AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49989

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49989.t1 MTR_1g105605 98.391 746 8 1 1 742 1 746 0.0 1517
MS.gene49989.t1 MTR_3g084740 44.503 764 392 13 7 741 10 770 0.0 652
MS.gene49989.t1 MTR_8g011270 43.320 771 395 11 2 741 4 763 0.0 639
MS.gene49989.t1 MTR_3g084740 42.815 682 360 12 7 661 10 688 0.0 557
MS.gene49989.t1 MTR_6g452530 52.414 145 58 2 523 657 11 154 1.19e-42 152
MS.gene49989.t1 MTR_6g452520 52.414 145 58 2 523 657 11 154 1.51e-42 153
MS.gene49989.t1 MTR_6g452510 52.414 145 58 2 523 657 11 154 1.51e-42 153
MS.gene49989.t1 MTR_3g083830 41.350 237 63 8 226 460 32 194 2.51e-36 136
MS.gene49989.t1 MTR_7g110640 22.096 706 447 23 34 707 164 798 7.88e-21 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49989.t1 AT5G43670 61.104 797 252 8 1 742 1 794 0.0 1005
MS.gene49989.t1 AT3G23660 44.868 760 393 11 5 741 8 764 0.0 667
MS.gene49989.t1 AT3G23660 43.639 786 391 13 5 741 8 790 0.0 654
MS.gene49989.t1 AT1G05520 42.455 782 406 11 1 741 4 782 0.0 636
MS.gene49989.t1 AT4G14160 43.963 762 400 11 4 741 13 771 0.0 631
MS.gene49989.t1 AT4G14160 43.775 763 401 11 4 741 13 772 0.0 630
MS.gene49989.t1 AT2G21630 43.061 771 396 9 2 741 3 761 0.0 603
MS.gene49989.t1 AT4G14160 40.271 591 328 10 4 572 13 600 3.65e-141 428
MS.gene49989.t1 AT4G01810 22.367 693 437 19 51 707 200 827 6.68e-23 105
MS.gene49989.t1 AT4G01810 22.367 693 437 19 51 707 200 827 6.68e-23 105
MS.gene49989.t1 AT4G01810 22.367 693 437 19 51 707 200 827 6.68e-23 105

Find 192 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCCCAGCTCTGCATTTA+TGG 0.146142 1.1:-75618291 MS.gene49989:CDS
TCCTTAGGTGGAACATAAAT+TGG 0.153708 1.1:+75617976 None:intergenic
TTCCTTGTGGTGATCCATTA+TGG 0.166108 1.1:-75617750 MS.gene49989:CDS
ACTAATGATGTCAAAATTTC+TGG 0.170175 1.1:-75618467 MS.gene49989:CDS
CATTTGAATCCGATCAATTT+AGG 0.188915 1.1:-75618574 MS.gene49989:CDS
CTAAACTCACATTCTGAAAT+TGG 0.225580 1.1:+75619004 None:intergenic
CTGATGAAACTGCGTATTTC+CGG 0.234643 1.1:-75617920 MS.gene49989:CDS
CACAATGGATTTCGTTGAAT+TGG 0.235949 1.1:-75620285 None:intergenic
TGTTCCAAAACAGGGATTTC+TGG 0.241058 1.1:-75619029 MS.gene49989:CDS
AGAATCATGGTATTCACTTC+TGG 0.244413 1.1:-75618848 MS.gene49989:CDS
TCCTTGTGGTGATCCATTAT+GGG 0.259198 1.1:-75617749 MS.gene49989:CDS
GGAACCAGAAATCCCTGTTT+TGG 0.272568 1.1:+75619025 None:intergenic
CTTCTTCCACTGAGCAATCT+TGG 0.278201 1.1:+75617725 None:intergenic
TTCTAAAATTCTCATGGTTT+GGG 0.281291 1.1:+75617685 None:intergenic
GGAACATAAATTGGGGATAA+AGG 0.283463 1.1:+75617985 None:intergenic
GTGTAGGTTGAATCATTATA+AGG 0.283660 1.1:+75617865 None:intergenic
TCGATTATCAATCACGTATC+TGG 0.284665 1.1:-75620079 MS.gene49989:CDS
TGTTAGAGACATCAATAAAT+TGG 0.296694 1.1:+75617949 None:intergenic
TTTCTAAAATTCTCATGGTT+TGG 0.298952 1.1:+75617684 None:intergenic
TCTAGATCAATTGCAGATAC+TGG 0.318050 1.1:-75617463 MS.gene49989:CDS
GTCAAAATTTCTGGAGCTCT+TGG 0.335108 1.1:-75618458 MS.gene49989:CDS
AGGGATTGTTAGGTCTGATT+TGG 0.339917 1.1:+75620214 None:intergenic
CTAAATCTTGCAGTTTCTAT+AGG 0.340834 1.1:-75618727 MS.gene49989:CDS
CGGAAGGAAGAAGGATCTTC+TGG 0.343028 1.1:+75618026 None:intergenic
AGGTCTGATTTGGTTGTTGA+TGG 0.354224 1.1:+75620224 None:intergenic
AACTGTTCTGCATCCAGTTC+TGG 0.361114 1.1:+75617648 None:intergenic
GAGCAATCTTGGACCCATAA+TGG 0.371953 1.1:+75617736 None:intergenic
CACATAGTCCCCAAACTTAG+AGG 0.376203 1.1:+75618049 None:intergenic
AACACAGCCTGTTCCAAAAC+AGG 0.376787 1.1:-75619038 MS.gene49989:CDS
TGGTTCGGATATCATCTTTA+CGG 0.381108 1.1:-75617508 MS.gene49989:CDS
TGATGGTTAGAGGGATTGTT+AGG 0.382749 1.1:+75620204 None:intergenic
GTGGCCCATCAAACGAATAT+TGG 0.386146 1.1:+75617838 None:intergenic
GTACCTGATCGGAAGAAAAT+TGG 0.386477 1.1:+75619733 None:intergenic
GTTGAATTGGAGGCAGTAGA+AGG 0.388619 1.1:-75620272 MS.gene49989:CDS
CCTTAGGTGGAACATAAATT+GGG 0.391307 1.1:+75617977 None:intergenic
ACTTCTGGGCCTGCTACTCT+TGG 0.397015 1.1:-75618833 MS.gene49989:CDS
TTTGATTACGTTTGATTCCA+TGG 0.403247 1.1:-75619817 MS.gene49989:CDS
GAATCATGGTATTCACTTCT+GGG 0.404127 1.1:-75618847 MS.gene49989:CDS
AAAGCAACAAGAGCAGTATC+AGG 0.409675 1.1:+75619837 None:intergenic
CGGAAATACGCAGTTTCATC+AGG 0.417657 1.1:+75617921 None:intergenic
TTCATTCTACGTATAACTTC+AGG 0.419580 1.1:-75618958 MS.gene49989:CDS
CTGAACCATAAATGCAGAGC+TGG 0.420001 1.1:+75618286 None:intergenic
GAACATAAATTGGGGATAAA+GGG 0.420979 1.1:+75617986 None:intergenic
TTGCAGCTCCAGTGGACCTC+GGG 0.424808 1.1:+75618921 None:intergenic
AGAACAGTTGGTGGCTGAAC+GGG 0.425965 1.1:-75617634 MS.gene49989:CDS
CAATAAATTGGGATCTCCTT+AGG 0.428237 1.1:+75617961 None:intergenic
GCTGTTGGAAGCTCCAGAAC+TGG 0.430961 1.1:-75617661 MS.gene49989:CDS
TGAGCGCTCGGGTGGATTTG+TGG 0.435162 1.1:-75618609 MS.gene49989:CDS
CAAGATAGAATCGGGGCAAA+TGG 0.435352 1.1:+75617788 None:intergenic
ATTAGTAGTCACTATTTCAA+TGG 0.435439 1.1:+75618484 None:intergenic
GGTGTGGACGGCTAATGTTT+AGG 0.443719 1.1:+75619077 None:intergenic
TCCGTTGGTCATGGAATTCA+TGG 0.445862 1.1:-75620247 MS.gene49989:CDS
AAATCCACCCGAGCGCTCAA+TGG 0.446015 1.1:+75618613 None:intergenic
ATGCCCGTGATGTTGTTAGA+TGG 0.450547 1.1:-75618097 MS.gene49989:CDS
AGAAGCAGCAGCTTCGGTTA+TGG 0.452065 1.1:-75618153 MS.gene49989:CDS
AGGGTTACGTTGAGAACAAA+AGG 0.452981 1.1:+75620049 None:intergenic
CGTAACAGATGGATTCAACT+TGG 0.453726 1.1:+75617551 None:intergenic
ATCAAAGAGCAAGATAGAAT+CGG 0.454307 1.1:+75617779 None:intergenic
TTGATCGGATTCAAATGATT+CGG 0.454750 1.1:+75618580 None:intergenic
GTTAGAGACATCAATAAATT+GGG 0.455707 1.1:+75617950 None:intergenic
CGTCCACACCAGCTGCATAC+TGG 0.456155 1.1:-75619064 MS.gene49989:CDS
TGATCAAGAAGCAGCAGCTT+CGG 0.456711 1.1:-75618159 MS.gene49989:CDS
ACGGTACAGGCAGGGGAACA+TGG 0.459727 1.1:-75618255 MS.gene49989:CDS
GCTGCAATTTCAGCTGCCAT+TGG 0.460310 1.1:-75618905 MS.gene49989:CDS
CATTCCACAGATATTGCTGC+TGG 0.461956 1.1:-75618185 MS.gene49989:CDS
TGGTCACATCTTATAACCTT+TGG 0.463433 1.1:+75617603 None:intergenic
TATACATTTCCTAAATTGAT+CGG 0.463943 1.1:+75618565 None:intergenic
CCCCAAACTTAGAGGTAAAA+CGG 0.465443 1.1:+75618057 None:intergenic
TCAAAGAGCAAGATAGAATC+GGG 0.465693 1.1:+75617780 None:intergenic
TGTAGGTTGAATCATTATAA+GGG 0.466734 1.1:+75617866 None:intergenic
GTTTATAACACGGTACAGGC+AGG 0.471778 1.1:-75618264 MS.gene49989:CDS
ACACGTCTCTGCTCGGAGAA+TGG 0.475673 1.1:+75618121 None:intergenic
AATGTCATTGTGGGTTCTCA+TGG 0.475832 1.1:+75618775 None:intergenic
TTCAACATACACAGATGGTT+CGG 0.479217 1.1:-75617523 MS.gene49989:CDS
AATCCACCCGAGCGCTCAAT+GGG 0.481475 1.1:+75618614 None:intergenic
CCCATTGAAAATGTCATTGT+GGG 0.482404 1.1:+75618766 None:intergenic
CCCAATTTATGTTCCACCTA+AGG 0.483319 1.1:-75617977 MS.gene49989:CDS
TGATAATCGAGACGAGCGTA+AGG 0.486726 1.1:+75620092 None:intergenic
TCGAGAACCCATTGAGCGCT+CGG 0.488153 1.1:-75618621 MS.gene49989:CDS
AAATGCAGAGCTGGGCTGAA+TGG 0.489105 1.1:+75618295 None:intergenic
GAAGAAGCTTGGTTATGATA+AGG 0.491651 1.1:-75617709 MS.gene49989:CDS
CTGAACCGCGAAGGAGTAGT+TGG 0.492465 1.1:-75617891 MS.gene49989:CDS
TGGTCTGTTTATCACTAACT+TGG 0.492841 1.1:+75618315 None:intergenic
AATGGATTTCGTTGAATTGG+AGG 0.494230 1.1:-75620282 MS.gene49989:CDS
TCTACGTATAACTTCAGGTC+TGG 0.494651 1.1:-75618953 MS.gene49989:CDS
AGTCCAGGTCCAAGAGTAGC+AGG 0.496349 1.1:+75618824 None:intergenic
GTGCAGAGGAGAGGATCGTA+AGG 0.498794 1.1:+75620137 None:intergenic
GTGTTTGTCCAGTATGCAGC+TGG 0.501667 1.1:+75619056 None:intergenic
CAGCAACTCCAACTTGGTCA+AGG 0.503030 1.1:+75618648 None:intergenic
ACAGCTTTCTAAAATTCTCA+TGG 0.505567 1.1:+75617679 None:intergenic
ATGTGACCAGCATAGTAGTC+AGG 0.507191 1.1:-75617589 MS.gene49989:CDS
CATCTTATAACCTTTGGCAC+TGG 0.507470 1.1:+75617609 None:intergenic
GCTTGCTCCCTTGACCAAGT+TGG 0.508759 1.1:-75618656 MS.gene49989:CDS
AGAGGATCGTAAGGGAGAAG+AGG 0.512714 1.1:+75620146 None:intergenic
TCGGCGATGGAGCGAGGGAA+AGG 0.512946 1.1:+75620029 None:intergenic
TAAGTAGGAAAGAGTTCAGC+GGG 0.512994 1.1:+75619996 None:intergenic
ACCGTGCAAAAGAACAATCC+TGG 0.513092 1.1:+75619761 None:intergenic
CACCACTGCTGCACGACGAT+GGG 0.514134 1.1:-75618216 MS.gene49989:CDS
ATATCTAGAAGTACAGGAAT+GGG 0.517316 1.1:+75617816 None:intergenic
CGAGAACCCATTGAGCGCTC+GGG 0.517565 1.1:-75618620 MS.gene49989:CDS
TCAGAGTCCACAACGAGTCC+AGG 0.518023 1.1:+75618809 None:intergenic
GAACGAATATCTAGAAGTAC+AGG 0.518525 1.1:+75617810 None:intergenic
AATATCTAGAAGTACAGGAA+TGG 0.522926 1.1:+75617815 None:intergenic
GGGCCTGCTACTCTTGGACC+TGG 0.524957 1.1:-75618827 MS.gene49989:CDS
CTTTGATTCGTTCTTCCTTG+TGG 0.525311 1.1:-75617763 MS.gene49989:CDS
CGGCGATGGAGCGAGGGAAA+GGG 0.525845 1.1:+75620030 None:intergenic
GAAGATAAACGGAAGGAAGA+AGG 0.526796 1.1:+75618017 None:intergenic
TAGAAGGCCTCCGTTGGTCA+TGG 0.530254 1.1:-75620256 MS.gene49989:CDS
GAAGCTCAGCAACTCCAACT+TGG 0.535939 1.1:+75618642 None:intergenic
AACCCATCGTCGTGCAGCAG+TGG 0.542579 1.1:+75618214 None:intergenic
ATTGCTCAGTGGAAGAAGCT+TGG 0.543785 1.1:-75617720 MS.gene49989:CDS
AAATGCTGGCTCTAGAATCA+TGG 0.548937 1.1:-75618861 MS.gene49989:CDS
CGGTACAGGCAGGGGAACAT+GGG 0.552230 1.1:-75618254 MS.gene49989:CDS
TATTCAACAGTGGTGTAAGT+AGG 0.553342 1.1:+75619981 None:intergenic
TTCAGTTTATAACACGGTAC+AGG 0.554307 1.1:-75618268 MS.gene49989:CDS
CAGAACAGTTGGTGGCTGAA+CGG 0.558794 1.1:-75617635 MS.gene49989:CDS
TCAGTGCCGCGTTGAGAGAG+TGG 0.559047 1.1:+75620173 None:intergenic
AACGAATATTGGAAAAGTGT+AGG 0.560902 1.1:+75617849 None:intergenic
TCAGTGAGTGAGACCGAGGT+TGG 0.560984 1.1:-75618404 MS.gene49989:CDS
TCTTGGACCTGGACTCGTTG+TGG 0.564738 1.1:-75618816 MS.gene49989:CDS
GAACCCATTGAGCGCTCGGG+TGG 0.564852 1.1:-75618617 MS.gene49989:CDS
ACCTAGCCTGACTACTATGC+TGG 0.565891 1.1:+75617583 None:intergenic
TTATAACACGGTACAGGCAG+GGG 0.567860 1.1:-75618262 MS.gene49989:CDS
GGGATCCAACTACTCCTTCG+CGG 0.568133 1.1:+75617886 None:intergenic
TCACCACTGCTGCACGACGA+TGG 0.569982 1.1:-75618217 MS.gene49989:CDS
AGAACTGGATGCAGAACAGT+TGG 0.570733 1.1:-75617646 MS.gene49989:CDS
TTTAAACATGATGATGATGA+GGG 0.572026 1.1:-75618533 MS.gene49989:CDS
AGCAACTCCAACTTGGTCAA+GGG 0.572830 1.1:+75618649 None:intergenic
GGTGTGCACATGATGGTTAG+AGG 0.573658 1.1:+75620194 None:intergenic
GCCATGAATTCCATGACCAA+CGG 0.578093 1.1:+75620246 None:intergenic
AAAAGCAATGCAAGTTCGGT+CGG 0.578544 1.1:+75618343 None:intergenic
GGGAAGATTAGCGTCGGCGA+TGG 0.578769 1.1:+75620016 None:intergenic
CAGCAGCAATATCTGTGGAA+TGG 0.580313 1.1:+75618186 None:intergenic
CGGCTTATGCTGAACCGCGA+AGG 0.581017 1.1:-75617900 MS.gene49989:CDS
AGCTGAAATTGCAGCTCCAG+TGG 0.583120 1.1:+75618913 None:intergenic
TGAACCATAAATGCAGAGCT+GGG 0.583186 1.1:+75618287 None:intergenic
TAGCGTCGGCGATGGAGCGA+GGG 0.583880 1.1:+75620024 None:intergenic
TTTATAACACGGTACAGGCA+GGG 0.591863 1.1:-75618263 MS.gene49989:CDS
TTAGCGTCGGCGATGGAGCG+AGG 0.595860 1.1:+75620023 None:intergenic
TGAACGGGTTCCAGTGCCAA+AGG 0.596266 1.1:-75617619 MS.gene49989:CDS
AAAATTTGAAGATAAACGGA+AGG 0.596325 1.1:+75618010 None:intergenic
GGGCATGACACGTCTCTGCT+CGG 0.596609 1.1:+75618114 None:intergenic
GCCCATTGAAAATGTCATTG+TGG 0.599300 1.1:+75618765 None:intergenic
ATTGCAGCTCCAGTGGACCT+CGG 0.601250 1.1:+75618920 None:intergenic
CAGTATGCAGCTGGTGTGGA+CGG 0.601268 1.1:+75619065 None:intergenic
GTTTAAACATGATGATGATG+AGG 0.601853 1.1:-75618534 MS.gene49989:CDS
GGTACCACCTTGTCCAACCT+CGG 0.602216 1.1:+75618391 None:intergenic
TAAATTGGGATCTCCTTAGG+TGG 0.605088 1.1:+75617964 None:intergenic
AAGCCATCTAACAACATCAC+GGG 0.606998 1.1:+75618094 None:intergenic
GATCGTAAGGGAGAAGAGGT+AGG 0.607864 1.1:+75620150 None:intergenic
GATAATCGAGACGAGCGTAA+GGG 0.611343 1.1:+75620093 None:intergenic
ATTAATTGGAGGTACCTGAT+CGG 0.612531 1.1:+75619722 None:intergenic
ATTCCACAGATATTGCTGCT+GGG 0.613853 1.1:-75618184 MS.gene49989:CDS
CGGCGCCGCATCGAGTGCAG+AGG 0.614220 1.1:+75620123 None:intergenic
CAAAATTCAACATACACAGA+TGG 0.616886 1.1:-75617528 MS.gene49989:CDS
GACAAGGTGGTACCTGCGTG+TGG 0.618247 1.1:-75618382 MS.gene49989:CDS
AATATCATGAAGATAAACCA+TGG 0.621259 1.1:+75619800 None:intergenic
ACGAGCGTAAGGGTTTAAAA+CGG 0.624354 1.1:+75620103 None:intergenic
ACTGGATGCAGAACAGTTGG+TGG 0.626186 1.1:-75617643 MS.gene49989:CDS
CCGCATCGAGTGCAGAGGAG+AGG 0.628258 1.1:+75620128 None:intergenic
AGTGAGACCGAGGTTGGACA+AGG 0.628463 1.1:-75618398 MS.gene49989:CDS
CGCTTCAGTGAGTGAGACCG+AGG 0.630186 1.1:-75618408 MS.gene49989:CDS
GGGTTACGTTGAGAACAAAA+GGG 0.630742 1.1:+75620050 None:intergenic
TTGCAGATACTGGCAGTGCA+AGG 0.631681 1.1:-75617453 MS.gene49989:CDS
CTTCGCGGTTCAGCATAAGC+CGG 0.634012 1.1:+75617901 None:intergenic
TGCAGCTCCAGTGGACCTCG+GGG 0.636160 1.1:+75618922 None:intergenic
AGGCAGTAGAAGGCCTCCGT+TGG 0.638703 1.1:-75620262 MS.gene49989:CDS
ACAACACTCTAAAAGACCAA+TGG 0.640553 1.1:+75618889 None:intergenic
AGAGAGTGGTGTGCACATGA+TGG 0.640666 1.1:+75620187 None:intergenic
CTTAGGTGGAACATAAATTG+GGG 0.641068 1.1:+75617978 None:intergenic
CAAGCCATCTAACAACATCA+CGG 0.645432 1.1:+75618093 None:intergenic
GTGTGCACATGATGGTTAGA+GGG 0.648276 1.1:+75620195 None:intergenic
TTCAGCGGGAAGATTAGCGT+CGG 0.651769 1.1:+75620010 None:intergenic
TGCAGAGGAGAGGATCGTAA+GGG 0.656194 1.1:+75620138 None:intergenic
AAACCCAGCAGCAATATCTG+TGG 0.656981 1.1:+75618181 None:intergenic
AGAAGAAGAGTATTCAACAG+TGG 0.657516 1.1:+75619971 None:intergenic
TCTAGAAGTACAGGAATGGG+TGG 0.661190 1.1:+75617819 None:intergenic
ACACAGCCTGTTCCAAAACA+GGG 0.661300 1.1:-75619037 MS.gene49989:CDS
ACCAGCATAGTAGTCAGGCT+AGG 0.662465 1.1:-75617584 MS.gene49989:CDS
ATGAATTCCATGACCAACGG+AGG 0.664818 1.1:+75620249 None:intergenic
TGTCCAGTATGCAGCTGGTG+TGG 0.665544 1.1:+75619061 None:intergenic
ACCCATAATGGATCACCACA+AGG 0.667206 1.1:+75617748 None:intergenic
TTATGGTTCAGTTTATAACA+CGG 0.670322 1.1:-75618274 MS.gene49989:CDS
CCTCTCCTCTGCACTCGATG+CGG 0.680345 1.1:-75620128 MS.gene49989:CDS
TGTATTCAACTTCCACACGC+AGG 0.686684 1.1:+75618370 None:intergenic
TCTATAGGCAGATTGCGAAG+AGG 0.694661 1.1:-75618712 MS.gene49989:CDS
GAGACCGAGGTTGGACAAGG+TGG 0.712733 1.1:-75618395 MS.gene49989:CDS
CAAAGAGCAAGATAGAATCG+GGG 0.712881 1.1:+75617781 None:intergenic
GCAGCTCCAGTGGACCTCGG+GGG 0.714974 1.1:+75618923 None:intergenic
GTAAGTAGGAAAGAGTTCAG+CGG 0.716936 1.1:+75619995 None:intergenic
ATGGGTCCAAGATTGCTCAG+TGG 0.775938 1.1:-75617731 MS.gene49989:CDS
TGCACACCACTCTCTCAACG+CGG 0.808428 1.1:-75620179 MS.gene49989:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAATTTTACATTAAATTTG+AGG - chr1.1:75618496-75618515 MS.gene49989:CDS 15.0%
!! TATACATTTCCTAAATTGAT+CGG + chr1.1:75619168-75619187 None:intergenic 20.0%
!! TATGGCTCAAATAAAATAAT+CGG + chr1.1:75618332-75618351 None:intergenic 20.0%
!!! TTTTTTTTTTCTCTCAGATA+CGG - chr1.1:75618625-75618644 MS.gene49989:CDS 20.0%
! AAAATTTGAAGATAAACGGA+AGG + chr1.1:75619723-75619742 None:intergenic 25.0%
! AATATCATGAAGATAAACCA+TGG + chr1.1:75617933-75617952 None:intergenic 25.0%
! ACTAATGATGTCAAAATTTC+TGG - chr1.1:75619263-75619282 MS.gene49989:intron 25.0%
! ATAACAGTGTATGAATGAAA+AGG + chr1.1:75618036-75618055 None:intergenic 25.0%
! ATTAGTAGTCACTATTTCAA+TGG + chr1.1:75619249-75619268 None:intergenic 25.0%
! GGGAAAAATTTGAAGATAAA+CGG + chr1.1:75619727-75619746 None:intergenic 25.0%
! GTTAGAGACATCAATAAATT+GGG + chr1.1:75619783-75619802 None:intergenic 25.0%
! TAGCTTATGAAAACAACTTA+TGG + chr1.1:75618350-75618369 None:intergenic 25.0%
! TGAATGAAAAGGTGATTAAT+TGG + chr1.1:75618025-75618044 None:intergenic 25.0%
! TGTTAGAGACATCAATAAAT+TGG + chr1.1:75619784-75619803 None:intergenic 25.0%
! TTATGGTTCAGTTTATAACA+CGG - chr1.1:75619456-75619475 MS.gene49989:intron 25.0%
!! TGTAGGTTGAATCATTATAA+GGG + chr1.1:75619867-75619886 None:intergenic 25.0%
!! TTTAAACATGATGATGATGA+GGG - chr1.1:75619197-75619216 MS.gene49989:intron 25.0%
!! TTTTCCAATATTCGTTTGAT+GGG - chr1.1:75619888-75619907 MS.gene49989:CDS 25.0%
!!! TTCTAAAATTCTCATGGTTT+GGG + chr1.1:75620048-75620067 None:intergenic 25.0%
!!! TTTCTAAAATTCTCATGGTT+TGG + chr1.1:75620049-75620068 None:intergenic 25.0%
AACAAGCTGAAAACAACTTA+TGG - chr1.1:75618388-75618407 MS.gene49989:CDS 30.0%
AGAAAAAAGCAATGCAAGTT+CGG + chr1.1:75619394-75619413 None:intergenic 30.0%
ATCAAAGAGCAAGATAGAAT+CGG + chr1.1:75619954-75619973 None:intergenic 30.0%
ATGAAAAGGTGATTAATTGG+AGG + chr1.1:75618022-75618041 None:intergenic 30.0%
ATTAATGCAAGATGTTCTCT+AGG - chr1.1:75618102-75618121 MS.gene49989:CDS 30.0%
ATTACAAAAACAAAAGCAGG+AGG + chr1.1:75617803-75617822 None:intergenic 30.0%
CAAAATTCAACATACACAGA+TGG - chr1.1:75620202-75620221 MS.gene49989:CDS 30.0%
CATTTGAATCCGATCAATTT+AGG - chr1.1:75619156-75619175 MS.gene49989:intron 30.0%
CTAAATCTTGCAGTTTCTAT+AGG - chr1.1:75619003-75619022 MS.gene49989:CDS 30.0%
GAACATAAATTGGGGATAAA+GGG + chr1.1:75619747-75619766 None:intergenic 30.0%
GTAATAATCAATCAGTACTC+TGG - chr1.1:75618196-75618215 MS.gene49989:CDS 30.0%
TCGATTACAAAAACAAAAGC+AGG + chr1.1:75617806-75617825 None:intergenic 30.0%
TTCATTCTACGTATAACTTC+AGG - chr1.1:75618772-75618791 MS.gene49989:CDS 30.0%
TTGATCGGATTCAAATGATT+CGG + chr1.1:75619153-75619172 None:intergenic 30.0%
TTTGATTACGTTTGATTCCA+TGG - chr1.1:75617913-75617932 MS.gene49989:CDS 30.0%
! AACGAATATTGGAAAAGTGT+AGG + chr1.1:75619884-75619903 None:intergenic 30.0%
! AATATCTAGAAGTACAGGAA+TGG + chr1.1:75619918-75619937 None:intergenic 30.0%
! ATATCTAGAAGTACAGGAAT+GGG + chr1.1:75619917-75619936 None:intergenic 30.0%
! CTTTTCCAATATTCGTTTGA+TGG - chr1.1:75619887-75619906 MS.gene49989:CDS 30.0%
! GTGTAGGTTGAATCATTATA+AGG + chr1.1:75619868-75619887 None:intergenic 30.0%
! GTTTAAACATGATGATGATG+AGG - chr1.1:75619196-75619215 MS.gene49989:intron 30.0%
!! ACAGCTTTCTAAAATTCTCA+TGG + chr1.1:75620054-75620073 None:intergenic 30.0%
!! CTAAACTCACATTCTGAAAT+TGG + chr1.1:75618729-75618748 None:intergenic 30.0%
!! TGAGAATTTTAGAAAGCTGT+TGG - chr1.1:75620054-75620073 MS.gene49989:CDS 30.0%
!!! TTTTTTCTAAGAGACATGCA+AGG + chr1.1:75619299-75619318 None:intergenic 30.0%
AGAATCATGGTATTCACTTC+TGG - chr1.1:75618882-75618901 MS.gene49989:CDS 35.0%
CAATAAATTGGGATCTCCTT+AGG + chr1.1:75619772-75619791 None:intergenic 35.0%
CCCATTGAAAATGTCATTGT+GGG + chr1.1:75618967-75618986 None:intergenic 35.0%
CCTTAGGTGGAACATAAATT+GGG + chr1.1:75619756-75619775 None:intergenic 35.0%
CTTAGGTGGAACATAAATTG+GGG + chr1.1:75619755-75619774 None:intergenic 35.0%
CTTCACACTTAGACATTGTT+TGG - chr1.1:75618226-75618245 MS.gene49989:CDS 35.0%
GAAGAAGCTTGGTTATGATA+AGG - chr1.1:75620021-75620040 MS.gene49989:CDS 35.0%
GAATCATGGTATTCACTTCT+GGG - chr1.1:75618883-75618902 MS.gene49989:CDS 35.0%
GGAACATAAATTGGGGATAA+AGG + chr1.1:75619748-75619767 None:intergenic 35.0%
TATTCAACAGTGGTGTAAGT+AGG + chr1.1:75617752-75617771 None:intergenic 35.0%
TCAAAGAGCAAGATAGAATC+GGG + chr1.1:75619953-75619972 None:intergenic 35.0%
TCCTTAGGTGGAACATAAAT+TGG + chr1.1:75619757-75619776 None:intergenic 35.0%
TCGATTATCAATCACGTATC+TGG - chr1.1:75617651-75617670 MS.gene49989:CDS 35.0%
TCTAGATCAATTGCAGATAC+TGG - chr1.1:75620267-75620286 MS.gene49989:CDS 35.0%
TCTCAACTAAGTAACTAAGC+TGG + chr1.1:75618527-75618546 None:intergenic 35.0%
TGGTCACATCTTATAACCTT+TGG + chr1.1:75620130-75620149 None:intergenic 35.0%
TGGTCTGTTTATCACTAACT+TGG + chr1.1:75619418-75619437 None:intergenic 35.0%
TTCAACATACACAGATGGTT+CGG - chr1.1:75620207-75620226 MS.gene49989:CDS 35.0%
TTCAGTTTATAACACGGTAC+AGG - chr1.1:75619462-75619481 MS.gene49989:intron 35.0%
! ACAACACTCTAAAAGACCAA+TGG + chr1.1:75618844-75618863 None:intergenic 35.0%
! ACCCACAATGACATTTTCAA+TGG - chr1.1:75618963-75618982 MS.gene49989:CDS 35.0%
! ATCCGTTTTACCTCTAAGTT+TGG - chr1.1:75619671-75619690 MS.gene49989:intron 35.0%
! CCCACAATGACATTTTCAAT+GGG - chr1.1:75618964-75618983 MS.gene49989:CDS 35.0%
! GAACGAATATCTAGAAGTAC+AGG + chr1.1:75619923-75619942 None:intergenic 35.0%
! GTTGAATTTTGCGTAACAGA+TGG + chr1.1:75620193-75620212 None:intergenic 35.0%
! TCCGTTTTACCTCTAAGTTT+GGG - chr1.1:75619672-75619691 MS.gene49989:intron 35.0%
! TGGTTCGGATATCATCTTTA+CGG - chr1.1:75620222-75620241 MS.gene49989:CDS 35.0%
!! AGAAGAAGAGTATTCAACAG+TGG + chr1.1:75617762-75617781 None:intergenic 35.0%
!! ATTAATTGGAGGTACCTGAT+CGG + chr1.1:75618011-75618030 None:intergenic 35.0%
!! GTTGTTTTCATAAGCTATCC+TGG - chr1.1:75618353-75618372 MS.gene49989:CDS 35.0%
!!! GAGTGTTGTTTTGTAAATGC+TGG - chr1.1:75618855-75618874 MS.gene49989:CDS 35.0%
AAAAGCAATGCAAGTTCGGT+CGG + chr1.1:75619390-75619409 None:intergenic 40.0%
AAAGCAACAAGAGCAGTATC+AGG + chr1.1:75617896-75617915 None:intergenic 40.0%
AAGCCATCTAACAACATCAC+GGG + chr1.1:75619639-75619658 None:intergenic 40.0%
AATGTCATTGTGGGTTCTCA+TGG + chr1.1:75618958-75618977 None:intergenic 40.0%
ACGAGCGTAAGGGTTTAAAA+CGG + chr1.1:75617630-75617649 None:intergenic 40.0%
AGGGATTGTTAGGTCTGATT+TGG + chr1.1:75617519-75617538 None:intergenic 40.0%
AGGGTTACGTTGAGAACAAA+AGG + chr1.1:75617684-75617703 None:intergenic 40.0%
ATTCCACAGATATTGCTGCT+GGG - chr1.1:75619546-75619565 MS.gene49989:intron 40.0%
CAAAGAGCAAGATAGAATCG+GGG + chr1.1:75619952-75619971 None:intergenic 40.0%
CAAGCCATCTAACAACATCA+CGG + chr1.1:75619640-75619659 None:intergenic 40.0%
CATCTTATAACCTTTGGCAC+TGG + chr1.1:75620124-75620143 None:intergenic 40.0%
CCCAATTTATGTTCCACCTA+AGG - chr1.1:75619753-75619772 MS.gene49989:CDS 40.0%
CCCCAAACTTAGAGGTAAAA+CGG + chr1.1:75619676-75619695 None:intergenic 40.0%
CCTAACTAACTACCTGTCTA+AGG + chr1.1:75618448-75618467 None:intergenic 40.0%
CCTTAGACAGGTAGTTAGTT+AGG - chr1.1:75618445-75618464 MS.gene49989:CDS 40.0%
CTGATGAAACTGCGTATTTC+CGG - chr1.1:75619810-75619829 MS.gene49989:CDS 40.0%
GAAGATAAACGGAAGGAAGA+AGG + chr1.1:75619716-75619735 None:intergenic 40.0%
GCCCATTGAAAATGTCATTG+TGG + chr1.1:75618968-75618987 None:intergenic 40.0%
GGGTTACGTTGAGAACAAAA+GGG + chr1.1:75617683-75617702 None:intergenic 40.0%
GTAAGTAGGAAAGAGTTCAG+CGG + chr1.1:75617738-75617757 None:intergenic 40.0%
GTACCTGATCGGAAGAAAAT+TGG + chr1.1:75618000-75618019 None:intergenic 40.0%
TAAATTGGGATCTCCTTAGG+TGG + chr1.1:75619769-75619788 None:intergenic 40.0%
TAAGTAGGAAAGAGTTCAGC+GGG + chr1.1:75617737-75617756 None:intergenic 40.0%
TAGACAGGTAGTTAGTTAGG+TGG - chr1.1:75618448-75618467 MS.gene49989:CDS 40.0%
TCCTTGTGGTGATCCATTAT+GGG - chr1.1:75619981-75620000 MS.gene49989:CDS 40.0%
TCTACGTATAACTTCAGGTC+TGG - chr1.1:75618777-75618796 MS.gene49989:CDS 40.0%
TGAACCATAAATGCAGAGCT+GGG + chr1.1:75619446-75619465 None:intergenic 40.0%
TGATGGTTAGAGGGATTGTT+AGG + chr1.1:75617529-75617548 None:intergenic 40.0%
TGTTCCAAAACAGGGATTTC+TGG - chr1.1:75618701-75618720 MS.gene49989:CDS 40.0%
TTCCTTGTGGTGATCCATTA+TGG - chr1.1:75619980-75619999 MS.gene49989:CDS 40.0%
TTTATAACACGGTACAGGCA+GGG - chr1.1:75619467-75619486 MS.gene49989:intron 40.0%
! ACACCAATTTTCTTCCGATC+AGG - chr1.1:75617994-75618013 MS.gene49989:CDS 40.0%
! CAATGACATTTTCAATGGGC+AGG - chr1.1:75618968-75618987 MS.gene49989:CDS 40.0%
! CCGTTTTACCTCTAAGTTTG+GGG - chr1.1:75619673-75619692 MS.gene49989:intron 40.0%
! CGTAACAGATGGATTCAACT+TGG + chr1.1:75620182-75620201 None:intergenic 40.0%
! CTTTGATTCGTTCTTCCTTG+TGG - chr1.1:75619967-75619986 MS.gene49989:CDS 40.0%
! TCCAGGATTGTTCTTTTGCA+CGG - chr1.1:75617968-75617987 MS.gene49989:CDS 40.0%
! TCGTTGTGGACTCTGATTTT+CGG - chr1.1:75618928-75618947 MS.gene49989:CDS 40.0%
! TTCAGTTTTCTCACTGTTCC+AGG - chr1.1:75617951-75617970 MS.gene49989:CDS 40.0%
!! AAATGCTGGCTCTAGAATCA+TGG - chr1.1:75618869-75618888 MS.gene49989:CDS 40.0%
!! AGGTCTGATTTGGTTGTTGA+TGG + chr1.1:75617509-75617528 None:intergenic 40.0%
!! GTCAAAATTTCTGGAGCTCT+TGG - chr1.1:75619272-75619291 MS.gene49989:intron 40.0%
!!! AGAAATCCCTGTTTTGGAAC+AGG + chr1.1:75618702-75618721 None:intergenic 40.0%
AAACCCAGCAGCAATATCTG+TGG + chr1.1:75619552-75619571 None:intergenic 45.0%
AACACAGCCTGTTCCAAAAC+AGG - chr1.1:75618692-75618711 MS.gene49989:CDS 45.0%
AACTACCTGTCTAAGGACGT+AGG + chr1.1:75618441-75618460 None:intergenic 45.0%
AACTGTTCTGCATCCAGTTC+TGG + chr1.1:75620085-75620104 None:intergenic 45.0%
ACACAGCCTGTTCCAAAACA+GGG - chr1.1:75618693-75618712 MS.gene49989:CDS 45.0%
ACCGTGCAAAAGAACAATCC+TGG + chr1.1:75617972-75617991 None:intergenic 45.0%
ACTACCTGTCTAAGGACGTA+GGG + chr1.1:75618440-75618459 None:intergenic 45.0%
AGAACTGGATGCAGAACAGT+TGG - chr1.1:75620084-75620103 MS.gene49989:CDS 45.0%
AGCAACTCCAACTTGGTCAA+GGG + chr1.1:75619084-75619103 None:intergenic 45.0%
ATGAATTCCATGACCAACGG+AGG + chr1.1:75617484-75617503 None:intergenic 45.0%
ATGCCCGTGATGTTGTTAGA+TGG - chr1.1:75619633-75619652 MS.gene49989:intron 45.0%
ATGTGACCAGCATAGTAGTC+AGG - chr1.1:75620141-75620160 MS.gene49989:CDS 45.0%
ATTGCTCAGTGGAAGAAGCT+TGG - chr1.1:75620010-75620029 MS.gene49989:CDS 45.0%
CAAGATAGAATCGGGGCAAA+TGG + chr1.1:75619945-75619964 None:intergenic 45.0%
CACATAGTCCCCAAACTTAG+AGG + chr1.1:75619684-75619703 None:intergenic 45.0%
CAGCAGCAATATCTGTGGAA+TGG + chr1.1:75619547-75619566 None:intergenic 45.0%
CATTCCACAGATATTGCTGC+TGG - chr1.1:75619545-75619564 MS.gene49989:intron 45.0%
CGGAAATACGCAGTTTCATC+AGG + chr1.1:75619812-75619831 None:intergenic 45.0%
CTGAACCATAAATGCAGAGC+TGG + chr1.1:75619447-75619466 None:intergenic 45.0%
CTTCTTCCACTGAGCAATCT+TGG + chr1.1:75620008-75620027 None:intergenic 45.0%
GAGCAATCTTGGACCCATAA+TGG + chr1.1:75619997-75620016 None:intergenic 45.0%
GATAATCGAGACGAGCGTAA+GGG + chr1.1:75617640-75617659 None:intergenic 45.0%
GCCATGAATTCCATGACCAA+CGG + chr1.1:75617487-75617506 None:intergenic 45.0%
GTGGCCCATCAAACGAATAT+TGG + chr1.1:75619895-75619914 None:intergenic 45.0%
GTGTGCACATGATGGTTAGA+GGG + chr1.1:75617538-75617557 None:intergenic 45.0%
GTTGAATTGGAGGCAGTAGA+AGG - chr1.1:75617458-75617477 MS.gene49989:CDS 45.0%
GTTTATAACACGGTACAGGC+AGG - chr1.1:75619466-75619485 MS.gene49989:intron 45.0%
TCCGTTGGTCATGGAATTCA+TGG - chr1.1:75617483-75617502 MS.gene49989:CDS 45.0%
TCTATAGGCAGATTGCGAAG+AGG - chr1.1:75619018-75619037 MS.gene49989:CDS 45.0%
TGATAATCGAGACGAGCGTA+AGG + chr1.1:75617641-75617660 None:intergenic 45.0%
TGATCAAGAAGCAGCAGCTT+CGG - chr1.1:75619571-75619590 MS.gene49989:intron 45.0%
TGTATTCAACTTCCACACGC+AGG + chr1.1:75619363-75619382 None:intergenic 45.0%
TTATAACACGGTACAGGCAG+GGG - chr1.1:75619468-75619487 MS.gene49989:intron 45.0%
! AAGCTATCCTGGAGTGCTTA+CGG - chr1.1:75618364-75618383 MS.gene49989:CDS 45.0%
! GGAACCAGAAATCCCTGTTT+TGG + chr1.1:75618708-75618727 None:intergenic 45.0%
! TCTAGAAGTACAGGAATGGG+TGG + chr1.1:75619914-75619933 None:intergenic 45.0%
!! ACCCATAATGGATCACCACA+AGG + chr1.1:75619985-75620004 None:intergenic 45.0%
AAATGCAGAGCTGGGCTGAA+TGG + chr1.1:75619438-75619457 None:intergenic 50.0%
ACCAGCATAGTAGTCAGGCT+AGG - chr1.1:75620146-75620165 MS.gene49989:CDS 50.0%
ACCTAGCCTGACTACTATGC+TGG + chr1.1:75620150-75620169 None:intergenic 50.0%
ACTGGATGCAGAACAGTTGG+TGG - chr1.1:75620087-75620106 MS.gene49989:CDS 50.0%
AGAAGCAGCAGCTTCGGTTA+TGG - chr1.1:75619577-75619596 MS.gene49989:intron 50.0%
AGAGAGTGGTGTGCACATGA+TGG + chr1.1:75617546-75617565 None:intergenic 50.0%
AGAGGATCGTAAGGGAGAAG+AGG + chr1.1:75617587-75617606 None:intergenic 50.0%
AGCTGAAATTGCAGCTCCAG+TGG + chr1.1:75618820-75618839 None:intergenic 50.0%
ATGGGTCCAAGATTGCTCAG+TGG - chr1.1:75619999-75620018 MS.gene49989:CDS 50.0%
CAGCAACTCCAACTTGGTCA+AGG + chr1.1:75619085-75619104 None:intergenic 50.0%
CGGAAGGAAGAAGGATCTTC+TGG + chr1.1:75619707-75619726 None:intergenic 50.0%
GAAGCTCAGCAACTCCAACT+TGG + chr1.1:75619091-75619110 None:intergenic 50.0%
GATCGTAAGGGAGAAGAGGT+AGG + chr1.1:75617583-75617602 None:intergenic 50.0%
GCTGCAATTTCAGCTGCCAT+TGG - chr1.1:75618825-75618844 MS.gene49989:CDS 50.0%
GGTGTGCACATGATGGTTAG+AGG + chr1.1:75617539-75617558 None:intergenic 50.0%
GGTGTGGACGGCTAATGTTT+AGG + chr1.1:75618656-75618675 None:intergenic 50.0%
GTGTTTGTCCAGTATGCAGC+TGG + chr1.1:75618677-75618696 None:intergenic 50.0%
TCAGCCCAGCTCTGCATTTA+TGG - chr1.1:75619439-75619458 MS.gene49989:intron 50.0%
TGCAGAGGAGAGGATCGTAA+GGG + chr1.1:75617595-75617614 None:intergenic 50.0%
TTCAGCGGGAAGATTAGCGT+CGG + chr1.1:75617723-75617742 None:intergenic 50.0%
TTGCAGATACTGGCAGTGCA+AGG - chr1.1:75620277-75620296 MS.gene49989:CDS 50.0%
!! AGAACAGTTGGTGGCTGAAC+GGG - chr1.1:75620096-75620115 MS.gene49989:CDS 50.0%
!! CAGAACAGTTGGTGGCTGAA+CGG - chr1.1:75620095-75620114 MS.gene49989:CDS 50.0%
AAATCCACCCGAGCGCTCAA+TGG + chr1.1:75619120-75619139 None:intergenic 55.0%
AATCCACCCGAGCGCTCAAT+GGG + chr1.1:75619119-75619138 None:intergenic 55.0%
ACACGTCTCTGCTCGGAGAA+TGG + chr1.1:75619612-75619631 None:intergenic 55.0%
ACTTCTGGGCCTGCTACTCT+TGG - chr1.1:75618897-75618916 MS.gene49989:CDS 55.0%
AGTCCAGGTCCAAGAGTAGC+AGG + chr1.1:75618909-75618928 None:intergenic 55.0%
AGTGAGACCGAGGTTGGACA+AGG - chr1.1:75619332-75619351 MS.gene49989:intron 55.0%
ATTGCAGCTCCAGTGGACCT+CGG + chr1.1:75618813-75618832 None:intergenic 55.0%
CAGTATGCAGCTGGTGTGGA+CGG + chr1.1:75618668-75618687 None:intergenic 55.0%
CTCTCCCTACGTCCTTAGAC+AGG - chr1.1:75618433-75618452 MS.gene49989:CDS 55.0%
CTGAACCGCGAAGGAGTAGT+TGG - chr1.1:75619839-75619858 MS.gene49989:CDS 55.0%
CTTCGCGGTTCAGCATAAGC+CGG + chr1.1:75619832-75619851 None:intergenic 55.0%
CTTGTTGCCGTAAGCACTCC+AGG + chr1.1:75618374-75618393 None:intergenic 55.0%
GCTGTTGGAAGCTCCAGAAC+TGG - chr1.1:75620069-75620088 MS.gene49989:CDS 55.0%
GCTTGCTCCCTTGACCAAGT+TGG - chr1.1:75619074-75619093 MS.gene49989:CDS 55.0%
GGGATCCAACTACTCCTTCG+CGG + chr1.1:75619847-75619866 None:intergenic 55.0%
GGTACCACCTTGTCCAACCT+CGG + chr1.1:75619342-75619361 None:intergenic 55.0%
GTGCAGAGGAGAGGATCGTA+AGG + chr1.1:75617596-75617615 None:intergenic 55.0%
TAGAAGGCCTCCGTTGGTCA+TGG - chr1.1:75617474-75617493 MS.gene49989:CDS 55.0%
TCAGAGTCCACAACGAGTCC+AGG + chr1.1:75618924-75618943 None:intergenic 55.0%
TCAGTGAGTGAGACCGAGGT+TGG - chr1.1:75619326-75619345 MS.gene49989:intron 55.0%
TCGAGAACCCATTGAGCGCT+CGG - chr1.1:75619109-75619128 MS.gene49989:intron 55.0%
TCTTGGACCTGGACTCGTTG+TGG - chr1.1:75618914-75618933 MS.gene49989:CDS 55.0%
TGCACACCACTCTCTCAACG+CGG - chr1.1:75617551-75617570 MS.gene49989:CDS 55.0%
TGTCCAGTATGCAGCTGGTG+TGG + chr1.1:75618672-75618691 None:intergenic 55.0%
! TGAACGGGTTCCAGTGCCAA+AGG - chr1.1:75620111-75620130 MS.gene49989:CDS 55.0%
AACCCATCGTCGTGCAGCAG+TGG + chr1.1:75619519-75619538 None:intergenic 60.0%
ACGGTACAGGCAGGGGAACA+TGG - chr1.1:75619475-75619494 MS.gene49989:intron 60.0%
AGGCAGTAGAAGGCCTCCGT+TGG - chr1.1:75617468-75617487 MS.gene49989:CDS 60.0%
CACCACTGCTGCACGACGAT+GGG - chr1.1:75619514-75619533 MS.gene49989:intron 60.0%
CCTCTCCTCTGCACTCGATG+CGG - chr1.1:75617602-75617621 MS.gene49989:CDS 60.0%
CGAGAACCCATTGAGCGCTC+GGG - chr1.1:75619110-75619129 MS.gene49989:intron 60.0%
CGCTTCAGTGAGTGAGACCG+AGG - chr1.1:75619322-75619341 MS.gene49989:intron 60.0%
CGGCTTATGCTGAACCGCGA+AGG - chr1.1:75619830-75619849 MS.gene49989:CDS 60.0%
CGGTACAGGCAGGGGAACAT+GGG - chr1.1:75619476-75619495 MS.gene49989:intron 60.0%
CGTCCACACCAGCTGCATAC+TGG - chr1.1:75618666-75618685 MS.gene49989:CDS 60.0%
GACAAGGTGGTACCTGCGTG+TGG - chr1.1:75619348-75619367 MS.gene49989:intron 60.0%
GAGACCGAGGTTGGACAAGG+TGG - chr1.1:75619335-75619354 MS.gene49989:intron 60.0%
GGGCATGACACGTCTCTGCT+CGG + chr1.1:75619619-75619638 None:intergenic 60.0%
TCACCACTGCTGCACGACGA+TGG - chr1.1:75619513-75619532 MS.gene49989:intron 60.0%
TCAGTGCCGCGTTGAGAGAG+TGG + chr1.1:75617560-75617579 None:intergenic 60.0%
TTGCAGCTCCAGTGGACCTC+GGG + chr1.1:75618812-75618831 None:intergenic 60.0%
! TGAGCGCTCGGGTGGATTTG+TGG - chr1.1:75619121-75619140 MS.gene49989:intron 60.0%
!! GGGAAGATTAGCGTCGGCGA+TGG + chr1.1:75617717-75617736 None:intergenic 60.0%
CCGCATCGAGTGCAGAGGAG+AGG + chr1.1:75617605-75617624 None:intergenic 65.0%
CGGCGATGGAGCGAGGGAAA+GGG + chr1.1:75617703-75617722 None:intergenic 65.0%
GAACCCATTGAGCGCTCGGG+TGG - chr1.1:75619113-75619132 MS.gene49989:intron 65.0%
GGGCCTGCTACTCTTGGACC+TGG - chr1.1:75618903-75618922 MS.gene49989:CDS 65.0%
TCGGCGATGGAGCGAGGGAA+AGG + chr1.1:75617704-75617723 None:intergenic 65.0%
TGCAGCTCCAGTGGACCTCG+GGG + chr1.1:75618811-75618830 None:intergenic 65.0%
!! TAGCGTCGGCGATGGAGCGA+GGG + chr1.1:75617709-75617728 None:intergenic 65.0%
!! TTAGCGTCGGCGATGGAGCG+AGG + chr1.1:75617710-75617729 None:intergenic 65.0%
CTCCAGTGGACCTCGGGGGA+CGG + chr1.1:75618806-75618825 None:intergenic 70.0%
GCAGCTCCAGTGGACCTCGG+GGG + chr1.1:75618810-75618829 None:intergenic 70.0%
AGCCGTCCCCCGAGGTCCAC+TGG - chr1.1:75618801-75618820 MS.gene49989:CDS 75.0%
CGGCGCCGCATCGAGTGCAG+AGG + chr1.1:75617610-75617629 None:intergenic 75.0%
GGTCTGGAAGCCGTCCCCCG+AGG - chr1.1:75618793-75618812 MS.gene49989:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 75617449 75620303 75617449 ID=MS.gene49989
chr1.1 mRNA 75617449 75620303 75617449 ID=MS.gene49989.t1;Parent=MS.gene49989
chr1.1 exon 75619737 75620303 75619737 ID=MS.gene49989.t1.exon1;Parent=MS.gene49989.t1
chr1.1 CDS 75619737 75620303 75619737 ID=cds.MS.gene49989.t1;Parent=MS.gene49989.t1
chr1.1 exon 75617449 75619110 75617449 ID=MS.gene49989.t1.exon2;Parent=MS.gene49989.t1
chr1.1 CDS 75617449 75619110 75617449 ID=cds.MS.gene49989.t1;Parent=MS.gene49989.t1
Gene Sequence

>MS.gene49989

ATGGATTTCGTTGAATTGGAGGCAGTAGAAGGCCTCCGTTGGTCATGGAATTCATGGCCATCAACAACCAAATCAGACCTAACAATCCCTCTAACCATCATGTGCACACCACTCTCTCAACGCGGCACTGACCTACCTCTTCTCCCTTACGATCCTCTCCTCTGCACTCGATGCGGCGCCGTTTTAAACCCTTACGCTCGTCTCGATTATCAATCACGTATCTGGCACTGTCCCTTTTGTTCTCAACGTAACCCTTTCCCTCGCTCCATCGCCGACGCTAATCTTCCCGCTGAACTCTTTCCTACTTACACCACTGTTGAATACTCTTCTTCTTCTTCTTCACTTTTTCATCCTCCTGCTTTTGTTTTTGTAATCGATGTTTCAACTTCTCAAGATGAGCTTTGTTCACTTAAGAATGAGATTTTACTTCTTCTTCATCATTTGCCTGATACTGCTCTTGTTGCTTTGATTACGTTTGATTCCATGGTTTATCTTCATGATATTCAGTTTTCTCACTGTTCCAGGATTGTTCTTTTGCACGGTGAACACCAATTTTCTTCCGATCAGGTACCTCCAATTAATCACCTTTTCATTCATACACTGTTATATTGTATATGATTATGATTATCATTATGCTTTCTCTCTAATTCAGTATTAATGCAAGATGTTCTCTAGGTTTACATTATTACACTTGAGTGCACTGCAGCTTAGTTTTCTTTTTAACTACATTGCTTTCTTTCTAATTTAGTAATAATCAATCAGTACTCTGGTTAGTAGCTTCACACTTAGACATTGTTTGGATAAACAACTTCATTAAGCGCTTATCATATTTTTTTATATGAGCTATAAGCTATTTCTATAACAAAAGATAAAATGAAGTCCGATTATTTTATTTGAGCCATAAGTTGTTTTCATAAGCTATCCTGGAGTGCTTACGGCAACAAGCTGAAAACAACTTATGGAGTCATAATCTGTCTCTATAAGCTCTCCCTACGTCCTTAGACAGGTAGTTAGTTAGGTGGTTGCTAAATTAATGCAAGATATTTGCTAATTTTACATTAAATTTGAGGACACTCCAGCTTAGTTACTTAGTTGAGAAATTGCTTATTAATGCAATCTGTTGATAGTTTTTACATTATACTTGAGTGCACTACACTGCTTTCTGCTGATTATTTGTTTTTTTTTTCTCTCAGATACGGCAGTTCCTAAACATTAGCCGTCCACACCAGCTGCATACTGGACAAACACAGCCTGTTCCAAAACAGGGATTTCTGGTTCCAATTTCAGAATGTGAGTTTAGTATCACAGCTGCAATTGAAGATATTCATTCTACGTATAACTTCAGGTCTGGAAGCCGTCCCCCGAGGTCCACTGGAGCTGCAATTTCAGCTGCCATTGGTCTTTTAGAGTGTTGTTTTGTAAATGCTGGCTCTAGAATCATGGTATTCACTTCTGGGCCTGCTACTCTTGGACCTGGACTCGTTGTGGACTCTGATTTTCGGCAATCCATGAGAACCCACAATGACATTTTCAATGGGCAGGCGAGACATCATTCTAAATCTTGCAGTTTCTATAGGCAGATTGCGAAGAGGCTGTCTGATGCGTCTGTAGTTCTTGATCTGTTTGCTTGCTCCCTTGACCAAGTTGGAGTTGCTGAGCTTCGAGAACCCATTGAGCGCTCGGGTGGATTTGTGGTTCTTGCCGAATCATTTGAATCCGATCAATTTAGGAAATGTATAAGACACTTGTTTAAACATGATGATGATGAGGGATTTTTGAAGATGAATTTTGATGCAACCATTGAAATAGTGACTACTAATGATGTCAAAATTTCTGGAGCTCTTGGACCTTGCATGTCTCTTAGAAAAAAGAACGCTTCAGTGAGTGAGACCGAGGTTGGACAAGGTGGTACCTGCGTGTGGAAGTTGAATACACTCACCGACCGAACTTGCATTGCTTTTTTCTTCCAAGTTAGTGATAAACAGACCATTCAGCCCAGCTCTGCATTTATGGTTCAGTTTATAACACGGTACAGGCAGGGGAACATGGGTCTCAGAAAAAGAGTCACCACTGCTGCACGACGATGGGTTGCAAACCATTCCACAGATATTGCTGCTGGGTTTGATCAAGAAGCAGCAGCTTCGGTTATGGCAAGACTTGCCATTCTCCGAGCAGAGACGTGTCATGCCCGTGATGTTGTTAGATGGCTTGATGACACACTTATCCGTTTTACCTCTAAGTTTGGGGACTATGTGCCAGAAGATCCTTCTTCCTTCCGTTTATCTTCAAATTTTTCCCTTTATCCCCAATTTATGTTCCACCTAAGGAGATCCCAATTTATTGATGTCTCTAACACTACTCCTGATGAAACTGCGTATTTCCGGCTTATGCTGAACCGCGAAGGAGTAGTTGGATCCCTTATAATGATTCAACCTACACTTTTCCAATATTCGTTTGATGGGCCACCCATTCCTGTACTTCTAGATATTCGTTCCATTTGCCCCGATTCTATCTTGCTCTTTGATTCGTTCTTCCTTGTGGTGATCCATTATGGGTCCAAGATTGCTCAGTGGAAGAAGCTTGGTTATGATAAGGACCCAAACCATGAGAATTTTAGAAAGCTGTTGGAAGCTCCAGAACTGGATGCAGAACAGTTGGTGGCTGAACGGGTTCCAGTGCCAAAGGTTATAAGATGTGACCAGCATAGTAGTCAGGCTAGGTTTCTTCTTGCCAAGTTGAATCCATCTGTTACGCAAAATTCAACATACACAGATGGTTCGGATATCATCTTTACGGATGACTTGAGCTTGCAAGTTTTTCTAGATCAATTGCAGATACTGGCAGTGCAAGGCTGA
Protein sequence

>MS.gene49989.t1

MDFVELEAVEGLRWSWNSWPSTTKSDLTIPLTIMCTPLSQRGTDLPLLPYDPLLCTRCGAVLNPYARLDYQSRIWHCPFCSQRNPFPRSIADANLPAELFPTYTTVEYSSSSSSLFHPPAFVFVIDVSTSQDELCSLKNEILLLLHHLPDTALVALITFDSMVYLHDIQFSHCSRIVLLHGEHQFSSDQIRQFLNISRPHQLHTGQTQPVPKQGFLVPISECEFSITAAIEDIHSTYNFRSGSRPPRSTGAAISAAIGLLECCFVNAGSRIMVFTSGPATLGPGLVVDSDFRQSMRTHNDIFNGQARHHSKSCSFYRQIAKRLSDASVVLDLFACSLDQVGVAELREPIERSGGFVVLAESFESDQFRKCIRHLFKHDDDEGFLKMNFDATIEIVTTNDVKISGALGPCMSLRKKNASVSETEVGQGGTCVWKLNTLTDRTCIAFFFQVSDKQTIQPSSAFMVQFITRYRQGNMGLRKRVTTAARRWVANHSTDIAAGFDQEAAASVMARLAILRAETCHARDVVRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMFHLRRSQFIDVSNTTPDETAYFRLMLNREGVVGSLIMIQPTLFQYSFDGPPIPVLLDIRSICPDSILLFDSFFLVVIHYGSKIAQWKKLGYDKDPNHENFRKLLEAPELDAEQLVAERVPVPKVIRCDQHSSQARFLLAKLNPSVTQNSTYTDGSDIIFTDDLSLQVFLDQLQILAVQG