Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50081.t1 | XP_013442633.1 | 97.1 | 210 | 6 | 0 | 45 | 254 | 65 | 274 | 5.80E-110 | 407.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50081.t1 | Q8H0W3 | 58.1 | 215 | 82 | 3 | 45 | 254 | 87 | 298 | 4.4e-58 | 226.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50081.t1 | D2CGQ1 | 97.1 | 210 | 6 | 0 | 45 | 254 | 65 | 274 | 4.2e-110 | 407.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050680 | MS.gene50081 | 0.82316 | 1.61E-53 | -1.69E-46 |
| MS.gene051368 | MS.gene50081 | 0.825562 | 4.38E-54 | -1.69E-46 |
| MS.gene052333 | MS.gene50081 | 0.801014 | 1.10E-48 | -1.69E-46 |
| MS.gene053166 | MS.gene50081 | 0.808063 | 3.72E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene50081 | 0.806677 | 7.32E-50 | -1.69E-46 |
| MS.gene057156 | MS.gene50081 | -0.81527 | 1.01E-51 | -1.69E-46 |
| MS.gene059161 | MS.gene50081 | 0.820705 | 5.95E-53 | -1.69E-46 |
| MS.gene060011 | MS.gene50081 | 0.83036 | 3.07E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene50081 | 0.801831 | 7.48E-49 | -1.69E-46 |
| MS.gene060918 | MS.gene50081 | 0.802736 | 4.87E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50081.t1 | MTR_0123s0070 | 97.143 | 210 | 6 | 0 | 45 | 254 | 65 | 274 | 4.17e-151 | 422 |
| MS.gene50081.t1 | MTR_0123s0070 | 97.143 | 210 | 6 | 0 | 45 | 254 | 65 | 274 | 5.26e-151 | 423 |
| MS.gene50081.t1 | MTR_8g028655 | 57.273 | 220 | 84 | 3 | 45 | 254 | 79 | 298 | 1.73e-76 | 235 |
| MS.gene50081.t1 | MTR_1g067000 | 52.336 | 214 | 92 | 4 | 42 | 252 | 59 | 265 | 6.33e-63 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50081.t1 | AT5G52660 | 61.395 | 215 | 75 | 3 | 45 | 254 | 87 | 298 | 2.06e-81 | 248 |
| MS.gene50081.t1 | AT5G52660 | 61.682 | 214 | 75 | 3 | 45 | 254 | 87 | 297 | 5.54e-81 | 246 |
| MS.gene50081.t1 | AT4G01280 | 55.708 | 219 | 79 | 5 | 48 | 254 | 77 | 289 | 1.58e-72 | 224 |
| MS.gene50081.t1 | AT4G01280 | 55.455 | 220 | 79 | 5 | 48 | 254 | 77 | 290 | 1.78e-72 | 224 |
| MS.gene50081.t1 | AT1G01520 | 52.093 | 215 | 89 | 3 | 42 | 253 | 73 | 276 | 5.35e-67 | 209 |
| MS.gene50081.t1 | AT1G01520 | 52.093 | 215 | 89 | 3 | 42 | 253 | 73 | 276 | 5.47e-67 | 209 |
| MS.gene50081.t1 | AT3G09600 | 52.153 | 209 | 95 | 2 | 47 | 252 | 4 | 210 | 7.73e-64 | 199 |
| MS.gene50081.t1 | AT3G09600 | 52.153 | 209 | 95 | 2 | 47 | 252 | 4 | 210 | 7.73e-64 | 199 |
| MS.gene50081.t1 | AT3G09600 | 52.153 | 209 | 95 | 2 | 47 | 252 | 4 | 210 | 8.78e-64 | 199 |
| MS.gene50081.t1 | AT3G09600 | 52.153 | 209 | 95 | 2 | 47 | 252 | 4 | 210 | 8.78e-64 | 199 |
| MS.gene50081.t1 | AT3G09600 | 51.659 | 211 | 97 | 2 | 45 | 252 | 58 | 266 | 3.75e-62 | 196 |
| MS.gene50081.t1 | AT3G09600 | 51.659 | 211 | 97 | 2 | 45 | 252 | 58 | 266 | 6.10e-62 | 196 |
| MS.gene50081.t1 | AT3G09600 | 51.659 | 211 | 97 | 2 | 45 | 252 | 58 | 266 | 6.10e-62 | 196 |
| MS.gene50081.t1 | AT3G09600 | 51.659 | 211 | 97 | 2 | 45 | 252 | 58 | 266 | 6.43e-62 | 197 |
| MS.gene50081.t1 | AT3G09600 | 51.659 | 211 | 97 | 2 | 45 | 252 | 58 | 266 | 6.43e-62 | 197 |
| MS.gene50081.t1 | AT5G02840 | 49.774 | 221 | 96 | 4 | 42 | 252 | 60 | 275 | 3.02e-61 | 194 |
| MS.gene50081.t1 | AT5G02840 | 49.774 | 221 | 96 | 4 | 42 | 252 | 60 | 275 | 3.43e-61 | 194 |
| MS.gene50081.t1 | AT5G02840 | 49.774 | 221 | 96 | 4 | 42 | 252 | 60 | 275 | 3.43e-61 | 194 |
| MS.gene50081.t1 | AT1G01520 | 50.254 | 197 | 84 | 3 | 42 | 235 | 73 | 258 | 7.06e-56 | 180 |
| MS.gene50081.t1 | AT1G01520 | 50.254 | 197 | 84 | 3 | 42 | 235 | 73 | 258 | 7.06e-56 | 180 |
| MS.gene50081.t1 | AT5G02840 | 47.549 | 204 | 92 | 4 | 42 | 235 | 60 | 258 | 4.69e-50 | 165 |
| MS.gene50081.t1 | AT5G02840 | 47.059 | 204 | 93 | 4 | 42 | 235 | 60 | 258 | 1.57e-49 | 164 |
| MS.gene50081.t1 | AT1G01520 | 40.714 | 140 | 78 | 2 | 117 | 253 | 55 | 192 | 2.02e-27 | 105 |
Find 0 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATGACATTATTTTTA+AGG | - | 42776:13783-13802 | MS.gene50081:intergenic | 10.0% |
| !! | TATCTAATAAAGAAAAGAAA+TGG | - | 42776:12864-12883 | MS.gene50081:intergenic | 15.0% |
| !! | TATGTGAATTCAAATAAAAA+AGG | + | 42776:12054-12073 | MS.gene50081:intron | 15.0% |
| !!! | AAGATATTAATGTTTTTGTT+TGG | + | 42776:13233-13252 | MS.gene50081:intron | 15.0% |
| !!! | AGATATTAATGTTTTTGTTT+GGG | + | 42776:13234-13253 | MS.gene50081:intron | 15.0% |
| !!! | ATTTCTTTTCTTTATTAGAT+AGG | + | 42776:12863-12882 | MS.gene50081:intron | 15.0% |
| !!! | TTAATTTAAGCATTTTGTTT+GGG | + | 42776:14170-14189 | MS.gene50081:intron | 15.0% |
| !! | AAACCAACTGAAAATTATAA+AGG | - | 42776:14005-14024 | MS.gene50081:intergenic | 20.0% |
| !! | AACCAACTGAAAATTATAAA+GGG | - | 42776:14004-14023 | MS.gene50081:intergenic | 20.0% |
| !! | AATGTGAGAATAATACAAAA+TGG | - | 42776:11729-11748 | MS.gene50081:intergenic | 20.0% |
| !! | AATTGTGTAAATGAAATTTG+TGG | + | 42776:14981-15000 | MS.gene50081:intron | 20.0% |
| !! | ATATAGATATTAATTGTCAG+AGG | - | 42776:14908-14927 | MS.gene50081:intergenic | 20.0% |
| !! | CTTAATACCATTTCAAAATA+TGG | - | 42776:14497-14516 | MS.gene50081:intergenic | 20.0% |
| !!! | CATATTTTGAAATGGTATTA+AGG | + | 42776:14495-14514 | MS.gene50081:intron | 20.0% |
| !!! | CTTAATTTAAGCATTTTGTT+TGG | + | 42776:14169-14188 | MS.gene50081:intron | 20.0% |
| !!! | GATAAATTTTTTAAGGTTAC+AGG | - | 42776:13821-13840 | MS.gene50081:intergenic | 20.0% |
| !!! | GATATTAATGTTTTTGTTTG+GGG | + | 42776:13235-13254 | MS.gene50081:intron | 20.0% |
| !!! | TCATTTTTCATTATATATCC+AGG | - | 42776:13624-13643 | MS.gene50081:intergenic | 20.0% |
| !!! | TTCAATTTGAAATTCATTTC+AGG | + | 42776:12331-12350 | MS.gene50081:intron | 20.0% |
| ! | AAGTTGCAAACTAAAATGAA+AGG | - | 42776:11917-11936 | MS.gene50081:intergenic | 25.0% |
| ! | AATATCTGAGTGATTAATGT+GGG | - | 42776:14219-14238 | MS.gene50081:intergenic | 25.0% |
| ! | AATTTCATATCTAAAAGCCA+TGG | + | 42776:14127-14146 | MS.gene50081:intron | 25.0% |
| ! | CATAAATTGAAGAACATTGA+GGG | + | 42776:12428-12447 | MS.gene50081:intron | 25.0% |
| ! | CATTTCAAAATATGGAGATA+TGG | - | 42776:14489-14508 | MS.gene50081:intergenic | 25.0% |
| ! | CCAGTAACAAAAAATTTGTA+AGG | - | 42776:11964-11983 | MS.gene50081:intergenic | 25.0% |
| ! | CTAAATACCATGTAACAAAT+TGG | - | 42776:13721-13740 | MS.gene50081:intergenic | 25.0% |
| ! | GATTTATATCCAATGGTTAA+GGG | + | 42776:12999-13018 | MS.gene50081:intron | 25.0% |
| ! | TAACCATTGGATATAAATCA+TGG | - | 42776:12998-13017 | MS.gene50081:intergenic | 25.0% |
| ! | TGATTTATATCCAATGGTTA+AGG | + | 42776:12998-13017 | MS.gene50081:intron | 25.0% |
| ! | TTGTATACTTGAGAAAAATC+TGG | - | 42776:14735-14754 | MS.gene50081:intergenic | 25.0% |
| !! | AAAAAGATTGAAGCATTTGT+TGG | + | 42776:11791-11810 | MS.gene50081:CDS | 25.0% |
| !! | GTAAAGATTATTACCACTTT+TGG | - | 42776:13465-13484 | MS.gene50081:intergenic | 25.0% |
| !! | TTCCCTTTATAATTTTCAGT+TGG | + | 42776:13999-14018 | MS.gene50081:intron | 25.0% |
| !! | TTTTAGTCCTTCTTAATATG+AGG | - | 42776:13303-13322 | MS.gene50081:intergenic | 25.0% |
| !! | TTTTCTTTATTAGATAGGCT+TGG | + | 42776:12868-12887 | MS.gene50081:intron | 25.0% |
| !!! | ATACATTTTTTAGAGAAACG+AGG | + | 42776:12383-12402 | MS.gene50081:intron | 25.0% |
| !!! | CATATCTCCATATTTTGAAA+TGG | + | 42776:14487-14506 | MS.gene50081:intron | 25.0% |
| !!! | CCTTACAAATTTTTTGTTAC+TGG | + | 42776:11961-11980 | MS.gene50081:intron | 25.0% |
| !!! | GTCATTTTATTCAAGATAGT+GGG | + | 42776:13793-13812 | MS.gene50081:intron | 25.0% |
| !!! | GTGGTCAGATAAATTTTTTA+AGG | - | 42776:13828-13847 | MS.gene50081:intergenic | 25.0% |
| !!! | TACATTTTTTAGAGAAACGA+GGG | + | 42776:12384-12403 | MS.gene50081:intron | 25.0% |
| !!! | TGTCATTTTATTCAAGATAG+TGG | + | 42776:13792-13811 | MS.gene50081:intron | 25.0% |
| !!! | TTAGAAAGTATTTTTGTGCA+TGG | - | 42776:13358-13377 | MS.gene50081:intergenic | 25.0% |
| AAAAAAGGCAATTAGAGCTT+AGG | + | 42776:14430-14449 | MS.gene50081:intron | 30.0% | |
| AAAAGGTTGTTTGGTTGTTA+AGG | + | 42776:12305-12324 | MS.gene50081:intron | 30.0% | |
| AATCAACTTTCTAATGAACC+AGG | - | 42776:12263-12282 | MS.gene50081:intergenic | 30.0% | |
| AATCCATGATTTAGTAATGC+AGG | + | 42776:12085-12104 | MS.gene50081:intron | 30.0% | |
| AGATGTTCAATTATGAGCTT+AGG | + | 42776:14612-14631 | MS.gene50081:intron | 30.0% | |
| AGTGAACATTGATGAGAATA+TGG | - | 42776:12196-12215 | MS.gene50081:intergenic | 30.0% | |
| ATAATAGGAGTTTCAAGCAT+TGG | - | 42776:13654-13673 | MS.gene50081:intergenic | 30.0% | |
| ATCAACTTTCTAATGAACCA+GGG | - | 42776:12262-12281 | MS.gene50081:intergenic | 30.0% | |
| ATGTTCAATTATGAGCTTAG+GGG | + | 42776:14614-14633 | MS.gene50081:intron | 30.0% | |
| CATTTACACAATTATCACAC+AGG | - | 42776:14974-14993 | MS.gene50081:intergenic | 30.0% | |
| CTTGGCATAATCAAAGATTT+GGG | - | 42776:14526-14545 | MS.gene50081:intergenic | 30.0% | |
| GAATATCTGAGTGATTAATG+TGG | - | 42776:14220-14239 | MS.gene50081:intergenic | 30.0% | |
| GAATGTAGGCTATAGATAAA+AGG | + | 42776:12728-12747 | MS.gene50081:intron | 30.0% | |
| GATGTTCAATTATGAGCTTA+GGG | + | 42776:14613-14632 | MS.gene50081:intron | 30.0% | |
| GATTTAGTAATGCAGGTAAT+TGG | + | 42776:12092-12111 | MS.gene50081:intron | 30.0% | |
| GCATAAATTGAAGAACATTG+AGG | + | 42776:12427-12446 | MS.gene50081:intron | 30.0% | |
| GGTATAGAATAAAAGAGAGA+CGG | - | 42776:12524-12543 | MS.gene50081:intergenic | 30.0% | |
| TAATGATATTGATGCACTTC+TGG | - | 42776:11865-11884 | MS.gene50081:intergenic | 30.0% | |
| TCAACAACATAGTAAATGTC+TGG | - | 42776:14654-14673 | MS.gene50081:intergenic | 30.0% | |
| TCTCAAGTATACAACTTCAT+TGG | + | 42776:14741-14760 | MS.gene50081:CDS | 30.0% | |
| TCTTGGCATAATCAAAGATT+TGG | - | 42776:14527-14546 | MS.gene50081:intergenic | 30.0% | |
| TTACCTGCATTACTAAATCA+TGG | - | 42776:12091-12110 | MS.gene50081:intergenic | 30.0% | |
| TTTACAGAAACTCAAACAGA+TGG | + | 42776:14794-14813 | MS.gene50081:CDS | 30.0% | |
| ! | ATTTAGAGCGTGATAAAATG+TGG | - | 42776:14563-14582 | MS.gene50081:intergenic | 30.0% |
| ! | CTTCAATCTTTTTCCAATCA+CGG | - | 42776:11784-11803 | MS.gene50081:intergenic | 30.0% |
| ! | TTTAGAGCGTGATAAAATGT+GGG | - | 42776:14562-14581 | MS.gene50081:intergenic | 30.0% |
| ! | TTTCTAAAAGTTCAGAAGAG+TGG | + | 42776:13371-13390 | MS.gene50081:CDS | 30.0% |
| ! | TTTTCGTACATGTGTATAGA+AGG | - | 42776:13180-13199 | MS.gene50081:intergenic | 30.0% |
| !! | CAAAACACCAATTTGTTACA+TGG | + | 42776:13711-13730 | MS.gene50081:CDS | 30.0% |
| !!! | AATTTTTTGTTACTGGTGCT+TGG | + | 42776:11968-11987 | MS.gene50081:intron | 30.0% |
| !!! | ATTTTTTGTTACTGGTGCTT+GGG | + | 42776:11969-11988 | MS.gene50081:intron | 30.0% |
| AAACGAGAAATTCACGAGAA+AGG | - | 42776:12941-12960 | MS.gene50081:intergenic | 35.0% | |
| AACAGACCCATGAAAAGAAA+CGG | + | 42776:12001-12020 | MS.gene50081:intron | 35.0% | |
| AACGAGAAATTCACGAGAAA+GGG | - | 42776:12940-12959 | MS.gene50081:intergenic | 35.0% | |
| AACTCCTATTATGAACACTG+TGG | + | 42776:13662-13681 | MS.gene50081:CDS | 35.0% | |
| AATAAAAGCCTTCCATTGAG+AGG | + | 42776:13961-13980 | MS.gene50081:CDS | 35.0% | |
| ACACAGGTCAATGATAAATC+AGG | - | 42776:14958-14977 | MS.gene50081:intergenic | 35.0% | |
| ACTACAAATCCAACATACCA+TGG | - | 42776:14147-14166 | MS.gene50081:intergenic | 35.0% | |
| AGGAATAGAGTCACAATGTT+TGG | - | 42776:12916-12935 | MS.gene50081:intergenic | 35.0% | |
| ATAAAAGGAGAGATTGAGAG+AGG | + | 42776:12743-12762 | MS.gene50081:intron | 35.0% | |
| ATACCTAACATTGTCCAGTT+AGG | + | 42776:12539-12558 | MS.gene50081:intron | 35.0% | |
| ATCTAAAAGCCATGGTATGT+TGG | + | 42776:14135-14154 | MS.gene50081:intron | 35.0% | |
| ATGCATGCCTCATATTAAGA+AGG | + | 42776:13293-13312 | MS.gene50081:intron | 35.0% | |
| ATGTCAATCATTGCATTGCA+AGG | + | 42776:11644-11663 | MS.gene50081:CDS | 35.0% | |
| ATGTTGCAAACACAAGAAAG+TGG | - | 42776:13847-13866 | MS.gene50081:intergenic | 35.0% | |
| ATTAAAGTCTTGCCTCTCAA+TGG | - | 42776:13976-13995 | MS.gene50081:intergenic | 35.0% | |
| ATTGTTCACTGCAATCATTG+TGG | - | 42776:13141-13160 | MS.gene50081:intergenic | 35.0% | |
| CAACTACCACATTTATCGAA+AGG | - | 42776:11682-11701 | MS.gene50081:intergenic | 35.0% | |
| CCAGATAATTTGGAGAATGT+AGG | + | 42776:12714-12733 | MS.gene50081:intron | 35.0% | |
| CCTACATTCTCCAAATTATC+TGG | - | 42776:12717-12736 | MS.gene50081:intergenic | 35.0% | |
| CGAATTCCTTTCGATAAATG+TGG | + | 42776:11673-11692 | MS.gene50081:CDS | 35.0% | |
| CTGCAAGAATTATTCACCTT+TGG | - | 42776:13886-13905 | MS.gene50081:intergenic | 35.0% | |
| CTGTAGTTATATTGTCTCAC+AGG | - | 42776:13511-13530 | MS.gene50081:intergenic | 35.0% | |
| GGAATAGAGTCACAATGTTT+GGG | - | 42776:12915-12934 | MS.gene50081:intergenic | 35.0% | |
| GTTGATATCAAAACCTATCC+TGG | + | 42776:14351-14370 | MS.gene50081:intron | 35.0% | |
| TAGCTAGTTATTTGAGAGCT+GGG | - | 42776:12487-12506 | MS.gene50081:intergenic | 35.0% | |
| TCCTACATCAACTAGAGATT+TGG | + | 42776:14270-14289 | MS.gene50081:intron | 35.0% | |
| TGAAGAGTGAAAAGGTTGTT+TGG | + | 42776:12296-12315 | MS.gene50081:intron | 35.0% | |
| TGACTATTAGATTCACCAAG+TGG | - | 42776:13937-13956 | MS.gene50081:intergenic | 35.0% | |
| TGATTGGATTCTGTTGTACT+TGG | + | 42776:14857-14876 | MS.gene50081:intron | 35.0% | |
| TGCTTACAAATGTATGGTCT+TGG | + | 42776:15015-15034 | MS.gene50081:intron | 35.0% | |
| TGCTTACATGAAACCACAAA+AGG | - | 42776:14028-14047 | MS.gene50081:intergenic | 35.0% | |
| TGTTATTCTGTCAGCTTGAT+TGG | + | 42776:14841-14860 | MS.gene50081:intron | 35.0% | |
| TGTTCAATTATGAGCTTAGG+GGG | + | 42776:14615-14634 | MS.gene50081:intron | 35.0% | |
| TTCGATAAATGTGGTAGTTG+CGG | + | 42776:11682-11701 | MS.gene50081:CDS | 35.0% | |
| TTTGTGGTTTCATGTAAGCA+GGG | + | 42776:14028-14047 | MS.gene50081:intron | 35.0% | |
| ! | ACCTTTTCACTCTTCAAAAC+AGG | - | 42776:12292-12311 | MS.gene50081:intergenic | 35.0% |
| ! | AGGATCTTTTCAATCTTCAC+CGG | + | 42776:13587-13606 | MS.gene50081:CDS | 35.0% |
| ! | ATAATTGAACATCTGAAGCG+TGG | - | 42776:14606-14625 | MS.gene50081:intergenic | 35.0% |
| ! | GTTTTGTGCAGAAAATCACA+CGG | - | 42776:12797-12816 | MS.gene50081:intergenic | 35.0% |
| ! | TGTGGTTGGTTCATTTATCA+TGG | - | 42776:13123-13142 | MS.gene50081:intergenic | 35.0% |
| ! | TTTAACTAGCCCAGATTTTG+AGG | + | 42776:15080-15099 | MS.gene50081:CDS | 35.0% |
| ! | TTTATCACGCTCTAAATGTC+TGG | + | 42776:14566-14585 | MS.gene50081:intron | 35.0% |
| ! | TTTTGTGGTTTCATGTAAGC+AGG | + | 42776:14027-14046 | MS.gene50081:intron | 35.0% |
| !! | ATCTGGGCTAGTTAAATTGA+TGG | - | 42776:15076-15095 | MS.gene50081:intergenic | 35.0% |
| !! | TTGGAAGCTTTTTGAGGATA+GGG | - | 42776:13446-13465 | MS.gene50081:intergenic | 35.0% |
| !! | TTTCAGTTGGTTTCCTTTTG+TGG | + | 42776:14012-14031 | MS.gene50081:intron | 35.0% |
| !! | TTTGGAAGCTTTTTGAGGAT+AGG | - | 42776:13447-13466 | MS.gene50081:intergenic | 35.0% |
| !! | TTTTCATGGGTCTGTTGATT+TGG | - | 42776:11997-12016 | MS.gene50081:intergenic | 35.0% |
| !!! | TACGCAGTTTTTTCTGAAAC+AGG | + | 42776:14074-14093 | MS.gene50081:intron | 35.0% |
| !!! | TCCTGTTTTGAAGAGTGAAA+AGG | + | 42776:12288-12307 | MS.gene50081:intron | 35.0% |
| AAAAGGTTGCACCTGATTCT+TGG | - | 42776:12831-12850 | MS.gene50081:intergenic | 40.0% | |
| AAACCTGGACAGAGGAATAA+GGG | - | 42776:11759-11778 | MS.gene50081:intergenic | 40.0% | |
| ACAGACCCATGAAAAGAAAC+GGG | + | 42776:12002-12021 | MS.gene50081:intron | 40.0% | |
| ACTACCTCACTCAATCACAA+GGG | - | 42776:12683-12702 | MS.gene50081:intergenic | 40.0% | |
| AGAAATTCACGAGAAAGGGA+AGG | - | 42776:12936-12955 | MS.gene50081:intergenic | 40.0% | |
| AGGAATTTCGTGTCAAGTCT+AGG | - | 42776:12972-12991 | MS.gene50081:intergenic | 40.0% | |
| ATACCGTCTCAACATCTATG+CGG | - | 42776:14821-14840 | MS.gene50081:intergenic | 40.0% | |
| ATCAACTAGAGATTTGGCCT+AGG | + | 42776:14276-14295 | MS.gene50081:intron | 40.0% | |
| CACACGTGCTTACAAATGTA+TGG | + | 42776:15009-15028 | MS.gene50081:intron | 40.0% | |
| CATACATTTGTAAGCACGTG+TGG | - | 42776:15011-15030 | MS.gene50081:intergenic | 40.0% | |
| CATTTACAAGCCAGTCATGT+AGG | + | 42776:14453-14472 | MS.gene50081:intron | 40.0% | |
| CCAAATCATGTGTTAGTGTC+GGG | - | 42776:12578-12597 | MS.gene50081:intergenic | 40.0% | |
| CCAACTCAACTTCTCAGAAT+CGG | - | 42776:14320-14339 | MS.gene50081:intergenic | 40.0% | |
| CCTCAAAAAGCTTCCAAAAG+TGG | + | 42776:13449-13468 | MS.gene50081:CDS | 40.0% | |
| GAAATGGCCTCACACAAAAA+AGG | - | 42776:12848-12867 | MS.gene50081:intergenic | 40.0% | |
| GAATTGGGAATTGTCCTAAC+TGG | - | 42776:12556-12575 | MS.gene50081:intergenic | 40.0% | |
| GACACCACAGTGTTCATAAT+AGG | - | 42776:13669-13688 | MS.gene50081:intergenic | 40.0% | |
| GAGGACAAGGTGAAAATCTA+GGG | + | 42776:12644-12663 | MS.gene50081:intron | 40.0% | |
| GCCAAATCATGTGTTAGTGT+CGG | - | 42776:12579-12598 | MS.gene50081:intergenic | 40.0% | |
| GCGCCATGATTTATATCCAA+TGG | + | 42776:12992-13011 | MS.gene50081:intron | 40.0% | |
| GGTCAATCTGGTAACCTAAA+GGG | - | 42776:12894-12913 | MS.gene50081:intergenic | 40.0% | |
| GGTGAAGATTGAAAAGATCC+TGG | - | 42776:13588-13607 | MS.gene50081:intergenic | 40.0% | |
| GTAGCTAGTTATTTGAGAGC+TGG | - | 42776:12488-12507 | MS.gene50081:intergenic | 40.0% | |
| GTCTAATAACACATCGTGTG+CGG | - | 42776:12174-12193 | MS.gene50081:intergenic | 40.0% | |
| TAAAAGAGAGACGGTTAGTG+AGG | - | 42776:12515-12534 | MS.gene50081:intergenic | 40.0% | |
| TAATCCCTTGTGATTGAGTG+AGG | + | 42776:12676-12695 | MS.gene50081:intron | 40.0% | |
| TACGTATCTACAAAGTCAGC+AGG | - | 42776:13334-13353 | MS.gene50081:intergenic | 40.0% | |
| TACTACCTCACTCAATCACA+AGG | - | 42776:12684-12703 | MS.gene50081:intergenic | 40.0% | |
| TATTTGACAGCTCCTGTACT+CGG | + | 42776:13555-13574 | MS.gene50081:intron | 40.0% | |
| TCAACTTCTCAGAATCGGAT+AGG | - | 42776:14315-14334 | MS.gene50081:intergenic | 40.0% | |
| TCACAATGTTTGGGTCAATC+TGG | - | 42776:12906-12925 | MS.gene50081:intergenic | 40.0% | |
| TCTAATAACACATCGTGTGC+GGG | - | 42776:12173-12192 | MS.gene50081:intergenic | 40.0% | |
| TGGATCGAAGACTGTTATAC+AGG | + | 42776:11811-11830 | MS.gene50081:CDS | 40.0% | |
| TGTAAATGCTCAGTTGCTTC+CGG | - | 42776:14780-14799 | MS.gene50081:intergenic | 40.0% | |
| TGTCCTAACTGGACAATGTT+AGG | - | 42776:12545-12564 | MS.gene50081:intergenic | 40.0% | |
| TGTTTAGCACATGCCATGAT+GGG | - | 42776:13062-13081 | MS.gene50081:intergenic | 40.0% | |
| TTCACTGCAATCATTGTGGT+TGG | - | 42776:13137-13156 | MS.gene50081:intergenic | 40.0% | |
| TTGCTATCACTCCAAGAATC+AGG | + | 42776:12817-12836 | MS.gene50081:intron | 40.0% | |
| TTGGATATAAATCATGGCGC+AGG | - | 42776:12992-13011 | MS.gene50081:intergenic | 40.0% | |
| TTGTGATTGAGTGAGGTAGT+AGG | + | 42776:12683-12702 | MS.gene50081:intron | 40.0% | |
| TTGTTTAGCACATGCCATGA+TGG | - | 42776:13063-13082 | MS.gene50081:intergenic | 40.0% | |
| ! | ACGCTCTAAATGTCTGGTAA+TGG | + | 42776:14572-14591 | MS.gene50081:intron | 40.0% |
| ! | ACTCAACCCGTTTCTTTTCA+TGG | - | 42776:12011-12030 | MS.gene50081:intergenic | 40.0% |
| ! | AGAAGTATGGCCTGGAAAAA+AGG | + | 42776:14415-14434 | MS.gene50081:intron | 40.0% |
| ! | ATGTGTTAGTGTCGGGAATT+GGG | - | 42776:12571-12590 | MS.gene50081:intergenic | 40.0% |
| ! | ATTCAGTCTTGAGCGTTGTA+GGG | + | 42776:14236-14255 | MS.gene50081:intron | 40.0% |
| ! | CGCTCTAAATGTCTGGTAAT+GGG | + | 42776:14573-14592 | MS.gene50081:intron | 40.0% |
| ! | CTCAACCCGTTTCTTTTCAT+GGG | - | 42776:12010-12029 | MS.gene50081:intergenic | 40.0% |
| ! | GAAAGGTGTAGACTTAAAGC+AGG | - | 42776:11900-11919 | MS.gene50081:intergenic | 40.0% |
| ! | GCCAAATCTCTAGTTGATGT+AGG | - | 42776:14274-14293 | MS.gene50081:intergenic | 40.0% |
| ! | GGCTAGTTAAATTGATGGAC+AGG | - | 42776:15071-15090 | MS.gene50081:intergenic | 40.0% |
| ! | TATTCAGTCTTGAGCGTTGT+AGG | + | 42776:14235-14254 | MS.gene50081:intron | 40.0% |
| ! | TCTTATTTACCACGAGGACA+AGG | + | 42776:12631-12650 | MS.gene50081:intron | 40.0% |
| !! | AAGCTTTTTGAGGATAGGGA+TGG | - | 42776:13442-13461 | MS.gene50081:intergenic | 40.0% |
| !! | AATTGGTGTTTTGCAACGTG+TGG | - | 42776:13704-13723 | MS.gene50081:intergenic | 40.0% |
| !! | AGCTTTTTGAGGATAGGGAT+GGG | - | 42776:13441-13460 | MS.gene50081:intergenic | 40.0% |
| !! | AGGAGTTTCAAGCATTGGTA+TGG | - | 42776:13649-13668 | MS.gene50081:intergenic | 40.0% |
| !! | CCACTTTTGGAAGCTTTTTG+AGG | - | 42776:13452-13471 | MS.gene50081:intergenic | 40.0% |
| !! | CTGAAAGTACTCCAAAAGTG+CGG | + | 42776:13911-13930 | MS.gene50081:CDS | 40.0% |
| !! | GCAGCTTTTCTTTTAGGTCT+GGG | - | 42776:13419-13438 | MS.gene50081:intergenic | 40.0% |
| !! | GTATGGTCTTGGTTCTGTAT+AGG | + | 42776:15026-15045 | MS.gene50081:intron | 40.0% |
| !!! | GCTCTAATTGCCTTTTTTCC+AGG | - | 42776:14428-14447 | MS.gene50081:intergenic | 40.0% |
| AAGTCTTGCCTCTCAATGGA+AGG | - | 42776:13972-13991 | MS.gene50081:intergenic | 45.0% | |
| ACCCACTGTAGCTAGAAGTA+TGG | + | 42776:14402-14421 | MS.gene50081:intron | 45.0% | |
| AGAGCGTGATAAAATGTGGG+CGG | - | 42776:14559-14578 | MS.gene50081:intergenic | 45.0% | |
| ATTCCCTTATTCCTCTGTCC+AGG | + | 42776:11753-11772 | MS.gene50081:CDS | 45.0% | |
| CAAACCTGGACAGAGGAATA+AGG | - | 42776:11760-11779 | MS.gene50081:intergenic | 45.0% | |
| CATTGGCAGTGTATTTGACC+CGG | + | 42776:14758-14777 | MS.gene50081:CDS | 45.0% | |
| CCCGACACTAACACATGATT+TGG | + | 42776:12575-12594 | MS.gene50081:intron | 45.0% | |
| CCTAACTCAACCTACATGAC+TGG | - | 42776:14466-14485 | MS.gene50081:intergenic | 45.0% | |
| CGAGGACAAGGTGAAAATCT+AGG | + | 42776:12643-12662 | MS.gene50081:intron | 45.0% | |
| GGCGAGTTAGCCAGATAATT+TGG | + | 42776:12704-12723 | MS.gene50081:intron | 45.0% | |
| GGGTCAATCTGGTAACCTAA+AGG | - | 42776:12895-12914 | MS.gene50081:intergenic | 45.0% | |
| GTAAATGCTCAGTTGCTTCC+GGG | - | 42776:14779-14798 | MS.gene50081:intergenic | 45.0% | |
| TAGGCAGTTAAGCACTACCT+AGG | - | 42776:14296-14315 | MS.gene50081:intergenic | 45.0% | |
| TATCCAGGTTCAAGCAAAGC+CGG | - | 42776:13609-13628 | MS.gene50081:intergenic | 45.0% | |
| TGCGTGAAACCCTTAACCAT+TGG | - | 42776:13011-13030 | MS.gene50081:intergenic | 45.0% | |
| TGGAGACACCAGAAAGAGAA+AGG | - | 42776:11709-11728 | MS.gene50081:intergenic | 45.0% | |
| TTAGATAGGCTTGGCCCTTT+AGG | + | 42776:12877-12896 | MS.gene50081:intron | 45.0% | |
| TTCACCTTTGGCACTGCAAA+AGG | - | 42776:13874-13893 | MS.gene50081:intergenic | 45.0% | |
| TTTCCAATCACGGTCAAACC+TGG | - | 42776:11774-11793 | MS.gene50081:intergenic | 45.0% | |
| ! | AGATTTTCACCTTGTCCTCG+TGG | - | 42776:12643-12662 | MS.gene50081:intergenic | 45.0% |
| ! | ATGTAAGCAGGGCAAGGTTT+TGG | + | 42776:14039-14058 | MS.gene50081:intron | 45.0% |
| ! | CATGTGTTAGTGTCGGGAAT+TGG | - | 42776:12572-12591 | MS.gene50081:intergenic | 45.0% |
| ! | CCAGTCATGTAGGTTGAGTT+AGG | + | 42776:14463-14482 | MS.gene50081:intron | 45.0% |
| ! | CCGATTCTGAGAAGTTGAGT+TGG | + | 42776:14317-14336 | MS.gene50081:intron | 45.0% |
| ! | GCCATACTTCTAGCTACAGT+GGG | - | 42776:14406-14425 | MS.gene50081:intergenic | 45.0% |
| ! | GGATGGGCAGCTTTTCTTTT+AGG | - | 42776:13425-13444 | MS.gene50081:intergenic | 45.0% |
| ! | GGGCAATCTTATTTACCACG+AGG | + | 42776:12625-12644 | MS.gene50081:intron | 45.0% |
| ! | TGTAAGCAGGGCAAGGTTTT+GGG | + | 42776:14040-14059 | MS.gene50081:intron | 45.0% |
| !! | AGGAGTGGTTTGTTATTCCC+TGG | + | 42776:12242-12261 | MS.gene50081:intron | 45.0% |
| !! | GCTTTTCTTTTAGGTCTGGG+CGG | - | 42776:13416-13435 | MS.gene50081:intergenic | 45.0% |
| !! | GGCAGCTTTTCTTTTAGGTC+TGG | - | 42776:13420-13439 | MS.gene50081:intergenic | 45.0% |
| !!! | GGTGCAACCTTTTTTGTGTG+AGG | + | 42776:12838-12857 | MS.gene50081:intron | 45.0% |
| !! | AAAATATATATTTATACATA+TGG | - | 42776:13487-13506 | MS.gene50081:intergenic | 5.0% |
| AACACATCGTGTGCGGGAAA+GGG | - | 42776:12167-12186 | MS.gene50081:intergenic | 50.0% | |
| AACCACTCCTACTAGAGCAG+TGG | - | 42776:12232-12251 | MS.gene50081:intergenic | 50.0% | |
| ACCACTCCTACTAGAGCAGT+GGG | - | 42776:12231-12250 | MS.gene50081:intergenic | 50.0% | |
| ATCAGAACACTGGCCCATCA+TGG | + | 42776:13046-13065 | MS.gene50081:intron | 50.0% | |
| ATTTGGCACCCGCGAAACAA+GGG | + | 42776:12592-12611 | MS.gene50081:intron | 50.0% | |
| CCTATCCTGGATCCACTATC+AGG | + | 42776:14364-14383 | MS.gene50081:intron | 50.0% | |
| CCTGGTAATTGTCCGAGTAC+AGG | - | 42776:13570-13589 | MS.gene50081:intergenic | 50.0% | |
| CCTGTACTCGGACAATTACC+AGG | + | 42776:13567-13586 | MS.gene50081:CDS | 50.0% | |
| CGAAACAAGGGAGCTGTAAG+CGG | + | 42776:12604-12623 | MS.gene50081:intron | 50.0% | |
| CTACAGTGGGTCGATGATAC+AGG | - | 42776:14393-14412 | MS.gene50081:intergenic | 50.0% | |
| GAAACAAGGGAGCTGTAAGC+GGG | + | 42776:12605-12624 | MS.gene50081:intron | 50.0% | |
| GAGAGACGGTTAGTGAGGTT+AGG | - | 42776:12510-12529 | MS.gene50081:intergenic | 50.0% | |
| GAGCGTGATAAAATGTGGGC+GGG | - | 42776:14558-14577 | MS.gene50081:intergenic | 50.0% | |
| GGACCGCATAGATGTTGAGA+CGG | + | 42776:14815-14834 | MS.gene50081:CDS | 50.0% | |
| GGTTTCATGTAAGCAGGGCA+AGG | + | 42776:14033-14052 | MS.gene50081:intron | 50.0% | |
| GTTGCGGTCCTTTCTCTTTC+TGG | + | 42776:11698-11717 | MS.gene50081:CDS | 50.0% | |
| TAACACATCGTGTGCGGGAA+AGG | - | 42776:12168-12187 | MS.gene50081:intergenic | 50.0% | |
| TAAGGGTTTCACGCAGTGGA+GGG | + | 42776:13016-13035 | MS.gene50081:intron | 50.0% | |
| TGAACACTGTGGTGTCTTCC+TGG | + | 42776:13673-13692 | MS.gene50081:CDS | 50.0% | |
| TGATACAGGTGGCCTGATAG+TGG | - | 42776:14379-14398 | MS.gene50081:intergenic | 50.0% | |
| TGGTTAAGGGTTTCACGCAG+TGG | + | 42776:13012-13031 | MS.gene50081:intron | 50.0% | |
| TGTCCAGGTTTGACCGTGAT+TGG | + | 42776:11768-11787 | MS.gene50081:CDS | 50.0% | |
| TTAAGGGTTTCACGCAGTGG+AGG | + | 42776:13015-13034 | MS.gene50081:intron | 50.0% | |
| TTGCAACGTGTGGTTTGACC+AGG | - | 42776:13694-13713 | MS.gene50081:intergenic | 50.0% | |
| ! | CATGCCTTTTGCAGTGCCAA+AGG | + | 42776:13867-13886 | MS.gene50081:intron | 50.0% |
| ! | CTGTAGCTAGAAGTATGGCC+TGG | + | 42776:14407-14426 | MS.gene50081:intron | 50.0% |
| ! | CTTACAGCTCCCTTGTTTCG+CGG | - | 42776:12604-12623 | MS.gene50081:intergenic | 50.0% |
| ! | GGCCATACTTCTAGCTACAG+TGG | - | 42776:14407-14426 | MS.gene50081:intergenic | 50.0% |
| ! | TTACAGCTCCCTTGTTTCGC+GGG | - | 42776:12603-12622 | MS.gene50081:intergenic | 50.0% |
| !! | CCTGATAGTGGATCCAGGAT+AGG | - | 42776:14367-14386 | MS.gene50081:intergenic | 50.0% |
| !! | GGGTTGGTCTATCAGAACAC+TGG | + | 42776:13036-13055 | MS.gene50081:intron | 50.0% |
| !! | TTTCTTTTAGGTCTGGGCGG+AGG | - | 42776:13413-13432 | MS.gene50081:intergenic | 50.0% |
| ACACATCGTGTGCGGGAAAG+GGG | - | 42776:12166-12185 | MS.gene50081:intergenic | 55.0% | |
| CAGTGGGTCGATGATACAGG+TGG | - | 42776:14390-14409 | MS.gene50081:intergenic | 55.0% | |
| CCACTCCTACTAGAGCAGTG+GGG | - | 42776:12230-12249 | MS.gene50081:intergenic | 55.0% | |
| GATTTGGCACCCGCGAAACA+AGG | + | 42776:12591-12610 | MS.gene50081:intron | 55.0% | |
| GGGCGGAGGAAGATGTTCAT+TGG | - | 42776:13399-13418 | MS.gene50081:intergenic | 55.0% | |
| GTGGGCGGGATAACAGATCT+TGG | - | 42776:14544-14563 | MS.gene50081:intergenic | 55.0% | |
| TCACGGTCAAACCTGGACAG+AGG | - | 42776:11767-11786 | MS.gene50081:intergenic | 55.0% | |
| TCATGCCCCACTGCTCTAGT+AGG | + | 42776:12222-12241 | MS.gene50081:intron | 55.0% | |
| ! | ACTCCAAAAGTGCGGCCACT+TGG | + | 42776:13919-13938 | MS.gene50081:CDS | 55.0% |
| ! | TCACCAAGTGGCCGCACTTT+TGG | - | 42776:13925-13944 | MS.gene50081:intergenic | 55.0% |
| !! | TCACCGGCTTTGCTTGAACC+TGG | + | 42776:13603-13622 | MS.gene50081:CDS | 55.0% |
| CCCCACTGCTCTAGTAGGAG+TGG | + | 42776:12227-12246 | MS.gene50081:intron | 60.0% | |
| GGTTTCACGCAGTGGAGGGT+TGG | + | 42776:13020-13039 | MS.gene50081:intron | 60.0% | |
| !! | GGTGGCCTGATAGTGGATCC+AGG | - | 42776:14372-14391 | MS.gene50081:intergenic | 60.0% |
| CATCGTGTGCGGGAAAGGGG+AGG | - | 42776:12163-12182 | MS.gene50081:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42776 | gene | 11635 | 15107 | 11635 | ID=MS.gene50081 |
| 42776 | mRNA | 11635 | 15107 | 11635 | ID=MS.gene50081.t1;Parent=MS.gene50081 |
| 42776 | exon | 11635 | 11832 | 11635 | ID=MS.gene50081.t1.exon1;Parent=MS.gene50081.t1 |
| 42776 | CDS | 11635 | 11832 | 11635 | ID=cds.MS.gene50081.t1;Parent=MS.gene50081.t1 |
| 42776 | exon | 13347 | 13470 | 13347 | ID=MS.gene50081.t1.exon2;Parent=MS.gene50081.t1 |
| 42776 | CDS | 13347 | 13470 | 13347 | ID=cds.MS.gene50081.t1;Parent=MS.gene50081.t1 |
| 42776 | exon | 13565 | 13732 | 13565 | ID=MS.gene50081.t1.exon3;Parent=MS.gene50081.t1 |
| 42776 | CDS | 13565 | 13732 | 13565 | ID=cds.MS.gene50081.t1;Parent=MS.gene50081.t1 |
| 42776 | exon | 13881 | 13982 | 13881 | ID=MS.gene50081.t1.exon4;Parent=MS.gene50081.t1 |
| 42776 | CDS | 13881 | 13982 | 13881 | ID=cds.MS.gene50081.t1;Parent=MS.gene50081.t1 |
| 42776 | exon | 14727 | 14836 | 14727 | ID=MS.gene50081.t1.exon5;Parent=MS.gene50081.t1 |
| 42776 | CDS | 14727 | 14836 | 14727 | ID=cds.MS.gene50081.t1;Parent=MS.gene50081.t1 |
| 42776 | exon | 15048 | 15107 | 15048 | ID=MS.gene50081.t1.exon6;Parent=MS.gene50081.t1 |
| 42776 | CDS | 15048 | 15107 | 15048 | ID=cds.MS.gene50081.t1;Parent=MS.gene50081.t1 |
| Gene Sequence |
| Protein sequence |
