AlfalfaGEDB | MS.gene051544

M. sativa cultivar XinJiangDaYe / MS.gene051544

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051544.t1	XP_003588914.1	98.8	162	2	0	1	162	1	162	1.50E-87	332

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051544.t1	Q8VWQ5	77.8	72	16	0	89	160	100	171	1.6e-29	130.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051544.t1	G7I8Z5	98.8	162	2	0	1	162	1	162	1.1e-87	332.0

TFs/TRs:

Gene ID	Type	Classification
MS.gene051544.t1	TF	WRKY

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049993	MS.gene051544	0.809725	1.64E-50	-1.69E-46
MS.gene051544	MS.gene052902	0.813529	2.44E-51	-1.69E-46
MS.gene051544	MS.gene053356	0.827634	1.40E-54	-1.69E-46
MS.gene051544	MS.gene054093	0.817642	2.97E-52	-1.69E-46
MS.gene051544	MS.gene054788	0.813966	1.96E-51	-1.69E-46
MS.gene051544	MS.gene058426	0.886648	2.85E-72	-1.69E-46
MS.gene051544	MS.gene059820	0.821985	3.02E-53	-1.69E-46
MS.gene051544	MS.gene063647	0.811587	6.50E-51	-1.69E-46
MS.gene051544	MS.gene069639	0.817326	3.50E-52	-1.69E-46
MS.gene051544	MS.gene071463	0.809549	1.79E-50	-1.69E-46
MS.gene051544	MS.gene21325	0.812211	4.75E-51	-1.69E-46
MS.gene051544	MS.gene23193	0.828928	6.85E-55	-1.69E-46
MS.gene051544	MS.gene41476	0.840312	9.38E-58	-1.69E-46
MS.gene051544	MS.gene46126	0.807203	5.67E-50	-1.69E-46
MS.gene051544	MS.gene48561	0.828589	8.26E-55	-1.69E-46
MS.gene051544	MS.gene49603	0.831087	2.04E-55	-1.69E-46
MS.gene051544	MS.gene49847	0.809541	1.80E-50	-1.69E-46
MS.gene051544	MS.gene52596	0.807862	4.11E-50	-1.69E-46
MS.gene051544	MS.gene53831	0.834903	2.29E-56	-1.69E-46
MS.gene051544	MS.gene53832	0.809936	1.48E-50	-1.69E-46
MS.gene051544	MS.gene53839	0.817734	2.83E-52	-1.69E-46
MS.gene051544	MS.gene54314	0.854866	9.25E-62	-1.69E-46
MS.gene051544	MS.gene54316	0.849468	3.17E-60	-1.69E-46
MS.gene051544	MS.gene56535	0.812084	5.07E-51	-1.69E-46
MS.gene051544	MS.gene59129	0.828568	8.36E-55	-1.69E-46
MS.gene051544	MS.gene62931	0.808228	3.43E-50	-1.69E-46
MS.gene051544	MS.gene64443	0.813282	2.77E-51	-1.69E-46
MS.gene051544	MS.gene65036	0.833155	6.27E-56	-1.69E-46
MS.gene051544	MS.gene65458	0.821875	3.20E-53	-1.69E-46
MS.gene051544	MS.gene70072	0.80439	2.21E-49	-1.69E-46
MS.gene051544	MS.gene70077	0.825419	4.74E-54	-1.69E-46
MS.gene051544	MS.gene71493	0.869672	2.60E-66	-1.69E-46
MS.gene051544	MS.gene71495	0.83234	1.00E-55	-1.69E-46
MS.gene051544	MS.gene71820	0.809653	1.70E-50	-1.69E-46
MS.gene051544	MS.gene79644	0.821552	3.80E-53	-1.69E-46
MS.gene051544	MS.gene80082	0.805766	1.14E-49	-1.69E-46
MS.gene051544	MS.gene80682	0.807101	5.96E-50	-1.69E-46
MS.gene051544	MS.gene80983	0.801556	8.51E-49	-1.69E-46
MS.gene051544	MS.gene83740	0.804669	1.93E-49	-1.69E-46
MS.gene051544	MS.gene83828	0.807509	4.88E-50	-1.69E-46
MS.gene051544	MS.gene83829	0.812886	3.38E-51	-1.69E-46
MS.gene051544	MS.gene87693	0.810163	1.32E-50	-1.69E-46
MS.gene051544	MS.gene88413	0.823906	1.08E-53	-1.69E-46
MS.gene051544	MS.gene89337	0.808248	3.40E-50	-1.69E-46
MS.gene051544	MS.gene90595	0.82259	2.18E-53	-1.69E-46
MS.gene051544	MS.gene91428	0.813085	3.06E-51	-1.69E-46
MS.gene051544	MS.gene92169	0.810107	1.36E-50	-1.69E-46
MS.gene051544	MS.gene92171	0.81326	2.80E-51	-1.69E-46
MS.gene051544	MS.gene92755	0.820799	5.67E-53	-1.69E-46
MS.gene051544	MS.gene93819	0.81576	7.84E-52	-1.69E-46
MS.gene051544	MS.gene93869	0.814286	1.66E-51	-1.69E-46
MS.gene051544	MS.gene97211	0.807218	5.63E-50	-1.69E-46
MS.gene051544	MS.gene98804	0.805757	1.14E-49	-1.69E-46
MS.gene051544	MS.gene99345	0.804541	2.06E-49	-1.69E-46
MS.gene051544	MS.gene99638	0.82767	1.38E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051544.t1	MTR_1g015140	98.765	162	2	0	1	162	1	162	3.60e-120	335
MS.gene051544.t1	MTR_3g104750	58.621	174	48	6	1	161	1	163	1.49e-55	172
MS.gene051544.t1	MTR_8g092010	50.714	140	59	3	25	158	29	164	2.54e-37	126
MS.gene051544.t1	MTR_3g095040	44.706	170	80	3	5	162	11	178	1.11e-36	125
MS.gene051544.t1	MTR_2g033820	68.421	76	24	0	85	160	186	261	2.14e-31	116
MS.gene051544.t1	MTR_1g086790	57.609	92	39	0	69	160	125	216	3.80e-31	114
MS.gene051544.t1	MTR_7g109800	62.025	79	30	0	81	159	124	202	4.17e-29	108
MS.gene051544.t1	MTR_8g096730	45.098	102	56	0	58	159	26	127	5.16e-29	104
MS.gene051544.t1	MTR_7g028415	63.768	69	25	0	91	159	82	150	7.72e-29	104
MS.gene051544.t1	MTR_7g028710	63.768	69	25	0	91	159	82	150	7.72e-29	104
MS.gene051544.t1	MTR_4g094588	66.197	71	24	0	89	159	165	235	2.88e-28	107
MS.gene051544.t1	MTR_7g079010	63.380	71	26	0	89	159	128	198	4.74e-28	103
MS.gene051544.t1	MTR_4g122530	66.667	72	24	0	89	160	195	266	7.73e-28	107
MS.gene051544.t1	MTR_5g094430	60.526	76	29	1	84	158	211	286	1.96e-27	105
MS.gene051544.t1	MTR_5g094430	50.000	58	28	1	102	159	66	122	9.32e-12	62.4
MS.gene051544.t1	MTR_3g031220	63.158	76	27	1	84	158	346	421	2.24e-27	106
MS.gene051544.t1	MTR_3g031220	47.222	72	33	2	92	159	184	254	4.44e-16	74.7
MS.gene051544.t1	MTR_5g094430	60.526	76	29	1	84	158	233	308	2.40e-27	106
MS.gene051544.t1	MTR_5g094430	50.000	58	28	1	102	159	88	144	8.24e-12	62.4
MS.gene051544.t1	MTR_5g094430	60.526	76	29	1	84	158	345	420	2.97e-27	106
MS.gene051544.t1	MTR_5g094430	50.000	58	28	1	102	159	200	256	8.43e-12	62.4
MS.gene051544.t1	MTR_5g091390	67.143	70	23	0	89	158	144	213	3.88e-27	103
MS.gene051544.t1	MTR_4g013260	61.842	76	28	1	84	158	317	392	5.02e-27	105
MS.gene051544.t1	MTR_4g013260	51.724	58	28	0	102	159	184	241	2.45e-15	72.8
MS.gene051544.t1	MTR_5g043880	61.842	76	29	0	83	158	105	180	6.38e-27	102
MS.gene051544.t1	MTR_3g056100	59.211	76	30	1	84	158	383	458	7.21e-27	105
MS.gene051544.t1	MTR_3g056100	50.000	58	28	1	102	159	243	299	1.62e-12	64.7
MS.gene051544.t1	MTR_3g056100	59.211	76	30	1	84	158	396	471	7.85e-27	105
MS.gene051544.t1	MTR_3g056100	50.000	58	28	1	102	159	243	299	1.58e-12	64.7
MS.gene051544.t1	MTR_3g056100	59.211	76	30	1	84	158	239	314	8.19e-27	104
MS.gene051544.t1	MTR_3g056100	50.000	58	28	1	102	159	99	155	2.11e-12	64.3
MS.gene051544.t1	MTR_3g056100	59.211	76	30	1	84	158	252	327	9.26e-27	104
MS.gene051544.t1	MTR_3g056100	50.000	58	28	1	102	159	99	155	2.09e-12	64.3
MS.gene051544.t1	MTR_3g095080	60.274	73	29	0	89	161	131	203	2.48e-26	99.8
MS.gene051544.t1	MTR_3g095080	60.274	73	29	0	89	161	155	227	2.84e-26	100
MS.gene051544.t1	MTR_5g097490	53.333	90	40	1	69	158	221	308	4.61e-26	102
MS.gene051544.t1	MTR_8g007270	57.143	77	32	1	83	158	134	210	6.12e-26	99.0
MS.gene051544.t1	MTR_5g074400	60.526	76	29	1	84	158	401	476	7.16e-26	102
MS.gene051544.t1	MTR_5g074400	55.172	58	25	1	102	159	243	299	5.47e-15	71.6
MS.gene051544.t1	MTR_3g009470	57.895	76	31	1	84	158	476	551	1.17e-25	102
MS.gene051544.t1	MTR_3g009470	51.724	58	27	1	102	159	280	336	3.08e-14	69.7
MS.gene051544.t1	MTR_7g080020	57.895	76	31	1	84	158	474	549	1.45e-25	102
MS.gene051544.t1	MTR_7g080020	43.038	79	38	2	80	158	264	335	1.49e-12	64.7
MS.gene051544.t1	MTR_8g092140	60.811	74	28	1	89	161	146	219	1.76e-25	97.8
MS.gene051544.t1	MTR_7g080000	58.571	70	29	0	89	158	419	488	4.00e-25	100
MS.gene051544.t1	MTR_7g080000	43.038	79	38	2	80	158	218	289	1.87e-12	64.3
MS.gene051544.t1	MTR_7g071120	59.211	76	30	1	84	158	305	380	1.06e-24	99.4
MS.gene051544.t1	MTR_7g071120	53.448	58	26	1	102	159	166	222	1.32e-14	70.5
MS.gene051544.t1	MTR_7g011820	54.545	77	34	1	83	158	390	466	1.50e-24	99.0
MS.gene051544.t1	MTR_7g011820	54.386	57	25	1	102	158	228	283	9.57e-14	68.2
MS.gene051544.t1	MTR_5g042920	55.714	70	31	0	89	158	307	376	5.93e-24	96.7
MS.gene051544.t1	MTR_5g042920	54.386	57	25	1	102	158	151	206	2.43e-13	67.0
MS.gene051544.t1	MTR_4g132430	52.703	74	34	1	87	159	112	185	1.24e-23	95.1
MS.gene051544.t1	MTR_4g132430	52.703	74	34	1	87	159	246	319	4.14e-23	94.7
MS.gene051544.t1	MTR_4g082580	45.556	90	49	0	69	158	245	334	6.84e-23	93.6
MS.gene051544.t1	MTR_4g082580	50.877	57	28	0	102	158	145	201	1.27e-13	67.4
MS.gene051544.t1	MTR_4g130900	52.632	76	36	0	83	158	340	415	2.97e-22	92.4
MS.gene051544.t1	MTR_7g110720	51.351	74	35	1	87	159	174	247	3.15e-22	91.7
MS.gene051544.t1	MTR_7g110720	51.351	74	35	1	87	159	201	274	3.72e-22	91.7
MS.gene051544.t1	MTR_2g023930	50.000	74	36	1	87	159	290	363	4.63e-22	92.0
MS.gene051544.t1	MTR_7g062220	64.912	57	20	0	102	158	124	180	6.77e-22	89.7
MS.gene051544.t1	MTR_4g049760	43.000	100	56	1	61	159	249	348	1.72e-21	90.5
MS.gene051544.t1	MTR_4g094412	51.351	74	35	1	87	159	219	292	3.05e-21	89.4
MS.gene051544.t1	MTR_4g094412	51.351	74	35	1	87	159	228	301	3.10e-21	89.4
MS.gene051544.t1	MTR_2g088000	50.685	73	35	1	87	158	334	406	4.21e-21	89.4
MS.gene051544.t1	MTR_1g078260	50.667	75	36	1	85	158	230	304	1.56e-20	87.4
MS.gene051544.t1	MTR_3g053330	49.315	73	36	1	87	158	236	308	2.78e-20	86.7
MS.gene051544.t1	MTR_7g009730	51.389	72	34	1	89	159	206	277	3.46e-20	86.7
MS.gene051544.t1	MTR_1g077780	50.000	70	35	0	89	158	49	118	2.19e-19	79.7
MS.gene051544.t1	MTR_2g105060	51.351	74	33	2	89	159	79	152	2.29e-19	82.0
MS.gene051544.t1	MTR_2g105060	51.351	74	33	2	89	159	154	227	3.79e-19	82.4
MS.gene051544.t1	MTR_5g016610	50.704	71	34	1	89	158	186	256	4.46e-19	81.6
MS.gene051544.t1	MTR_4g094908	50.704	71	34	1	89	158	253	323	4.98e-19	82.4
MS.gene051544.t1	MTR_4g107970	49.315	73	36	1	87	158	163	235	5.34e-19	83.2
MS.gene051544.t1	MTR_4g107970	49.315	73	36	1	87	158	240	312	6.30e-19	83.2
MS.gene051544.t1	MTR_7g100510	47.945	73	38	0	86	158	345	417	9.60e-19	82.4
MS.gene051544.t1	MTR_7g100510	53.571	56	25	1	103	158	190	244	3.80e-13	66.2
MS.gene051544.t1	MTR_3g106060	52.542	59	27	1	101	158	137	195	1.68e-18	80.5
MS.gene051544.t1	MTR_4g049790	42.000	100	57	1	61	159	271	370	1.70e-18	81.6
MS.gene051544.t1	MTR_4g007060	52.459	61	28	1	100	159	126	186	1.78e-18	80.1
MS.gene051544.t1	MTR_1g009613	50.704	71	34	1	89	158	249	319	2.35e-18	80.5
MS.gene051544.t1	MTR_4g007060	52.459	61	28	1	100	159	160	220	2.37e-18	80.5
MS.gene051544.t1	MTR_2g045360	49.315	73	36	1	87	158	196	268	3.41e-18	80.5
MS.gene051544.t1	MTR_6g086555	47.297	74	38	1	86	158	190	263	1.79e-17	78.6
MS.gene051544.t1	MTR_0117s0040	40.659	91	52	2	71	160	44	133	7.27e-17	75.5
MS.gene051544.t1	MTR_1g013760	50.877	57	27	1	103	158	141	197	9.06e-17	75.5
MS.gene051544.t1	MTR_4g127040	46.479	71	37	1	89	158	232	302	9.94e-17	75.9
MS.gene051544.t1	MTR_1g013790	48.333	60	30	1	100	158	99	158	1.04e-16	75.1
MS.gene051544.t1	MTR_7g109600	55.172	58	25	1	103	159	54	111	1.96e-16	74.3
MS.gene051544.t1	MTR_1g070455	45.570	79	40	2	83	158	272	350	2.46e-16	75.1
MS.gene051544.t1	MTR_3g031220	47.222	72	33	2	92	159	184	254	2.69e-16	75.1
MS.gene051544.t1	MTR_5g097500	47.826	69	36	0	90	158	218	286	2.90e-16	74.7
MS.gene051544.t1	MTR_3g108960	44.156	77	40	2	83	158	297	371	4.62e-16	74.7
MS.gene051544.t1	MTR_8g028565	54.237	59	26	1	103	160	156	214	9.86e-16	73.2
MS.gene051544.t1	MTR_8g092010	40.000	110	56	3	25	128	29	134	1.64e-15	69.3
MS.gene051544.t1	MTR_8g087000	52.632	57	26	1	103	158	78	134	1.30e-14	69.3
MS.gene051544.t1	MTR_8g087000	52.632	57	26	1	103	158	77	133	1.34e-14	69.3
MS.gene051544.t1	MTR_3g009470	51.724	58	27	1	102	159	280	336	2.43e-14	69.7
MS.gene051544.t1	MTR_8g098945	50.000	60	29	1	101	159	128	187	4.78e-14	68.2
MS.gene051544.t1	MTR_1g099600	52.632	57	26	1	103	158	186	242	5.95e-14	68.2
MS.gene051544.t1	MTR_7g079040	50.847	59	28	1	103	160	155	213	8.94e-14	67.8
MS.gene051544.t1	MTR_2g032030	34.862	109	66	3	56	159	217	325	1.13e-13	67.8
MS.gene051544.t1	MTR_2g032030	34.862	109	66	3	56	159	217	325	1.22e-13	67.8
MS.gene051544.t1	MTR_2g024380	47.541	61	31	1	99	158	248	308	1.97e-13	67.0
MS.gene051544.t1	MTR_2g016770	49.123	57	28	1	103	158	36	92	2.09e-13	65.5
MS.gene051544.t1	MTR_2g083870	50.877	57	27	1	103	158	81	137	2.53e-13	65.9
MS.gene051544.t1	MTR_2g016770	49.123	57	28	1	103	158	28	84	2.79e-13	65.1
MS.gene051544.t1	MTR_2g024350	45.902	61	32	1	99	158	5	65	3.46e-13	65.1
MS.gene051544.t1	MTR_3g090860	48.333	60	28	1	101	157	132	191	7.42e-13	65.1
MS.gene051544.t1	MTR_4g047580	42.647	68	38	1	87	153	266	333	2.79e-12	63.9
MS.gene051544.t1	MTR_8g032510	40.000	90	42	2	80	157	88	177	1.75e-11	61.2
MS.gene051544.t1	MTR_5g074200	49.123	57	28	1	102	158	220	275	1.97e-11	61.2
MS.gene051544.t1	MTR_7g073430	31.200	125	70	3	38	157	67	180	4.12e-11	60.1
MS.gene051544.t1	MTR_8g067635	45.902	61	32	1	99	158	346	406	5.40e-11	60.1
MS.gene051544.t1	MTR_8g067650	46.667	60	31	1	100	158	337	396	5.96e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051544.t1	AT5G26170	51.049	143	52	4	36	160	29	171	8.33e-40	132
MS.gene051544.t1	AT5G64810	43.871	155	75	4	18	160	14	168	8.53e-37	125
MS.gene051544.t1	AT5G49520	71.831	71	20	0	89	159	208	278	1.78e-30	114
MS.gene051544.t1	AT2G47260	63.750	80	29	0	81	160	153	232	8.73e-30	111
MS.gene051544.t1	AT1G29860	70.423	71	21	0	89	159	123	193	1.92e-29	109
MS.gene051544.t1	AT4G18170	63.636	77	28	0	83	159	153	229	3.16e-29	109
MS.gene051544.t1	AT5G13080	61.111	72	28	0	88	159	53	124	4.87e-29	104
MS.gene051544.t1	AT3G01970	62.857	70	26	0	89	158	52	121	8.65e-29	103
MS.gene051544.t1	AT1G69310	63.158	76	28	0	83	158	128	203	1.10e-27	104
MS.gene051544.t1	AT1G69310	63.158	76	28	0	83	158	128	203	1.10e-27	104
MS.gene051544.t1	AT1G69310	63.158	76	28	0	83	158	128	203	1.10e-27	104
MS.gene051544.t1	AT4G26640	59.211	76	30	1	84	158	186	261	1.28e-27	106
MS.gene051544.t1	AT4G26640	50.000	60	29	1	100	159	33	91	1.54e-12	64.7
MS.gene051544.t1	AT4G26640	59.211	76	30	1	84	158	186	261	1.28e-27	106
MS.gene051544.t1	AT4G26640	50.000	60	29	1	100	159	33	91	1.54e-12	64.7
MS.gene051544.t1	AT4G26640	59.211	76	30	1	84	158	186	261	1.28e-27	106
MS.gene051544.t1	AT4G26640	50.000	60	29	1	100	159	33	91	1.54e-12	64.7
MS.gene051544.t1	AT4G26640	59.211	76	30	1	84	158	186	261	1.28e-27	106
MS.gene051544.t1	AT4G26640	50.000	60	29	1	100	159	33	91	1.54e-12	64.7
MS.gene051544.t1	AT2G38470	61.842	76	28	1	84	158	343	418	1.52e-27	107
MS.gene051544.t1	AT2G38470	51.724	58	27	1	102	159	184	240	2.21e-14	70.1
MS.gene051544.t1	AT4G26640	59.211	76	30	1	84	158	290	365	1.90e-27	107
MS.gene051544.t1	AT4G26640	50.000	60	29	1	100	159	137	195	1.31e-12	64.7
MS.gene051544.t1	AT4G26640	59.211	76	30	1	84	158	322	397	1.97e-27	107
MS.gene051544.t1	AT4G26640	50.000	60	29	1	100	159	169	227	1.33e-12	64.7
MS.gene051544.t1	AT4G26640	59.211	76	30	1	84	158	362	437	2.27e-27	107
MS.gene051544.t1	AT4G26640	50.000	60	29	1	100	159	209	267	1.16e-12	65.1
MS.gene051544.t1	AT5G07100	60.976	82	29	2	80	158	116	197	2.41e-27	102
MS.gene051544.t1	AT5G07100	48.276	58	30	0	102	159	24	81	3.10e-13	65.1
MS.gene051544.t1	AT5G07100	60.976	82	29	2	80	158	116	197	2.41e-27	102
MS.gene051544.t1	AT5G07100	48.276	58	30	0	102	159	24	81	3.10e-13	65.1
MS.gene051544.t1	AT5G07100	60.976	82	29	2	80	158	116	197	2.41e-27	102
MS.gene051544.t1	AT5G07100	48.276	58	30	0	102	159	24	81	3.10e-13	65.1
MS.gene051544.t1	AT5G07100	60.976	82	29	2	80	158	116	197	2.41e-27	102
MS.gene051544.t1	AT5G07100	48.276	58	30	0	102	159	24	81	3.10e-13	65.1
MS.gene051544.t1	AT4G39410	48.039	102	53	0	60	161	181	282	2.59e-27	103
MS.gene051544.t1	AT3G62340	64.935	77	26	1	83	159	100	175	3.26e-27	103
MS.gene051544.t1	AT5G07100	60.976	82	29	2	80	158	209	290	4.98e-27	103
MS.gene051544.t1	AT5G07100	48.276	58	30	0	102	159	117	174	4.16e-13	65.9
MS.gene051544.t1	AT5G46350	63.380	71	26	0	89	159	170	240	7.10e-27	103
MS.gene051544.t1	AT2G04880	61.429	70	27	0	89	158	270	339	1.33e-26	104
MS.gene051544.t1	AT2G04880	45.902	61	32	1	99	159	108	167	1.37e-11	62.0
MS.gene051544.t1	AT2G44745	58.442	77	31	1	83	158	125	201	1.46e-26	100
MS.gene051544.t1	AT2G46130	59.740	77	31	0	83	159	11	87	1.48e-26	97.1
MS.gene051544.t1	AT2G04880	61.429	70	27	0	89	158	294	363	1.86e-26	103
MS.gene051544.t1	AT2G04880	45.902	61	32	1	99	159	108	167	1.42e-11	62.0
MS.gene051544.t1	AT1G64000	58.333	72	30	0	88	159	100	171	2.19e-26	99.4
MS.gene051544.t1	AT5G56270	57.895	76	31	1	84	158	468	543	7.44e-26	102
MS.gene051544.t1	AT5G56270	49.123	57	28	1	102	158	273	328	5.82e-12	63.2
MS.gene051544.t1	AT5G41570	54.217	83	31	1	84	159	73	155	1.79e-25	96.3
MS.gene051544.t1	AT4G26440	41.221	131	70	1	28	158	305	428	2.79e-25	101
MS.gene051544.t1	AT4G26440	49.123	57	28	1	102	158	178	233	2.41e-12	64.3
MS.gene051544.t1	AT2G21900	58.904	73	27	1	91	160	95	167	8.66e-25	95.1
MS.gene051544.t1	AT1G13960	55.714	70	31	0	89	158	243	312	2.37e-24	97.1
MS.gene051544.t1	AT1G13960	56.140	57	24	1	102	158	76	131	7.50e-15	70.9
MS.gene051544.t1	AT3G01080	50.000	84	41	1	76	158	317	400	2.75e-24	97.8
MS.gene051544.t1	AT3G01080	50.877	57	27	1	102	158	205	260	6.96e-13	65.5
MS.gene051544.t1	AT3G01080	50.000	84	41	1	76	158	279	362	2.99e-24	97.4
MS.gene051544.t1	AT3G01080	50.877	57	27	1	102	158	167	222	7.85e-13	65.5
MS.gene051544.t1	AT1G13960	55.714	70	31	0	89	158	396	465	3.42e-24	97.8
MS.gene051544.t1	AT1G13960	56.140	57	24	1	102	158	229	284	4.54e-15	72.0
MS.gene051544.t1	AT2G30250	57.895	76	31	1	84	158	309	384	1.35e-23	95.5
MS.gene051544.t1	AT2G30250	44.828	58	31	1	102	159	166	222	6.62e-11	59.7
MS.gene051544.t1	AT2G03340	54.286	70	32	0	89	158	402	471	6.00e-23	94.4
MS.gene051544.t1	AT2G03340	37.383	107	62	2	56	158	200	305	8.17e-15	71.2
MS.gene051544.t1	AT4G04450	46.316	95	39	2	77	159	162	256	9.79e-23	93.6
MS.gene051544.t1	AT1G69310	59.211	76	27	1	83	158	128	199	1.19e-22	91.3
MS.gene051544.t1	AT4G04450	46.316	95	39	2	77	159	256	350	2.63e-22	92.8
MS.gene051544.t1	AT4G22070	52.703	74	34	1	87	159	282	355	7.22e-22	91.3
MS.gene051544.t1	AT4G22070	52.703	74	34	1	87	159	282	355	7.22e-22	91.3
MS.gene051544.t1	AT4G22070	52.703	74	34	1	87	159	282	355	7.22e-22	91.3
MS.gene051544.t1	AT4G22070	52.703	74	34	1	87	159	282	355	7.22e-22	91.3
MS.gene051544.t1	AT1G62300	52.703	74	34	1	87	159	297	370	8.43e-22	91.3
MS.gene051544.t1	AT2G46130	55.844	77	30	1	83	159	11	83	1.56e-21	84.0
MS.gene051544.t1	AT5G15130	42.000	100	56	2	61	158	143	242	6.13e-21	88.6
MS.gene051544.t1	AT5G15130	42.000	100	56	2	61	158	185	284	6.62e-21	88.6
MS.gene051544.t1	AT4G30935	57.377	61	26	0	98	158	327	387	7.33e-21	88.6
MS.gene051544.t1	AT2G24570	43.137	102	55	2	60	158	199	300	1.02e-20	86.7
MS.gene051544.t1	AT1G68150	51.351	74	35	1	87	159	220	293	1.19e-20	87.4
MS.gene051544.t1	AT4G01720	50.000	74	36	1	87	159	224	297	2.54e-20	87.0
MS.gene051544.t1	AT2G23320	46.914	81	38	2	83	158	217	297	8.08e-20	84.3
MS.gene051544.t1	AT1G55600	46.512	86	44	1	75	160	282	365	1.04e-19	85.1
MS.gene051544.t1	AT1G18860	47.297	74	38	1	87	159	224	297	1.23e-19	85.1
MS.gene051544.t1	AT1G80840	39.815	108	60	3	55	159	99	204	2.43e-19	82.8
MS.gene051544.t1	AT5G43290	57.627	59	25	0	100	158	112	170	1.25e-18	80.5
MS.gene051544.t1	AT4G24240	45.783	83	42	2	79	158	256	338	2.64e-18	80.5
MS.gene051544.t1	AT4G31550	49.296	71	35	1	89	158	233	303	3.21e-18	80.1
MS.gene051544.t1	AT4G31550	49.296	71	35	1	89	158	232	302	3.32e-18	80.1
MS.gene051544.t1	AT4G31800	50.847	59	28	1	101	158	110	168	3.85e-18	78.6
MS.gene051544.t1	AT4G31800	50.847	59	28	1	101	158	175	233	6.09e-18	79.3
MS.gene051544.t1	AT2G25000	50.847	59	28	1	101	158	102	160	7.35e-18	77.8
MS.gene051544.t1	AT2G25000	50.847	59	28	1	101	158	102	160	7.35e-18	77.8
MS.gene051544.t1	AT3G04670	41.237	97	54	2	65	158	223	319	9.80e-18	79.0
MS.gene051544.t1	AT5G28650	41.237	97	54	2	65	158	223	319	1.34e-17	78.6
MS.gene051544.t1	AT2G25000	50.847	59	28	1	101	158	124	182	1.44e-17	77.4
MS.gene051544.t1	AT2G25000	50.847	59	28	1	101	158	145	203	1.68e-17	77.4
MS.gene051544.t1	AT2G30590	48.611	72	36	1	89	159	300	371	4.97e-17	77.4
MS.gene051544.t1	AT1G69810	41.053	95	54	2	67	159	110	204	2.17e-16	75.1
MS.gene051544.t1	AT1G69810	41.053	95	54	2	67	159	168	262	3.74e-16	74.7
MS.gene051544.t1	AT5G52830	58.621	58	23	1	103	159	166	223	3.93e-16	74.7
MS.gene051544.t1	AT2G37260	53.448	58	27	0	101	158	268	325	3.99e-16	74.3
MS.gene051544.t1	AT2G37260	53.571	56	25	1	103	158	86	140	2.71e-12	63.5
MS.gene051544.t1	AT2G37260	53.448	58	27	0	101	158	266	323	4.23e-16	74.3
MS.gene051544.t1	AT2G37260	53.571	56	25	1	103	158	84	138	3.03e-12	63.5
MS.gene051544.t1	AT2G37260	53.448	58	27	0	101	158	348	405	4.41e-16	74.7
MS.gene051544.t1	AT2G37260	53.571	56	25	1	103	158	166	220	2.49e-12	63.9
MS.gene051544.t1	AT1G29280	51.724	58	27	1	103	159	75	132	4.57e-16	73.6
MS.gene051544.t1	AT3G58710	53.448	58	26	1	103	159	72	129	1.88e-14	69.3
MS.gene051544.t1	AT3G58710	53.448	58	26	1	103	159	71	128	2.08e-14	68.9
MS.gene051544.t1	AT4G01250	50.847	59	28	1	103	160	129	187	2.19e-14	69.3
MS.gene051544.t1	AT2G34830	35.484	124	71	4	41	159	163	282	3.26e-14	69.3
MS.gene051544.t1	AT2G34830	35.484	124	71	4	41	159	154	273	3.29e-14	69.3
MS.gene051544.t1	AT1G30650	42.105	76	42	2	86	159	200	275	1.41e-13	67.4
MS.gene051544.t1	AT3G01080	50.877	57	27	1	102	158	205	260	3.53e-13	66.2
MS.gene051544.t1	AT5G45050	44.595	74	34	2	93	159	1165	1238	4.12e-13	66.6
MS.gene051544.t1	AT5G45050	44.595	74	34	2	93	159	1137	1210	4.23e-13	66.6
MS.gene051544.t1	AT5G45050	44.595	74	34	2	93	159	1026	1099	4.41e-13	66.2
MS.gene051544.t1	AT4G23550	38.043	92	51	2	68	158	111	197	1.47e-12	64.3
MS.gene051544.t1	AT2G46400	36.905	84	44	2	83	157	79	162	8.12e-11	59.3
MS.gene051544.t1	AT2G40750	39.726	73	36	2	93	157	138	210	8.53e-11	59.3
MS.gene051544.t1	AT2G40740	47.458	59	28	1	102	157	173	231	8.57e-11	59.3
MS.gene051544.t1	AT2G40740	47.458	59	28	1	102	157	182	240	9.10e-11	59.3
MS.gene051544.t1	AT5G24110	40.000	60	33	1	101	157	112	171	9.83e-11	58.9

Find 36 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAATATATATACCTTGGATT+AGG	0.247704	1.3:-7076813	None:intergenic
GATGATGAATTTGCTGTTCT+TGG	0.294438	1.3:-7076337	None:intergenic
TGGTTGCTAAAATCACTTTC+AGG	0.298136	1.3:-7076361	None:intergenic
AATATATATACCTTGGATTA+GGG	0.308746	1.3:-7076812	None:intergenic
GGGTACAGATGGAGGAAGTA+TGG	0.355517	1.3:+7076768	MS.gene051544:CDS
GTGGGTGTGCATGCCTTCAT+AGG	0.370161	1.3:-7077003	None:intergenic
GTGATTGCAGGAATTATTAT+AGG	0.370210	1.3:+7076907	MS.gene051544:intron
GAGGAAGTATGGAAAGAAAA+TGG	0.372428	1.3:+7076779	MS.gene051544:CDS
GAATTGGAAGAAGGAAGTTA+AGG	0.426465	1.3:+7076698	MS.gene051544:CDS
ACTAATAATATGAATATGAA+TGG	0.432599	1.3:+7076669	MS.gene051544:CDS
TGTTTGAGCTAGCAAGAACT+TGG	0.437457	1.3:-7077026	None:intergenic
ATATGAATGGAAACGAGAAT+TGG	0.438206	1.3:+7076682	MS.gene051544:CDS
TATTATAGGTGTTCAGTTGA+GGG	0.484385	1.3:+7076921	MS.gene051544:CDS
TGAGTTTCGATGACAATGAA+TGG	0.486049	1.3:+7076413	MS.gene051544:CDS
TTTCAAGCCAACGAAGTAGC+AGG	0.492097	1.3:+7076469	MS.gene051544:CDS
GCTGCCACCTGCTACTTCGT+TGG	0.493883	1.3:-7076476	None:intergenic
AAGTAGTCAGAGAGTTCAAA+TGG	0.505113	1.3:-7076391	None:intergenic
AAAACTAAAGACTCAGTGGT+TGG	0.518786	1.3:-7076448	None:intergenic
AGCAGGTGGCAGCCACATTG+AGG	0.519855	1.3:+7076486	MS.gene051544:CDS
GCAGGTGGCAGCCACATTGA+GGG	0.520107	1.3:+7076487	MS.gene051544:CDS
AGAGTTCAAATGGCCACTGC+TGG	0.523946	1.3:-7076381	None:intergenic
TTATTATAGGTGTTCAGTTG+AGG	0.524859	1.3:+7076920	MS.gene051544:CDS
CTGATTGAAATACTTGATGA+TGG	0.529008	1.3:+7076747	MS.gene051544:CDS
TATGTGATAACAACCTATGA+AGG	0.534897	1.3:+7076990	MS.gene051544:CDS
TACTTGATGATGGGTACAGA+TGG	0.541635	1.3:+7076757	MS.gene051544:CDS
TGGAAACGAGAATTGGAAGA+AGG	0.551212	1.3:+7076689	MS.gene051544:CDS
GAGCTAGCAAGAACTTGGGT+GGG	0.555150	1.3:-7077021	None:intergenic
ATTATAGGTGTTCAGTTGAG+GGG	0.580189	1.3:+7076922	MS.gene051544:CDS
TGAGCTAGCAAGAACTTGGG+TGG	0.613536	1.3:-7077022	None:intergenic
TGATTGAAATACTTGATGAT+GGG	0.620660	1.3:+7076748	MS.gene051544:CDS
GTTTGAGCTAGCAAGAACTT+GGG	0.621628	1.3:-7077025	None:intergenic
TTGATGATGGGTACAGATGG+AGG	0.631832	1.3:+7076760	MS.gene051544:CDS
TTAAGAACAGCCCTAATCCA+AGG	0.633554	1.3:+7076802	MS.gene051544:CDS
CAGGTGGCAGCCACATTGAG+GGG	0.636001	1.3:+7076488	MS.gene051544:CDS
CAAGCCAACGAAGTAGCAGG+TGG	0.667226	1.3:+7076472	MS.gene051544:CDS
AACTAGAAGACCCCTCAATG+TGG	0.699088	1.3:-7076498	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATGTAATAAATTAATTTCA+TGG	-	chr1.3:7076844-7076863	None:intergenic	10.0%
!!!	TATACATATATTTTCTTTAA+CGG	-	chr1.3:7076598-7076617	None:intergenic	10.0%
!!	ACTAATAATATGAATATGAA+TGG	+	chr1.3:7076669-7076688	MS.gene051544:CDS	15.0%
!!	AATATATATACCTTGGATTA+GGG	-	chr1.3:7076815-7076834	None:intergenic	20.0%
!!!	TGTCTTTAGCTTATAATTAT+TGG	+	chr1.3:7076619-7076638	MS.gene051544:intron	20.0%
!	CAATATATATACCTTGGATT+AGG	-	chr1.3:7076816-7076835	None:intergenic	25.0%
!	CTAATCCAAGGTATATATAT+TGG	+	chr1.3:7076814-7076833	MS.gene051544:intron	25.0%
!	GTATTCCAATATATATACCT+TGG	-	chr1.3:7076822-7076841	None:intergenic	25.0%
!!	TAAGCCAATTTTTATCTTAC+CGG	+	chr1.3:7076528-7076547	MS.gene051544:intron	25.0%
!!	TGATTGAAATACTTGATGAT+GGG	+	chr1.3:7076748-7076767	MS.gene051544:CDS	25.0%
	AAGACCGGTAAGATAAAAAT+TGG	-	chr1.3:7076535-7076554	None:intergenic	30.0%
	ATATGAATGGAAACGAGAAT+TGG	+	chr1.3:7076682-7076701	MS.gene051544:CDS	30.0%
	ATATGTATATGTGTGATTGC+AGG	+	chr1.3:7076895-7076914	MS.gene051544:intron	30.0%
	CTGATTGAAATACTTGATGA+TGG	+	chr1.3:7076747-7076766	MS.gene051544:CDS	30.0%
	GTGATTGCAGGAATTATTAT+AGG	+	chr1.3:7076907-7076926	MS.gene051544:intron	30.0%
	TATGTGATAACAACCTATGA+AGG	+	chr1.3:7076990-7077009	MS.gene051544:CDS	30.0%
	TATTATAGGTGTTCAGTTGA+GGG	+	chr1.3:7076921-7076940	MS.gene051544:CDS	30.0%
	TTATTATAGGTGTTCAGTTG+AGG	+	chr1.3:7076920-7076939	MS.gene051544:CDS	30.0%
	TTGAAAAACTAAAGACTCAG+TGG	-	chr1.3:7076455-7076474	None:intergenic	30.0%
!	TGTTACTGTTGTCATGTTTT+AGG	+	chr1.3:7076642-7076661	MS.gene051544:intron	30.0%
!!!	CTCTCAACTCTTTTTTTTAC+AGG	-	chr1.3:7076951-7076970	None:intergenic	30.0%
	AAAACTAAAGACTCAGTGGT+TGG	-	chr1.3:7076451-7076470	None:intergenic	35.0%
	AAGTAGTCAGAGAGTTCAAA+TGG	-	chr1.3:7076394-7076413	None:intergenic	35.0%
	ATTATAGGTGTTCAGTTGAG+GGG	+	chr1.3:7076922-7076941	MS.gene051544:CDS	35.0%
	GAATTGGAAGAAGGAAGTTA+AGG	+	chr1.3:7076698-7076717	MS.gene051544:CDS	35.0%
	TGAGTTTCGATGACAATGAA+TGG	+	chr1.3:7076413-7076432	MS.gene051544:CDS	35.0%
	TGGTTGCTAAAATCACTTTC+AGG	-	chr1.3:7076364-7076383	None:intergenic	35.0%
!	GAGGAAGTATGGAAAGAAAA+TGG	+	chr1.3:7076779-7076798	MS.gene051544:CDS	35.0%
!!	GATGATGAATTTGCTGTTCT+TGG	-	chr1.3:7076340-7076359	None:intergenic	35.0%
	TGGAAACGAGAATTGGAAGA+AGG	+	chr1.3:7076689-7076708	MS.gene051544:CDS	40.0%
	TTAAGAACAGCCCTAATCCA+AGG	+	chr1.3:7076802-7076821	MS.gene051544:CDS	40.0%
!!	TACTTGATGATGGGTACAGA+TGG	+	chr1.3:7076757-7076776	MS.gene051544:CDS	40.0%
	AACTAGAAGACCCCTCAATG+TGG	-	chr1.3:7076501-7076520	None:intergenic	45.0%
	TGCACAAGACGAACAAAGAC+CGG	-	chr1.3:7076550-7076569	None:intergenic	45.0%
	TTTCAAGCCAACGAAGTAGC+AGG	+	chr1.3:7076469-7076488	MS.gene051544:CDS	45.0%
!!	GTGATTTTAGCAACCAGCAG+TGG	+	chr1.3:7076368-7076387	MS.gene051544:CDS	45.0%
!!	TTGATGATGGGTACAGATGG+AGG	+	chr1.3:7076760-7076779	MS.gene051544:CDS	45.0%
	AGAGTTCAAATGGCCACTGC+TGG	-	chr1.3:7076384-7076403	None:intergenic	50.0%
	GGGTACAGATGGAGGAAGTA+TGG	+	chr1.3:7076768-7076787	MS.gene051544:CDS	50.0%
	CAAGCCAACGAAGTAGCAGG+TGG	+	chr1.3:7076472-7076491	MS.gene051544:CDS	55.0%
	GTGGGTGTGCATGCCTTCAT+AGG	-	chr1.3:7077006-7077025	None:intergenic	55.0%
	AGCAGGTGGCAGCCACATTG+AGG	+	chr1.3:7076486-7076505	MS.gene051544:CDS	60.0%
	CAGGTGGCAGCCACATTGAG+GGG	+	chr1.3:7076488-7076507	MS.gene051544:CDS	60.0%
	GCAGGTGGCAGCCACATTGA+GGG	+	chr1.3:7076487-7076506	MS.gene051544:CDS	60.0%
!	GCTGCCACCTGCTACTTCGT+TGG	-	chr1.3:7076479-7076498	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	7076322	7077040	7076322	ID=MS.gene051544
chr1.3	mRNA	7076322	7077040	7076322	ID=MS.gene051544.t1;Parent=MS.gene051544
chr1.3	exon	7076322	7076526	7076322	ID=MS.gene051544.t1.exon1;Parent=MS.gene051544.t1
chr1.3	CDS	7076322	7076526	7076322	ID=cds.MS.gene051544.t1;Parent=MS.gene051544.t1
chr1.3	exon	7076664	7076823	7076664	ID=MS.gene051544.t1.exon2;Parent=MS.gene051544.t1
chr1.3	CDS	7076664	7076823	7076664	ID=cds.MS.gene051544.t1;Parent=MS.gene051544.t1
chr1.3	exon	7076917	7077040	7076917	ID=MS.gene051544.t1.exon3;Parent=MS.gene051544.t1
chr1.3	CDS	7076917	7077040	7076917	ID=cds.MS.gene051544.t1;Parent=MS.gene051544.t1

Gene Sequence

>MS.gene051544

ATGACAGAGAAAAATCCAAGAACAGCAAATTCATCATCACCTGAAAGTGATTTTAGCAACCAGCAGTGGCCATTTGAACTCTCTGACTACTTGAGTTTCGATGACAATGAATGGCTACAAAACAATCCAACCACTGAGTCTTTAGTTTTTCAAGCCAACGAAGTAGCAGGTGGCAGCCACATTGAGGGGTCTTCTAGTTCAATCAGTAAGCCAATTTTTATCTTACCGGTCTTTGTTCGTCTTGTGCAGAGACTTGATTATTAATAAATTTTGCCGTTAAAGAAAATATATGTATATTGTCTTTAGCTTATAATTATTGGTGTTACTGTTGTCATGTTTTAGGAGATACTAATAATATGAATATGAATGGAAACGAGAATTGGAAGAAGGAAGTTAAGGAGAGAGTTGCATTCAAAACAAAGTCACTGATTGAAATACTTGATGATGGGTACAGATGGAGGAAGTATGGAAAGAAAATGGTTAAGAACAGCCCTAATCCAAGGTATATATATTGGAATACCATGAAATTAATTTATTACATATAGTTTATATATGTATCATTATGAGTATATTATATGTATATGTGTGATTGCAGGAATTATTATAGGTGTTCAGTTGAGGGGTGTCCTGTAAAAAAAAGAGTTGAGAGAGATAATAATGATTCGAGTTATGTGATAACAACCTATGAAGGCATGCACACCCACCCAAGTTCTTGCTAG

Protein sequence

>MS.gene051544.t1

MTEKNPRTANSSSPESDFSNQQWPFELSDYLSFDDNEWLQNNPTTESLVFQANEVAGGSHIEGSSSSIRDTNNMNMNGNENWKKEVKERVAFKTKSLIEILDDGYRWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDNNDSSYVITTYEGMHTHPSSC