Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49862.t1 | XP_003597042.1 | 77.9 | 267 | 33 | 2 | 1 | 248 | 1 | 260 | 3.40E-62 | 248.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49862.t1 | Q9FH37 | 63.3 | 177 | 56 | 3 | 81 | 248 | 58 | 234 | 5.3e-24 | 112.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49862.t1 | G7IKM3 | 77.9 | 267 | 33 | 2 | 1 | 248 | 1 | 260 | 2.4e-62 | 248.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49862.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049274 | MS.gene49862 | 0.808984 | 2.37E-50 | -1.69E-46 |
| MS.gene04932 | MS.gene49862 | 0.810138 | 1.34E-50 | -1.69E-46 |
| MS.gene05244 | MS.gene49862 | 0.802577 | 5.25E-49 | -1.69E-46 |
| MS.gene052702 | MS.gene49862 | 0.801866 | 7.35E-49 | -1.69E-46 |
| MS.gene054181 | MS.gene49862 | 0.818727 | 1.69E-52 | -1.69E-46 |
| MS.gene054290 | MS.gene49862 | 0.81606 | 6.72E-52 | -1.69E-46 |
| MS.gene054742 | MS.gene49862 | 0.815407 | 9.39E-52 | -1.69E-46 |
| MS.gene054884 | MS.gene49862 | 0.806294 | 8.82E-50 | -1.69E-46 |
| MS.gene056688 | MS.gene49862 | 0.822474 | 2.32E-53 | -1.69E-46 |
| MS.gene056856 | MS.gene49862 | 0.806645 | 7.44E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene49862 | 0.821044 | 4.98E-53 | -1.69E-46 |
| MS.gene058067 | MS.gene49862 | 0.819186 | 1.33E-52 | -1.69E-46 |
| MS.gene05926 | MS.gene49862 | 0.818634 | 1.77E-52 | -1.69E-46 |
| MS.gene059402 | MS.gene49862 | 0.821918 | 3.13E-53 | -1.69E-46 |
| MS.gene059955 | MS.gene49862 | 0.806151 | 9.46E-50 | -1.69E-46 |
| MS.gene060405 | MS.gene49862 | 0.811394 | 7.16E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49862.t1 | MTR_2g089000 | 85.393 | 267 | 13 | 3 | 1 | 248 | 1 | 260 | 4.29e-158 | 439 |
| MS.gene49862.t1 | MTR_4g081370 | 53.600 | 250 | 82 | 8 | 12 | 248 | 9 | 237 | 5.29e-77 | 233 |
| MS.gene49862.t1 | MTR_2g082640 | 51.210 | 248 | 84 | 8 | 12 | 248 | 9 | 230 | 3.82e-73 | 223 |
| MS.gene49862.t1 | MTR_4g081370 | 59.375 | 192 | 69 | 4 | 66 | 248 | 2 | 193 | 2.74e-70 | 214 |
| MS.gene49862.t1 | MTR_1g043430 | 49.412 | 170 | 84 | 2 | 81 | 248 | 77 | 246 | 2.33e-44 | 149 |
| MS.gene49862.t1 | MTR_4g075480 | 44.330 | 97 | 53 | 1 | 96 | 192 | 9 | 104 | 8.16e-19 | 83.6 |
| MS.gene49862.t1 | MTR_4g075480 | 44.330 | 97 | 53 | 1 | 96 | 192 | 37 | 132 | 1.12e-18 | 83.6 |
| MS.gene49862.t1 | MTR_1g032600 | 44.565 | 92 | 50 | 1 | 98 | 189 | 82 | 172 | 1.29e-18 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49862.t1 | AT5G54680 | 58.757 | 177 | 64 | 3 | 81 | 248 | 58 | 234 | 4.18e-66 | 205 |
| MS.gene49862.t1 | AT1G51070 | 55.440 | 193 | 78 | 5 | 64 | 248 | 34 | 226 | 6.76e-65 | 201 |
| MS.gene49862.t1 | AT1G51070 | 46.094 | 256 | 120 | 7 | 8 | 248 | 40 | 292 | 1.38e-63 | 201 |
| MS.gene49862.t1 | AT4G14410 | 49.697 | 165 | 79 | 2 | 86 | 248 | 115 | 277 | 9.64e-43 | 146 |
| MS.gene49862.t1 | AT4G14410 | 49.697 | 165 | 79 | 2 | 86 | 248 | 115 | 277 | 9.64e-43 | 146 |
| MS.gene49862.t1 | AT4G14410 | 49.697 | 165 | 79 | 2 | 86 | 248 | 121 | 283 | 1.21e-42 | 146 |
| MS.gene49862.t1 | AT3G23210 | 50.000 | 168 | 80 | 3 | 85 | 248 | 124 | 291 | 1.67e-40 | 141 |
| MS.gene49862.t1 | AT3G23210 | 50.000 | 168 | 80 | 3 | 85 | 248 | 153 | 320 | 2.35e-40 | 141 |
| MS.gene49862.t1 | AT3G19860 | 46.809 | 94 | 49 | 1 | 96 | 189 | 61 | 153 | 6.93e-18 | 82.0 |
| MS.gene49862.t1 | AT3G19860 | 46.809 | 94 | 49 | 1 | 96 | 189 | 8 | 100 | 9.29e-18 | 80.9 |
| MS.gene49862.t1 | AT3G19860 | 46.809 | 94 | 49 | 1 | 96 | 189 | 39 | 131 | 1.18e-17 | 80.9 |
| MS.gene49862.t1 | AT4G36060 | 44.792 | 96 | 52 | 1 | 94 | 189 | 27 | 121 | 3.00e-17 | 79.3 |
| MS.gene49862.t1 | AT4G36060 | 44.792 | 96 | 52 | 1 | 94 | 189 | 27 | 121 | 3.14e-17 | 79.0 |
| MS.gene49862.t1 | AT4G36060 | 44.792 | 96 | 52 | 1 | 94 | 189 | 45 | 139 | 7.23e-17 | 78.6 |
| MS.gene49862.t1 | AT4G36060 | 44.792 | 96 | 52 | 1 | 94 | 189 | 45 | 139 | 8.99e-17 | 78.2 |
Find 0 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAACTAGTTGAT+GGG | - | 15130:130676-130695 | None:intergenic | 15.0% |
| !! | ATATAAAAGATAGATAAAGA+CGG | - | 15130:130745-130764 | None:intergenic | 15.0% |
| !! | TAAAATAAATAACTAGTTGA+TGG | - | 15130:130677-130696 | None:intergenic | 15.0% |
| !! | TAAGTTAAACAATAAATTTG+AGG | + | 15130:129343-129362 | MS.gene49862:intron | 15.0% |
| !! | AAGTAAACTTACTTATACAA+GGG | - | 15130:130498-130517 | None:intergenic | 20.0% |
| !! | ACAAGTATTCTTAAATGTAT+AGG | + | 15130:130991-131010 | MS.gene49862:intron | 20.0% |
| !! | ATAGTAAACTAACTAATATG+AGG | - | 15130:130781-130800 | None:intergenic | 20.0% |
| !! | ATTACTTTATATTTGTAGCT+TGG | + | 15130:129452-129471 | MS.gene49862:intron | 20.0% |
| !! | TAGTAAACTAACTAATATGA+GGG | - | 15130:130780-130799 | None:intergenic | 20.0% |
| !! | TGCTTTATATTTCTCAAAAT+AGG | + | 15130:131020-131039 | MS.gene49862:intron | 20.0% |
| !! | TTCAATTTGACATGATTTAA+AGG | + | 15130:130165-130184 | MS.gene49862:intron | 20.0% |
| !!! | TTTTTCGTATCTTATTATAG+TGG | + | 15130:130354-130373 | MS.gene49862:intron | 20.0% |
| ! | AAAATCAATTGTAGAATCTG+CGG | + | 15130:129369-129388 | MS.gene49862:intron | 25.0% |
| ! | ACATTTAAGAATACTTGTTC+CGG | - | 15130:130989-131008 | None:intergenic | 25.0% |
| ! | AGTAAACTTACTTATACAAG+GGG | - | 15130:130497-130516 | None:intergenic | 25.0% |
| ! | CAAGTAAACTTACTTATACA+AGG | - | 15130:130499-130518 | None:intergenic | 25.0% |
| ! | CGAAAAAGTTAAAGAACTTA+AGG | + | 15130:130328-130347 | MS.gene49862:CDS | 25.0% |
| ! | GTAATAATCATGAGAAAACT+TGG | - | 15130:129437-129456 | None:intergenic | 25.0% |
| ! | TAAGATGATAACTAGTAGAT+AGG | - | 15130:130542-130561 | None:intergenic | 25.0% |
| ! | TGACATGATTTAAAGGTTTA+TGG | + | 15130:130172-130191 | MS.gene49862:intron | 25.0% |
| ! | TTATATTTGTAGCTTGGAAA+TGG | + | 15130:129458-129477 | MS.gene49862:intron | 25.0% |
| !! | CTTCAAGTTAGAATCAATTA+TGG | + | 15130:129692-129711 | MS.gene49862:intron | 25.0% |
| !! | GTAGTATACAACTTTTACAA+AGG | - | 15130:129918-129937 | None:intergenic | 25.0% |
| !!! | TAATATGCAACTGTTACTTT+AGG | + | 15130:130006-130025 | MS.gene49862:intron | 25.0% |
| !!! | TGATTTTGTGATGTTGATTT+TGG | + | 15130:129282-129301 | MS.gene49862:intron | 25.0% |
| AAATCAATTGTAGAATCTGC+GGG | + | 15130:129370-129389 | MS.gene49862:intron | 30.0% | |
| AAGATATATTACCGCTTTGA+AGG | - | 15130:129890-129909 | None:intergenic | 30.0% | |
| AATTAAGAAATGAAGCTGAG+AGG | + | 15130:130279-130298 | MS.gene49862:CDS | 30.0% | |
| ATATATTTGCAGCATGGAAA+TGG | + | 15130:129829-129848 | MS.gene49862:intron | 30.0% | |
| ATTTCAAAGTCACCTCATAT+GGG | - | 15130:129187-129206 | None:intergenic | 30.0% | |
| CAAGTAGACTAAATTAAGAG+GGG | - | 15130:130633-130652 | None:intergenic | 30.0% | |
| CAAGTTAGAATCAATTATGG+TGG | + | 15130:129695-129714 | MS.gene49862:intron | 30.0% | |
| CTATCTATATATTTGCAGCA+TGG | + | 15130:129823-129842 | MS.gene49862:intron | 30.0% | |
| CTCAGCTTCATTTCTTAATT+GGG | - | 15130:130279-130298 | None:intergenic | 30.0% | |
| GATGCTGCAATATAAATTTG+AGG | + | 15130:129634-129653 | MS.gene49862:intron | 30.0% | |
| GCAAGTAGACTAAATTAAGA+GGG | - | 15130:130634-130653 | None:intergenic | 30.0% | |
| GTTGTATACTACTATACTGT+TGG | + | 15130:129926-129945 | MS.gene49862:intron | 30.0% | |
| TAAAGTTATGTTTCCTTTGC+AGG | + | 15130:131077-131096 | MS.gene49862:intron | 30.0% | |
| TATTTCAAAGTCACCTCATA+TGG | - | 15130:129188-129207 | None:intergenic | 30.0% | |
| TCTCAGCTTCATTTCTTAAT+TGG | - | 15130:130280-130299 | None:intergenic | 30.0% | |
| TGATGAGAAAAATAAGCTGA+AGG | + | 15130:131119-131138 | MS.gene49862:CDS | 30.0% | |
| TGCAAGTAGACTAAATTAAG+AGG | - | 15130:130635-130654 | None:intergenic | 30.0% | |
| ! | AGATATATTACCGCTTTGAA+GGG | - | 15130:129518-129537 | None:intergenic | 30.0% |
| !! | TATTTTAGAAGCTCTGCATA+TGG | - | 15130:130897-130916 | None:intergenic | 30.0% |
| AACTTTGCTTACTCCAAAAG+TGG | + | 15130:129746-129765 | MS.gene49862:intron | 35.0% | |
| ATAATCATAGAGCCAAATGG+AGG | - | 15130:129019-129038 | None:intergenic | 35.0% | |
| ATCAAACACGCGCAAATTTA+AGG | - | 15130:129240-129259 | None:intergenic | 35.0% | |
| ATTCCAGGATAACCAATGAA+AGG | - | 15130:131252-131271 | None:intergenic | 35.0% | |
| CATGGAAATGGAATATTCAC+TGG | + | 15130:129841-129860 | MS.gene49862:CDS | 35.0% | |
| CTCACTTGATTCAACTGTAA+TGG | + | 15130:129485-129504 | MS.gene49862:intron | 35.0% | |
| CTTACTTATACAAGGGGTTT+CGG | - | 15130:130491-130510 | None:intergenic | 35.0% | |
| GAAGGGATAAATTGAATGAC+AGG | + | 15130:130081-130100 | MS.gene49862:CDS | 35.0% | |
| GAAGGTAGACAAAGAAAAGT+TGG | + | 15130:131137-131156 | MS.gene49862:CDS | 35.0% | |
| GAGATATATTACCGCTTTGA+AGG | - | 15130:129519-129538 | None:intergenic | 35.0% | |
| GATTCAACTGTACTGGAAAA+CGG | + | 15130:129863-129882 | MS.gene49862:CDS | 35.0% | |
| GTTATCCTGGAATTTCAATG+TGG | + | 15130:131259-131278 | MS.gene49862:CDS | 35.0% | |
| TCAAACACGCGCAAATTTAA+GGG | - | 15130:129239-129258 | None:intergenic | 35.0% | |
| TTACTTATACAAGGGGTTTC+GGG | - | 15130:130490-130509 | None:intergenic | 35.0% | |
| !! | AAAATACTCTGGAGTGGATT+TGG | + | 15130:130911-130930 | MS.gene49862:intron | 35.0% |
| !! | CTGTTACTTTAGGTTAAGGA+CGG | + | 15130:130016-130035 | MS.gene49862:intron | 35.0% |
| !! | GCAACTGTTACTTTAGGTTA+AGG | + | 15130:130012-130031 | MS.gene49862:intron | 35.0% |
| !! | GGTTAGCCTATTAAATGATG+CGG | + | 15130:130241-130260 | MS.gene49862:CDS | 35.0% |
| !! | TATTTCTGCTGCTGATTTCA+TGG | + | 15130:129056-129075 | MS.gene49862:CDS | 35.0% |
| !! | TCCATTTGGCTCTATGATTA+TGG | + | 15130:129018-129037 | MS.gene49862:CDS | 35.0% |
| AACTGCCACATTGAAATTCC+AGG | - | 15130:131267-131286 | None:intergenic | 40.0% | |
| AAGAATACTTGTTCCGGACT+TGG | - | 15130:130983-131002 | None:intergenic | 40.0% | |
| ACTGTTGGAATTCAACTGAG+TGG | + | 15130:129941-129960 | MS.gene49862:intron | 40.0% | |
| AGTATCTATATTGTGCCACG+TGG | + | 15130:130571-130590 | MS.gene49862:intron | 40.0% | |
| ATTAAATGATGCGGTTCGAG+TGG | + | 15130:130250-130269 | MS.gene49862:CDS | 40.0% | |
| CCAATGTGAACCTTGAGATA+TGG | + | 15130:130814-130833 | MS.gene49862:intron | 40.0% | |
| CCATATCTCAAGGTTCACAT+TGG | - | 15130:130817-130836 | None:intergenic | 40.0% | |
| CTCGAACCGCATCATTTAAT+AGG | - | 15130:130250-130269 | None:intergenic | 40.0% | |
| GCCATAATCATAGAGCCAAA+TGG | - | 15130:129022-129041 | None:intergenic | 40.0% | |
| TAAGTTTACTTGCACCTGTG+CGG | + | 15130:130507-130526 | MS.gene49862:intron | 40.0% | |
| TACAAGCTGATGCCTTTCAT+TGG | + | 15130:131237-131256 | MS.gene49862:CDS | 40.0% | |
| TACTTATACAAGGGGTTTCG+GGG | - | 15130:130489-130508 | None:intergenic | 40.0% | |
| TAGATAAAGATGTCGCCATG+TGG | - | 15130:130444-130463 | None:intergenic | 40.0% | |
| TGGAAAGTAACCCTTCAAAG+CGG | + | 15130:129505-129524 | MS.gene49862:intron | 40.0% | |
| TGTGATGTATCAACTGTAGC+AGG | - | 15130:131297-131316 | None:intergenic | 40.0% | |
| TTCACTGGATTCAACTGTAC+TGG | + | 15130:129856-129875 | MS.gene49862:CDS | 40.0% | |
| ! | AATCACAGAGAGTGTGTGTT+TGG | - | 15130:129774-129793 | None:intergenic | 40.0% |
| ! | ACAAAGGTCTAGTTCAGAGA+TGG | + | 15130:130943-130962 | MS.gene49862:intron | 40.0% |
| ! | ACTTGCACATGTGTTGATCA+CGG | + | 15130:130648-130667 | MS.gene49862:intron | 40.0% |
| ! | AGGCTAACCTTGTCAGTTTT+GGG | - | 15130:130230-130249 | None:intergenic | 40.0% |
| ! | ATCATATGCATCTAGCTCCA+AGG | + | 15130:130040-130059 | MS.gene49862:CDS | 40.0% |
| ! | ATGCCTTTCATTGGTTATCC+TGG | + | 15130:131246-131265 | MS.gene49862:CDS | 40.0% |
| ! | TAGGCTAACCTTGTCAGTTT+TGG | - | 15130:130231-130250 | None:intergenic | 40.0% |
| !! | GCAGAGCTTCTAAAATACTC+TGG | + | 15130:130900-130919 | MS.gene49862:intron | 40.0% |
| !! | GCTTCTAAAATACTCTGGAG+TGG | + | 15130:130905-130924 | MS.gene49862:intron | 40.0% |
| !! | TAGATAAAGACGGTGTCATG+TGG | - | 15130:130735-130754 | None:intergenic | 40.0% |
| !! | TGTGTGTTTGGTTCCACTTT+TGG | - | 15130:129762-129781 | None:intergenic | 40.0% |
| AAATGAAGCTGAGAGGCTCA+AGG | + | 15130:130286-130305 | MS.gene49862:CDS | 45.0% | |
| ATGGATATGGATTCCACAGG+TGG | + | 15130:128991-129010 | MS.gene49862:CDS | 45.0% | |
| GATTTGGACTTGTGGCACAA+AGG | + | 15130:130927-130946 | MS.gene49862:intron | 45.0% | |
| GCACAACGTGGATAACTGAA+CGG | - | 15130:130713-130732 | None:intergenic | 45.0% | |
| GTGTGCTCAACCATATCTCA+AGG | - | 15130:130827-130846 | None:intergenic | 45.0% | |
| TCAAAGTCACCTCATATGGG+AGG | - | 15130:129184-129203 | None:intergenic | 45.0% | |
| TCCAATTGCATGGCTGCTAA+AGG | + | 15130:131201-131220 | MS.gene49862:CDS | 45.0% | |
| TCCTTTAGCAGCCATGCAAT+TGG | - | 15130:131205-131224 | None:intergenic | 45.0% | |
| TCTTTCTTCTCAGCCTGCAA+AGG | - | 15130:131093-131112 | None:intergenic | 45.0% | |
| ! | CTTGCACATGTGTTGATCAC+GGG | + | 15130:130649-130668 | MS.gene49862:intron | 45.0% |
| AAGCTGAGAGGCTCAAGGAA+AGG | + | 15130:130291-130310 | MS.gene49862:CDS | 50.0% | |
| AGCACACATAGACCTTGCCA+CGG | + | 15130:130840-130859 | MS.gene49862:intron | 50.0% | |
| AGTCACCTCATATGGGAGGA+AGG | - | 15130:129180-129199 | None:intergenic | 50.0% | |
| CAGCTTCCTCTCCAATTGCA+TGG | + | 15130:131191-131210 | MS.gene49862:CDS | 50.0% | |
| CATGCAATTGGAGAGGAAGC+TGG | - | 15130:131193-131212 | None:intergenic | 50.0% | |
| CTAGTTCAGAGATGGACCGT+GGG | + | 15130:130951-130970 | MS.gene49862:intron | 50.0% | |
| GTTCTCCATGTTGTGCCACA+TGG | + | 15130:130426-130445 | MS.gene49862:intron | 50.0% | |
| TACGCTGCCCAAAACTGACA+AGG | + | 15130:130220-130239 | MS.gene49862:CDS | 50.0% | |
| TAGCAGCCATGCAATTGGAG+AGG | - | 15130:131200-131219 | None:intergenic | 50.0% | |
| TCGATAAAGACGTTGCCACG+TGG | - | 15130:130589-130608 | None:intergenic | 50.0% | |
| TGAGTCTGAGAGTGAGACTG+AGG | - | 15130:129141-129160 | None:intergenic | 50.0% | |
| TGGAAAACGGCCCTTCAAAG+CGG | + | 15130:129876-129895 | MS.gene49862:CDS | 50.0% | |
| ! | AGGTCGTGAGAAAGTGCGAA+GGG | + | 15130:130064-130083 | MS.gene49862:CDS | 50.0% |
| ! | CTGGAGTGGATTTGGACTTG+TGG | + | 15130:130919-130938 | MS.gene49862:intron | 50.0% |
| ! | TATGCATCTAGCTCCAAGGC+AGG | + | 15130:130044-130063 | MS.gene49862:CDS | 50.0% |
| ! | TCTAGTTCAGAGATGGACCG+TGG | + | 15130:130950-130969 | MS.gene49862:intron | 50.0% |
| !!! | TCAGTTTTGGGCAGCGTATC+AGG | - | 15130:130218-130237 | None:intergenic | 50.0% |
| AAACGATGATCTGCACGCCG+TGG | - | 15130:130860-130879 | None:intergenic | 55.0% | |
| AAGCAACTGGAGGTCGAAGC+AGG | - | 15130:131326-131345 | None:intergenic | 55.0% | |
| ACGGCGTGCAGATCATCGTT+TGG | + | 15130:130859-130878 | MS.gene49862:intron | 55.0% | |
| ACTTGTTCCGGACTTGGCCA+CGG | - | 15130:130977-130996 | None:intergenic | 55.0% | |
| ATAGGACCTATGTGCCGCAC+AGG | - | 15130:130524-130543 | None:intergenic | 55.0% | |
| CACCTCATATGGGAGGAAGG+AGG | - | 15130:129177-129196 | None:intergenic | 55.0% | |
| CACTTTCTCACGACCTGCCT+TGG | - | 15130:130060-130079 | None:intergenic | 55.0% | |
| CCAAATGGAGGAACCACCTG+TGG | - | 15130:129007-129026 | None:intergenic | 55.0% | |
| CCACAGGTGGTTCCTCCATT+TGG | + | 15130:129004-129023 | MS.gene49862:CDS | 55.0% | |
| TGCCTCCTTCCTCCCATATG+AGG | + | 15130:129172-129191 | MS.gene49862:CDS | 55.0% | |
| TGTCGCCATGTGGCACAACA+TGG | - | 15130:130434-130453 | None:intergenic | 55.0% | |
| ! | AGAGTGAGACTGAGGCATCC+AGG | - | 15130:129133-129152 | None:intergenic | 55.0% |
| ! | CAGGTCGTGAGAAAGTGCGA+AGG | + | 15130:130063-130082 | MS.gene49862:CDS | 55.0% |
| ! | CTGCTGCTTCTGCTTTCACC+TGG | + | 15130:129112-129131 | MS.gene49862:CDS | 55.0% |
| ATGATCTGCACGCCGTGGCA+AGG | - | 15130:130855-130874 | None:intergenic | 60.0% | |
| CTTGCACCTGTGCGGCACAT+AGG | + | 15130:130515-130534 | MS.gene49862:intron | 60.0% | |
| !! | CGGTGTCATGTGGCACAACG+TGG | - | 15130:130725-130744 | None:intergenic | 60.0% |
| CAGAGATGGACCGTGGGCCG+TGG | + | 15130:130957-130976 | MS.gene49862:intron | 70.0% | |
| CCGGACTTGGCCACGGCCCA+CGG | - | 15130:130970-130989 | None:intergenic | 75.0% | |
| CCGTGGGCCGTGGCCAAGTC+CGG | + | 15130:130967-130986 | MS.gene49862:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15130 | gene | 128991 | 131347 | 128991 | ID=MS.gene49862 |
| 15130 | mRNA | 128991 | 131347 | 128991 | ID=MS.gene49862.t1;Parent=MS.gene49862 |
| 15130 | exon | 128991 | 129193 | 128991 | ID=MS.gene49862.t1.exon1;Parent=MS.gene49862.t1 |
| 15130 | CDS | 128991 | 129193 | 128991 | ID=cds.MS.gene49862.t1;Parent=MS.gene49862.t1 |
| 15130 | exon | 129841 | 129897 | 129841 | ID=MS.gene49862.t1.exon2;Parent=MS.gene49862.t1 |
| 15130 | CDS | 129841 | 129897 | 129841 | ID=cds.MS.gene49862.t1;Parent=MS.gene49862.t1 |
| 15130 | exon | 130028 | 130102 | 130028 | ID=MS.gene49862.t1.exon3;Parent=MS.gene49862.t1 |
| 15130 | CDS | 130028 | 130102 | 130028 | ID=cds.MS.gene49862.t1;Parent=MS.gene49862.t1 |
| 15130 | exon | 130187 | 130349 | 130187 | ID=MS.gene49862.t1.exon4;Parent=MS.gene49862.t1 |
| 15130 | CDS | 130187 | 130349 | 130187 | ID=cds.MS.gene49862.t1;Parent=MS.gene49862.t1 |
| 15130 | exon | 131099 | 131347 | 131099 | ID=MS.gene49862.t1.exon5;Parent=MS.gene49862.t1 |
| 15130 | CDS | 131099 | 131347 | 131099 | ID=cds.MS.gene49862.t1;Parent=MS.gene49862.t1 |
| Gene Sequence |
| Protein sequence |
