AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057544


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057544.t1 MTR_7g012020 95.957 371 13 1 1 371 1 369 0.0 734
MS.gene057544.t1 MTR_7g012040 79.515 371 73 2 1 371 1 368 0.0 608
MS.gene057544.t1 MTR_7g011900 76.757 370 84 1 2 371 3 370 0.0 593
MS.gene057544.t1 MTR_7g011990 73.315 371 92 2 2 371 3 367 0.0 567
MS.gene057544.t1 MTR_7g012070 72.386 373 100 2 2 371 3 375 0.0 565
MS.gene057544.t1 MTR_7g012090 72.386 373 100 2 2 371 3 375 0.0 562
MS.gene057544.t1 MTR_7g012020 95.620 274 10 1 1 274 1 272 0.0 536
MS.gene057544.t1 MTR_2g055940 68.750 352 107 1 20 371 15 363 0.0 510
MS.gene057544.t1 MTR_7g012020 94.882 254 11 1 1 254 1 252 1.33e-177 493
MS.gene057544.t1 MTR_1g096310 62.125 367 135 3 7 371 8 372 5.73e-167 471
MS.gene057544.t1 MTR_3g021440 53.134 367 162 6 10 371 9 370 1.62e-128 374
MS.gene057544.t1 MTR_3g021430 53.039 362 163 6 12 371 1 357 6.80e-128 371
MS.gene057544.t1 MTR_1g036490 48.787 371 184 6 4 371 3 370 7.92e-127 369
MS.gene057544.t1 MTR_1g036460 48.518 371 185 5 4 371 3 370 6.35e-126 367
MS.gene057544.t1 MTR_1g036510 50.565 354 170 4 21 371 33 384 1.19e-118 349
MS.gene057544.t1 MTR_3g092900 44.384 365 195 6 8 371 6 363 1.40e-103 310
MS.gene057544.t1 MTR_5g098170 42.582 364 197 9 13 371 7 363 5.54e-94 285
MS.gene057544.t1 MTR_7g118300 42.162 370 205 8 4 371 13 375 2.13e-92 281
MS.gene057544.t1 MTR_0591s0010 39.452 365 208 8 13 371 20 377 4.91e-85 263
MS.gene057544.t1 MTR_1g036510 53.333 255 115 3 21 273 33 285 4.49e-84 258
MS.gene057544.t1 MTR_1g050220 43.769 329 133 6 25 351 6 284 1.53e-83 256
MS.gene057544.t1 MTR_7g118320 38.420 367 211 9 12 371 4 362 7.53e-81 251
MS.gene057544.t1 MTR_8g068690 38.736 364 212 8 13 371 19 376 4.58e-80 250
MS.gene057544.t1 MTR_8g068750 37.637 364 216 8 13 371 20 377 1.02e-77 244
MS.gene057544.t1 MTR_8g068870 38.192 343 200 7 34 371 28 363 6.19e-77 241
MS.gene057544.t1 MTR_1g036510 51.709 234 109 3 21 252 33 264 2.13e-72 226
MS.gene057544.t1 MTR_8g024160 37.465 355 175 6 18 371 20 328 5.86e-71 225
MS.gene057544.t1 MTR_6g060290 60.753 186 53 3 2 185 3 170 1.69e-68 213
MS.gene057544.t1 MTR_6g078850 37.709 358 209 8 20 370 32 382 8.21e-68 222
MS.gene057544.t1 MTR_8g068570 36.667 330 174 6 13 338 20 318 1.58e-66 213
MS.gene057544.t1 MTR_2g072790 37.423 326 190 9 32 352 20 336 1.85e-63 206
MS.gene057544.t1 MTR_3g096050 35.977 353 209 8 25 371 17 358 4.16e-60 198
MS.gene057544.t1 MTR_8g068730 33.791 364 198 9 13 371 20 345 3.70e-58 192
MS.gene057544.t1 MTR_8g068690 38.577 267 155 6 13 275 19 280 1.09e-55 184
MS.gene057544.t1 MTR_3g096070 35.119 336 183 8 25 356 17 321 7.00e-55 184
MS.gene057544.t1 MTR_0017s0100 33.824 340 200 13 40 370 44 367 9.80e-51 174
MS.gene057544.t1 MTR_8g068600 37.209 258 146 6 45 291 27 279 1.77e-48 165
MS.gene057544.t1 MTR_0079s0070 34.862 327 189 12 40 357 10 321 1.43e-47 164
MS.gene057544.t1 MTR_4g038440 34.756 328 190 12 39 357 43 355 3.93e-47 164
MS.gene057544.t1 MTR_3g083620 32.000 325 200 8 38 356 38 347 8.50e-46 160
MS.gene057544.t1 MTR_8g068740 33.692 279 144 7 13 287 20 261 1.56e-43 152
MS.gene057544.t1 MTR_1g076940 28.614 339 225 7 39 370 32 360 8.66e-43 152
MS.gene057544.t1 MTR_3g096050 36.400 250 151 5 25 273 17 259 3.40e-41 145
MS.gene057544.t1 MTR_5g074680 28.324 346 227 10 33 370 27 359 1.19e-38 142
MS.gene057544.t1 MTR_5g074600 27.457 346 230 9 33 370 26 358 2.48e-38 140
MS.gene057544.t1 MTR_4g033015 32.840 338 209 9 39 366 32 361 1.05e-37 139
MS.gene057544.t1 MTR_4g088345 29.532 342 217 11 37 370 30 355 1.12e-37 139
MS.gene057544.t1 MTR_7g024520 28.783 337 216 10 37 369 29 345 1.21e-37 139
MS.gene057544.t1 MTR_5g074580 28.198 344 230 9 33 370 27 359 2.47e-37 138
MS.gene057544.t1 MTR_4g088340 27.859 341 224 9 37 370 7 332 5.32e-37 136
MS.gene057544.t1 MTR_4g033200 32.544 338 210 9 39 366 32 361 9.15e-37 137
MS.gene057544.t1 MTR_7g014510 27.245 323 217 7 40 356 33 343 9.19e-37 136
MS.gene057544.t1 MTR_8g068620 53.636 110 51 0 165 274 2 111 1.49e-36 129
MS.gene057544.t1 MTR_7g014570 28.060 335 221 8 40 370 33 351 5.12e-36 134
MS.gene057544.t1 MTR_7g024500 28.319 339 215 10 37 369 29 345 6.50e-36 134
MS.gene057544.t1 MTR_4g079160 30.793 328 198 12 40 356 32 341 6.54e-36 134
MS.gene057544.t1 MTR_4g088200 29.730 333 216 9 33 357 26 348 8.81e-34 129
MS.gene057544.t1 MTR_5g074540 31.222 221 147 2 141 356 107 327 4.11e-33 126
MS.gene057544.t1 MTR_4g033150 29.674 337 221 8 39 366 32 361 1.06e-32 125
MS.gene057544.t1 MTR_5g074610 28.689 244 140 5 133 370 110 325 6.49e-29 114
MS.gene057544.t1 MTR_4g038440 33.613 238 143 7 40 273 44 270 2.07e-28 112
MS.gene057544.t1 MTR_4g088190 29.641 334 218 8 33 357 26 351 2.86e-28 114
MS.gene057544.t1 MTR_1g076930 28.099 242 158 6 37 273 7 237 1.63e-27 108
MS.gene057544.t1 MTR_4g033170 29.119 261 168 7 39 295 32 279 6.87e-27 109
MS.gene057544.t1 MTR_4g033085 29.231 260 167 7 39 294 32 278 1.34e-25 106
MS.gene057544.t1 MTR_6g060280 76.364 55 8 1 225 274 1 55 2.39e-20 84.7
MS.gene057544.t1 MTR_0794s0020 28.319 226 149 7 39 259 32 249 1.20e-17 82.0
MS.gene057544.t1 MTR_8g068760 38.000 100 60 2 273 371 135 233 1.73e-13 69.7
MS.gene057544.t1 MTR_8g068580 37.234 94 53 3 281 371 43 133 3.73e-12 63.5
MS.gene057544.t1 MTR_7g118310 42.045 88 35 3 177 248 10 97 2.26e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057544.t1 AT5G54160 47.025 353 179 5 20 371 16 361 1.32e-106 317
MS.gene057544.t1 AT1G77520 38.919 370 213 7 11 371 16 381 1.16e-86 267
MS.gene057544.t1 AT1G51990 37.677 353 215 4 20 370 12 361 4.71e-84 260
MS.gene057544.t1 AT1G51990 37.677 353 215 4 20 370 12 361 2.80e-83 258
MS.gene057544.t1 AT1G77530 40.449 356 200 7 24 371 30 381 2.34e-77 243
MS.gene057544.t1 AT1G33030 39.429 350 198 9 27 371 10 350 1.86e-76 240
MS.gene057544.t1 AT1G21130 39.833 359 198 10 14 361 13 364 1.24e-74 236
MS.gene057544.t1 AT1G63140 37.950 361 210 7 20 371 26 381 2.94e-74 235
MS.gene057544.t1 AT1G21100 39.496 357 198 10 16 361 15 364 3.84e-74 234
MS.gene057544.t1 AT1G63140 37.275 389 218 9 4 371 18 401 4.02e-74 236
MS.gene057544.t1 AT1G21110 40.336 357 195 10 16 361 15 364 1.25e-73 233
MS.gene057544.t1 AT1G21120 39.496 357 198 10 16 361 15 364 1.88e-72 230
MS.gene057544.t1 AT1G21120 39.496 357 198 10 16 361 63 412 6.69e-72 230
MS.gene057544.t1 AT5G53810 37.391 345 201 8 37 371 39 378 1.16e-70 226
MS.gene057544.t1 AT1G76790 38.649 370 202 11 17 371 6 365 7.99e-67 216
MS.gene057544.t1 AT3G53140 35.650 331 192 7 32 351 20 340 8.58e-60 197
MS.gene057544.t1 AT1G62900 41.748 206 117 2 168 371 1 205 2.76e-53 175
MS.gene057544.t1 AT1G33030 39.357 249 143 6 27 273 10 252 8.04e-52 174
MS.gene057544.t1 AT1G33030 39.357 249 143 6 27 273 10 252 8.49e-52 173
MS.gene057544.t1 AT5G37170 33.856 319 169 9 62 371 49 334 1.92e-51 175
MS.gene057544.t1 AT5G37170 39.899 198 115 3 177 371 38 234 4.17e-48 163
MS.gene057544.t1 AT1G21130 40.441 272 146 9 14 276 13 277 2.88e-46 160
MS.gene057544.t1 AT5G37170 40.107 187 108 3 188 371 1 186 1.47e-45 155
MS.gene057544.t1 AT1G63140 36.897 290 160 7 4 274 18 303 6.32e-45 157
MS.gene057544.t1 AT1G77530 41.277 235 129 5 24 252 30 261 7.09e-41 145
MS.gene057544.t1 AT4G35160 32.343 303 184 9 70 356 70 367 5.74e-37 137
MS.gene057544.t1 AT4G35150 33.654 208 124 4 161 356 105 310 1.19e-36 135
MS.gene057544.t1 AT1G63140 35.636 275 154 7 4 259 18 288 2.22e-35 131

Find 72 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATGGTGATTCTTATT+TGG 0.110334 7.2:+85240949 MS.gene057544:CDS
GGTAGCATAGTGAGAGTTTA+TGG 0.246664 7.2:+85240893 MS.gene057544:CDS
TCTGTTGGTTCTAGATCTTC+TGG 0.251949 7.2:-85242817 None:intergenic
TGTGAAGGAATATGAGAGTT+TGG 0.271292 7.2:+85242906 MS.gene057544:CDS
GAAAATGGTGATTCTTATTT+GGG 0.280555 7.2:+85240950 MS.gene057544:CDS
TGTCTTGCTTTCTCTATCAT+TGG 0.299632 7.2:+85242964 MS.gene057544:CDS
ATTCTCTTTATCATTGGTAT+AGG 0.305034 7.2:-85240582 None:intergenic
AACATACGATCGAGCCTATT+CGG 0.337571 7.2:-85240815 None:intergenic
GTCTCACCCTGCTTTGTCAA+TGG 0.339346 7.2:+85240991 MS.gene057544:CDS
CTCTAAATACCCATCAATAA+AGG 0.344031 7.2:+85242025 MS.gene057544:CDS
AAATTAATTGCCTTTATTGA+TGG 0.347116 7.2:-85242035 None:intergenic
CACATGATTCTCTTTATCAT+TGG 0.364383 7.2:-85240588 None:intergenic
ATAAGAATAAGCTTTCCATT+TGG 0.401363 7.2:-85242781 None:intergenic
TATAGGCTGTCAGCCATAAT+TGG 0.407768 7.2:+85242707 MS.gene057544:intron
TATGGTACTTGGTGCCAATA+TGG 0.415869 7.2:+85240658 MS.gene057544:CDS
TTCTAGATCTTCTGGTTGCA+AGG 0.420081 7.2:-85242809 None:intergenic
CTCTTCTGTCTGTTTCTACT+CGG 0.428133 7.2:+85240858 MS.gene057544:CDS
TACAAAGCTTTGCCTCCAAA+TGG 0.428651 7.2:+85242766 MS.gene057544:CDS
AATTAATTGCCTTTATTGAT+GGG 0.430852 7.2:-85242034 None:intergenic
CATTTAGGCATTGAATATGT+TGG 0.442708 7.2:+85242183 MS.gene057544:intron
GTGAAGGAATATGAGAGTTT+GGG 0.444889 7.2:+85242907 MS.gene057544:CDS
AACACTCTGATTTGCCGAAT+AGG 0.445684 7.2:+85240801 MS.gene057544:CDS
AACCGCAGGAAACACCATAT+TGG 0.452926 7.2:-85240672 None:intergenic
GAGAGTTTGGGAAAACGATC+TGG 0.456073 7.2:+85242919 MS.gene057544:CDS
TATCATTGTCATCTATTTGT+GGG 0.458069 7.2:-85240625 None:intergenic
ATATCAACTTTGGTTGATGT+AGG 0.461312 7.2:+85241969 MS.gene057544:CDS
TTGATATTCCCTCAAATCCT+TGG 0.462356 7.2:-85241953 None:intergenic
AGAATAAGCTTTCCATTTGG+AGG 0.465723 7.2:-85242778 None:intergenic
CACTATGCTACCATCATCAT+TGG 0.468574 7.2:-85240882 None:intergenic
AACCAACAGATGTATCTAGA+TGG 0.477307 7.2:+85242830 MS.gene057544:CDS
TATCAACTTTGGTTGATGTA+GGG 0.479740 7.2:+85241970 MS.gene057544:CDS
TTTATTTGATATCATTGCTA+AGG 0.484926 7.2:+85240718 MS.gene057544:CDS
ATCAACTTTGGTTGATGTAG+GGG 0.485080 7.2:+85241971 MS.gene057544:CDS
GTATCATTGTCATCTATTTG+TGG 0.485841 7.2:-85240626 None:intergenic
ACACTCTCTGCTATGGTACT+TGG 0.489061 7.2:+85240647 MS.gene057544:CDS
GTAGCATAGTGAGAGTTTAT+GGG 0.492258 7.2:+85240894 MS.gene057544:CDS
ATTTGAGGGAATATCAACTT+TGG 0.500220 7.2:+85241959 MS.gene057544:CDS
AAGGAAAGTTCACATAATGA+TGG 0.500299 7.2:+85240737 MS.gene057544:CDS
TTTCTCTATCATTGGAGTCA+TGG 0.521287 7.2:+85242972 MS.gene057544:CDS
TAACTTTGAAGCAATTTCAA+AGG 0.526373 7.2:-85240771 None:intergenic
TCTAGATCTTCTGGTTGCAA+GGG 0.529836 7.2:-85242808 None:intergenic
AGGAGATGTCATAATGATCA+AGG 0.530011 7.2:+85242233 MS.gene057544:CDS
TACCACACCATTGACAAAGC+AGG 0.536967 7.2:-85240998 None:intergenic
TTAGGCATTGAATATGTTGG+AGG 0.537928 7.2:+85242186 MS.gene057544:intron
GTTTATGGGATCACACCATC+TGG 0.539788 7.2:+85240908 MS.gene057544:CDS
GAAGCAATTATTGATCCAGA+AGG 0.539977 7.2:+85241798 MS.gene057544:CDS
AAGCAATTATTGATCCAGAA+GGG 0.545644 7.2:+85241799 MS.gene057544:CDS
GGCAAATCAGAGTGTTGAGT+TGG 0.551660 7.2:-85240794 None:intergenic
AACATGATGTTTGTCACAGC+TGG 0.557381 7.2:+85242868 MS.gene057544:CDS
CAATGATACACTCTCTGCTA+TGG 0.557805 7.2:+85240640 MS.gene057544:CDS
TTAAATATTTCATTTATCCG+TGG 0.559749 7.2:-85241876 None:intergenic
GAAAATACACCACCTTGTCC+AGG 0.565413 7.2:+85242077 MS.gene057544:CDS
GTTTGTCACAGCTGGTGGAA+TGG 0.572866 7.2:+85242876 MS.gene057544:CDS
TTGACAAAATATTTACCAGA+TGG 0.581272 7.2:-85240923 None:intergenic
ATTGCAGCGTTAAGAACCGC+AGG 0.587759 7.2:-85240686 None:intergenic
ATCATTATGACATCTCCTTG+TGG 0.589120 7.2:-85242228 None:intergenic
TCTACTCGGACCAATGATGA+TGG 0.591740 7.2:+85240872 MS.gene057544:CDS
ACCACACCATTGACAAAGCA+GGG 0.592656 7.2:-85240997 None:intergenic
GGCTGTCAGCCATAATTGGT+CGG 0.599510 7.2:+85242711 MS.gene057544:intron
AGCCATCTAGATACATCTGT+TGG 0.602429 7.2:-85242832 None:intergenic
ATCATTGTCATCTATTTGTG+GGG 0.602565 7.2:-85240624 None:intergenic
ACCCTGCTTTGTCAATGGTG+TGG 0.605546 7.2:+85240996 MS.gene057544:CDS
ATGATGTTTGTCACAGCTGG+TGG 0.606417 7.2:+85242871 MS.gene057544:CDS
AATATTTAACAAATCAATGA+CGG 0.613308 7.2:+85241890 MS.gene057544:CDS
TCAACTTTGGTTGATGTAGG+GGG 0.614546 7.2:+85241972 MS.gene057544:CDS
AATACTTTAAGAAAGATCCA+CGG 0.624636 7.2:+85241859 MS.gene057544:CDS
AGCAATTATTGATCCAGAAG+GGG 0.627732 7.2:+85241800 MS.gene057544:CDS
AGAAATGGATTACCTGGACA+AGG 0.660847 7.2:-85242089 None:intergenic
TGCCAATATGGTGTTTCCTG+CGG 0.681065 7.2:+85240670 MS.gene057544:CDS
ATGTTTGAAAGTGTTCCACA+AGG 0.690688 7.2:+85242213 MS.gene057544:CDS
TGGAATGGAAAGAAGTGTGA+AGG 0.698054 7.2:+85242891 MS.gene057544:CDS
AATGGATTACCTGGACAAGG+TGG 0.711936 7.2:-85242086 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATATTGTAAATTAAAC+TGG - chr7.2:85242143-85242162 None:intergenic 10.0%
!! ATATTTACTTATTTAAATAC+TGG + chr7.2:85241245-85241264 MS.gene057544:intron 10.0%
!! TAAAAAAATTGAATATTTGT+AGG + chr7.2:85241200-85241219 MS.gene057544:intron 10.0%
!!! AAACATTCTAAAAAATAAAT+AGG + chr7.2:85242389-85242408 MS.gene057544:intron 10.0%
!!! CATATATATAACAAATTTTT+AGG - chr7.2:85242491-85242510 None:intergenic 10.0%
!! AAAATTTCCAAATTTCATTT+AGG + chr7.2:85242168-85242187 MS.gene057544:intron 15.0%
!! AATATTTAACAAATCAATGA+CGG + chr7.2:85241890-85241909 MS.gene057544:CDS 15.0%
!! ATCAAACTTATAAAATTTCA+TGG - chr7.2:85241511-85241530 None:intergenic 15.0%
!! ATGTTGTGTATAATAAATTA+TGG - chr7.2:85241644-85241663 None:intergenic 15.0%
!! CTCATTTATTAAAACTAATA+TGG + chr7.2:85242536-85242555 MS.gene057544:intron 15.0%
!! TGTTGTGTATAATAAATTAT+GGG - chr7.2:85241643-85241662 None:intergenic 15.0%
!!! ATTCTTCAGTTTTTAATTTT+TGG - chr7.2:85242612-85242631 None:intergenic 15.0%
!!! CAAATATTTTTATAATGTGT+AGG + chr7.2:85241763-85241782 MS.gene057544:intron 15.0%
!!! TTCCTTTTTAAAAAATTAGA+GGG - chr7.2:85242454-85242473 None:intergenic 15.0%
!!! TTTCCTTTTTAAAAAATTAG+AGG - chr7.2:85242455-85242474 None:intergenic 15.0%
!! AAAAATTATCACATGAGAAA+TGG - chr7.2:85242107-85242126 None:intergenic 20.0%
!! AAATCGTGAATATAAATTGT+AGG + chr7.2:85241285-85241304 MS.gene057544:intron 20.0%
!! AAATTAATTGCCTTTATTGA+TGG - chr7.2:85242038-85242057 None:intergenic 20.0%
!! AATTAATTGCCTTTATTGAT+GGG - chr7.2:85242037-85242056 None:intergenic 20.0%
!! ATATGGATGTATTAATTCTT+AGG + chr7.2:85242553-85242572 MS.gene057544:intron 20.0%
!! ATGTAAAAACTAAAACTAGT+GGG - chr7.2:85242290-85242309 None:intergenic 20.0%
!! CTACAATAACTAATATCATT+AGG - chr7.2:85241591-85241610 None:intergenic 20.0%
!! CTTTAACAAAATCATTACAA+TGG + chr7.2:85241460-85241479 MS.gene057544:intron 20.0%
!! TAGCAATAAAATATAATCCA+AGG - chr7.2:85242689-85242708 None:intergenic 20.0%
!! TATGTAAAAACTAAAACTAG+TGG - chr7.2:85242291-85242310 None:intergenic 20.0%
!! TTAAATATTTCATTTATCCG+TGG - chr7.2:85241879-85241898 None:intergenic 20.0%
!! TTTATTTGATATCATTGCTA+AGG + chr7.2:85240718-85240737 MS.gene057544:CDS 20.0%
!!! GGATTATATTTTATTGCTAT+AGG + chr7.2:85242690-85242709 MS.gene057544:intron 20.0%
!!! TAACAATATTTTTGTATCCT+TGG + chr7.2:85242669-85242688 MS.gene057544:intron 20.0%
!!! TATTTTGTCAAGTATGAAAA+TGG + chr7.2:85240935-85240954 MS.gene057544:CDS 20.0%
! AAGAATTATGCTTTCATACA+TGG - chr7.2:85241091-85241110 None:intergenic 25.0%
! AGAATTATGCTTTCATACAT+GGG - chr7.2:85241090-85241109 None:intergenic 25.0%
! ATAAGAATAAGCTTTCCATT+TGG - chr7.2:85242784-85242803 None:intergenic 25.0%
! ATTCTCTTTATCATTGGTAT+AGG - chr7.2:85240585-85240604 None:intergenic 25.0%
! CTCACAAAAATAATAGTTCA+AGG - chr7.2:85241173-85241192 None:intergenic 25.0%
! CTTATAAAATTTCATGGAGT+AGG - chr7.2:85241505-85241524 None:intergenic 25.0%
! GGATAAAAAAAACTAAGTTG+TGG + chr7.2:85242344-85242363 MS.gene057544:intron 25.0%
! GTATTCTAGCAAATATCATT+AGG - chr7.2:85242430-85242449 None:intergenic 25.0%
! TAAATTGACTACATCAATCA+AGG - chr7.2:85241043-85241062 None:intergenic 25.0%
! TAATATTAGGTTTCTGCTAT+CGG - chr7.2:85241315-85241334 None:intergenic 25.0%
! TATCATTGTCATCTATTTGT+GGG - chr7.2:85240628-85240647 None:intergenic 25.0%
! TGAAAATGGTGATTCTTATT+TGG + chr7.2:85240949-85240968 MS.gene057544:CDS 25.0%
! TTCAATGCCTAAATGAAATT+TGG - chr7.2:85242178-85242197 None:intergenic 25.0%
! TTGACAAAATATTTACCAGA+TGG - chr7.2:85240926-85240945 None:intergenic 25.0%
!! AATACTTTAAGAAAGATCCA+CGG + chr7.2:85241859-85241878 MS.gene057544:CDS 25.0%
!! GAAAATGGTGATTCTTATTT+GGG + chr7.2:85240950-85240969 MS.gene057544:CDS 25.0%
!! TATTTTCAATTACTTGTGGA+AGG - chr7.2:85242064-85242083 None:intergenic 25.0%
!!! CACCCTCTAATTTTTTAAAA+AGG + chr7.2:85242449-85242468 MS.gene057544:intron 25.0%
!!! TAACTTTGAAGCAATTTCAA+AGG - chr7.2:85240774-85240793 None:intergenic 25.0%
!!! TTCCATGAACTTTTTTAAAC+AGG - chr7.2:85241827-85241846 None:intergenic 25.0%
AAGCAATTATTGATCCAGAA+GGG + chr7.2:85241799-85241818 MS.gene057544:CDS 30.0%
AAGGAAAGTTCACATAATGA+TGG + chr7.2:85240737-85240756 MS.gene057544:CDS 30.0%
AATATTAGGTTTCTGCTATC+GGG - chr7.2:85241314-85241333 None:intergenic 30.0%
AGAATCCTTGAAAAATACCA+AGG + chr7.2:85241936-85241955 MS.gene057544:CDS 30.0%
AGCAGAAACCTAATATTAGA+TGG + chr7.2:85241317-85241336 MS.gene057544:intron 30.0%
ATCATTGTCATCTATTTGTG+GGG - chr7.2:85240627-85240646 None:intergenic 30.0%
ATTTGAGGGAATATCAACTT+TGG + chr7.2:85241959-85241978 MS.gene057544:CDS 30.0%
CAAGTTATAACTAAATCGTG+TGG + chr7.2:85242323-85242342 MS.gene057544:intron 30.0%
CACATGATTCTCTTTATCAT+TGG - chr7.2:85240591-85240610 None:intergenic 30.0%
CTCTAAATACCCATCAATAA+AGG + chr7.2:85242025-85242044 MS.gene057544:CDS 30.0%
GAAAAATACCAAGGATTTGA+GGG + chr7.2:85241945-85241964 MS.gene057544:CDS 30.0%
GAATTCAAGGCTAAAAAACA+AGG - chr7.2:85241677-85241696 None:intergenic 30.0%
GACCTGTTTAAAAAAGTTCA+TGG + chr7.2:85241822-85241841 MS.gene057544:CDS 30.0%
GTATCATTGTCATCTATTTG+TGG - chr7.2:85240629-85240648 None:intergenic 30.0%
TATATCAACAAGCTATTAGC+AGG - chr7.2:85241737-85241756 None:intergenic 30.0%
TGAAAAATACCAAGGATTTG+AGG + chr7.2:85241944-85241963 MS.gene057544:CDS 30.0%
! ATATCAACTTTGGTTGATGT+AGG + chr7.2:85241969-85241988 MS.gene057544:CDS 30.0%
! CAAATCCTTGGTATTTTTCA+AGG - chr7.2:85241944-85241963 None:intergenic 30.0%
! GGTGTATTTTCAATTACTTG+TGG - chr7.2:85242068-85242087 None:intergenic 30.0%
! TATCAACTTTGGTTGATGTA+GGG + chr7.2:85241970-85241989 MS.gene057544:CDS 30.0%
!! CATTTAGGCATTGAATATGT+TGG + chr7.2:85242183-85242202 MS.gene057544:intron 30.0%
!!! AAGTTTTGAATTCAACAGAC+AGG + chr7.2:85241542-85241561 MS.gene057544:intron 30.0%
AACATGTCGTCAAGAATTCA+AGG - chr7.2:85241690-85241709 None:intergenic 35.0%
AACCAACAGATGTATCTAGA+TGG + chr7.2:85242830-85242849 MS.gene057544:CDS 35.0%
AAGGCTAAAAAACAAGGTCA+TGG - chr7.2:85241671-85241690 None:intergenic 35.0%
AGAATAAGCTTTCCATTTGG+AGG - chr7.2:85242781-85242800 None:intergenic 35.0%
AGCAATTATTGATCCAGAAG+GGG + chr7.2:85241800-85241819 MS.gene057544:CDS 35.0%
AGGAGATGTCATAATGATCA+AGG + chr7.2:85242233-85242252 MS.gene057544:CDS 35.0%
ATCAAGGTATGTGTGTGTAT+GGG + chr7.2:85242249-85242268 MS.gene057544:intron 35.0%
ATCATTATGACATCTCCTTG+TGG - chr7.2:85242231-85242250 None:intergenic 35.0%
CCTAATATTAGATGGTCCAA+CGG + chr7.2:85241325-85241344 MS.gene057544:intron 35.0%
GAAGCAATTATTGATCCAGA+AGG + chr7.2:85241798-85241817 MS.gene057544:CDS 35.0%
GTAGCATAGTGAGAGTTTAT+GGG + chr7.2:85240894-85240913 MS.gene057544:CDS 35.0%
GTGAAGGAATATGAGAGTTT+GGG + chr7.2:85242907-85242926 MS.gene057544:CDS 35.0%
TAGCCGCTAAGTTTGAATAT+GGG + chr7.2:85241608-85241627 MS.gene057544:intron 35.0%
TCACCCATATTCAAACTTAG+CGG - chr7.2:85241614-85241633 None:intergenic 35.0%
TGTCTTGCTTTCTCTATCAT+TGG + chr7.2:85242964-85242983 MS.gene057544:CDS 35.0%
TGTGAAGGAATATGAGAGTT+TGG + chr7.2:85242906-85242925 MS.gene057544:CDS 35.0%
TTGATATTCCCTCAAATCCT+TGG - chr7.2:85241956-85241975 None:intergenic 35.0%
TTTCTCTATCATTGGAGTCA+TGG + chr7.2:85242972-85242991 MS.gene057544:CDS 35.0%
TTTGTTAAAGAGTCTCGCAT+CGG - chr7.2:85241450-85241469 None:intergenic 35.0%
! ACTTTTCATCCGACCAATTA+TGG - chr7.2:85242723-85242742 None:intergenic 35.0%
! ATCAACTTTGGTTGATGTAG+GGG + chr7.2:85241971-85241990 MS.gene057544:CDS 35.0%
!! ATGTTTGAAAGTGTTCCACA+AGG + chr7.2:85242213-85242232 MS.gene057544:CDS 35.0%
!! CCAACGGATTTTAGAAATCA+TGG + chr7.2:85241341-85241360 MS.gene057544:intron 35.0%
!! CCATGATTTCTAAAATCCGT+TGG - chr7.2:85241344-85241363 None:intergenic 35.0%
!! TTAGGCATTGAATATGTTGG+AGG + chr7.2:85242186-85242205 MS.gene057544:intron 35.0%
AACATACGATCGAGCCTATT+CGG - chr7.2:85240818-85240837 None:intergenic 40.0%
AACATGATGTTTGTCACAGC+TGG + chr7.2:85242868-85242887 MS.gene057544:CDS 40.0%
AGCCATCTAGATACATCTGT+TGG - chr7.2:85242835-85242854 None:intergenic 40.0%
CAATGATACACTCTCTGCTA+TGG + chr7.2:85240640-85240659 MS.gene057544:CDS 40.0%
CACTATGCTACCATCATCAT+TGG - chr7.2:85240885-85240904 None:intergenic 40.0%
CCGTTGGACCATCTAATATT+AGG - chr7.2:85241328-85241347 None:intergenic 40.0%
CTCGGACATGAGTTTATAAG+TGG - chr7.2:85241416-85241435 None:intergenic 40.0%
GATCAAGGTATGTGTGTGTA+TGG + chr7.2:85242248-85242267 MS.gene057544:intron 40.0%
GGACATGAGTTTATAAGTGG+AGG - chr7.2:85241413-85241432 None:intergenic 40.0%
GGTAGCATAGTGAGAGTTTA+TGG + chr7.2:85240893-85240912 MS.gene057544:CDS 40.0%
GTAGCCGCTAAGTTTGAATA+TGG + chr7.2:85241607-85241626 MS.gene057544:intron 40.0%
TACAAAGCTTTGCCTCCAAA+TGG + chr7.2:85242766-85242785 MS.gene057544:CDS 40.0%
TATAGGCTGTCAGCCATAAT+TGG + chr7.2:85242707-85242726 MS.gene057544:intron 40.0%
! AACACTCTGATTTGCCGAAT+AGG + chr7.2:85240801-85240820 MS.gene057544:CDS 40.0%
! TCAACTTTGGTTGATGTAGG+GGG + chr7.2:85241972-85241991 MS.gene057544:CDS 40.0%
! TCTAGATCTTCTGGTTGCAA+GGG - chr7.2:85242811-85242830 None:intergenic 40.0%
! TGGAATGGAAAGAAGTGTGA+AGG + chr7.2:85242891-85242910 MS.gene057544:CDS 40.0%
! TTCTAGATCTTCTGGTTGCA+AGG - chr7.2:85242812-85242831 None:intergenic 40.0%
! TTTTTAAACAGGTCCCCTTC+TGG - chr7.2:85241816-85241835 None:intergenic 40.0%
!! AGAAATGGATTACCTGGACA+AGG - chr7.2:85242092-85242111 None:intergenic 40.0%
!! CACATGAGAAATGGATTACC+TGG - chr7.2:85242098-85242117 None:intergenic 40.0%
!! CTCTTCTGTCTGTTTCTACT+CGG + chr7.2:85240858-85240877 MS.gene057544:CDS 40.0%
!! TATGGTACTTGGTGCCAATA+TGG + chr7.2:85240658-85240677 MS.gene057544:CDS 40.0%
!! TCTGTTGGTTCTAGATCTTC+TGG - chr7.2:85242820-85242839 None:intergenic 40.0%
AACCGCAGGAAACACCATAT+TGG - chr7.2:85240675-85240694 None:intergenic 45.0%
ACACTCTCTGCTATGGTACT+TGG + chr7.2:85240647-85240666 MS.gene057544:CDS 45.0%
ACCACACCATTGACAAAGCA+GGG - chr7.2:85241000-85241019 None:intergenic 45.0%
ATGATGTTTGTCACAGCTGG+TGG + chr7.2:85242871-85242890 MS.gene057544:CDS 45.0%
GAAAATACACCACCTTGTCC+AGG + chr7.2:85242077-85242096 MS.gene057544:CDS 45.0%
GAGAGTTTGGGAAAACGATC+TGG + chr7.2:85242919-85242938 MS.gene057544:CDS 45.0%
GTAATCCTCACCTCACAAGT+CGG - chr7.2:85241391-85241410 None:intergenic 45.0%
GTTTATGGGATCACACCATC+TGG + chr7.2:85240908-85240927 MS.gene057544:CDS 45.0%
TACCACACCATTGACAAAGC+AGG - chr7.2:85241001-85241020 None:intergenic 45.0%
TCTACTCGGACCAATGATGA+TGG + chr7.2:85240872-85240891 MS.gene057544:CDS 45.0%
TGCCAATATGGTGTTTCCTG+CGG + chr7.2:85240670-85240689 MS.gene057544:CDS 45.0%
!! AATGGATTACCTGGACAAGG+TGG - chr7.2:85242089-85242108 None:intergenic 45.0%
!! GGCAAATCAGAGTGTTGAGT+TGG - chr7.2:85240797-85240816 None:intergenic 45.0%
ACCCTGCTTTGTCAATGGTG+TGG + chr7.2:85240996-85241015 MS.gene057544:CDS 50.0%
ATTGCAGCGTTAAGAACCGC+AGG - chr7.2:85240689-85240708 None:intergenic 50.0%
GCATCGGATCAAAGATGGCT+CGG - chr7.2:85241434-85241453 None:intergenic 50.0%
GGCTGTCAGCCATAATTGGT+CGG + chr7.2:85242711-85242730 MS.gene057544:intron 50.0%
GTCTCACCCTGCTTTGTCAA+TGG + chr7.2:85240991-85241010 MS.gene057544:CDS 50.0%
GTCTCGCATCGGATCAAAGA+TGG - chr7.2:85241439-85241458 None:intergenic 50.0%
GTTTGTCACAGCTGGTGGAA+TGG + chr7.2:85242876-85242895 MS.gene057544:CDS 50.0%
! ACCTCACAAGTCGGTTTCGT+GGG - chr7.2:85241382-85241401 None:intergenic 50.0%
! ACTTTGGTTGATGTAGGGGG+TGG + chr7.2:85241975-85241994 MS.gene057544:CDS 50.0%
GTTGATGTAGGGGGTGGAAC+TGG + chr7.2:85241981-85242000 MS.gene057544:CDS 55.0%
! CACCTCACAAGTCGGTTTCG+TGG - chr7.2:85241383-85241402 None:intergenic 55.0%
! CCTCACAAGTCGGTTTCGTG+GGG - chr7.2:85241381-85241400 None:intergenic 55.0%
!! CGAAACCGACTTGTGAGGTG+AGG + chr7.2:85241383-85241402 MS.gene057544:intron 55.0%
!! CCCCACGAAACCGACTTGTG+AGG + chr7.2:85241378-85241397 MS.gene057544:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 85240578 85243008 85240578 ID=MS.gene057544
chr7.2 mRNA 85240578 85243008 85240578 ID=MS.gene057544.t1;Parent=MS.gene057544
chr7.2 exon 85240578 85241017 85240578 ID=MS.gene057544.t1.exon1;Parent=MS.gene057544.t1
chr7.2 CDS 85240578 85241017 85240578 ID=cds.MS.gene057544.t1;Parent=MS.gene057544.t1
chr7.2 exon 85241785 85242098 85241785 ID=MS.gene057544.t1.exon2;Parent=MS.gene057544.t1
chr7.2 CDS 85241785 85242098 85241785 ID=cds.MS.gene057544.t1;Parent=MS.gene057544.t1
chr7.2 exon 85242190 85242254 85242190 ID=MS.gene057544.t1.exon3;Parent=MS.gene057544.t1
chr7.2 CDS 85242190 85242254 85242190 ID=cds.MS.gene057544.t1;Parent=MS.gene057544.t1
chr7.2 exon 85242712 85243008 85242712 ID=MS.gene057544.t1.exon4;Parent=MS.gene057544.t1
chr7.2 CDS 85242712 85243008 85242712 ID=cds.MS.gene057544.t1;Parent=MS.gene057544.t1
Gene Sequence

>MS.gene057544

ATGTCCTATACCAATGATAAAGAGAATCATGTGTTGAAATCTCACACCCCACAAATAGATGACAATGATACACTCTCTGCTATGGTACTTGGTGCCAATATGGTGTTTCCTGCGGTTCTTAACGCTGCAATTGAACTCAATTTATTTGATATCATTGCTAAGGAAAGTTCACATAATGATGGATTCATGTCATCCTTTGAAATTGCTTCAAAGTTACCAACTCAACACTCTGATTTGCCGAATAGGCTCGATCGTATGTTTCGATTGCTTGCAAGCTACTCTCTTCTGTCTGTTTCTACTCGGACCAATGATGATGGTAGCATAGTGAGAGTTTATGGGATCACACCATCTGGTAAATATTTTGTCAAGTATGAAAATGGTGATTCTTATTTGGGCTCATTCACATCATTTTTGTCTCACCCTGCTTTGTCAATGGTGTGGTAAGTATTTCTAATTTCTATACCTTGATTGATGTAGTCAATTTACGATATATAGTAGTTAATAATAAGCCCATGTATGAAAGCATAATTCTTCAAAACAAAAAGAAAAAAAGATACAGCTCATGTAAGAAATCTTTAAAAAATAATTCTGACCTTGAACTATTATTTTTGTGAGAAATATTTAAAAAAATTGAATATTTGTAGGTATGTTATAGATATAATGAGAAATATTTACTTATTTAAATACTGGCGACATAAATCTCTTAGAAATCGTGAATATAAATTGTAGGTGACCCGATAGCAGAAACCTAATATTAGATGGTCCAACGGATTTTAGAAATCATGGTTGTTCTAACACAACCCCACGAAACCGACTTGTGAGGTGAGGATTACCTCCACTTATAAACTCATGTCCGAGCCATCTTTGATCCGATGCGAGACTCTTTAACAAAATCATTACAATGGAGTGTCAAATAATTTGTGACCTACTCCATGAAATTTTATAAGTTTGATATGCTTTATAAAAGTTTTGAATTCAACAGACAGGATGATTATTTTGTATATATCTCACCTAATGATATTAGTTATTGTAGCCGCTAAGTTTGAATATGGGTGATTTGATCCCATAATTTATTATACACAACATGACACCATGACCTTGTTTTTTAGCCTTGAATTCTTGACGACATGTTTTTCTTTTAAAGAAAAAAATATTACCTGCTAATAGCTTGTTGATATATGTAAACAAATATTTTTATAATGTGTAGGTTGAATTTTAAAGAAGCAATTATTGATCCAGAAGGGGACCTGTTTAAAAAAGTTCATGGAATAACAATGTTTGAATACTTTAAGAAAGATCCACGGATAAATGAAATATTTAACAAATCAATGACGGATACATGCACAACTCACATGAAAAGAATCCTTGAAAAATACCAAGGATTTGAGGGAATATCAACTTTGGTTGATGTAGGGGGTGGAACTGGACAAAGTCTCAAAATGATTATCTCTAAATACCCATCAATAAAGGCAATTAATTTTGACCTTCCACAAGTAATTGAAAATACACCACCTTGTCCAGGTAATCCATTTCTCATGTGATAATTTTTGTATATACAATAACCAGTTTAATTTACAATATTATTAATTGAAAATTTCCAAATTTCATTTAGGCATTGAATATGTTGGAGGAAATATGTTTGAAAGTGTTCCACAAGGAGATGTCATAATGATCAAGGTATGTGTGTGTATGGGATTTGCTGATCTATACCCACTAGTTTTAGTTTTTACATATAAGTGTTTTAGCAAGTTATAACTAAATCGTGTGGATAAAAAAAACTAAGTTGTGGTTAAATACAGTGTGCGTTGTTAAAACATTCTAAAAAATAAATAGGTGTAATCTAACAGCTCCTAATGATATTTGCTAGAATACACCCTCTAATTTTTTAAAAAGGAAAATGTTAAGTGATACCTAAAAATTTGTTATATATATGTCATTAGATATATGTTGCTAAAATACTCATTTATTAAAACTAATATGGATGTATTAATTCTTAGGTTATTAATTTATGATTTTTTTAAAACAAAAAGACCAAAAATTAAAAACTGAAGAATTTGTGATTATATCATTGATTATCTATATGATAGTTCTTAACAATATTTTTGTATCCTTGGATTATATTTTATTGCTATAGGCTGTCAGCCATAATTGGTCGGATGAAAAGTGCATAAAAATGTTTAGCAATTGTTACAAAGCTTTGCCTCCAAATGGAAAGCTTATTCTTATAGAGCCCTTGCAACCAGAAGATCTAGAACCAACAGATGTATCTAGATGGCTTTCAATTGCTGATAACATGATGTTTGTCACAGCTGGTGGAATGGAAAGAAGTGTGAAGGAATATGAGAGTTTGGGAAAACGATCTGGATTTTCTAAGATTCAAGTTGTTTGTCTTGCTTTCTCTATCATTGGAGTCATGGAACTTTACAAATAA

Protein sequence

>MS.gene057544.t1

MSYTNDKENHVLKSHTPQIDDNDTLSAMVLGANMVFPAVLNAAIELNLFDIIAKESSHNDGFMSSFEIASKLPTQHSDLPNRLDRMFRLLASYSLLSVSTRTNDDGSIVRVYGITPSGKYFVKYENGDSYLGSFTSFLSHPALSMVWLNFKEAIIDPEGDLFKKVHGITMFEYFKKDPRINEIFNKSMTDTCTTHMKRILEKYQGFEGISTLVDVGGGTGQSLKMIISKYPSIKAINFDLPQVIENTPPCPGIEYVGGNMFESVPQGDVIMIKAVSHNWSDEKCIKMFSNCYKALPPNGKLILIEPLQPEDLEPTDVSRWLSIADNMMFVTAGGMERSVKEYESLGKRSGFSKIQVVCLAFSIIGVMELYK