AlfalfaGEDB | MS.gene059161

M. sativa cultivar XinJiangDaYe / MS.gene059161

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059161.t1	XP_013465692.1	91	189	16	1	1	189	1	188	4.50E-91	344

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059161.t1	A0A072VE41	91.0	189	16	1	1	189	1	188	3.3e-91	344.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene059161	0.81337	2.65E-51	-1.69E-46
MS.gene049378	MS.gene059161	0.819647	1.04E-52	-1.69E-46
MS.gene049435	MS.gene059161	0.806816	6.84E-50	-1.69E-46
MS.gene050105	MS.gene059161	0.811998	5.29E-51	-1.69E-46
MS.gene050226	MS.gene059161	0.827254	1.73E-54	-1.69E-46
MS.gene050227	MS.gene059161	0.805453	1.33E-49	-1.69E-46
MS.gene050228	MS.gene059161	0.819106	1.38E-52	-1.69E-46
MS.gene050442	MS.gene059161	0.843257	1.57E-58	-1.69E-46
MS.gene050605	MS.gene059161	0.809111	2.22E-50	-1.69E-46
MS.gene050680	MS.gene059161	0.85834	8.81E-63	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene013579	MS.gene059161	PPI
MS.gene021450	MS.gene059161	PPI
MS.gene057114	MS.gene059161	PPI
MS.gene057116	MS.gene059161	PPI
MS.gene059160	MS.gene059161	PPI
MS.gene059161	MS.gene54540	PPI
MS.gene059161	MS.gene06907	PPI
MS.gene059161	MS.gene31640	PPI
MS.gene059162	MS.gene059161	PPI
MS.gene06696	MS.gene059161	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059161.t1	MTR_1g007905	91.005	189	16	1	1	189	1	188	4.52e-123	346
MS.gene059161.t1	MTR_3g091680	55.844	154	53	5	37	189	1	140	6.26e-44	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059161.t1	AT5G53030	38.333	180	70	9	45	189	40	213	1.70e-19	82.8
MS.gene059161.t1	AT5G53030	38.333	180	70	9	45	189	40	213	1.94e-19	83.2
MS.gene059161.t1	AT4G27810	35.176	199	78	11	9	188	1	167	5.51e-11	59.3

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Find 47 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCAAAACTACCCTCA+CGG	0.642581	1.2:+12076431	None:intergenic
AAACACGGTCGTGATAACAC+TGG	0.682213	1.2:+12076799	None:intergenic
AAATAATAGAATTGACCGTG+AGG	0.684752	1.2:-12076446	MS.gene059161:CDS
AACAAGGGCAGTGTGAATTT+TGG	0.173203	1.2:-12076496	MS.gene059161:CDS
AACTCCACCACCGCGAACGA+CGG	0.539846	1.2:-12076761	MS.gene059161:CDS
AATAATAGAATTGACCGTGA+GGG	0.656653	1.2:-12076445	MS.gene059161:CDS
ACATGGTACTTCACATTTGT+GGG	0.406088	1.2:-12076341	None:intergenic
ACCATCACCAACAACTGTTT+TGG	0.363972	1.2:-12076575	MS.gene059161:CDS
AGAAGGGGAAGCTTCTCACA+TGG	0.717228	1.2:-12076358	MS.gene059161:CDS
AGATCACAAGAGTTAAGAGA+AGG	0.565850	1.2:-12076375	MS.gene059161:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAATAGAATTGACCGTG+AGG	-	chr1.2:12076782-12076801	MS.gene059161:CDS	30.0%
AATAATAGAATTGACCGTGA+GGG	-	chr1.2:12076783-12076802	MS.gene059161:CDS	30.0%
GTATAGGGATAGTAATAACA+AGG	-	chr1.2:12076716-12076735	MS.gene059161:CDS	30.0%
TATATCGATACCGTTTAAGT+GGG	-	chr1.2:12076491-12076510	MS.gene059161:CDS	30.0%
AAAAGTCAAAACTACCCTCA+CGG	+	chr1.2:12076800-12076819	None:intergenic	35.0%
AGATCACAAGAGTTAAGAGA+AGG	-	chr1.2:12076853-12076872	MS.gene059161:CDS	35.0%
ATCACAAGAGTTAAGAGAAG+GGG	-	chr1.2:12076855-12076874	MS.gene059161:CDS	35.0%
CTATATCGATACCGTTTAAG+TGG	-	chr1.2:12076490-12076509	MS.gene059161:CDS	35.0%
GATCACAAGAGTTAAGAGAA+GGG	-	chr1.2:12076854-12076873	MS.gene059161:CDS	35.0%
TAACAACGTTGTTAGAGCTT+TGG	-	chr1.2:12076575-12076594	MS.gene059161:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	12076342	12076908	12076342	ID=MS.gene059161
chr1.2	mRNA	12076342	12076908	12076342	ID=MS.gene059161.t1;Parent=MS.gene059161
chr1.2	exon	12076342	12076908	12076342	ID=MS.gene059161.t1.exon1;Parent=MS.gene059161.t1
chr1.2	CDS	12076342	12076908	12076342	ID=cds.MS.gene059161.t1;Parent=MS.gene059161.t1

Gene Sequence

>MS.gene059161

ATGACTTCAGAGAATAACAAGAAACTTGATCATGATGATGATGAATTAAGGAGCAACTACAACACACCACAAAAACTTTCTCTTCCACCAGTGTTATCACGACCGTGTTTTTCGTCGGAGGCACCAACTCCACCACCGCGAACGACGGCTATATCGATACCGTTTAAGTGGGAGGAAGCACCAGGGAAGCCTAGGTCATGTCATACACGACCAGAGCCAAAAGAAAGAGAAGGTAACAACGTTGTTAGAGCTTTGGAACTTCCTCCTAGGTTGTTGTCTTTGGAGAGGGAGAGTACTAGCAATATTTACGCACCATCACCAACAACTGTTTTGGAAGGTCCATACGTTGGACGTGCAGTGTCTTTTACGACGTCGTATAGGGATAGTAATAACAAGGGCAGTGTGAATTTTGGGTCTAGTAGGTGGGGTGGGTTGAAGAAAAATAATAGAATTGACCGTGAGGGTAGTTTTGACTTTTCAAGTTGGAGTGTTGATGGGGGTGATAAGGTGAAGATCACAAGAGTTAAGAGAAGGGGAAGCTTCTCACATGGTACTTCACATTTGTGG

Protein sequence

>MS.gene059161.t1

MTSENNKKLDHDDDELRSNYNTPQKLSLPPVLSRPCFSSEAPTPPPRTTAISIPFKWEEAPGKPRSCHTRPEPKEREGNNVVRALELPPRLLSLERESTSNIYAPSPTTVLEGPYVGRAVSFTTSYRDSNNKGSVNFGSSRWGGLKKNNRIDREGSFDFSSWSVDGGDKVKITRVKRRGSFSHGTSHLW