 | 293 | 38 | 305 | 3.94e-12 | 67.0 |
| MS.gene49847.t1 | AT3G11010 | 32.780 | 241 | 150 | 9 | 55 | 293 | 12 | 242 | 5.14e-12 | 66.6 |
| MS.gene49847.t1 | AT1G71390 | 27.458 | 295 | 170 | 9 | 27 | 293 | 37 | 315 | 8.67e-12 | 65.9 |
| MS.gene49847.t1 | AT3G11010 | 28.417 | 278 | 178 | 8 | 27 | 293 | 38 | 305 | 8.93e-12 | 66.2 |
| MS.gene49847.t1 | AT3G11010 | 30.544 | 239 | 158 | 6 | 55 | 293 | 12 | 242 | 9.17e-12 | 65.9 |
| MS.gene49847.t1 | AT5G51350 | 29.167 | 264 | 154 | 6 | 57 | 293 | 56 | 313 | 9.59e-12 | 65.9 |
| MS.gene49847.t1 | AT1G71390 | 27.458 | 295 | 170 | 9 | 27 | 293 | 32 | 310 | 9.66e-12 | 65.9 |
| MS.gene49847.t1 | AT1G74360 | 29.889 | 271 | 175 | 9 | 28 | 296 | 38 | 295 | 1.62e-11 | 65.5 |
| MS.gene49847.t1 | AT3G11010 | 29.054 | 296 | 168 | 12 | 27 | 293 | 38 | 320 | 4.25e-11 | 63.9 |
| MS.gene49847.t1 | AT3G11010 | 31.897 | 232 | 130 | 9 | 55 | 268 | 12 | 233 | 4.52e-11 | 63.9 |
| MS.gene49847.t1 | AT4G20940 | 30.137 | 292 | 165 | 11 | 30 | 293 | 7 | 287 | 4.96e-11 | 63.9 |
| MS.gene49847.t1 | AT1G17240 | 27.974 | 311 | 141 | 9 | 63 | 293 | 80 | 387 | 5.17e-11 | 63.5 |
| MS.gene49847.t1 | AT5G10020 | 31.532 | 222 | 118 | 9 | 100 | 293 | 165 | 380 | 5.34e-11 | 63.9 |
| MS.gene49847.t1 | AT4G36180 | 30.000 | 190 | 122 | 4 | 108 | 293 | 310 | 492 | 5.58e-11 | 63.5 |
| MS.gene49847.t1 | AT1G17240 | 27.974 | 311 | 141 | 9 | 63 | 293 | 75 | 382 | 5.97e-11 | 63.5 |
| MS.gene49847.t1 | AT5G01890 | 26.688 | 311 | 189 | 10 | 7 | 293 | 6 | 301 | 8.05e-11 | 63.2 |
| MS.gene49847.t1 | AT2G26380 | 27.653 | 311 | 181 | 13 | 16 | 295 | 18 | 315 | 8.51e-11 | 62.8 |
Find 55 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTAGACCTTTCAGAAAA+TGG | 0.168748 | 4.2:-85290636 | MS.gene49847:CDS |
| TTGGAGACATTAGATCTTTC+AGG | 0.199164 | 4.2:-85291053 | MS.gene49847:CDS |
| GAGATAGCAATTGTTGTTCT+TGG | 0.204667 | 4.2:-85293422 | MS.gene49847:CDS |
| GAAACATTTAACATAATAAA+AGG | 0.215562 | 4.2:+85293324 | None:intergenic |
| AATTGTTCTCTCTCCACTTT+AGG | 0.232687 | 4.2:-85290537 | MS.gene49847:intron |
| TCAATGTTAGAAAATATAAA+AGG | 0.236092 | 4.2:+85293574 | None:intergenic |
| CGACTATTCTAAATATGAAT+TGG | 0.275286 | 4.2:-85293463 | MS.gene49847:CDS |
| TAGTTCTAGCCAGCTAAATT+TGG | 0.298517 | 4.2:+85290422 | None:intergenic |
| TGGAGACATTAGACCTTTCA+TGG | 0.311345 | 4.2:-85292389 | MS.gene49847:CDS |
| GCTCTAACAACTTTGAAGTT+TGG | 0.316753 | 4.2:-85290984 | MS.gene49847:CDS |
| ATTTAGCTGGCTAGAACTAT+TGG | 0.320314 | 4.2:-85290418 | MS.gene49847:CDS |
| TGCATGGATTCACAGCATTA+AGG | 0.323884 | 4.2:-85290587 | MS.gene49847:CDS |
| CAATCCAAGAATTACTATAT+TGG | 0.349550 | 4.2:-85293350 | MS.gene49847:CDS |
| CCAGCCTTGAATTCTGTTGT+AGG | 0.363654 | 4.2:+85293260 | None:intergenic |
| GGGTCCAATATAGTAATTCT+TGG | 0.365029 | 4.2:+85293346 | None:intergenic |
| CTAAATATGAATTGGGTTCA+TGG | 0.366049 | 4.2:-85293455 | MS.gene49847:CDS |
| GTCAAGTTTGAATGGATTAA+CGG | 0.374640 | 4.2:-85292343 | MS.gene49847:CDS |
| AGCATCTTGTCAAGTTTGAA+TGG | 0.401026 | 4.2:-85292351 | MS.gene49847:CDS |
| GAAGGAGAGAATAGGGCTGT+TGG | 0.414043 | 4.2:-85293514 | MS.gene49847:CDS |
| GCTTAGAGAAGGAGAGAATA+GGG | 0.421189 | 4.2:-85293521 | MS.gene49847:CDS |
| ATTGAAATGTATACCTAAAG+TGG | 0.422227 | 4.2:+85290524 | None:intergenic |
| GACTATTCTAAATATGAATT+GGG | 0.424205 | 4.2:-85293462 | MS.gene49847:CDS |
| GTTTCCTAGACTTAAAAGAT+TGG | 0.424986 | 4.2:-85291072 | MS.gene49847:CDS |
| TCTTAGACCTTTCAGAAAAT+GGG | 0.427830 | 4.2:-85290635 | MS.gene49847:CDS |
| AAACATTTAACATAATAAAA+GGG | 0.434258 | 4.2:+85293325 | None:intergenic |
| TGTTTCACTATTCCGTCCAT+TGG | 0.452406 | 4.2:-85293307 | MS.gene49847:CDS |
| TTGTCCTACAACAGAATTCA+AGG | 0.464240 | 4.2:-85293264 | MS.gene49847:CDS |
| TAAATATGAATTGGGTTCAT+GGG | 0.473518 | 4.2:-85293454 | MS.gene49847:CDS |
| TGGAGACATTAGATCTTTCA+GGG | 0.480082 | 4.2:-85291052 | MS.gene49847:CDS |
| TCTGAGATCAAAGGAGTTGG+AGG | 0.494297 | 4.2:-85290658 | MS.gene49847:CDS |
| TGCTTAGAGAAGGAGAGAAT+AGG | 0.500141 | 4.2:-85293522 | MS.gene49847:CDS |
| ATTTCTGAGATCAAAGGAGT+TGG | 0.503817 | 4.2:-85290661 | MS.gene49847:CDS |
| ACTGGTTCTCTATATGTTGA+AGG | 0.509344 | 4.2:-85290375 | None:intergenic |
| AAGTGCTCTAGCATCTCTTC+TGG | 0.509609 | 4.2:-85293390 | MS.gene49847:CDS |
| ATGGAAAACTTCTCAGCTCA+AGG | 0.510149 | 4.2:-85290951 | MS.gene49847:intron |
| AACAGAATTCAAGGCTGGAT+TGG | 0.521956 | 4.2:-85293255 | MS.gene49847:CDS |
| GCAGTCAATCCATTTAAACT+TGG | 0.528828 | 4.2:+85291005 | None:intergenic |
| CAATGTTAGAAAATATAAAA+GGG | 0.533699 | 4.2:+85293575 | None:intergenic |
| TTGAGTGGTAATCATCGTAC+TGG | 0.538981 | 4.2:-85290393 | MS.gene49847:CDS |
| TATTTAGAAGATTCCATGAA+AGG | 0.539236 | 4.2:+85292376 | None:intergenic |
| GATAATAACTTCTTCACTCA+AGG | 0.545439 | 4.2:-85292285 | MS.gene49847:intron |
| CCTACAACAGAATTCAAGGC+TGG | 0.554518 | 4.2:-85293260 | MS.gene49847:CDS |
| TCAAGGATTTCTGAGATCAA+AGG | 0.560683 | 4.2:-85290667 | MS.gene49847:intron |
| TCCGTCCATTGGAAGAGCTA+CGG | 0.562648 | 4.2:-85293296 | MS.gene49847:CDS |
| AACATCATATCAAGTTTGCA+TGG | 0.579307 | 4.2:-85290603 | MS.gene49847:CDS |
| GCCGTAGCTCTTCCAATGGA+CGG | 0.583461 | 4.2:+85293295 | None:intergenic |
| ATGTAGCGGTTGCTTAGAGA+AGG | 0.583812 | 4.2:-85293532 | MS.gene49847:CDS |
| GCTCTAACAACTTTGAACCT+CGG | 0.586567 | 4.2:-85292321 | MS.gene49847:CDS |
| TTCTGTTGTAGGACAAGTCG+AGG | 0.590054 | 4.2:+85293271 | None:intergenic |
| AGGAGCCGTAGCTCTTCCAA+TGG | 0.596112 | 4.2:+85293291 | None:intergenic |
| TATCTATGTTGTTAAAACCG+AGG | 0.598519 | 4.2:+85292304 | None:intergenic |
| AACATTTAACATAATAAAAG+GGG | 0.617341 | 4.2:+85293326 | None:intergenic |
| CTAGAACTATTGGACTTGAG+TGG | 0.621176 | 4.2:-85290408 | MS.gene49847:CDS |
| ATGCAAAATCAAAGATGTAG+CGG | 0.642821 | 4.2:-85293546 | MS.gene49847:CDS |
| CAAGGCTGGATTGGCAACGA+AGG | 0.651484 | 4.2:-85293246 | MS.gene49847:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGAAAGTAAATAATA+CGG | - | chr4.2:85292089-85292108 | MS.gene49847:intron | 10.0% |
| !! | AAACATTTAACATAATAAAA+GGG | + | chr4.2:85290654-85290673 | None:intergenic | 10.0% |
| !! | ATTTGTCTAAAAATTTAAAT+AGG | + | chr4.2:85292681-85292700 | None:intergenic | 10.0% |
| !! | GTTAAAAATTAATATTTACT+TGG | + | chr4.2:85293126-85293145 | None:intergenic | 10.0% |
| !! | TAAAAATTAATATTTACTTG+GGG | + | chr4.2:85293124-85293143 | None:intergenic | 10.0% |
| !! | TTAAAGAAATGTTATATATA+AGG | + | chr4.2:85290768-85290787 | None:intergenic | 10.0% |
| !! | TTCATAAATTCTTTAATTAA+AGG | - | chr4.2:85292650-85292669 | MS.gene49847:intron | 10.0% |
| !! | TTGTTTCAATAATTTATTTA+TGG | - | chr4.2:85293054-85293073 | MS.gene49847:intron | 10.0% |
| !!! | TTATTTACTTTCTTTTTTTA+AGG | + | chr4.2:85292087-85292106 | None:intergenic | 10.0% |
| !! | AACATTTAACATAATAAAAG+GGG | + | chr4.2:85290653-85290672 | None:intergenic | 15.0% |
| !! | CAATGTTAGAAAATATAAAA+GGG | + | chr4.2:85290404-85290423 | None:intergenic | 15.0% |
| !! | CTCACATAATAATATTATTT+AGG | - | chr4.2:85292454-85292473 | MS.gene49847:intron | 15.0% |
| !! | CTTTAAATAAAATGAAAAAG+TGG | - | chr4.2:85293158-85293177 | MS.gene49847:intron | 15.0% |
| !! | GAAACATTTAACATAATAAA+AGG | + | chr4.2:85290655-85290674 | None:intergenic | 15.0% |
| !! | GAATTGAAATTAATTAACAA+AGG | - | chr4.2:85293198-85293217 | MS.gene49847:intron | 15.0% |
| !! | TAGTAAATAAATGAAGAATA+AGG | + | chr4.2:85292268-85292287 | None:intergenic | 15.0% |
| !! | TCAATGTTAGAAAATATAAA+AGG | + | chr4.2:85290405-85290424 | None:intergenic | 15.0% |
| !!! | TAATTTCACAGATTAATTTT+AGG | + | chr4.2:85292512-85292531 | None:intergenic | 15.0% |
| !!! | TTCATGAATTTTTTTTAAAG+AGG | - | chr4.2:85292395-85292414 | MS.gene49847:CDS | 15.0% |
| !! | AGTGTTATATATAAGTACTA+AGG | + | chr4.2:85291810-85291829 | None:intergenic | 20.0% |
| !! | ATCATTATGTATATTGTTCA+AGG | - | chr4.2:85293292-85293311 | MS.gene49847:CDS | 20.0% |
| !! | CAAATAGTCATTAAAATTCA+TGG | - | chr4.2:85292364-85292383 | MS.gene49847:CDS | 20.0% |
| !! | CTATTTACAACACTATAAAA+AGG | + | chr4.2:85291123-85291142 | None:intergenic | 20.0% |
| !! | GACTATTCTAAATATGAATT+GGG | - | chr4.2:85290514-85290533 | MS.gene49847:intron | 20.0% |
| !! | TAAAAAAAATTCATGAACGT+GGG | + | chr4.2:85292392-85292411 | None:intergenic | 20.0% |
| !! | TATATTTCTCCCTTTATAAA+AGG | + | chr4.2:85292178-85292197 | None:intergenic | 20.0% |
| !! | TATTTACAATATCTTGCATA+TGG | - | chr4.2:85291902-85291921 | MS.gene49847:intron | 20.0% |
| !! | TTAAAAAAAATTCATGAACG+TGG | + | chr4.2:85292393-85292412 | None:intergenic | 20.0% |
| !!! | AAATTTTTAGACAAATTGAG+TGG | - | chr4.2:85292685-85292704 | MS.gene49847:intron | 20.0% |
| !!! | AAGAGAGATATTTTTCTTAT+AGG | - | chr4.2:85291072-85291091 | MS.gene49847:CDS | 20.0% |
| !!! | AATAAGTGTTGTACATAATA+TGG | - | chr4.2:85292055-85292074 | MS.gene49847:intron | 20.0% |
| !!! | AGAGAGATATTTTTCTTATA+GGG | - | chr4.2:85291073-85291092 | MS.gene49847:CDS | 20.0% |
| !!! | CTTATTATGTTTCTTTTGAA+GGG | - | chr4.2:85292882-85292901 | MS.gene49847:intron | 20.0% |
| !!! | TACAACACTTATTTTTGTAT+TGG | + | chr4.2:85292048-85292067 | None:intergenic | 20.0% |
| !!! | TAGTTATCTAGAATATCAAT+AGG | - | chr4.2:85291986-85292005 | MS.gene49847:intron | 20.0% |
| !!! | TCAATAGGTCTTATTAAATT+TGG | - | chr4.2:85292001-85292020 | MS.gene49847:intron | 20.0% |
| !!! | TTGTTTTTTATTGACCAATT+CGG | - | chr4.2:85292551-85292570 | MS.gene49847:intron | 20.0% |
| ! | AAAAAGTGGTTATGAATCAT+TGG | - | chr4.2:85293172-85293191 | MS.gene49847:intron | 25.0% |
| ! | AATAATTAACCGATGAGTTT+AGG | - | chr4.2:85290876-85290895 | MS.gene49847:intron | 25.0% |
| ! | AATGTTATATATAAGGACCA+AGG | + | chr4.2:85290761-85290780 | None:intergenic | 25.0% |
| ! | ACTGAAAGAGAACAAAAAAA+CGG | + | chr4.2:85291390-85291409 | None:intergenic | 25.0% |
| ! | AGAGAAATTAATCACTCAAT+TGG | + | chr4.2:85291354-85291373 | None:intergenic | 25.0% |
| ! | ATAAAAGTCACGAAAAATGA+AGG | + | chr4.2:85292749-85292768 | None:intergenic | 25.0% |
| ! | ATAAATGTAACTTAGTTGGT+CGG | - | chr4.2:85292209-85292228 | MS.gene49847:intron | 25.0% |
| ! | ATTGAAATGTATACCTAAAG+TGG | + | chr4.2:85293455-85293474 | None:intergenic | 25.0% |
| ! | CAATCCAAGAATTACTATAT+TGG | - | chr4.2:85290626-85290645 | MS.gene49847:CDS | 25.0% |
| ! | CGACTATTCTAAATATGAAT+TGG | - | chr4.2:85290513-85290532 | MS.gene49847:intron | 25.0% |
| ! | CTTCATTTATTTACTACAAG+AGG | - | chr4.2:85292272-85292291 | MS.gene49847:intron | 25.0% |
| ! | TAAAAGTCACGAAAAATGAA+GGG | + | chr4.2:85292748-85292767 | None:intergenic | 25.0% |
| ! | TAAATATGAATTGGGTTCAT+GGG | - | chr4.2:85290522-85290541 | MS.gene49847:intron | 25.0% |
| ! | TACAACACTTATGTTTGTAT+TGG | + | chr4.2:85291013-85291032 | None:intergenic | 25.0% |
| ! | TATTTAGAAGATTCCATGAA+AGG | + | chr4.2:85291603-85291622 | None:intergenic | 25.0% |
| ! | TGATTAATTTCTCTATTCCA+TGG | - | chr4.2:85291360-85291379 | MS.gene49847:intron | 25.0% |
| ! | TTATAGTGTTGTAAATAGTG+TGG | - | chr4.2:85291125-85291144 | MS.gene49847:intron | 25.0% |
| ! | TTCCATAAATGTAACTTAGT+TGG | - | chr4.2:85292205-85292224 | MS.gene49847:intron | 25.0% |
| ! | TTTAGAAAACCTAAACTCAT+CGG | + | chr4.2:85290888-85290907 | None:intergenic | 25.0% |
| !! | ACTTATTATGCTTCTTTTGA+AGG | - | chr4.2:85291544-85291563 | MS.gene49847:intron | 25.0% |
| !! | ATTAACAAAGGCTTTTCATT+AGG | - | chr4.2:85293210-85293229 | MS.gene49847:intron | 25.0% |
| !! | GCTTATTATGTTTCTTTTGA+AGG | - | chr4.2:85292881-85292900 | MS.gene49847:intron | 25.0% |
| !! | TTTTCCAAGACTTAAAAAGT+TGG | - | chr4.2:85291567-85291586 | MS.gene49847:intron | 25.0% |
| !!! | ATAGGTCTTATTAAATTTGG+TGG | - | chr4.2:85292004-85292023 | MS.gene49847:intron | 25.0% |
| !!! | GAAGTTTGGTTCTATTTTTA+TGG | - | chr4.2:85293006-85293025 | MS.gene49847:intron | 25.0% |
| !!! | TAGGTCTTATTAAATTTGGT+GGG | - | chr4.2:85292005-85292024 | MS.gene49847:intron | 25.0% |
| !!! | TTTTTTTTAAAGAGGTTCAC+CGG | - | chr4.2:85292403-85292422 | MS.gene49847:CDS | 25.0% |
| AAAAGTCACGAAAAATGAAG+GGG | + | chr4.2:85292747-85292766 | None:intergenic | 30.0% | |
| AACATCATATCAAGTTTGCA+TGG | - | chr4.2:85293373-85293392 | MS.gene49847:CDS | 30.0% | |
| AATTAAGAGAGATGTCAGAT+GGG | - | chr4.2:85290951-85290970 | MS.gene49847:intron | 30.0% | |
| ATGCAAAATCAAAGATGTAG+CGG | - | chr4.2:85290430-85290449 | MS.gene49847:CDS | 30.0% | |
| CTAAATATGAATTGGGTTCA+TGG | - | chr4.2:85290521-85290540 | MS.gene49847:intron | 30.0% | |
| GACCAACTAAGTTACATTTA+TGG | + | chr4.2:85292210-85292229 | None:intergenic | 30.0% | |
| GAGATTGTGTAGAAAGTAAA+CGG | - | chr4.2:85292814-85292833 | MS.gene49847:intron | 30.0% | |
| GATAATAACTTCTTCACTCA+AGG | - | chr4.2:85291691-85291710 | MS.gene49847:intron | 30.0% | |
| GTTTCCTAGACTTAAAAGAT+TGG | - | chr4.2:85292904-85292923 | MS.gene49847:intron | 30.0% | |
| TATCTATGTTGTTAAAACCG+AGG | + | chr4.2:85291675-85291694 | None:intergenic | 30.0% | |
| TATCTTAGAGACCAAATTGA+TGG | + | chr4.2:85291208-85291227 | None:intergenic | 30.0% | |
| TCTTAGACCTTTCAGAAAAT+GGG | - | chr4.2:85293341-85293360 | MS.gene49847:CDS | 30.0% | |
| TGTCTTTGTATCCATCAATT+TGG | - | chr4.2:85291194-85291213 | MS.gene49847:intron | 30.0% | |
| TTCAAATTCTCCAAATCAAC+CGG | + | chr4.2:85292425-85292444 | None:intergenic | 30.0% | |
| TTCATTAGGAGGAAAGAAAT+CGG | - | chr4.2:85293224-85293243 | MS.gene49847:intron | 30.0% | |
| ! | AGCATTTTGCCAAGTTTAAA+TGG | - | chr4.2:85292962-85292981 | MS.gene49847:intron | 30.0% |
| ! | AGTTAGTTTCAAAGAAACAG+AGG | + | chr4.2:85291527-85291546 | None:intergenic | 30.0% |
| ! | TTAACGAGGCCTTTTATAAA+GGG | - | chr4.2:85292166-85292185 | MS.gene49847:intron | 30.0% |
| ! | TTTAACGAGGCCTTTTATAA+AGG | - | chr4.2:85292165-85292184 | MS.gene49847:intron | 30.0% |
| !! | CAAGAGAGATAATTTTAACG+AGG | - | chr4.2:85292152-85292171 | MS.gene49847:intron | 30.0% |
| !! | CAAGAGAGATATTTTTACTG+AGG | - | chr4.2:85291097-85291116 | MS.gene49847:intron | 30.0% |
| !! | GTCAAGTTTGAATGGATTAA+CGG | - | chr4.2:85291633-85291652 | MS.gene49847:intron | 30.0% |
| !!! | ATCGAGCTCTGTATTTTTTT+AGG | - | chr4.2:85291328-85291347 | MS.gene49847:intron | 30.0% |
| AACAAAAAAACGGTGAACCA+TGG | + | chr4.2:85291380-85291399 | None:intergenic | 35.0% | |
| AATTGTTCTCTCTCCACTTT+AGG | - | chr4.2:85293439-85293458 | MS.gene49847:CDS | 35.0% | |
| ACATTGCAGTATGTTAGGTT+CGG | - | chr4.2:85292233-85292252 | MS.gene49847:intron | 35.0% | |
| AGCATCTTGTCAAGTTTGAA+TGG | - | chr4.2:85291625-85291644 | MS.gene49847:intron | 35.0% | |
| AGTGGTTATGAATCATTGGT+AGG | - | chr4.2:85293176-85293195 | MS.gene49847:intron | 35.0% | |
| ATTTAGCTGGCTAGAACTAT+TGG | - | chr4.2:85293558-85293577 | MS.gene49847:CDS | 35.0% | |
| ATTTGGCAAAATCTGTTGCA+AGG | + | chr4.2:85293540-85293559 | None:intergenic | 35.0% | |
| CAATTAAGAGAGATGTCAGA+TGG | - | chr4.2:85290950-85290969 | MS.gene49847:intron | 35.0% | |
| GACTATCTTAAAGACCGAAT+TGG | + | chr4.2:85292568-85292587 | None:intergenic | 35.0% | |
| GCAGTCAATCCATTTAAACT+TGG | + | chr4.2:85292974-85292993 | None:intergenic | 35.0% | |
| GGGTCCAATATAGTAATTCT+TGG | + | chr4.2:85290633-85290652 | None:intergenic | 35.0% | |
| GTCTTAGACCTTTCAGAAAA+TGG | - | chr4.2:85293340-85293359 | MS.gene49847:CDS | 35.0% | |
| TGGAGACATTAGATCTTTCA+GGG | - | chr4.2:85292924-85292943 | MS.gene49847:intron | 35.0% | |
| TTGGAGACATTAGATCTTTC+AGG | - | chr4.2:85292923-85292942 | MS.gene49847:intron | 35.0% | |
| TTGTCCTACAACAGAATTCA+AGG | - | chr4.2:85290712-85290731 | MS.gene49847:intron | 35.0% | |
| ! | AACAAAGGCTTTTCATTAGG+AGG | - | chr4.2:85293213-85293232 | MS.gene49847:intron | 35.0% |
| ! | AGTTTAGCCCATTTTCTGAA+AGG | + | chr4.2:85293351-85293370 | None:intergenic | 35.0% |
| ! | CAGATTTTGCCAAATTTAGC+TGG | - | chr4.2:85293545-85293564 | MS.gene49847:CDS | 35.0% |
| ! | GAGATAGCAATTGTTGTTCT+TGG | - | chr4.2:85290554-85290573 | MS.gene49847:CDS | 35.0% |
| !! | ATTTCTGAGATCAAAGGAGT+TGG | - | chr4.2:85293315-85293334 | MS.gene49847:CDS | 35.0% |
| !! | GCTCTAACAACTTTGAAGTT+TGG | - | chr4.2:85292992-85293011 | MS.gene49847:intron | 35.0% |
| !! | GTCTCCAATCTTTTAAGTCT+AGG | + | chr4.2:85292911-85292930 | None:intergenic | 35.0% |
| !! | TAGTTCTAGCCAGCTAAATT+TGG | + | chr4.2:85293557-85293576 | None:intergenic | 35.0% |
| !! | TCAAGGATTTCTGAGATCAA+AGG | - | chr4.2:85293309-85293328 | MS.gene49847:CDS | 35.0% |
| !!! | GTCTCCAACTTTTTAAGTCT+TGG | + | chr4.2:85291574-85291593 | None:intergenic | 35.0% |
| AACAGAATTCAAGGCTGGAT+TGG | - | chr4.2:85290721-85290740 | MS.gene49847:intron | 40.0% | |
| ATGGAAAACTTCTCAGCTCA+AGG | - | chr4.2:85293025-85293044 | MS.gene49847:intron | 40.0% | |
| CTAGAACTATTGGACTTGAG+TGG | - | chr4.2:85293568-85293587 | MS.gene49847:CDS | 40.0% | |
| GCTCTAACAACTTTGAACCT+CGG | - | chr4.2:85291655-85291674 | MS.gene49847:intron | 40.0% | |
| GCTTAGAGAAGGAGAGAATA+GGG | - | chr4.2:85290455-85290474 | MS.gene49847:intron | 40.0% | |
| TCGGAACATTGCAGTATGTT+AGG | - | chr4.2:85292228-85292247 | MS.gene49847:intron | 40.0% | |
| TGCATGGATTCACAGCATTA+AGG | - | chr4.2:85293389-85293408 | MS.gene49847:CDS | 40.0% | |
| TGCTTAGAGAAGGAGAGAAT+AGG | - | chr4.2:85290454-85290473 | MS.gene49847:intron | 40.0% | |
| TGGAGACATTAGACCTTTCA+TGG | - | chr4.2:85291587-85291606 | MS.gene49847:intron | 40.0% | |
| TGTTTCACTATTCCGTCCAT+TGG | - | chr4.2:85290669-85290688 | MS.gene49847:intron | 40.0% | |
| TTGAGTGGTAATCATCGTAC+TGG | - | chr4.2:85293583-85293602 | MS.gene49847:CDS | 40.0% | |
| AAGTGCTCTAGCATCTCTTC+TGG | - | chr4.2:85290586-85290605 | MS.gene49847:CDS | 45.0% | |
| ATGTAGCGGTTGCTTAGAGA+AGG | - | chr4.2:85290444-85290463 | MS.gene49847:intron | 45.0% | |
| CCAGCCTTGAATTCTGTTGT+AGG | + | chr4.2:85290719-85290738 | None:intergenic | 45.0% | |
| CCTACAACAGAATTCAAGGC+TGG | - | chr4.2:85290716-85290735 | MS.gene49847:intron | 45.0% | |
| TTCTGTTGTAGGACAAGTCG+AGG | + | chr4.2:85290708-85290727 | None:intergenic | 45.0% | |
| ! | AAGAGGTTCACCGGTTGATT+TGG | - | chr4.2:85292412-85292431 | MS.gene49847:CDS | 45.0% |
| ! | TCTGAGATCAAAGGAGTTGG+AGG | - | chr4.2:85293318-85293337 | MS.gene49847:CDS | 45.0% |
| !! | TTAAAAATTAATATTTACTT+GGG | + | chr4.2:85293125-85293144 | None:intergenic | 5.0% |
| !!! | TTTATAAATTCTTTAATTTT+AGG | - | chr4.2:85291305-85291324 | MS.gene49847:intron | 5.0% |
| GAAGGAGAGAATAGGGCTGT+TGG | - | chr4.2:85290462-85290481 | MS.gene49847:intron | 50.0% | |
| TCCGTCCATTGGAAGAGCTA+CGG | - | chr4.2:85290680-85290699 | MS.gene49847:intron | 50.0% | |
| !! | TGGCAACGAAGGTACTACCT+TGG | - | chr4.2:85290741-85290760 | MS.gene49847:intron | 50.0% |
| AGGAGCCGTAGCTCTTCCAA+TGG | + | chr4.2:85290688-85290707 | None:intergenic | 55.0% | |
| GCCGTAGCTCTTCCAATGGA+CGG | + | chr4.2:85290684-85290703 | None:intergenic | 55.0% | |
| !! | CAAGGCTGGATTGGCAACGA+AGG | - | chr4.2:85290730-85290749 | MS.gene49847:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 85290376 | 85293622 | 85290376 | ID=MS.gene49847 |
| chr4.2 | mRNA | 85290376 | 85293622 | 85290376 | ID=MS.gene49847.t1;Parent=MS.gene49847 |
| chr4.2 | exon | 85293247 | 85293622 | 85293247 | ID=MS.gene49847.t1.exon1;Parent=MS.gene49847.t1 |
| chr4.2 | CDS | 85293247 | 85293622 | 85293247 | ID=cds.MS.gene49847.t1;Parent=MS.gene49847.t1 |
| chr4.2 | exon | 85292286 | 85292432 | 85292286 | ID=MS.gene49847.t1.exon2;Parent=MS.gene49847.t1 |
| chr4.2 | CDS | 85292286 | 85292432 | 85292286 | ID=cds.MS.gene49847.t1;Parent=MS.gene49847.t1 |
| chr4.2 | exon | 85290952 | 85291095 | 85290952 | ID=MS.gene49847.t1.exon3;Parent=MS.gene49847.t1 |
| chr4.2 | CDS | 85290952 | 85291095 | 85290952 | ID=cds.MS.gene49847.t1;Parent=MS.gene49847.t1 |
| chr4.2 | exon | 85290538 | 85290684 | 85290538 | ID=MS.gene49847.t1.exon4;Parent=MS.gene49847.t1 |
| chr4.2 | CDS | 85290538 | 85290684 | 85290538 | ID=cds.MS.gene49847.t1;Parent=MS.gene49847.t1 |
| chr4.2 | exon | 85290376 | 85290450 | 85290376 | ID=MS.gene49847.t1.exon5;Parent=MS.gene49847.t1 |
| chr4.2 | CDS | 85290376 | 85290450 | 85290376 | ID=cds.MS.gene49847.t1;Parent=MS.gene49847.t1 |
| Gene Sequence |
| Protein sequence |
