AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50194

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50194.t1 MTR_5g071860 96.684 754 25 0 1 754 1 754 0.0 1514
MS.gene50194.t1 MTR_5g071630 93.460 734 34 3 21 754 6 725 0.0 1400
MS.gene50194.t1 MTR_5g071827 96.697 666 22 0 89 754 1 666 0.0 1342
MS.gene50194.t1 MTR_6g033165 53.482 761 322 3 26 754 59 819 0.0 843
MS.gene50194.t1 MTR_6g007697 53.101 774 336 6 8 754 3 776 0.0 833
MS.gene50194.t1 MTR_5g034500 52.241 781 338 5 8 754 3 782 0.0 828
MS.gene50194.t1 MTR_3g094090 52.497 781 323 10 18 752 14 792 0.0 811
MS.gene50194.t1 MTR_8g099090 46.474 794 383 7 1 754 1 792 0.0 726
MS.gene50194.t1 MTR_2g438150 46.205 751 387 5 18 754 42 789 0.0 692
MS.gene50194.t1 MTR_2g438150 46.247 746 384 5 18 749 42 784 0.0 688
MS.gene50194.t1 MTR_4g094660 46.082 753 383 7 18 754 42 787 0.0 672
MS.gene50194.t1 MTR_8g063840 45.157 764 391 9 15 754 81 840 0.0 658
MS.gene50194.t1 MTR_7g108480 40.819 757 419 7 2 754 42 773 0.0 619
MS.gene50194.t1 MTR_8g107510 43.025 767 384 15 28 751 23 779 0.0 604
MS.gene50194.t1 MTR_3g094090 50.000 608 258 8 190 752 1 607 0.0 599
MS.gene50194.t1 MTR_4g099260 40.448 759 414 9 26 754 65 815 0.0 598
MS.gene50194.t1 MTR_2g438160 50.973 565 274 1 34 598 58 619 0.0 595
MS.gene50194.t1 MTR_2g008820 40.390 770 427 5 11 754 86 849 0.0 590
MS.gene50194.t1 MTR_8g063900 39.706 748 392 8 13 754 51 745 0.0 577
MS.gene50194.t1 MTR_8g022130 41.644 730 401 10 26 754 61 766 0.0 574
MS.gene50194.t1 MTR_5g070670 38.889 774 433 7 11 754 86 849 0.0 557
MS.gene50194.t1 MTR_8g088200 38.289 760 438 7 19 754 30 782 0.0 553
MS.gene50194.t1 MTR_4g094660 45.124 605 312 6 166 754 1 601 9.81e-179 525
MS.gene50194.t1 MTR_5g034590 39.146 281 152 4 425 705 88 349 2.21e-63 216
MS.gene50194.t1 MTR_5g034590 45.349 86 42 1 88 168 5 90 1.21e-13 73.6
MS.gene50194.t1 MTR_8g022160 52.663 169 72 4 25 192 60 221 2.75e-46 166
MS.gene50194.t1 MTR_1g029310 32.540 126 78 2 176 301 12 130 7.37e-17 78.2
MS.gene50194.t1 MTR_6g045057 32.051 156 99 3 181 333 8 159 3.80e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50194.t1 AT2G30070 67.241 754 205 2 1 754 1 712 0.0 1055
MS.gene50194.t1 AT2G30070 65.403 633 177 2 122 754 2 592 0.0 870
MS.gene50194.t1 AT1G70300 53.631 785 321 9 8 754 3 782 0.0 837
MS.gene50194.t1 AT5G14880 53.599 778 324 9 10 752 4 779 0.0 821
MS.gene50194.t1 AT2G40540 51.799 778 332 5 18 752 15 792 0.0 819
MS.gene50194.t1 AT2G40540 51.799 778 332 5 18 752 15 792 0.0 819
MS.gene50194.t1 AT2G40540 51.799 778 332 5 18 752 15 792 0.0 819
MS.gene50194.t1 AT2G40540 51.799 778 332 5 18 752 15 792 0.0 819
MS.gene50194.t1 AT2G40540 51.799 778 332 5 18 752 15 792 0.0 819
MS.gene50194.t1 AT3G02050 51.447 795 339 7 1 754 1 789 0.0 803
MS.gene50194.t1 AT4G23640 47.348 773 370 5 18 754 4 775 0.0 745
MS.gene50194.t1 AT1G60160 44.841 756 403 9 11 754 74 827 0.0 672
MS.gene50194.t1 AT2G35060 45.405 740 372 6 34 754 66 792 0.0 659
MS.gene50194.t1 AT2G35060 45.405 740 372 6 34 754 66 792 0.0 659
MS.gene50194.t1 AT2G35060 45.405 740 372 6 34 754 66 792 0.0 659
MS.gene50194.t1 AT1G31120 45.658 760 378 5 18 754 49 796 0.0 659
MS.gene50194.t1 AT4G19960 46.471 751 371 5 30 754 62 807 0.0 657
MS.gene50194.t1 AT2G35060 45.344 741 372 7 34 754 66 793 0.0 655
MS.gene50194.t1 AT4G19960 45.632 767 370 6 30 754 62 823 0.0 648
MS.gene50194.t1 AT4G19960 44.916 777 371 6 30 754 62 833 0.0 644
MS.gene50194.t1 AT4G13420 41.492 764 426 9 2 754 32 785 0.0 639
MS.gene50194.t1 AT5G09400 39.406 774 434 7 11 754 90 858 0.0 572
MS.gene50194.t1 AT4G33530 39.948 771 430 8 11 754 91 855 0.0 566
MS.gene50194.t1 AT4G19960 45.812 585 289 4 196 754 4 586 9.15e-173 509
MS.gene50194.t1 AT4G33530 39.088 614 352 5 163 754 14 627 1.10e-153 461

Find 136 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTCATCATCTTCTTTA+AGG 0.071012 5.2:-60509633 None:intergenic
TATTCCAAATTTCTTTAAAA+TGG 0.164431 5.2:-60514100 None:intergenic
GGGTGCTTTCATTTATCTTT+TGG 0.188337 5.2:+60509662 MS.gene50194:CDS
AAAATGAAAGATAGCGAAAT+TGG 0.192897 5.2:-60513406 None:intergenic
GTCAATTCATTTGTTTGTTC+TGG 0.193129 5.2:-60513850 None:intergenic
ATTAATATCCAATTGATTTC+TGG 0.209276 5.2:-60512798 None:intergenic
CAAAGATCAGCAGTCCTTTC+TGG 0.213735 5.2:-60510605 None:intergenic
TCATCTGTTGGTTGCTGATT+TGG 0.217408 5.2:-60510495 None:intergenic
ATAAGTAACACCTGATTCTT+TGG 0.245477 5.2:-60514037 None:intergenic
CTGCAATGACTCGACTTTAT+AGG 0.258661 5.2:-60514004 None:intergenic
AGTATATCCGTGCCTGATTT+TGG 0.260994 5.2:+60512440 MS.gene50194:CDS
CGCTAGTAATTATAATTGTT+TGG 0.267594 5.2:+60513278 MS.gene50194:CDS
TTTCTGCAGAAGCTGTATTT+TGG 0.274753 5.2:+60512619 MS.gene50194:intron
CTTACATGTTTCCTATTGTT+TGG 0.291797 5.2:+60513322 MS.gene50194:CDS
ATTGGGATCCACCCGCCTTC+AGG 0.306821 5.2:-60513388 None:intergenic
TTTCTCCGGTCTATATGTTT+AGG 0.315964 5.2:+60511846 MS.gene50194:CDS
AAAAGCCATGCTGCAACAAC+TGG 0.319980 5.2:-60511761 None:intergenic
TCTTGGCCATCACATGAAAA+TGG 0.322011 5.2:-60513967 None:intergenic
CTGCTGATCTTTGTTCTGTT+GGG 0.346699 5.2:+60510615 MS.gene50194:CDS
AACACACTTTGAAATTGAAT+TGG 0.347433 5.2:+60513920 MS.gene50194:CDS
CCATCATGTTTGTATCTCTA+AGG 0.349905 5.2:-60512848 None:intergenic
CACACTTCTAGCAAAATATA+TGG 0.357605 5.2:+60512762 MS.gene50194:CDS
CGAAGGAATTCTACATGTTT+CGG 0.361961 5.2:+60513722 MS.gene50194:CDS
AGGACTCGTCTCGAAGTTCT+TGG 0.362162 5.2:-60513984 None:intergenic
ATAATGTTCACATGGAACTA+TGG 0.362609 5.2:+60513436 MS.gene50194:CDS
CTCAAAACCACTGGCATTGA+AGG 0.371128 5.2:+60511872 MS.gene50194:CDS
TGATGGAAGAAACTTAAATA+TGG 0.373743 5.2:+60513879 MS.gene50194:CDS
CTTTCACTTTCACTGACATA+AGG 0.374750 5.2:-60513676 None:intergenic
GGAGTGGTGCTTTCAATAAC+AGG 0.385254 5.2:+60511911 MS.gene50194:CDS
CAAAGTCTTGGAGTAGTCTA+TGG 0.389439 5.2:+60509553 MS.gene50194:CDS
TCAGGTGTTACTTATATAGT+TGG 0.390413 5.2:+60514045 MS.gene50194:CDS
TTTATGTTCCAGAAATCAAT+TGG 0.391774 5.2:+60512790 MS.gene50194:CDS
ATAGTTCCATGTGAACATTA+TGG 0.393280 5.2:-60513434 None:intergenic
CATACTTCTTTGCTAGAAGT+TGG 0.398742 5.2:+60514186 MS.gene50194:CDS
AACTTCTCTCAATGTCATAA+TGG 0.400991 5.2:-60512497 None:intergenic
GTGATCACTCCTGCAATATC+AGG 0.405182 5.2:+60510663 MS.gene50194:CDS
GCTACTTCCAACATAATATC+AGG 0.420506 5.2:-60514162 None:intergenic
ATGGTACGTGTCCCGGGAAT+CGG 0.422579 5.2:+60513538 MS.gene50194:CDS
TTTCACTTTCACTGACATAA+GGG 0.424981 5.2:-60513675 None:intergenic
GTTCAATAGATCCAAACAAT+AGG 0.427051 5.2:-60513333 None:intergenic
ACTGCTGATCTTTGTTCTGT+TGG 0.427972 5.2:+60510614 MS.gene50194:CDS
AAAGTGGCCACTATGAAAAC+TGG 0.429133 5.2:-60512642 None:intergenic
CTGAAAATGAGACCGATTCC+CGG 0.431566 5.2:-60513550 None:intergenic
ACCGAAAATAGCCGGGATAC+CGG 0.432386 5.2:-60513584 None:intergenic
CTTAGGCATGGTACGTGTCC+CGG 0.432429 5.2:+60513531 MS.gene50194:CDS
CACCCATATATGCCAAAATC+AGG 0.433639 5.2:-60512452 None:intergenic
AAGTGAATTCTTGCCTGGTA+TGG 0.436212 5.2:-60512529 None:intergenic
ATTATAATTGTTTGGAAACA+AGG 0.437809 5.2:+60513286 MS.gene50194:CDS
TGTTCTTTGAAAAGCATCCT+AGG 0.448299 5.2:+60510580 MS.gene50194:CDS
AACATGATGGGTCATGCATA+TGG 0.455340 5.2:+60512861 MS.gene50194:CDS
GATCAACTACCTGATATTGC+AGG 0.462951 5.2:-60510672 None:intergenic
TTGGGATCCACCCGCCTTCA+GGG 0.465191 5.2:-60513387 None:intergenic
GTCATGTCTGCTGATGATAA+TGG 0.466473 5.2:+60509724 MS.gene50194:CDS
AACAATTTAATGCGCAGCAT+TGG 0.467070 5.2:-60512719 None:intergenic
GTGAAAGATTAGTCATCAGC+AGG 0.473070 5.2:+60513692 MS.gene50194:CDS
CAGGTGTTACTTATATAGTT+GGG 0.474382 5.2:+60514046 MS.gene50194:CDS
TGTTCTACAAATTGCTGAGA+AGG 0.474822 5.2:-60509379 None:intergenic
TTGGTATATACAATATATTC+CGG 0.475208 5.2:+60511798 MS.gene50194:CDS
GATATACTTGTCGGTTCCAC+CGG 0.475794 5.2:-60511817 None:intergenic
GAAGGATGGTTGTCATTAAG+TGG 0.476467 5.2:+60511890 MS.gene50194:CDS
AAATGAAAGATAGCGAAATT+GGG 0.479735 5.2:-60513405 None:intergenic
TTCTTTGCTAGAAGTTGGTA+TGG 0.480280 5.2:+60514191 MS.gene50194:CDS
AGTATATCGTGCACTTTCTC+CGG 0.482721 5.2:+60511832 MS.gene50194:CDS
AACTTAAATATGGAAGATCT+TGG 0.484592 5.2:+60513889 MS.gene50194:CDS
ACTAACACCTGATGGAATGC+TGG 0.486728 5.2:-60513625 None:intergenic
TGAAAATGAGACCGATTCCC+GGG 0.487702 5.2:-60513549 None:intergenic
GTTCGGTTGGCTTACTGTCA+TGG 0.488966 5.2:-60511585 None:intergenic
GCAGATAAATTCTCATCTGT+TGG 0.490212 5.2:-60510507 None:intergenic
CTTTGTTTAGCTGTCACAGT+TGG 0.490283 5.2:+60512825 MS.gene50194:CDS
GAATTTACCAGCATTCCATC+AGG 0.492372 5.2:+60513618 MS.gene50194:CDS
TTGGGAACTTGCATGACAAT+TGG 0.496346 5.2:+60510633 MS.gene50194:CDS
CATGATGCTGAATGGAGAAA+AGG 0.497785 5.2:-60511709 None:intergenic
TCCTACAACAGCAGCAAAAG+TGG 0.499235 5.2:-60512658 None:intergenic
TTATAATTGTTTGGAAACAA+GGG 0.501972 5.2:+60513287 MS.gene50194:CDS
TTGGCTTACTGTCATGGAGT+TGG 0.503361 5.2:-60511579 None:intergenic
TTAGGCATGGTACGTGTCCC+GGG 0.504461 5.2:+60513532 MS.gene50194:CDS
ATGAGCAAGATGTTATCCTT+AGG 0.509044 5.2:+60513502 MS.gene50194:CDS
CAGAGGATTCTGCTGATACA+TGG 0.509581 5.2:+60510538 MS.gene50194:CDS
AATGAATTGACTATAGATGA+TGG 0.510618 5.2:+60513862 MS.gene50194:CDS
TTTAGGTTTCTCAAAACCAC+TGG 0.512735 5.2:+60511863 MS.gene50194:CDS
GTATACAAGACCTCATTCTC+AGG 0.515828 5.2:+60509601 MS.gene50194:CDS
ATAAAATGACCGAAAATAGC+CGG 0.516232 5.2:-60513592 None:intergenic
TAATCTTGCTTCCGGTATCC+CGG 0.517669 5.2:+60513573 MS.gene50194:CDS
CAGAGAACCTGATATTATGT+TGG 0.518058 5.2:+60514155 MS.gene50194:CDS
ACTCTAGCATACCAAAGTCT+TGG 0.519686 5.2:+60509541 MS.gene50194:CDS
CATAGACTACTCCAAGACTT+TGG 0.520654 5.2:-60509552 None:intergenic
GAGGTCTTGTATACATAAAG+AGG 0.520785 5.2:-60509592 None:intergenic
TCATGTATCAGAATTTAAAG+AGG 0.520819 5.2:+60509497 MS.gene50194:intron
CATAAAGAGGAGAAGTACTT+AGG 0.523094 5.2:-60509579 None:intergenic
CCAATTTGATGTTGAAAACA+AGG 0.523273 5.2:+60513474 MS.gene50194:CDS
GTGTGAACAATCTTCACTCT+AGG 0.524092 5.2:-60512744 None:intergenic
CATCAGCAGGGTTGGTCCGA+AGG 0.525501 5.2:+60513705 MS.gene50194:CDS
AGATTAGTCATCAGCAGGGT+TGG 0.526796 5.2:+60513697 MS.gene50194:CDS
TTAAATATGGAAGATCTTGG+TGG 0.527152 5.2:+60513892 MS.gene50194:CDS
CGAAACATGTAGAATTCCTT+CGG 0.528907 5.2:-60513721 None:intergenic
CCTTAGAGATACAAACATGA+TGG 0.530055 5.2:+60512848 MS.gene50194:CDS
ATGTGTTCCATGATGCTGAA+TGG 0.533306 5.2:-60511717 None:intergenic
CATGCCTAAGCATGGTCCTA+AGG 0.533404 5.2:-60513518 None:intergenic
TTATCCTTAGGACCATGCTT+AGG 0.552419 5.2:+60513514 MS.gene50194:CDS
AGCAGTCCTTTCTGGAACCT+AGG 0.553551 5.2:-60510597 None:intergenic
AGTTTCTACAAAGCCATACC+AGG 0.558577 5.2:+60512516 MS.gene50194:CDS
TAAAATGACCGAAAATAGCC+GGG 0.558708 5.2:-60513591 None:intergenic
TTTCGGTGCATTGTTCGATA+CGG 0.559472 5.2:+60513739 MS.gene50194:CDS
TCTGCAAAATCCCTGAAGGC+GGG 0.566872 5.2:+60513377 MS.gene50194:CDS
TCTCAGCAATTTGTAGAACA+AGG 0.578403 5.2:+60509382 MS.gene50194:CDS
AAAGCCATGCTGCAACAACT+GGG 0.580024 5.2:-60511760 None:intergenic
AACAACTGGGGCAAACATGA+AGG 0.580870 5.2:-60511747 None:intergenic
GTCTGCAAAATCCCTGAAGG+CGG 0.582828 5.2:+60513376 MS.gene50194:CDS
GGAGACAATGTATGCTGACA+TGG 0.585033 5.2:+60512285 MS.gene50194:CDS
AAAGTGCACGATATACTTGT+CGG 0.589834 5.2:-60511826 None:intergenic
TTTATCTGCTTATTCAACAG+AGG 0.591386 5.2:+60510521 MS.gene50194:CDS
AAACCACTGGCATTGAAGGA+TGG 0.591920 5.2:+60511876 MS.gene50194:CDS
TTGCCCCAGTTGTTGCAGCA+TGG 0.595472 5.2:+60511756 MS.gene50194:CDS
GCAAAATCCCTGAAGGCGGG+TGG 0.603430 5.2:+60513380 MS.gene50194:CDS
CTTAGAGATACAAACATGAT+GGG 0.605319 5.2:+60512849 MS.gene50194:CDS
AGAAACCTAAACATATAGAC+CGG 0.605945 5.2:-60511851 None:intergenic
TTATGGCCATAATGTTCACA+TGG 0.606833 5.2:+60513428 MS.gene50194:CDS
CAACCATCCTTCAATGCCAG+TGG 0.609172 5.2:-60511879 None:intergenic
AAGCATCCTAGGTTCCAGAA+AGG 0.615881 5.2:+60510591 MS.gene50194:CDS
TCTGTCTGCAAAATCCCTGA+AGG 0.618821 5.2:+60513373 MS.gene50194:CDS
GAGAAGTGAGTATAATGCAA+AGG 0.623702 5.2:-60510445 None:intergenic
ACACGTACCATGCCTAAGCA+TGG 0.641414 5.2:-60513526 None:intergenic
CTTAGGACCATGCTTAGGCA+TGG 0.643084 5.2:+60513519 MS.gene50194:CDS
ATATATGCCAAAATCAGGCA+CGG 0.656813 5.2:-60512447 None:intergenic
TGAAAGATTAGTCATCAGCA+GGG 0.665534 5.2:+60513693 MS.gene50194:CDS
AGTTGGGCATTCCTATGCAG+AGG 0.666901 5.2:+60514062 MS.gene50194:CDS
CAACTGTGACAGCTAAACAA+AGG 0.675981 5.2:-60512824 None:intergenic
ACTTGCATGACAATTGGTGA+TGG 0.676889 5.2:+60510639 MS.gene50194:CDS
GTATATACAATATATTCCGG+TGG 0.677707 5.2:+60511801 MS.gene50194:CDS
AGAACAAGGAATATCTCACC+AGG 0.679281 5.2:+60509396 MS.gene50194:CDS
TCTGCTGATGATAATGGAGA+AGG 0.680990 5.2:+60509730 MS.gene50194:CDS
ATGGTTGTCATTAAGTGGAG+TGG 0.687522 5.2:+60511895 MS.gene50194:CDS
AAGCCATGCTGCAACAACTG+GGG 0.696949 5.2:-60511759 None:intergenic
TGTTGTCACAAACATAACAG+TGG 0.717093 5.2:-60513245 None:intergenic
GAGACAATGTATGCTGACAT+GGG 0.720378 5.2:+60512286 MS.gene50194:CDS
AATAAGGTTAGAGTTAGACA+TGG 0.720937 5.2:-60514218 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAACTAAAAATTATGA+TGG + chr5.2:60512049-60512068 MS.gene50194:intron 10.0%
!!! AAAAGAAAAAGGTATTTATA+GGG - chr5.2:60510873-60510892 None:intergenic 15.0%
!!! AAAATAATAATGGATAGTTT+TGG + chr5.2:60510195-60510214 MS.gene50194:intron 15.0%
!!! AAATAATATCGATATTTTTG+TGG - chr5.2:60512562-60512581 None:intergenic 15.0%
!!! AAATCAAATGTTTTCATTTT+TGG - chr5.2:60511257-60511276 None:intergenic 15.0%
!!! AAATTAAAAGTATACAATGT+TGG + chr5.2:60512336-60512355 MS.gene50194:intron 15.0%
!!! AATTTTAGACTTTATACTTT+TGG + chr5.2:60510073-60510092 MS.gene50194:intron 15.0%
!!! CTTTTTGGTTTAAAATATTA+TGG - chr5.2:60511292-60511311 None:intergenic 15.0%
!!! GACAAATTTAATGTAAATTT+TGG + chr5.2:60510229-60510248 MS.gene50194:intron 15.0%
!!! TAAATTTAAACTACTTTTCT+TGG + chr5.2:60513203-60513222 MS.gene50194:intron 15.0%
!!! TAGCTTTTACAAAATAATAA+TGG + chr5.2:60510185-60510204 MS.gene50194:intron 15.0%
!!! TATTCCAAATTTCTTTAAAA+TGG - chr5.2:60514103-60514122 None:intergenic 15.0%
!!! TTACAATTTTGATAATAAGT+TGG + chr5.2:60513786-60513805 MS.gene50194:CDS 15.0%
!!! TTTGGAACAAAAAATAAAAA+TGG + chr5.2:60510247-60510266 MS.gene50194:intron 15.0%
!! AGATGATTAATAGATATATC+AGG - chr5.2:60512136-60512155 None:intergenic 20.0%
!! ATTATAATTGTTTGGAAACA+AGG + chr5.2:60513286-60513305 MS.gene50194:CDS 20.0%
!! CTAAACTAATTATGAAGAAA+CGG - chr5.2:60513004-60513023 None:intergenic 20.0%
!! CTTTCTTATGTTTCTTAATT+AGG + chr5.2:60510365-60510384 MS.gene50194:intron 20.0%
!! GTTAATTACATACAAATTTG+TGG - chr5.2:60512037-60512056 None:intergenic 20.0%
!! TATTATTAATCTCTTATGCT+TGG + chr5.2:60509467-60509486 MS.gene50194:intron 20.0%
!! TGTAACTATTTATTCCAAAA+TGG - chr5.2:60510294-60510313 None:intergenic 20.0%
!! TTATAATTGTTTGGAAACAA+GGG + chr5.2:60513287-60513306 MS.gene50194:CDS 20.0%
!! TTGGTATATACAATATATTC+CGG + chr5.2:60511798-60511817 MS.gene50194:CDS 20.0%
!!! AAGATGATGAAGAAATTTTT+GGG + chr5.2:60509641-60509660 MS.gene50194:CDS 20.0%
!!! ATTAATATCCAATTGATTTC+TGG - chr5.2:60512801-60512820 None:intergenic 20.0%
!!! CTCAAATACATGATTTTTTA+AGG - chr5.2:60510904-60510923 None:intergenic 20.0%
!!! CTGTCATCATTTTATTTATA+TGG - chr5.2:60509930-60509949 None:intergenic 20.0%
!!! CTTTATTTTAGGTTTCAATT+TGG + chr5.2:60510104-60510123 MS.gene50194:intron 20.0%
!!! GAAAAGAAAAAGGTATTTAT+AGG - chr5.2:60510874-60510893 None:intergenic 20.0%
!!! GATAGTTTTGGAATTTAAAA+TGG + chr5.2:60510207-60510226 MS.gene50194:intron 20.0%
!!! GTCTTTTGTTTGTAATTTTT+TGG - chr5.2:60513060-60513079 None:intergenic 20.0%
!!! TCTTCCATTTTAAAGAAATT+TGG + chr5.2:60514096-60514115 MS.gene50194:CDS 20.0%
!!! TGGTTTCTTTTCTTTATTTT+AGG + chr5.2:60510093-60510112 MS.gene50194:intron 20.0%
!!! TGTTATAAATGAAACCATTT+TGG + chr5.2:60510277-60510296 MS.gene50194:intron 20.0%
!!! TTAGGGATATTTTTGTAATT+CGG + chr5.2:60513083-60513102 MS.gene50194:intron 20.0%
! AAAATGAAAGATAGCGAAAT+TGG - chr5.2:60513409-60513428 None:intergenic 25.0%
! AAACTCATATAAAGGACATT+TGG + chr5.2:60509890-60509909 MS.gene50194:intron 25.0%
! AAATGAAAGATAGCGAAATT+GGG - chr5.2:60513408-60513427 None:intergenic 25.0%
! AACATCATAATAGAATCTGA+AGG - chr5.2:60510707-60510726 None:intergenic 25.0%
! AACTTAAATATGGAAGATCT+TGG + chr5.2:60513889-60513908 MS.gene50194:CDS 25.0%
! AACTTTATCAACCACAAATT+TGG - chr5.2:60512087-60512106 None:intergenic 25.0%
! AATGAATTGACTATAGATGA+TGG + chr5.2:60513862-60513881 MS.gene50194:CDS 25.0%
! ACATCATAATAGAATCTGAA+GGG - chr5.2:60510706-60510725 None:intergenic 25.0%
! ACTAAAATTCGCTCTATTTA+TGG - chr5.2:60510844-60510863 None:intergenic 25.0%
! ACTATGTTAACCACTTAAAA+AGG + chr5.2:60512164-60512183 MS.gene50194:intron 25.0%
! AGGATGAAAAGAAAAGAAAA+AGG - chr5.2:60510884-60510903 None:intergenic 25.0%
! AGTAAAACTGACTAACTTAT+AGG - chr5.2:60511939-60511958 None:intergenic 25.0%
! ATTGAATAGACATAATGTAG+CGG - chr5.2:60511616-60511635 None:intergenic 25.0%
! CAAATCAAAAGAAATCTCTT+TGG + chr5.2:60510321-60510340 MS.gene50194:intron 25.0%
! CGCTAGTAATTATAATTGTT+TGG + chr5.2:60513278-60513297 MS.gene50194:CDS 25.0%
! CTAAAATTCGCTCTATTTAT+GGG - chr5.2:60510843-60510862 None:intergenic 25.0%
! TAAAATTCGCTCTATTTATG+GGG - chr5.2:60510842-60510861 None:intergenic 25.0%
! TACAAACAAAAGACATGTTA+GGG + chr5.2:60513066-60513085 MS.gene50194:intron 25.0%
! TCAAGAAGATTGTCTAAATT+TGG + chr5.2:60512187-60512206 MS.gene50194:intron 25.0%
! TCAATTATATCTACTCATCA+AGG + chr5.2:60509833-60509852 MS.gene50194:intron 25.0%
! TCAGCTAAAGTTACAATTTA+AGG - chr5.2:60511362-60511381 None:intergenic 25.0%
! TCATGTATCAGAATTTAAAG+AGG + chr5.2:60509497-60509516 MS.gene50194:intron 25.0%
! TCATTATGATACTTGAAGTA+TGG + chr5.2:60513175-60513194 MS.gene50194:intron 25.0%
! TCTGTTTATAATAACTAACG+TGG + chr5.2:60510944-60510963 MS.gene50194:intron 25.0%
! TGATGGAAGAAACTTAAATA+TGG + chr5.2:60513879-60513898 MS.gene50194:CDS 25.0%
! TTAATCTAAACACTGGAAAA+GGG - chr5.2:60512894-60512913 None:intergenic 25.0%
! TTACAAACAAAAGACATGTT+AGG + chr5.2:60513065-60513084 MS.gene50194:intron 25.0%
! TTTAATCTAAACACTGGAAA+AGG - chr5.2:60512895-60512914 None:intergenic 25.0%
! TTTATGTTCCAGAAATCAAT+TGG + chr5.2:60512790-60512809 MS.gene50194:CDS 25.0%
! TTTCCAGTGTTTAGATTAAA+CGG + chr5.2:60512895-60512914 MS.gene50194:intron 25.0%
! TTTCGGTTTAAAAAAGCTAA+TGG - chr5.2:60511220-60511239 None:intergenic 25.0%
! TTTCTTCATCATCTTCTTTA+AGG - chr5.2:60509636-60509655 None:intergenic 25.0%
!! AATGTCCTTTATATGAGTTT+TGG - chr5.2:60509890-60509909 None:intergenic 25.0%
!! AGATGATGAAGAAATTTTTG+GGG + chr5.2:60509642-60509661 MS.gene50194:CDS 25.0%
!! GAAGATGATGAAGAAATTTT+TGG + chr5.2:60509640-60509659 MS.gene50194:CDS 25.0%
!! TGAACAATTGATTCTAACAA+TGG - chr5.2:60510404-60510423 None:intergenic 25.0%
!! TTTTTATCCTAAAATGTGTG+AGG + chr5.2:60512921-60512940 MS.gene50194:intron 25.0%
!!! AACACACTTTGAAATTGAAT+TGG + chr5.2:60513920-60513939 MS.gene50194:CDS 25.0%
!!! ATTTTAAAAGCCAAAGAATC+AGG + chr5.2:60514027-60514046 MS.gene50194:CDS 25.0%
!!! CAATTTGGTCACTTTTTTTT+TGG + chr5.2:60510119-60510138 MS.gene50194:intron 25.0%
!!! TGAAAACATTTGATTTTGCA+AGG + chr5.2:60511261-60511280 MS.gene50194:intron 25.0%
!!! TTCGCTATCTTTCATTTTTA+TGG + chr5.2:60513411-60513430 MS.gene50194:CDS 25.0%
!!! TTGTTATTTGTTTTACAGAG+AGG + chr5.2:60510150-60510169 MS.gene50194:intron 25.0%
AACTTCTCTCAATGTCATAA+TGG - chr5.2:60512500-60512519 None:intergenic 30.0%
AAGACAGAGAAGGAAAATTA+TGG - chr5.2:60510007-60510026 None:intergenic 30.0%
AGAAACCTAAACATATAGAC+CGG - chr5.2:60511854-60511873 None:intergenic 30.0%
ATAAAATGACCGAAAATAGC+CGG - chr5.2:60513595-60513614 None:intergenic 30.0%
ATAAGGATCAACTCTTGAAA+CGG - chr5.2:60511459-60511478 None:intergenic 30.0%
ATAAGTAACACCTGATTCTT+TGG - chr5.2:60514040-60514059 None:intergenic 30.0%
ATAATGTTCACATGGAACTA+TGG + chr5.2:60513436-60513455 MS.gene50194:CDS 30.0%
ATACAAAAACTAACACCTGA+TGG - chr5.2:60513636-60513655 None:intergenic 30.0%
ATAGTTCCATGTGAACATTA+TGG - chr5.2:60513437-60513456 None:intergenic 30.0%
CAATCTTCAATCATTGATGA+TGG + chr5.2:60509755-60509774 MS.gene50194:intron 30.0%
CACACTTCTAGCAAAATATA+TGG + chr5.2:60512762-60512781 MS.gene50194:CDS 30.0%
CATAACTATTCTACATGGAA+CGG - chr5.2:60510990-60511009 None:intergenic 30.0%
CCAATTTGATGTTGAAAACA+AGG + chr5.2:60513474-60513493 MS.gene50194:CDS 30.0%
CTTACATGTTTCCTATTGTT+TGG + chr5.2:60513322-60513341 MS.gene50194:CDS 30.0%
CTTAGAGATACAAACATGAT+GGG + chr5.2:60512849-60512868 MS.gene50194:CDS 30.0%
GTATATACAATATATTCCGG+TGG + chr5.2:60511801-60511820 MS.gene50194:CDS 30.0%
GTATGCTAGACTAATATACT+TGG - chr5.2:60512363-60512382 None:intergenic 30.0%
GTCAATTCATTTGTTTGTTC+TGG - chr5.2:60513853-60513872 None:intergenic 30.0%
GTTCAATAGATCCAAACAAT+AGG - chr5.2:60513336-60513355 None:intergenic 30.0%
TAAACAGAAAGTTGACACTA+CGG - chr5.2:60510932-60510951 None:intergenic 30.0%
TGAACATGTTAGTAAAAACG+AGG + chr5.2:60511059-60511078 MS.gene50194:intron 30.0%
TGGCTTAAAGTGAAAAATAG+TGG - chr5.2:60512592-60512611 None:intergenic 30.0%
TTAAATATGGAAGATCTTGG+TGG + chr5.2:60513892-60513911 MS.gene50194:CDS 30.0%
TTAAGCAGCTTAAAATCCAA+AGG - chr5.2:60509807-60509826 None:intergenic 30.0%
TTCAGCCAAAACTCATATAA+AGG + chr5.2:60509882-60509901 MS.gene50194:intron 30.0%
TTGTAAAAGCTATACCAAGA+TGG - chr5.2:60510177-60510196 None:intergenic 30.0%
TTTATCTGCTTATTCAACAG+AGG + chr5.2:60510521-60510540 MS.gene50194:CDS 30.0%
TTTCACTTTCACTGACATAA+GGG - chr5.2:60513678-60513697 None:intergenic 30.0%
! ATAATGTAGCGGAATATGTT+CGG - chr5.2:60511605-60511624 None:intergenic 30.0%
! ATGGACAGCATAATTCTTTT+TGG - chr5.2:60511307-60511326 None:intergenic 30.0%
! ATTTTCAGTAATCTTGCTTC+CGG + chr5.2:60513565-60513584 MS.gene50194:CDS 30.0%
! GTGTTTCTTTTCAATTCCTT+TGG + chr5.2:60509788-60509807 MS.gene50194:intron 30.0%
! TACTTGTTGCACAAGTAAAA+GGG + chr5.2:60510773-60510792 MS.gene50194:intron 30.0%
! TGTTTACCATTTTCATGTGA+TGG + chr5.2:60513961-60513980 MS.gene50194:CDS 30.0%
! TTACTTGTTGCACAAGTAAA+AGG + chr5.2:60510772-60510791 MS.gene50194:intron 30.0%
! TTTTTCTGCACTCTCAATAA+AGG + chr5.2:60512312-60512331 MS.gene50194:CDS 30.0%
!! ATCTTCTTGACCTTTTTAAG+TGG - chr5.2:60512177-60512196 None:intergenic 30.0%
!! CAGGTGTTACTTATATAGTT+GGG + chr5.2:60514046-60514065 MS.gene50194:CDS 30.0%
!! GTCTCATGTATCATTTTAGT+TGG + chr5.2:60511686-60511705 MS.gene50194:CDS 30.0%
!! TCAGGTGTTACTTATATAGT+TGG + chr5.2:60514045-60514064 MS.gene50194:CDS 30.0%
!! TGGTCTTGTAAAAAACTGAA+TGG + chr5.2:60510800-60510819 MS.gene50194:intron 30.0%
!! TGTGGTTGATAAAGTTATGT+TGG + chr5.2:60512091-60512110 MS.gene50194:intron 30.0%
!!! AACTACTTTTCTTGGTTTGT+AGG + chr5.2:60513211-60513230 MS.gene50194:intron 30.0%
!!! ACTACTTTTCTTGGTTTGTA+GGG + chr5.2:60513212-60513231 MS.gene50194:intron 30.0%
!!! ATCATTGATGATGGTACTTT+TGG + chr5.2:60509764-60509783 MS.gene50194:intron 30.0%
!!! CCTTGTTTTCAACATCAAAT+TGG - chr5.2:60513477-60513496 None:intergenic 30.0%
AAAGCTAATGGTGTAAACAG+AGG - chr5.2:60511208-60511227 None:intergenic 35.0%
AAAGTGCACGATATACTTGT+CGG - chr5.2:60511829-60511848 None:intergenic 35.0%
AACAATTTAATGCGCAGCAT+TGG - chr5.2:60512722-60512741 None:intergenic 35.0%
AATATCAGGTAGTTGATCAG+GGG + chr5.2:60510677-60510696 MS.gene50194:intron 35.0%
AATGCAAGAAAATGAGTACC+TGG - chr5.2:60509417-60509436 None:intergenic 35.0%
ATATATGCCAAAATCAGGCA+CGG - chr5.2:60512450-60512469 None:intergenic 35.0%
ATCAACCACAAATTTGGAAG+TGG - chr5.2:60512081-60512100 None:intergenic 35.0%
ATCTGTGACATTGCTAATGA+TGG - chr5.2:60511326-60511345 None:intergenic 35.0%
ATGAGCAAGATGTTATCCTT+AGG + chr5.2:60513502-60513521 MS.gene50194:CDS 35.0%
ATGTTAAGGTCATAGCTTAC+AGG - chr5.2:60510742-60510761 None:intergenic 35.0%
ATTAGACATCAAGACAGAGA+AGG - chr5.2:60510017-60510036 None:intergenic 35.0%
CAATATCAGGTAGTTGATCA+GGG + chr5.2:60510676-60510695 MS.gene50194:intron 35.0%
CAGAGAACCTGATATTATGT+TGG + chr5.2:60514155-60514174 MS.gene50194:CDS 35.0%
CAGGTACAGAACTTTGTATA+AGG - chr5.2:60511476-60511495 None:intergenic 35.0%
CATACTTCTTTGCTAGAAGT+TGG + chr5.2:60514186-60514205 MS.gene50194:CDS 35.0%
CCATCATGTTTGTATCTCTA+AGG - chr5.2:60512851-60512870 None:intergenic 35.0%
CCTTAGAGATACAAACATGA+TGG + chr5.2:60512848-60512867 MS.gene50194:CDS 35.0%
CGAAACATGTAGAATTCCTT+CGG - chr5.2:60513724-60513743 None:intergenic 35.0%
CGAAGGAATTCTACATGTTT+CGG + chr5.2:60513722-60513741 MS.gene50194:CDS 35.0%
CTTTCACTTTCACTGACATA+AGG - chr5.2:60513679-60513698 None:intergenic 35.0%
GAGAAGTGAGTATAATGCAA+AGG - chr5.2:60510448-60510467 None:intergenic 35.0%
GAGGCGTAATCAATATACTA+AGG - chr5.2:60513116-60513135 None:intergenic 35.0%
GCAGATAAATTCTCATCTGT+TGG - chr5.2:60510510-60510529 None:intergenic 35.0%
GCTACTTCCAACATAATATC+AGG - chr5.2:60514165-60514184 None:intergenic 35.0%
GCTTCTGCAGAAAAATAGTA+TGG - chr5.2:60512612-60512631 None:intergenic 35.0%
GGTTAGTGAAGTTACATTGA+TGG - chr5.2:60512016-60512035 None:intergenic 35.0%
TAAAATGACCGAAAATAGCC+GGG - chr5.2:60513594-60513613 None:intergenic 35.0%
TACTGAAATGAGACACGAAA+AGG - chr5.2:60511524-60511543 None:intergenic 35.0%
TAGCTCATTATCATCCAATG+TGG + chr5.2:60511136-60511155 MS.gene50194:intron 35.0%
TCTCAGCAATTTGTAGAACA+AGG + chr5.2:60509382-60509401 MS.gene50194:CDS 35.0%
TCTTAAAGTGAATTCTTGCC+TGG - chr5.2:60512537-60512556 None:intergenic 35.0%
TGACCGTTTAATCTAAACAC+TGG - chr5.2:60512901-60512920 None:intergenic 35.0%
TGTTCTACAAATTGCTGAGA+AGG - chr5.2:60509382-60509401 None:intergenic 35.0%
TGTTGTCACAAACATAACAG+TGG - chr5.2:60513248-60513267 None:intergenic 35.0%
TTATGGCCATAATGTTCACA+TGG + chr5.2:60513428-60513447 MS.gene50194:CDS 35.0%
TTGTTCAGTTATTGTACTGC+AGG + chr5.2:60510417-60510436 MS.gene50194:intron 35.0%
TTTACTAAACTGCGTTCAGT+AGG + chr5.2:60511953-60511972 MS.gene50194:intron 35.0%
TTTCTCCGGTCTATATGTTT+AGG + chr5.2:60511846-60511865 MS.gene50194:CDS 35.0%
! CTTTTGTGTATCAGTGGTAT+TGG + chr5.2:60511779-60511798 MS.gene50194:CDS 35.0%
! GAGGTCTTGTATACATAAAG+AGG - chr5.2:60509595-60509614 None:intergenic 35.0%
! GGATGATAATGAGCTACAAA+TGG - chr5.2:60511132-60511151 None:intergenic 35.0%
! GGGTGCTTTCATTTATCTTT+TGG + chr5.2:60509662-60509681 MS.gene50194:CDS 35.0%
! TCAGTATTTTCAGCAGTTTC+AGG + chr5.2:60511538-60511557 MS.gene50194:intron 35.0%
! TCATTTTCCCTAAATGTGTG+AGG - chr5.2:60513135-60513154 None:intergenic 35.0%
! TGAAAGATTAGTCATCAGCA+GGG + chr5.2:60513693-60513712 MS.gene50194:CDS 35.0%
! TTCCTATGTGTTACTGTCTT+AGG + chr5.2:60512259-60512278 MS.gene50194:intron 35.0%
! TTTAGGTTTCTCAAAACCAC+TGG + chr5.2:60511863-60511882 MS.gene50194:CDS 35.0%
! TTTCTGCAGAAGCTGTATTT+TGG + chr5.2:60512619-60512638 MS.gene50194:intron 35.0%
!! ATTTTGGCCAGTTTTCATAG+TGG + chr5.2:60512635-60512654 MS.gene50194:CDS 35.0%
!! CATAAAGAGGAGAAGTACTT+AGG - chr5.2:60509582-60509601 None:intergenic 35.0%
!! GGTTGATAAAGTTATGTTGG+TGG + chr5.2:60512094-60512113 MS.gene50194:intron 35.0%
!! TGCCTGATTTTGGCATATAT+GGG + chr5.2:60512450-60512469 MS.gene50194:CDS 35.0%
!! TGTTCTTTGAAAAGCATCCT+AGG + chr5.2:60510580-60510599 MS.gene50194:CDS 35.0%
!! TTCTTTGCTAGAAGTTGGTA+TGG + chr5.2:60514191-60514210 MS.gene50194:CDS 35.0%
!!! ATGTTTTCATTTTTGGTCCC+TGG - chr5.2:60511250-60511269 None:intergenic 35.0%
!!! TGATTTTTTTGCCTCTGCAT+AGG - chr5.2:60514076-60514095 None:intergenic 35.0%
AAAGTGGCCACTATGAAAAC+TGG - chr5.2:60512645-60512664 None:intergenic 40.0%
AAATGGCATGAACATCAGCA+CGG - chr5.2:60511115-60511134 None:intergenic 40.0%
AAGTGAATTCTTGCCTGGTA+TGG - chr5.2:60512532-60512551 None:intergenic 40.0%
ACTCTAGCATACCAAAGTCT+TGG + chr5.2:60509541-60509560 MS.gene50194:CDS 40.0%
ACTGCTGATCTTTGTTCTGT+TGG + chr5.2:60510614-60510633 MS.gene50194:CDS 40.0%
ACTTGCATGACAATTGGTGA+TGG + chr5.2:60510639-60510658 MS.gene50194:CDS 40.0%
AGAACAAGGAATATCTCACC+AGG + chr5.2:60509396-60509415 MS.gene50194:CDS 40.0%
AGGATGGTCATATACCGAAA+CGG - chr5.2:60511504-60511523 None:intergenic 40.0%
AGTATATCGTGCACTTTCTC+CGG + chr5.2:60511832-60511851 MS.gene50194:CDS 40.0%
AGTTTCTACAAAGCCATACC+AGG + chr5.2:60512516-60512535 MS.gene50194:CDS 40.0%
ATATACCGAAACGGACAAAC+AGG - chr5.2:60511495-60511514 None:intergenic 40.0%
ATGGTTGTCATTAAGTGGAG+TGG + chr5.2:60511895-60511914 MS.gene50194:CDS 40.0%
ATGTGTTCCATGATGCTGAA+TGG - chr5.2:60511720-60511739 None:intergenic 40.0%
CAAAGTCTTGGAGTAGTCTA+TGG + chr5.2:60509553-60509572 MS.gene50194:CDS 40.0%
CAACTGTGACAGCTAAACAA+AGG - chr5.2:60512827-60512846 None:intergenic 40.0%
CACCCATATATGCCAAAATC+AGG - chr5.2:60512455-60512474 None:intergenic 40.0%
CACCTAAGACAGTAACACAT+AGG - chr5.2:60512264-60512283 None:intergenic 40.0%
CATAGACTACTCCAAGACTT+TGG - chr5.2:60509555-60509574 None:intergenic 40.0%
CATGATGCTGAATGGAGAAA+AGG - chr5.2:60511712-60511731 None:intergenic 40.0%
CGTGGCATAACTATTCTACA+TGG - chr5.2:60510995-60511014 None:intergenic 40.0%
CTGCAATGACTCGACTTTAT+AGG - chr5.2:60514007-60514026 None:intergenic 40.0%
CTGCTGATCTTTGTTCTGTT+GGG + chr5.2:60510615-60510634 MS.gene50194:CDS 40.0%
GAAATGAGACACGAAAAGGA+TGG - chr5.2:60511520-60511539 None:intergenic 40.0%
GAAGGATGGTTGTCATTAAG+TGG + chr5.2:60511890-60511909 MS.gene50194:CDS 40.0%
GAATTTACCAGCATTCCATC+AGG + chr5.2:60513618-60513637 MS.gene50194:CDS 40.0%
GAGACAATGTATGCTGACAT+GGG + chr5.2:60512286-60512305 MS.gene50194:CDS 40.0%
GATCAACTACCTGATATTGC+AGG - chr5.2:60510675-60510694 None:intergenic 40.0%
GATTACGCCTCACACATTTA+GGG + chr5.2:60513125-60513144 MS.gene50194:intron 40.0%
GCAATATCAGGTAGTTGATC+AGG + chr5.2:60510675-60510694 MS.gene50194:intron 40.0%
GTATACAAGACCTCATTCTC+AGG + chr5.2:60509601-60509620 MS.gene50194:CDS 40.0%
GTCATGTCTGCTGATGATAA+TGG + chr5.2:60509724-60509743 MS.gene50194:CDS 40.0%
GTGTGAACAATCTTCACTCT+AGG - chr5.2:60512747-60512766 None:intergenic 40.0%
TAAAAACGAGGAGATAGACG+TGG + chr5.2:60511071-60511090 MS.gene50194:intron 40.0%
TACTTGTGCAACAAGTAACC+CGG - chr5.2:60510770-60510789 None:intergenic 40.0%
TATGACCTTAACATCAGCTC+CGG + chr5.2:60510748-60510767 MS.gene50194:intron 40.0%
TCTTGGCCATCACATGAAAA+TGG - chr5.2:60513970-60513989 None:intergenic 40.0%
TGATTACGCCTCACACATTT+AGG + chr5.2:60513124-60513143 MS.gene50194:intron 40.0%
TGCACAAGTAAAAGGGAGTT+TGG + chr5.2:60510780-60510799 MS.gene50194:intron 40.0%
TTATCCTTAGGACCATGCTT+AGG + chr5.2:60513514-60513533 MS.gene50194:CDS 40.0%
TTCAGTTATTGTACTGCAGG+AGG + chr5.2:60510420-60510439 MS.gene50194:intron 40.0%
TTGGGAACTTGCATGACAAT+TGG + chr5.2:60510633-60510652 MS.gene50194:CDS 40.0%
! AGTATATCCGTGCCTGATTT+TGG + chr5.2:60512440-60512459 MS.gene50194:CDS 40.0%
! ATGTGTTACTGTCTTAGGTG+TGG + chr5.2:60512264-60512283 MS.gene50194:intron 40.0%
! CTTTGTTTAGCTGTCACAGT+TGG + chr5.2:60512825-60512844 MS.gene50194:CDS 40.0%
! CTTTTCTCCATTCAGCATCA+TGG + chr5.2:60511710-60511729 MS.gene50194:CDS 40.0%
! GACAGAACCTCACACATTTT+AGG - chr5.2:60512931-60512950 None:intergenic 40.0%
! GCTCAATTTTCCTGAGAATG+AGG - chr5.2:60509614-60509633 None:intergenic 40.0%
! GTGAAAGATTAGTCATCAGC+AGG + chr5.2:60513692-60513711 MS.gene50194:CDS 40.0%
! TCATCTGTTGGTTGCTGATT+TGG - chr5.2:60510498-60510517 None:intergenic 40.0%
! TTTCGGTGCATTGTTCGATA+CGG + chr5.2:60513739-60513758 MS.gene50194:CDS 40.0%
! TTTTACAGAGAGGACCATCT+TGG + chr5.2:60510160-60510179 MS.gene50194:intron 40.0%
!! AACATGATGGGTCATGCATA+TGG + chr5.2:60512861-60512880 MS.gene50194:CDS 40.0%
!! GATTTTGGCATATATGGGTG+AGG + chr5.2:60512455-60512474 MS.gene50194:CDS 40.0%
!! GTGCCTGATTTTGGCATATA+TGG + chr5.2:60512449-60512468 MS.gene50194:CDS 40.0%
!! TCTGCTGATGATAATGGAGA+AGG + chr5.2:60509730-60509749 MS.gene50194:CDS 40.0%
!!! CTTTTCTTGGTTTGTAGGGT+TGG + chr5.2:60513216-60513235 MS.gene50194:intron 40.0%
!!! TCCAATGTGGTTTTGACATG+TGG + chr5.2:60511149-60511168 MS.gene50194:intron 40.0%
AAAAGCCATGCTGCAACAAC+TGG - chr5.2:60511764-60511783 None:intergenic 45.0%
AAAGCCATGCTGCAACAACT+GGG - chr5.2:60511763-60511782 None:intergenic 45.0%
AACAACTGGGGCAAACATGA+AGG - chr5.2:60511750-60511769 None:intergenic 45.0%
AAGCATCCTAGGTTCCAGAA+AGG + chr5.2:60510591-60510610 MS.gene50194:CDS 45.0%
ACACACCATCATTTCCACGT+AGG - chr5.2:60511184-60511203 None:intergenic 45.0%
ACTAAACTGCGTTCAGTAGG+TGG + chr5.2:60511956-60511975 MS.gene50194:intron 45.0%
ACTAACACCTGATGGAATGC+TGG - chr5.2:60513628-60513647 None:intergenic 45.0%
ATGACCTTAACATCAGCTCC+GGG + chr5.2:60510749-60510768 MS.gene50194:intron 45.0%
CAAAGATCAGCAGTCCTTTC+TGG - chr5.2:60510608-60510627 None:intergenic 45.0%
CAGAAAGTTGACACTACGGA+CGG - chr5.2:60510928-60510947 None:intergenic 45.0%
CAGAGGATTCTGCTGATACA+TGG + chr5.2:60510538-60510557 MS.gene50194:CDS 45.0%
CCACAAATTTGGAAGTGGTC+TGG - chr5.2:60512076-60512095 None:intergenic 45.0%
CCAGACCACTTCCAAATTTG+TGG + chr5.2:60512073-60512092 MS.gene50194:intron 45.0%
CTGTACCTGTTTGTCCGTTT+CGG + chr5.2:60511487-60511506 MS.gene50194:intron 45.0%
GCCACATGTCAAAACCACAT+TGG - chr5.2:60511153-60511172 None:intergenic 45.0%
GGAGACAATGTATGCTGACA+TGG + chr5.2:60512285-60512304 MS.gene50194:CDS 45.0%
GGAGTGGTGCTTTCAATAAC+AGG + chr5.2:60511911-60511930 MS.gene50194:CDS 45.0%
GTCATCCTACGTGGAAATGA+TGG + chr5.2:60511176-60511195 MS.gene50194:intron 45.0%
GTGATCACTCCTGCAATATC+AGG + chr5.2:60510663-60510682 MS.gene50194:CDS 45.0%
TAAACCGAAAGTTGACGCCA+GGG + chr5.2:60511230-60511249 MS.gene50194:intron 45.0%
TAATCTTGCTTCCGGTATCC+CGG + chr5.2:60513573-60513592 MS.gene50194:CDS 45.0%
TCCTACAACAGCAGCAAAAG+TGG - chr5.2:60512661-60512680 None:intergenic 45.0%
TCTGTCTGCAAAATCCCTGA+AGG + chr5.2:60513373-60513392 MS.gene50194:CDS 45.0%
TGCGTTCAGTAGGTGGTTAA+TGG + chr5.2:60511963-60511982 MS.gene50194:intron 45.0%
TTAAACCGAAAGTTGACGCC+AGG + chr5.2:60511229-60511248 MS.gene50194:intron 45.0%
TTGGCTTACTGTCATGGAGT+TGG - chr5.2:60511582-60511601 None:intergenic 45.0%
! AAACCACTGGCATTGAAGGA+TGG + chr5.2:60511876-60511895 MS.gene50194:CDS 45.0%
! AGATTAGTCATCAGCAGGGT+TGG + chr5.2:60513697-60513716 MS.gene50194:CDS 45.0%
! CTCAAAACCACTGGCATTGA+AGG + chr5.2:60511872-60511891 MS.gene50194:CDS 45.0%
! CTGAAAATGAGACCGATTCC+CGG - chr5.2:60513553-60513572 None:intergenic 45.0%
! GCATGGCTTTTGTGTATCAG+TGG + chr5.2:60511773-60511792 MS.gene50194:CDS 45.0%
! TGAAAATGAGACCGATTCCC+GGG - chr5.2:60513552-60513571 None:intergenic 45.0%
! TGTAGCGGAATATGTTCGGT+TGG - chr5.2:60511601-60511620 None:intergenic 45.0%
!! GATATACTTGTCGGTTCCAC+CGG - chr5.2:60511820-60511839 None:intergenic 45.0%
AAGCCATGCTGCAACAACTG+GGG - chr5.2:60511762-60511781 None:intergenic 50.0%
ACACGTACCATGCCTAAGCA+TGG - chr5.2:60513529-60513548 None:intergenic 50.0%
ACCGAAAATAGCCGGGATAC+CGG - chr5.2:60513587-60513606 None:intergenic 50.0%
ACGTGTCAACACCACCACAT+CGG + chr5.2:60511012-60511031 MS.gene50194:intron 50.0%
AGGACTCGTCTCGAAGTTCT+TGG - chr5.2:60513987-60514006 None:intergenic 50.0%
AGTTGGGCATTCCTATGCAG+AGG + chr5.2:60514062-60514081 MS.gene50194:CDS 50.0%
CAACCATCCTTCAATGCCAG+TGG - chr5.2:60511882-60511901 None:intergenic 50.0%
CATGCCTAAGCATGGTCCTA+AGG - chr5.2:60513521-60513540 None:intergenic 50.0%
CTTAGGACCATGCTTAGGCA+TGG + chr5.2:60513519-60513538 MS.gene50194:CDS 50.0%
GTAACCCGGAGCTGATGTTA+AGG - chr5.2:60510756-60510775 None:intergenic 50.0%
GTCTGCAAAATCCCTGAAGG+CGG + chr5.2:60513376-60513395 MS.gene50194:CDS 50.0%
TCTGCAAAATCCCTGAAGGC+GGG + chr5.2:60513377-60513396 MS.gene50194:CDS 50.0%
TGTGGCATTGTCATCCTACG+TGG + chr5.2:60511167-60511186 MS.gene50194:intron 50.0%
! TGTGTCACTATCACCCGATG+TGG - chr5.2:60511029-60511048 None:intergenic 50.0%
!! AGCAGTCCTTTCTGGAACCT+AGG - chr5.2:60510600-60510619 None:intergenic 50.0%
!! GTTCGGTTGGCTTACTGTCA+TGG - chr5.2:60511588-60511607 None:intergenic 50.0%
!! TCCGGTATCCCGGCTATTTT+CGG + chr5.2:60513583-60513602 MS.gene50194:CDS 50.0%
!!! GCCACTTTTGCTGCTGTTGT+AGG + chr5.2:60512657-60512676 MS.gene50194:CDS 50.0%
ATGGTACGTGTCCCGGGAAT+CGG + chr5.2:60513538-60513557 MS.gene50194:CDS 55.0%
CGTGGCATATCAGCTCCATG+TGG + chr5.2:60511089-60511108 MS.gene50194:intron 55.0%
CGTGTCAACACCACCACATC+GGG + chr5.2:60511013-60511032 MS.gene50194:intron 55.0%
CTTAGGCATGGTACGTGTCC+CGG + chr5.2:60513531-60513550 MS.gene50194:CDS 55.0%
GTCACTATCACCCGATGTGG+TGG - chr5.2:60511026-60511045 None:intergenic 55.0%
TGAACATCAGCACGGCCACA+TGG - chr5.2:60511107-60511126 None:intergenic 55.0%
TGGTCCCTGGCGTCAACTTT+CGG - chr5.2:60511237-60511256 None:intergenic 55.0%
TTAGGCATGGTACGTGTCCC+GGG + chr5.2:60513532-60513551 MS.gene50194:CDS 55.0%
TTGCCCCAGTTGTTGCAGCA+TGG + chr5.2:60511756-60511775 MS.gene50194:CDS 55.0%
!! GATGTGGTGGTGTTGACACG+TGG - chr5.2:60511013-60511032 None:intergenic 55.0%
ATTGGGATCCACCCGCCTTC+AGG - chr5.2:60513391-60513410 None:intergenic 60.0%
GCAAAATCCCTGAAGGCGGG+TGG + chr5.2:60513380-60513399 MS.gene50194:CDS 60.0%
TTGGGATCCACCCGCCTTCA+GGG - chr5.2:60513390-60513409 None:intergenic 60.0%
!! CATCAGCAGGGTTGGTCCGA+AGG + chr5.2:60513705-60513724 MS.gene50194:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 60509373 60514227 60509373 ID=MS.gene50194
chr5.2 mRNA 60509373 60514227 60509373 ID=MS.gene50194.t1;Parent=MS.gene50194
chr5.2 exon 60509373 60509417 60509373 ID=MS.gene50194.t1.exon1;Parent=MS.gene50194.t1
chr5.2 CDS 60509373 60509417 60509373 ID=cds.MS.gene50194.t1;Parent=MS.gene50194.t1
chr5.2 exon 60509508 60509751 60509508 ID=MS.gene50194.t1.exon2;Parent=MS.gene50194.t1
chr5.2 CDS 60509508 60509751 60509508 ID=cds.MS.gene50194.t1;Parent=MS.gene50194.t1
chr5.2 exon 60510439 60510684 60510439 ID=MS.gene50194.t1.exon3;Parent=MS.gene50194.t1
chr5.2 CDS 60510439 60510684 60510439 ID=cds.MS.gene50194.t1;Parent=MS.gene50194.t1
chr5.2 exon 60511542 60511592 60511542 ID=MS.gene50194.t1.exon4;Parent=MS.gene50194.t1
chr5.2 CDS 60511542 60511592 60511542 ID=cds.MS.gene50194.t1;Parent=MS.gene50194.t1
chr5.2 exon 60511672 60511932 60511672 ID=MS.gene50194.t1.exon5;Parent=MS.gene50194.t1
chr5.2 CDS 60511672 60511932 60511672 ID=cds.MS.gene50194.t1;Parent=MS.gene50194.t1
chr5.2 exon 60512281 60512333 60512281 ID=MS.gene50194.t1.exon6;Parent=MS.gene50194.t1
chr5.2 CDS 60512281 60512333 60512281 ID=cds.MS.gene50194.t1;Parent=MS.gene50194.t1
chr5.2 exon 60512423 60512537 60512423 ID=MS.gene50194.t1.exon7;Parent=MS.gene50194.t1
chr5.2 CDS 60512423 60512537 60512423 ID=cds.MS.gene50194.t1;Parent=MS.gene50194.t1
chr5.2 exon 60512628 60512882 60512628 ID=MS.gene50194.t1.exon8;Parent=MS.gene50194.t1
chr5.2 CDS 60512628 60512882 60512628 ID=cds.MS.gene50194.t1;Parent=MS.gene50194.t1
chr5.2 exon 60513233 60514227 60513233 ID=MS.gene50194.t1.exon9;Parent=MS.gene50194.t1
chr5.2 CDS 60513233 60514227 60513233 ID=cds.MS.gene50194.t1;Parent=MS.gene50194.t1
Gene Sequence

>MS.gene50194

ATGAATCCTTCTCAGCAATTTGTAGAACAAGGAATATCTCACCAGGTACTCATTTTCTTGCATTTCAAATATGAAATTGTGTATACTATATATCTATTATTAATCTCTTATGCTTGGTTTCATTTCATGTATCAGAATTTAAAGAGGACATCTTGTGCAAATGTGCTGACTCTAGCATACCAAAGTCTTGGAGTAGTCTATGGTGACCTAAGTACTTCTCCTCTTTATGTATACAAGACCTCATTCTCAGGAAAATTGAGCCTTAAAGAAGATGATGAAGAAATTTTTGGGGTGCTTTCATTTATCTTTTGGACATTTACTATTATTGCTCTCTTCAAATATGTTTTCATTGTCATGTCTGCTGATGATAATGGAGAAGGTACAATCTTCAATCATTGATGATGGTACTTTTGGCGTGTTTCTTTTCAATTCCTTTGGATTTTAAGCTGCTTAAGTCAACTCAATTATATCTACTCATCAAGGACACAATTTTTATGATCACATTATTATTCAGCCAAAACTCATATAAAGGACATTTGGATATTTTTGCTTTACCATATAAATAAAATGATGACAGAAGCATTGTATATTCTGTCATTTGTTCTTTTTGAATTTATATAATTTGTATCAGCCATAATTTTCCTTCTCTGTCTTGATGTCTAATATGATTACTTAATTAATTGATAACTATTTGAAGATTAATTTTAGACTTTATACTTTTGGTTTCTTTTCTTTATTTTAGGTTTCAATTTGGTCACTTTTTTTTTGGTAATGAAATTGTTATTTGTTTTACAGAGAGGACCATCTTGGTATAGCTTTTACAAAATAATAATGGATAGTTTTGGAATTTAAAATGGACAAATTTAATGTAAATTTTGGAACAAAAAATAAAAATGGAACACATTGTTATAAATGAAACCATTTTGGAATAAATAGTTACATCTTATACAAATCAAAAGAAATCTCTTTGGCTCATGAGCATCTAAAAATTTCTTTCTTATGTTTCTTAATTAGGATAATTAGTTAAACCATTGTTAGAATCAATTGTTCAGTTATTGTACTGCAGGAGGCACCTTTGCATTATACTCACTTCTCTGCAGACATGCAAGACTAAGCATTTTGCCAAATCAGCAACCAACAGATGAGAATTTATCTGCTTATTCAACAGAGGATTCTGCTGATACATGGCAATCTTCTCTTTTGAAGCTGTTCTTTGAAAAGCATCCTAGGTTCCAGAAAGGACTGCTGATCTTTGTTCTGTTGGGAACTTGCATGACAATTGGTGATGGTGTGATCACTCCTGCAATATCAGGTAGTTGATCAGGGGCATCCCTTCAGATTCTATTATGATGTTTACTTCATGATTCCTGTAAGCTATGACCTTAACATCAGCTCCGGGTTACTTGTTGCACAAGTAAAAGGGAGTTTGGTCTTGTAAAAAACTGAATGGTTTAAATGTGTTTTGTCCCCATAAATAGAGCGAATTTTAGTTTTAGTCCCTATAAATACCTTTTTCTTTTCTTTTCATCCTTAAAAAATCATGTATTTGAGTCCGTCCGTAGTGTCAACTTTCTGTTTATAATAACTAACGTGGAAAATACAAGTAAATGACATCCGTTCCATGTAGAATAGTTATGCCACGTGTCAACACCACCACATCGGGTGATAGTGACACATCAACACTAATGAACATGTTAGTAAAAACGAGGAGATAGACGTGGCATATCAGCTCCATGTGGCCGTGCTGATGTTCATGCCATTTGTAGCTCATTATCATCCAATGTGGTTTTGACATGTGGCATTGTCATCCTACGTGGAAATGATGGTGTGTACCTCTGTTTACACCATTAGCTTTTTTAAACCGAAAGTTGACGCCAGGGACCAAAAATGAAAACATTTGATTTTGCAAGGACTAACCATAATATTTTAAACCAAAAAGAATTATGCTGTCCATCATTAGCAATGTCACAGATACACATATGCATTCCTTAAATTGTAACTTTAGCTGATTACTAATTGCTAGAATTCATTATTTCTCATTAATGTGATTAGACAAAAGCACATTTCAGAATAAATAATTGCACCGTTTCAAGAGTTGATCCTTATACAAAGTTCTGTACCTGTTTGTCCGTTTCGGTATATGACCATCCTTTTCGTGTCTCATTTCAGTATTTTCAGCAGTTTCAGGAGTTCAAGTTAAGATCAACCAACTCCATGACAGTAAGCCAACCGAACATATTCCGCTACATTATGTCTATTCAATGCATAATTGTAAAACTCTACATTATGTATTGTGCAGATTATGTTGTTATAGTCTCATGTATCATTTTAGTTGGCCTTTTCTCCATTCAGCATCATGGAACACATAGAGTTTCCTTCATGTTTGCCCCAGTTGTTGCAGCATGGCTTTTGTGTATCAGTGGTATTGGTATATACAATATATTCCGGTGGAACCGACAAGTATATCGTGCACTTTCTCCGGTCTATATGTTTAGGTTTCTCAAAACCACTGGCATTGAAGGATGGTTGTCATTAAGTGGAGTGGTGCTTTCAATAACAGGTACCTATAAGTTAGTCAGTTTTACTAAACTGCGTTCAGTAGGTGGTTAATGGATATAGCATATTGTCAAAACTCATTGACCATCAATGTAACTTCACTAACCACAAATTTGTATGTAATTAACTAAAAATTATGATGGACCAGACCACTTCCAAATTTGTGGTTGATAAAGTTATGTTGGTGGTTAATAAGTTTCGACACCTGATATATCTATTAATCATCTATTATTGAACTATGTTAACCACTTAAAAAGGTCAAGAAGATTGTCTAAATTTGGTTGTACAACAAATCATTTCTGTATCAGCTAATGAGCTATGAGATTAAATTTCCTATGTGTTACTGTCTTAGGTGTGGAGACAATGTATGCTGACATGGGTCATTTTTCTGCACTCTCAATAAAGGTAAATTAAAAGTATACAATGTTGGTCCAAGTATATTAGTCTAGCATACAAAAATGAAATCTGATTTAACAGTTACACTTAAATCTCAGATAGCTTTCACATGTTTAGTATATCCGTGCCTGATTTTGGCATATATGGGTGAGGCTGCATTTCTCTCTAAGCACCATTATGACATTGAGAGAAGTTTCTACAAAGCCATACCAGGCAAGAATTCACTTTAAGAAACCACAAAAATATCGATATTATTTATGATAACCACTATTTTTCACTTTAAGCCATACTATTTTTCTGCAGAAGCTGTATTTTGGCCAGTTTTCATAGTGGCCACTTTTGCTGCTGTTGTAGGAAGTCAAGCAGTGATTTCTGCAACTTTTTCAATCATAAGCCAATGCTGCGCATTAAATTGTTTTCCTAGAGTGAAGATTGTTCACACTTCTAGCAAAATATATGGACAGATTTATGTTCCAGAAATCAATTGGATATTAATGTGCCTTTGTTTAGCTGTCACAGTTGGCCTTAGAGATACAAACATGATGGGTCATGCATATGGTACAATACCCTTTTCCAGTGTTTAGATTAAACGGTCATTTTTATCCTAAAATGTGTGAGGTTCTGTCACAATAGTCTTCATCAAATGTAAAACTACATAAATACGTCTTTCATTAGTCCGTTTCTTCATAATTAGTTTAGTTCTTGAATGTGTCTTCAAGTAGTCAATTAGTTCCAAAAAATTACAAACAAAAGACATGTTAGGGATATTTTTGTAATTCGGATACAATCCTTAGTATATTGATTACGCCTCACACATTTAGGGAAAATGACTGTTTATTCTTATATTTACTCATTATGATACTTGAAGTATGGAAAACTAAATTTAAACTACTTTTCTTGGTTTGTAGGGTTGGCTATCACCACTGTTATGTTTGTGACAACATGTTTGATGACGCTAGTAATTATAATTGTTTGGAAACAAGGGATAATAAAAGCACTTACATGTTTCCTATTGTTTGGATCTATTGAACTTCTTTACATCTCAGCTTCTGTCTGCAAAATCCCTGAAGGCGGGTGGATCCCAATTTCGCTATCTTTCATTTTTATGGCCATAATGTTCACATGGAACTATGGAACAATGAAGAAACACCAATTTGATGTTGAAAACAAGGTCTCAATGAGCAAGATGTTATCCTTAGGACCATGCTTAGGCATGGTACGTGTCCCGGGAATCGGTCTCATTTTCAGTAATCTTGCTTCCGGTATCCCGGCTATTTTCGGTCATTTTATTACGAATTTACCAGCATTCCATCAGGTGTTAGTTTTTGTATGTGCTAAATCAGTTCAAGTCCCTTATGTCAGTGAAAGTGAAAGATTAGTCATCAGCAGGGTTGGTCCGAAGGAATTCTACATGTTTCGGTGCATTGTTCGATACGGATACAAAGACATGCAACAAGAGAATTACAATTTTGATAATAAGTTGGTATCTGCAATAATACAGTTTATAGAAATAGAAGACAGTGTTCCAGAACAAACAAATGAATTGACTATAGATGATGGAAGAAACTTAAATATGGAAGATCTTGGTGGTTCACAACACACTTTGAAATTGAATTGGTCACATTCTGAAAATAATTGTTTACCATTTTCATGTGATGGCCAAGAACTTCGAGACGAGTCCTATAAAGTCGAGTCATTGCAGATTTTAAAAGCCAAAGAATCAGGTGTTACTTATATAGTTGGGCATTCCTATGCAGAGGCAAAAAAATCATCTTCCATTTTAAAGAAATTTGGAATAGATGTCGTTTATGCTTTTCTAAGCAAAAATTGCAGAGAACCTGATATTATGTTGGAAGTAGCTCATACTTCTTTGCTAGAAGTTGGTATGGTATACCATGTCTAA
Protein sequence

>MS.gene50194.t1

MNPSQQFVEQGISHQNLKRTSCANVLTLAYQSLGVVYGDLSTSPLYVYKTSFSGKLSLKEDDEEIFGVLSFIFWTFTIIALFKYVFIVMSADDNGEGGTFALYSLLCRHARLSILPNQQPTDENLSAYSTEDSADTWQSSLLKLFFEKHPRFQKGLLIFVLLGTCMTIGDGVITPAISVFSAVSGVQVKINQLHDNYVVIVSCIILVGLFSIQHHGTHRVSFMFAPVVAAWLLCISGIGIYNIFRWNRQVYRALSPVYMFRFLKTTGIEGWLSLSGVVLSITGVETMYADMGHFSALSIKIAFTCLVYPCLILAYMGEAAFLSKHHYDIERSFYKAIPEAVFWPVFIVATFAAVVGSQAVISATFSIISQCCALNCFPRVKIVHTSSKIYGQIYVPEINWILMCLCLAVTVGLRDTNMMGHAYGLAITTVMFVTTCLMTLVIIIVWKQGIIKALTCFLLFGSIELLYISASVCKIPEGGWIPISLSFIFMAIMFTWNYGTMKKHQFDVENKVSMSKMLSLGPCLGMVRVPGIGLIFSNLASGIPAIFGHFITNLPAFHQVLVFVCAKSVQVPYVSESERLVISRVGPKEFYMFRCIVRYGYKDMQQENYNFDNKLVSAIIQFIEIEDSVPEQTNELTIDDGRNLNMEDLGGSQHTLKLNWSHSENNCLPFSCDGQELRDESYKVESLQILKAKESGVTYIVGHSYAEAKKSSSILKKFGIDVVYAFLSKNCREPDIMLEVAHTSLLEVGMVYHV