Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50210.t1 | XP_024640995.1 | 95.1 | 426 | 21 | 0 | 1 | 426 | 1 | 426 | 2.10E-237 | 831.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50210.t1 | Q9FH50 | 62.2 | 386 | 118 | 4 | 43 | 426 | 43 | 402 | 5.9e-140 | 498.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50210.t1 | A0A396HTC3 | 95.1 | 426 | 21 | 0 | 1 | 426 | 1 | 426 | 1.5e-237 | 831.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50210 | MS.gene060083 | PPI |
| MS.gene50210 | MS.gene80300 | PPI |
| MS.gene50210 | MS.gene59283 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50210.t1 | MTR_5g072520 | 96.284 | 296 | 11 | 0 | 130 | 425 | 1 | 296 | 0.0 | 607 |
| MS.gene50210.t1 | MTR_2g088390 | 45.082 | 366 | 177 | 6 | 53 | 417 | 95 | 437 | 1.24e-102 | 312 |
| MS.gene50210.t1 | MTR_2g067610 | 45.748 | 341 | 161 | 4 | 78 | 417 | 2 | 319 | 7.20e-101 | 303 |
| MS.gene50210.t1 | MTR_6g059930 | 43.529 | 340 | 172 | 3 | 87 | 426 | 100 | 419 | 1.55e-96 | 296 |
| MS.gene50210.t1 | MTR_6g059930 | 43.529 | 340 | 172 | 3 | 87 | 426 | 132 | 451 | 6.27e-96 | 295 |
| MS.gene50210.t1 | MTR_2g088750 | 31.395 | 344 | 184 | 6 | 75 | 416 | 34 | 327 | 7.89e-51 | 175 |
| MS.gene50210.t1 | MTR_1g054885 | 55.844 | 77 | 32 | 2 | 346 | 421 | 2 | 77 | 2.15e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50210.t1 | AT5G61930 | 59.277 | 415 | 138 | 6 | 14 | 426 | 17 | 402 | 5.25e-176 | 498 |
| MS.gene50210.t1 | AT5G61930 | 59.277 | 415 | 138 | 6 | 14 | 426 | 17 | 402 | 5.25e-176 | 498 |
| MS.gene50210.t1 | AT1G64810 | 39.529 | 382 | 211 | 6 | 45 | 426 | 75 | 436 | 1.60e-95 | 294 |
| MS.gene50210.t1 | AT1G64810 | 39.529 | 382 | 211 | 6 | 45 | 426 | 99 | 460 | 3.54e-95 | 293 |
| MS.gene50210.t1 | AT5G57930 | 43.014 | 365 | 185 | 7 | 53 | 417 | 89 | 430 | 9.34e-94 | 289 |
| MS.gene50210.t1 | AT5G57930 | 43.014 | 365 | 185 | 7 | 53 | 417 | 92 | 433 | 1.11e-93 | 289 |
| MS.gene50210.t1 | AT3G21740 | 31.562 | 320 | 162 | 7 | 95 | 411 | 55 | 320 | 2.33e-44 | 157 |
| MS.gene50210.t1 | AT3G21740 | 26.380 | 163 | 115 | 2 | 246 | 405 | 13 | 173 | 2.82e-13 | 70.9 |
Find 116 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACATGCCAGACAAAATT+TGG | 0.212731 | 5.2:+60831367 | None:intergenic |
| TCATACAAATGAAAGCATTT+TGG | 0.218138 | 5.2:+60831940 | None:intergenic |
| GCCAGAGGGTTTCTACTTTC+CGG | 0.228283 | 5.2:-60832793 | MS.gene50210:CDS |
| ACGAAGAAACGAACAAATTA+AGG | 0.236547 | 5.2:-60831603 | MS.gene50210:CDS |
| AACAATCTCAAGAGATATTA+TGG | 0.273139 | 5.2:-60831319 | MS.gene50210:CDS |
| GGCGGTGGGAGAGGCGGTTT+AGG | 0.307688 | 5.2:+60833079 | None:intergenic |
| GCGGTTTAGGAGAGGGAGTT+GGG | 0.309878 | 5.2:+60833092 | None:intergenic |
| AGGTCAACTTCATCTCGTTC+TGG | 0.313030 | 5.2:+60831205 | None:intergenic |
| TGGATATTGTCCCGAGGTTC+AGG | 0.317504 | 5.2:-60831494 | MS.gene50210:CDS |
| GGGTTGGGTACGTCGGAGTA+TGG | 0.330870 | 5.2:+60832991 | None:intergenic |
| CTTGCAATCAAAACTTTCAT+TGG | 0.334453 | 5.2:+60832931 | None:intergenic |
| GGCGCAGCCGTGTAGAGTTC+TGG | 0.336878 | 5.2:-60832881 | MS.gene50210:CDS |
| TGGAGGTGAGGCGGTGGGAG+AGG | 0.337769 | 5.2:+60833070 | None:intergenic |
| GGCGGTTTAGGAGAGGGAGT+TGG | 0.345695 | 5.2:+60833091 | None:intergenic |
| GTGGAACTCTGTGTGCAAGC+TGG | 0.348879 | 5.2:-60831280 | MS.gene50210:CDS |
| GCAACTAGTTCGAGTTATTC+CGG | 0.349413 | 5.2:-60832764 | MS.gene50210:CDS |
| AGAGGGTGGAGGTGAGGCGG+TGG | 0.349650 | 5.2:+60833064 | None:intergenic |
| TGGAACTCTGTGTGCAAGCT+GGG | 0.351116 | 5.2:-60831279 | MS.gene50210:CDS |
| GGAGTATGGGAATGCGTTGT+TGG | 0.353172 | 5.2:+60833005 | None:intergenic |
| ATATAGGACGAATCAGTTAA+AGG | 0.355798 | 5.2:+60831697 | None:intergenic |
| CTTCCTTCAATGCAATATAC+AGG | 0.382313 | 5.2:+60831790 | None:intergenic |
| GCACTCCGCAGCCAACTCTT+TGG | 0.384257 | 5.2:+60832009 | None:intergenic |
| GCATACTCGCAGCGCAAAAC+CGG | 0.389839 | 5.2:+60832745 | None:intergenic |
| TGGCATGTTGAGGATCTAAA+TGG | 0.402232 | 5.2:-60831355 | MS.gene50210:CDS |
| CGAGGTTCAGGTTGGTCCTA+AGG | 0.411197 | 5.2:-60831482 | MS.gene50210:CDS |
| GGTCAACTTCATCTCGTTCT+GGG | 0.412824 | 5.2:+60831206 | None:intergenic |
| TCATGGTTTGAGATGATATC+AGG | 0.413415 | 5.2:-60831556 | MS.gene50210:CDS |
| AAACCTGTATATTGCATTGA+AGG | 0.421348 | 5.2:-60831793 | MS.gene50210:CDS |
| CGAGGTTCACATTGGTTATG+TGG | 0.428357 | 5.2:-60832058 | MS.gene50210:CDS |
| ATCATGCTCTTATATTGATC+AGG | 0.430628 | 5.2:+60831247 | None:intergenic |
| CTCTTATATTGATCAGGAAC+TGG | 0.436806 | 5.2:+60831253 | None:intergenic |
| CTCTCATCATGCCCAACTCT+TGG | 0.445462 | 5.2:+60831904 | None:intergenic |
| GTGCAACTCATGTTTGGAAA+AGG | 0.445801 | 5.2:-60831990 | MS.gene50210:CDS |
| GAGGGTGGAGGTGAGGCGGT+GGG | 0.451440 | 5.2:+60833065 | None:intergenic |
| CTGGAAGAGGCACCTGAGAA+TGG | 0.451862 | 5.2:-60832862 | MS.gene50210:CDS |
| TTGTATACAAAGTTCAACTA+TGG | 0.456978 | 5.2:+60831858 | None:intergenic |
| TGCGGAGTGCAACTCATGTT+TGG | 0.457274 | 5.2:-60831996 | MS.gene50210:CDS |
| GGGAATGCGTTGTTGGGATC+AGG | 0.461655 | 5.2:+60833012 | None:intergenic |
| CATGAAATTCGAACATGTAC+TGG | 0.464615 | 5.2:-60832033 | MS.gene50210:CDS |
| TGCAACTCATGTTTGGAAAA+GGG | 0.465316 | 5.2:-60831989 | MS.gene50210:CDS |
| ATTCTCAACTTATGTCCCTT+AGG | 0.465506 | 5.2:+60831466 | None:intergenic |
| GGCACAAGCAACCCATTCTC+AGG | 0.469315 | 5.2:+60832850 | None:intergenic |
| GAGTATGGGAATGCGTTGTT+GGG | 0.480250 | 5.2:+60833006 | None:intergenic |
| CGAAGAAACGAACAAATTAA+GGG | 0.482675 | 5.2:-60831602 | MS.gene50210:CDS |
| TCGAACTAGTTGCTTCAAAC+CGG | 0.485922 | 5.2:+60832774 | None:intergenic |
| GTTGCTTGTGCCTGAGCTTG+TGG | 0.486787 | 5.2:-60832839 | MS.gene50210:CDS |
| CTCGCAACTTCCACAAGCTC+AGG | 0.488137 | 5.2:+60832829 | None:intergenic |
| AGCGGAGAGAGAAGCACGAA+AGG | 0.489019 | 5.2:-60832902 | MS.gene50210:CDS |
| ATACAAAGTTCAACTATGGC+AGG | 0.503508 | 5.2:+60831862 | None:intergenic |
| CGTGTTGGCAAGCCAAGAGT+TGG | 0.505066 | 5.2:-60831916 | MS.gene50210:CDS |
| GTATACATACATTGGACTCA+TGG | 0.507148 | 5.2:-60831573 | MS.gene50210:CDS |
| ACTTTCATTGGCGTCACGTA+GGG | 0.513231 | 5.2:+60832943 | None:intergenic |
| CAACTCTTGGCTTGCCAACA+CGG | 0.513950 | 5.2:+60831917 | None:intergenic |
| TGGTAAGGCTCCTGCTGTTG+TGG | 0.515817 | 5.2:-60831299 | MS.gene50210:CDS |
| GGTTGGGTACGTCGGAGTAT+GGG | 0.517051 | 5.2:+60832992 | None:intergenic |
| GGGAGAGGCGGTTTAGGAGA+GGG | 0.518394 | 5.2:+60833085 | None:intergenic |
| GTTGAACTTTGTATACAAGC+AGG | 0.518701 | 5.2:-60831853 | MS.gene50210:CDS |
| GATGATTGCGGTGGTGCGCA+TGG | 0.519244 | 5.2:+60833116 | None:intergenic |
| CTCGGAATGGTTTACATGCA+TGG | 0.519540 | 5.2:-60831420 | MS.gene50210:CDS |
| TTAGGACCAACCTGAACCTC+GGG | 0.522461 | 5.2:+60831484 | None:intergenic |
| TGGAAGAGGCACCTGAGAAT+GGG | 0.526375 | 5.2:-60832861 | MS.gene50210:CDS |
| GCAACATTAGATGATATTGC+GGG | 0.526999 | 5.2:-60831391 | MS.gene50210:CDS |
| AGGTGAGGCGGTGGGAGAGG+CGG | 0.530140 | 5.2:+60833073 | None:intergenic |
| AGTAGAGGGTGGAGGTGAGG+CGG | 0.532534 | 5.2:+60833061 | None:intergenic |
| GGATTTAAGTATACATACAT+TGG | 0.535863 | 5.2:-60831581 | MS.gene50210:CDS |
| AGGGAGTTGGGAGATGATTG+CGG | 0.537284 | 5.2:+60833104 | None:intergenic |
| GTGTTGGCAAGCCAAGAGTT+GGG | 0.538886 | 5.2:-60831915 | MS.gene50210:CDS |
| AGACTTTGGACCTTCTCTAC+AGG | 0.543186 | 5.2:+60831664 | None:intergenic |
| ACCGGAAAGTAGAAACCCTC+TGG | 0.543290 | 5.2:+60832792 | None:intergenic |
| GCAACTCATGTTTGGAAAAG+GGG | 0.543293 | 5.2:-60831988 | MS.gene50210:CDS |
| ATCAGGTGCAAAGAAGATCA+TGG | 0.544243 | 5.2:-60831539 | MS.gene50210:CDS |
| TGAGATTGTTATTCAGAGCA+AGG | 0.546726 | 5.2:+60831332 | None:intergenic |
| TGAAGTAGAGGGTGGAGGTG+AGG | 0.549705 | 5.2:+60833058 | None:intergenic |
| GTCGTATGTGAAGTAGAGGG+TGG | 0.551154 | 5.2:+60833050 | None:intergenic |
| TGGGAGAGGCGGTTTAGGAG+AGG | 0.554212 | 5.2:+60833084 | None:intergenic |
| GTTAAAAGAGCCTGTAGAGA+AGG | 0.561466 | 5.2:-60831674 | MS.gene50210:CDS |
| GAGGTTCAGGTTGGTCCTAA+GGG | 0.564208 | 5.2:-60831481 | MS.gene50210:CDS |
| AATTTCACTATCTTCCGCAA+CGG | 0.566873 | 5.2:+60831750 | None:intergenic |
| CATGTACTGGACCAAAGAGT+TGG | 0.567295 | 5.2:-60832020 | MS.gene50210:CDS |
| CAAGAGTTGGGCATGATGAG+AGG | 0.572748 | 5.2:-60831903 | MS.gene50210:CDS |
| TTTGATTGCAAGGGCGAAAG+CGG | 0.572968 | 5.2:-60832920 | MS.gene50210:CDS |
| CTTAGGACCAACCTGAACCT+CGG | 0.574328 | 5.2:+60831483 | None:intergenic |
| AAGTATGTTGTGAATACTTG+TGG | 0.576332 | 5.2:-60831514 | MS.gene50210:CDS |
| TCTCAAGAGATATTATGGTA+AGG | 0.578916 | 5.2:-60831314 | MS.gene50210:CDS |
| TCGGCTAGGGTTGGGTACGT+CGG | 0.581279 | 5.2:+60832984 | None:intergenic |
| ACACAGAGTTCCACAACAGC+AGG | 0.583614 | 5.2:+60831289 | None:intergenic |
| AAGTGTCGTATGTGAAGTAG+AGG | 0.586158 | 5.2:+60833046 | None:intergenic |
| GCATTTCAGTTCAGGCAACA+AGG | 0.586907 | 5.2:+60831185 | None:intergenic |
| GGCAACATTAGATGATATTG+CGG | 0.594838 | 5.2:-60831392 | MS.gene50210:CDS |
| AACTTTCATTGGCGTCACGT+AGG | 0.595944 | 5.2:+60832942 | None:intergenic |
| TCAAAGCATCAGTCTCGGAA+TGG | 0.596875 | 5.2:-60831433 | MS.gene50210:CDS |
| GAAGAGTTTATCAAGCCAGA+GGG | 0.598737 | 5.2:-60832807 | MS.gene50210:CDS |
| TATTGTCCCGAGGTTCAGGT+TGG | 0.599496 | 5.2:-60831490 | MS.gene50210:CDS |
| GAGCATGATGAGATTAGATG+TGG | 0.604548 | 5.2:-60831233 | MS.gene50210:CDS |
| GGAACTCTGTGTGCAAGCTG+GGG | 0.606897 | 5.2:-60831278 | MS.gene50210:CDS |
| GTCAACTTCATCTCGTTCTG+GGG | 0.607681 | 5.2:+60831207 | None:intergenic |
| GCCGTGTAGAGTTCTGGAAG+AGG | 0.610934 | 5.2:-60832875 | MS.gene50210:CDS |
| AGAAGAGTTTATCAAGCCAG+AGG | 0.612033 | 5.2:-60832808 | MS.gene50210:CDS |
| GAGGTTCACATTGGTTATGT+GGG | 0.612214 | 5.2:-60832057 | MS.gene50210:CDS |
| AGGCTTCAAAGCATCAGTCT+CGG | 0.613836 | 5.2:-60831438 | MS.gene50210:CDS |
| TCAACTATGGCAGGGATACG+TGG | 0.615033 | 5.2:+60831871 | None:intergenic |
| TACAAAGTTCAACTATGGCA+GGG | 0.621420 | 5.2:+60831863 | None:intergenic |
| ACATAAGTTGAGAATGTGCA+AGG | 0.624521 | 5.2:-60831458 | MS.gene50210:CDS |
| TGGTTTACATGCATGGCAAG+AGG | 0.626947 | 5.2:-60831413 | MS.gene50210:CDS |
| TTTCATTTGTATGACCGTGT+TGG | 0.631952 | 5.2:-60831931 | MS.gene50210:CDS |
| GTATGTGAAGTAGAGGGTGG+AGG | 0.632488 | 5.2:+60833053 | None:intergenic |
| TGTTGGGATCAGGTGAGTCG+AGG | 0.634269 | 5.2:+60833022 | None:intergenic |
| CTGGACCAAAGAGTTGGCTG+CGG | 0.639041 | 5.2:-60832014 | MS.gene50210:CDS |
| AGAGAAGGTCCAAAGTCTAG+TGG | 0.654510 | 5.2:-60831659 | MS.gene50210:CDS |
| GGAGAACAAAATAAGTCACA+TGG | 0.658114 | 5.2:-60831638 | MS.gene50210:CDS |
| AAGGGGAGGTGCTCAAGACG+TGG | 0.662112 | 5.2:-60831971 | MS.gene50210:CDS |
| ACTCATGTTTGGAAAAGGGG+AGG | 0.669405 | 5.2:-60831985 | MS.gene50210:CDS |
| TACTTGTGGATATTGTCCCG+AGG | 0.672326 | 5.2:-60831500 | MS.gene50210:CDS |
| GCCTCTTCCAGAACTCTACA+CGG | 0.688795 | 5.2:+60832874 | None:intergenic |
| AGTGTCGTATGTGAAGTAGA+GGG | 0.710593 | 5.2:+60833047 | None:intergenic |
| GAGTTGGGAGATGATTGCGG+TGG | 0.722197 | 5.2:+60833107 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTTAAAAAAAATAGAT+TGG | - | chr5.2:60832014-60832033 | MS.gene50210:CDS | 10.0% |
| !!! | TTTTTAAGAAAAATGACATA+TGG | + | chr5.2:60832006-60832025 | None:intergenic | 15.0% |
| !! | TTAACTCATTATATTAGATG+AGG | + | chr5.2:60831741-60831760 | None:intergenic | 20.0% |
| !! | TTAATTTAAGAATCACACAA+AGG | + | chr5.2:60832064-60832083 | None:intergenic | 20.0% |
| !!! | GTTTTCTTTCTGATTTTATT+CGG | + | chr5.2:60831347-60831366 | None:intergenic | 20.0% |
| !!! | TGATTAGAATATGGTAATTT+TGG | - | chr5.2:60831837-60831856 | MS.gene50210:CDS | 20.0% |
| ! | AACAATCTCAAGAGATATTA+TGG | - | chr5.2:60832990-60833009 | MS.gene50210:CDS | 25.0% |
| ! | AGTGTTCAATGATTAGAATA+TGG | - | chr5.2:60831828-60831847 | MS.gene50210:CDS | 25.0% |
| ! | ATGATGGTTAAGAATTTAAG+TGG | - | chr5.2:60831649-60831668 | MS.gene50210:CDS | 25.0% |
| ! | GGATTTAAGTATACATACAT+TGG | - | chr5.2:60832728-60832747 | MS.gene50210:intron | 25.0% |
| ! | TAAGGAATCACTTAATTGAT+GGG | + | chr5.2:60831874-60831893 | None:intergenic | 25.0% |
| ! | TTAAGGAATCACTTAATTGA+TGG | + | chr5.2:60831875-60831894 | None:intergenic | 25.0% |
| ! | TTGTATACAAAGTTCAACTA+TGG | + | chr5.2:60832454-60832473 | None:intergenic | 25.0% |
| !! | GTTTAGTTACTTTAGTATCT+AGG | - | chr5.2:60831707-60831726 | MS.gene50210:CDS | 25.0% |
| !! | TTTGAAGTAGAAAATGATGA+TGG | - | chr5.2:60831633-60831652 | MS.gene50210:CDS | 25.0% |
| !!! | AATAGATTGGCTCTTTTTAA+AGG | - | chr5.2:60832027-60832046 | MS.gene50210:CDS | 25.0% |
| !!! | AATGAAAGTTTTGATTGCAA+GGG | - | chr5.2:60831380-60831399 | MS.gene50210:CDS | 25.0% |
| !!! | TCATACAAATGAAAGCATTT+TGG | + | chr5.2:60832372-60832391 | None:intergenic | 25.0% |
| !!! | TCTTGGCTTTTTAATGTTTT+TGG | - | chr5.2:60832150-60832169 | MS.gene50210:intron | 25.0% |
| !!! | TTTAATGGTTTTGACTTATC+AGG | - | chr5.2:60832220-60832239 | MS.gene50210:intron | 25.0% |
| AAACCTGTATATTGCATTGA+AGG | - | chr5.2:60832516-60832535 | MS.gene50210:intron | 30.0% | |
| AAGTATGTTGTGAATACTTG+TGG | - | chr5.2:60832795-60832814 | MS.gene50210:CDS | 30.0% | |
| AATACCTATAAATTAGTCCC+TGG | + | chr5.2:60831803-60831822 | None:intergenic | 30.0% | |
| ACGAAGAAACGAACAAATTA+AGG | - | chr5.2:60832706-60832725 | MS.gene50210:intron | 30.0% | |
| ATATAGGACGAATCAGTTAA+AGG | + | chr5.2:60832615-60832634 | None:intergenic | 30.0% | |
| ATCATGCTCTTATATTGATC+AGG | + | chr5.2:60833065-60833084 | None:intergenic | 30.0% | |
| CGAAGAAACGAACAAATTAA+GGG | - | chr5.2:60832707-60832726 | MS.gene50210:intron | 30.0% | |
| CTTGCAATCAAAACTTTCAT+TGG | + | chr5.2:60831381-60831400 | None:intergenic | 30.0% | |
| TAAGTGATTCCTTAATCTCT+GGG | - | chr5.2:60831880-60831899 | MS.gene50210:CDS | 30.0% | |
| TCTCAAGAGATATTATGGTA+AGG | - | chr5.2:60832995-60833014 | MS.gene50210:CDS | 30.0% | |
| TTAAAAAATTTCCCACGAAG+AGG | - | chr5.2:60832487-60832506 | MS.gene50210:intron | 30.0% | |
| TTAAGTGATTCCTTAATCTC+TGG | - | chr5.2:60831879-60831898 | MS.gene50210:CDS | 30.0% | |
| ! | CTTGTTGTCTTCACATTTAA+TGG | - | chr5.2:60832205-60832224 | MS.gene50210:intron | 30.0% |
| ! | TACAGGCTCTTTTAACATAT+AGG | + | chr5.2:60832631-60832650 | None:intergenic | 30.0% |
| ! | TTTCTGATTTTATTCGGCTA+GGG | + | chr5.2:60831341-60831360 | None:intergenic | 30.0% |
| !! | AACAAAAGTGTTGGAATGTA+GGG | - | chr5.2:60831918-60831937 | MS.gene50210:CDS | 30.0% |
| !!! | CAATGAAAGTTTTGATTGCA+AGG | - | chr5.2:60831379-60831398 | MS.gene50210:CDS | 30.0% |
| !!! | TCTTCGTGGGAAATTTTTTA+AGG | + | chr5.2:60832488-60832507 | None:intergenic | 30.0% |
| AATGCCAGGGACTAATTTAT+AGG | - | chr5.2:60831796-60831815 | MS.gene50210:CDS | 35.0% | |
| AATTTCACTATCTTCCGCAA+CGG | + | chr5.2:60832562-60832581 | None:intergenic | 35.0% | |
| AGAAGTAGTACAGGTTTCAT+TGG | - | chr5.2:60832176-60832195 | MS.gene50210:intron | 35.0% | |
| ATACAAAGTTCAACTATGGC+AGG | + | chr5.2:60832450-60832469 | None:intergenic | 35.0% | |
| ATTCTCAACTTATGTCCCTT+AGG | + | chr5.2:60832846-60832865 | None:intergenic | 35.0% | |
| CATGAAATTCGAACATGTAC+TGG | - | chr5.2:60832276-60832295 | MS.gene50210:intron | 35.0% | |
| CTCTTATATTGATCAGGAAC+TGG | + | chr5.2:60833059-60833078 | None:intergenic | 35.0% | |
| CTTCCTTCAATGCAATATAC+AGG | + | chr5.2:60832522-60832541 | None:intergenic | 35.0% | |
| GCAACATTAGATGATATTGC+GGG | - | chr5.2:60832918-60832937 | MS.gene50210:CDS | 35.0% | |
| GGAGAACAAAATAAGTCACA+TGG | - | chr5.2:60832671-60832690 | MS.gene50210:intron | 35.0% | |
| GGCAACATTAGATGATATTG+CGG | - | chr5.2:60832917-60832936 | MS.gene50210:CDS | 35.0% | |
| GTATACATACATTGGACTCA+TGG | - | chr5.2:60832736-60832755 | MS.gene50210:intron | 35.0% | |
| GTTGAACTTTGTATACAAGC+AGG | - | chr5.2:60832456-60832475 | MS.gene50210:intron | 35.0% | |
| TACAAAGTTCAACTATGGCA+GGG | + | chr5.2:60832449-60832468 | None:intergenic | 35.0% | |
| TCAACATGCCAGACAAAATT+TGG | + | chr5.2:60832945-60832964 | None:intergenic | 35.0% | |
| TGCAACTCATGTTTGGAAAA+GGG | - | chr5.2:60832320-60832339 | MS.gene50210:intron | 35.0% | |
| TTCCTCATTTGAAAATGCCA+GGG | - | chr5.2:60831783-60831802 | MS.gene50210:CDS | 35.0% | |
| TTTCATTTGTATGACCGTGT+TGG | - | chr5.2:60832378-60832397 | MS.gene50210:intron | 35.0% | |
| ! | AAATTTTGTCTGGCATGTTG+AGG | - | chr5.2:60832944-60832963 | MS.gene50210:CDS | 35.0% |
| ! | ACATAAGTTGAGAATGTGCA+AGG | - | chr5.2:60832851-60832870 | MS.gene50210:CDS | 35.0% |
| ! | ACCTTAAGCAACAAAAGTGT+TGG | - | chr5.2:60831909-60831928 | MS.gene50210:CDS | 35.0% |
| ! | AGTGGTAGATTTTTGTGTCA+TGG | - | chr5.2:60832126-60832145 | MS.gene50210:intron | 35.0% |
| ! | CTTTCTGATTTTATTCGGCT+AGG | + | chr5.2:60831342-60831361 | None:intergenic | 35.0% |
| ! | GAATCACACAAAGGCATATT+TGG | + | chr5.2:60832055-60832074 | None:intergenic | 35.0% |
| ! | GATTTTTGTGTCATGGATCT+TGG | - | chr5.2:60832133-60832152 | MS.gene50210:intron | 35.0% |
| ! | TCATGGTTTGAGATGATATC+AGG | - | chr5.2:60832753-60832772 | MS.gene50210:CDS | 35.0% |
| ! | TGAGATTGTTATTCAGAGCA+AGG | + | chr5.2:60832980-60832999 | None:intergenic | 35.0% |
| ! | TTTTGTAACGAGGTTCACAT+TGG | - | chr5.2:60832243-60832262 | MS.gene50210:intron | 35.0% |
| ! | TTTTGTTCTCCACTAGACTT+TGG | + | chr5.2:60832662-60832681 | None:intergenic | 35.0% |
| !! | ACAAAAGTGTTGGAATGTAG+GGG | - | chr5.2:60831919-60831938 | MS.gene50210:CDS | 35.0% |
| !! | ACTTATCAGGTTTTGTAACG+AGG | - | chr5.2:60832233-60832252 | MS.gene50210:intron | 35.0% |
| !! | CAACAAAAGTGTTGGAATGT+AGG | - | chr5.2:60831917-60831936 | MS.gene50210:CDS | 35.0% |
| !! | GCAGCATTTGTTTTTCTAAG+TGG | - | chr5.2:60832108-60832127 | MS.gene50210:intron | 35.0% |
| !! | TCCAACACTTTTGTTGCTTA+AGG | + | chr5.2:60831913-60831932 | None:intergenic | 35.0% |
| !!! | TTTTGGAGTAGAAGTAGTAC+AGG | - | chr5.2:60832167-60832186 | MS.gene50210:intron | 35.0% |
| ACTGATGTGAGGGAAAATGA+CGG | - | chr5.2:60831958-60831977 | MS.gene50210:CDS | 40.0% | |
| AGAAGAGTTTATCAAGCCAG+AGG | - | chr5.2:60831501-60831520 | MS.gene50210:CDS | 40.0% | |
| AGTGTCGTATGTGAAGTAGA+GGG | + | chr5.2:60831265-60831284 | None:intergenic | 40.0% | |
| ATCAGGTGCAAAGAAGATCA+TGG | - | chr5.2:60832770-60832789 | MS.gene50210:CDS | 40.0% | |
| GAAGAGTTTATCAAGCCAGA+GGG | - | chr5.2:60831502-60831521 | MS.gene50210:CDS | 40.0% | |
| GAGCATGATGAGATTAGATG+TGG | - | chr5.2:60833076-60833095 | MS.gene50210:CDS | 40.0% | |
| GCAACTCATGTTTGGAAAAG+GGG | - | chr5.2:60832321-60832340 | MS.gene50210:intron | 40.0% | |
| GTGCAACTCATGTTTGGAAA+AGG | - | chr5.2:60832319-60832338 | MS.gene50210:intron | 40.0% | |
| GTTAAAAGAGCCTGTAGAGA+AGG | - | chr5.2:60832635-60832654 | MS.gene50210:intron | 40.0% | |
| GTTCCTCATTTGAAAATGCC+AGG | - | chr5.2:60831782-60831801 | MS.gene50210:CDS | 40.0% | |
| TCGAACTAGTTGCTTCAAAC+CGG | + | chr5.2:60831538-60831557 | None:intergenic | 40.0% | |
| TGGCATGTTGAGGATCTAAA+TGG | - | chr5.2:60832954-60832973 | MS.gene50210:CDS | 40.0% | |
| ! | AAGTGTCGTATGTGAAGTAG+AGG | + | chr5.2:60831266-60831285 | None:intergenic | 40.0% |
| ! | GAGGTTCACATTGGTTATGT+GGG | - | chr5.2:60832252-60832271 | MS.gene50210:intron | 40.0% |
| ! | GATTTTATTCGGCTAGGGTT+GGG | + | chr5.2:60831336-60831355 | None:intergenic | 40.0% |
| ! | GCAACTAGTTCGAGTTATTC+CGG | - | chr5.2:60831545-60831564 | MS.gene50210:CDS | 40.0% |
| ! | GGTATTTTGCCCAGAGATTA+AGG | + | chr5.2:60831892-60831911 | None:intergenic | 40.0% |
| ! | GTAAGATTGCACTGATGTGA+GGG | - | chr5.2:60831948-60831967 | MS.gene50210:CDS | 40.0% |
| ! | TGATTTTATTCGGCTAGGGT+TGG | + | chr5.2:60831337-60831356 | None:intergenic | 40.0% |
| ! | TGCAGATTTTGAATCCGTTG+CGG | - | chr5.2:60832545-60832564 | MS.gene50210:intron | 40.0% |
| ! | TGTAAGATTGCACTGATGTG+AGG | - | chr5.2:60831947-60831966 | MS.gene50210:CDS | 40.0% |
| !! | CAAAAGTGTTGGAATGTAGG+GGG | - | chr5.2:60831920-60831939 | MS.gene50210:CDS | 40.0% |
| AACTTTCATTGGCGTCACGT+AGG | + | chr5.2:60831370-60831389 | None:intergenic | 45.0% | |
| ACTCATGTTTGGAAAAGGGG+AGG | - | chr5.2:60832324-60832343 | MS.gene50210:intron | 45.0% | |
| ACTTTCATTGGCGTCACGTA+GGG | + | chr5.2:60831369-60831388 | None:intergenic | 45.0% | |
| AGACTTTGGACCTTCTCTAC+AGG | + | chr5.2:60832648-60832667 | None:intergenic | 45.0% | |
| AGAGAAGGTCCAAAGTCTAG+TGG | - | chr5.2:60832650-60832669 | MS.gene50210:intron | 45.0% | |
| AGGTCAACTTCATCTCGTTC+TGG | + | chr5.2:60833107-60833126 | None:intergenic | 45.0% | |
| CATGTACTGGACCAAAGAGT+TGG | - | chr5.2:60832289-60832308 | MS.gene50210:intron | 45.0% | |
| CTCGGAATGGTTTACATGCA+TGG | - | chr5.2:60832889-60832908 | MS.gene50210:CDS | 45.0% | |
| CTGATGTGAGGGAAAATGAC+GGG | - | chr5.2:60831959-60831978 | MS.gene50210:CDS | 45.0% | |
| GAGTATGGGAATGCGTTGTT+GGG | + | chr5.2:60831306-60831325 | None:intergenic | 45.0% | |
| GGTCAACTTCATCTCGTTCT+GGG | + | chr5.2:60833106-60833125 | None:intergenic | 45.0% | |
| GTCAACTTCATCTCGTTCTG+GGG | + | chr5.2:60833105-60833124 | None:intergenic | 45.0% | |
| TACTTGTGGATATTGTCCCG+AGG | - | chr5.2:60832809-60832828 | MS.gene50210:CDS | 45.0% | |
| TGGTTTACATGCATGGCAAG+AGG | - | chr5.2:60832896-60832915 | MS.gene50210:CDS | 45.0% | |
| TTTGATTGCAAGGGCGAAAG+CGG | - | chr5.2:60831389-60831408 | MS.gene50210:CDS | 45.0% | |
| ! | AGGCTTCAAAGCATCAGTCT+CGG | - | chr5.2:60832871-60832890 | MS.gene50210:CDS | 45.0% |
| ! | CGAGGTTCACATTGGTTATG+TGG | - | chr5.2:60832251-60832270 | MS.gene50210:intron | 45.0% |
| ! | GTCCCTGGCATTTTCAAATG+AGG | + | chr5.2:60831788-60831807 | None:intergenic | 45.0% |
| ! | TCAAAGCATCAGTCTCGGAA+TGG | - | chr5.2:60832876-60832895 | MS.gene50210:CDS | 45.0% |
| ! | TTGCGGGTCCAAATTTTGTC+TGG | - | chr5.2:60832934-60832953 | MS.gene50210:CDS | 45.0% |
| !!! | AGGTTTTGTTCTCCTCTTCG+TGG | + | chr5.2:60832502-60832521 | None:intergenic | 45.0% |
| !!! | GGTTTTGTTCTCCTCTTCGT+GGG | + | chr5.2:60832501-60832520 | None:intergenic | 45.0% |
| ACACAGAGTTCCACAACAGC+AGG | + | chr5.2:60833023-60833042 | None:intergenic | 50.0% | |
| ACCGGAAAGTAGAAACCCTC+TGG | + | chr5.2:60831520-60831539 | None:intergenic | 50.0% | |
| AGGGAGTTGGGAGATGATTG+CGG | + | chr5.2:60831208-60831227 | None:intergenic | 50.0% | |
| CAAGAGTTGGGCATGATGAG+AGG | - | chr5.2:60832406-60832425 | MS.gene50210:intron | 50.0% | |
| CTCTCATCATGCCCAACTCT+TGG | + | chr5.2:60832408-60832427 | None:intergenic | 50.0% | |
| CTTAGGACCAACCTGAACCT+CGG | + | chr5.2:60832829-60832848 | None:intergenic | 50.0% | |
| GCCAGAGGGTTTCTACTTTC+CGG | - | chr5.2:60831516-60831535 | MS.gene50210:CDS | 50.0% | |
| GCCTCTTCCAGAACTCTACA+CGG | + | chr5.2:60831438-60831457 | None:intergenic | 50.0% | |
| GGAGTATGGGAATGCGTTGT+TGG | + | chr5.2:60831307-60831326 | None:intergenic | 50.0% | |
| GTATGTGAAGTAGAGGGTGG+AGG | + | chr5.2:60831259-60831278 | None:intergenic | 50.0% | |
| GTCGTATGTGAAGTAGAGGG+TGG | + | chr5.2:60831262-60831281 | None:intergenic | 50.0% | |
| TATTGTCCCGAGGTTCAGGT+TGG | - | chr5.2:60832819-60832838 | MS.gene50210:CDS | 50.0% | |
| TCAACTATGGCAGGGATACG+TGG | + | chr5.2:60832441-60832460 | None:intergenic | 50.0% | |
| TGCGGAGTGCAACTCATGTT+TGG | - | chr5.2:60832313-60832332 | MS.gene50210:intron | 50.0% | |
| TGGAACTCTGTGTGCAAGCT+GGG | - | chr5.2:60833030-60833049 | MS.gene50210:CDS | 50.0% | |
| TGGATATTGTCCCGAGGTTC+AGG | - | chr5.2:60832815-60832834 | MS.gene50210:CDS | 50.0% | |
| TTAGGACCAACCTGAACCTC+GGG | + | chr5.2:60832828-60832847 | None:intergenic | 50.0% | |
| ! | GTGTTGGCAAGCCAAGAGTT+GGG | - | chr5.2:60832394-60832413 | MS.gene50210:intron | 50.0% |
| !! | CAACTCTTGGCTTGCCAACA+CGG | + | chr5.2:60832395-60832414 | None:intergenic | 50.0% |
| !! | GAGGTTCAGGTTGGTCCTAA+GGG | - | chr5.2:60832828-60832847 | MS.gene50210:CDS | 50.0% |
| !! | TGGAAGAGGCACCTGAGAAT+GGG | - | chr5.2:60831448-60831467 | MS.gene50210:CDS | 50.0% |
| CTCGCAACTTCCACAAGCTC+AGG | + | chr5.2:60831483-60831502 | None:intergenic | 55.0% | |
| CTGGACCAAAGAGTTGGCTG+CGG | - | chr5.2:60832295-60832314 | MS.gene50210:intron | 55.0% | |
| GAGTTGGGAGATGATTGCGG+TGG | + | chr5.2:60831205-60831224 | None:intergenic | 55.0% | |
| GCATACTCGCAGCGCAAAAC+CGG | + | chr5.2:60831567-60831586 | None:intergenic | 55.0% | |
| GCGGTTTAGGAGAGGGAGTT+GGG | + | chr5.2:60831220-60831239 | None:intergenic | 55.0% | |
| GGAACTCTGTGTGCAAGCTG+GGG | - | chr5.2:60833031-60833050 | MS.gene50210:CDS | 55.0% | |
| GGCACAAGCAACCCATTCTC+AGG | + | chr5.2:60831462-60831481 | None:intergenic | 55.0% | |
| GGGAATGCGTTGTTGGGATC+AGG | + | chr5.2:60831300-60831319 | None:intergenic | 55.0% | |
| GGTTGGGTACGTCGGAGTAT+GGG | + | chr5.2:60831320-60831339 | None:intergenic | 55.0% | |
| GTGGAACTCTGTGTGCAAGC+TGG | - | chr5.2:60833029-60833048 | MS.gene50210:CDS | 55.0% | |
| GTTGCTTGTGCCTGAGCTTG+TGG | - | chr5.2:60831470-60831489 | MS.gene50210:CDS | 55.0% | |
| TGAAGTAGAGGGTGGAGGTG+AGG | + | chr5.2:60831254-60831273 | None:intergenic | 55.0% | |
| TGGTAAGGCTCCTGCTGTTG+TGG | - | chr5.2:60833010-60833029 | MS.gene50210:CDS | 55.0% | |
| TGTTGGGATCAGGTGAGTCG+AGG | + | chr5.2:60831290-60831309 | None:intergenic | 55.0% | |
| ! | AGCGGAGAGAGAAGCACGAA+AGG | - | chr5.2:60831407-60831426 | MS.gene50210:CDS | 55.0% |
| ! | CGTGTTGGCAAGCCAAGAGT+TGG | - | chr5.2:60832393-60832412 | MS.gene50210:intron | 55.0% |
| !! | CGAGGTTCAGGTTGGTCCTA+AGG | - | chr5.2:60832827-60832846 | MS.gene50210:CDS | 55.0% |
| !! | CTGGAAGAGGCACCTGAGAA+TGG | - | chr5.2:60831447-60831466 | MS.gene50210:CDS | 55.0% |
| !! | GCCGTGTAGAGTTCTGGAAG+AGG | - | chr5.2:60831434-60831453 | MS.gene50210:CDS | 55.0% |
| AGTAGAGGGTGGAGGTGAGG+CGG | + | chr5.2:60831251-60831270 | None:intergenic | 60.0% | |
| GCACTCCGCAGCCAACTCTT+TGG | + | chr5.2:60832303-60832322 | None:intergenic | 60.0% | |
| GGCGGTTTAGGAGAGGGAGT+TGG | + | chr5.2:60831221-60831240 | None:intergenic | 60.0% | |
| GGGAGAGGCGGTTTAGGAGA+GGG | + | chr5.2:60831227-60831246 | None:intergenic | 60.0% | |
| GGGTTGGGTACGTCGGAGTA+TGG | + | chr5.2:60831321-60831340 | None:intergenic | 60.0% | |
| TCGGCTAGGGTTGGGTACGT+CGG | + | chr5.2:60831328-60831347 | None:intergenic | 60.0% | |
| TGGGAGAGGCGGTTTAGGAG+AGG | + | chr5.2:60831228-60831247 | None:intergenic | 60.0% | |
| !! | AAGGGGAGGTGCTCAAGACG+TGG | - | chr5.2:60832338-60832357 | MS.gene50210:intron | 60.0% |
| GGCGCAGCCGTGTAGAGTTC+TGG | - | chr5.2:60831428-60831447 | MS.gene50210:CDS | 65.0% | |
| AGAGGGTGGAGGTGAGGCGG+TGG | + | chr5.2:60831248-60831267 | None:intergenic | 70.0% | |
| AGGTGAGGCGGTGGGAGAGG+CGG | + | chr5.2:60831239-60831258 | None:intergenic | 70.0% | |
| GAGGGTGGAGGTGAGGCGGT+GGG | + | chr5.2:60831247-60831266 | None:intergenic | 70.0% | |
| GGCGGTGGGAGAGGCGGTTT+AGG | + | chr5.2:60831233-60831252 | None:intergenic | 70.0% | |
| TGGAGGTGAGGCGGTGGGAG+AGG | + | chr5.2:60831242-60831261 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 60831195 | 60833136 | 60831195 | ID=MS.gene50210 |
| chr5.2 | mRNA | 60831195 | 60833136 | 60831195 | ID=MS.gene50210.t1;Parent=MS.gene50210 |
| chr5.2 | exon | 60832751 | 60833136 | 60832751 | ID=MS.gene50210.t1.exon1;Parent=MS.gene50210.t1 |
| chr5.2 | CDS | 60832751 | 60833136 | 60832751 | ID=cds.MS.gene50210.t1;Parent=MS.gene50210.t1 |
| chr5.2 | exon | 60831195 | 60832089 | 60831195 | ID=MS.gene50210.t1.exon2;Parent=MS.gene50210.t1 |
| chr5.2 | CDS | 60831195 | 60832089 | 60831195 | ID=cds.MS.gene50210.t1;Parent=MS.gene50210.t1 |
| Gene Sequence |
| Protein sequence |
