Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50249.t1 | XP_024639959.1 | 97.7 | 353 | 8 | 0 | 1 | 353 | 1 | 353 | 1.30E-187 | 665.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50249.t1 | B9DFS6 | 60.9 | 376 | 108 | 11 | 1 | 353 | 1 | 360 | 1.5e-104 | 380.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50249.t1 | G7JZQ0 | 97.7 | 353 | 8 | 0 | 1 | 353 | 1 | 353 | 9.1e-188 | 665.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050359 | MS.gene50249 | 0.81196 | 5.39E-51 | -1.69E-46 |
| MS.gene050384 | MS.gene50249 | 0.809177 | 2.15E-50 | -1.69E-46 |
| MS.gene050386 | MS.gene50249 | 0.808544 | 2.94E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene50249 | 0.821558 | 3.79E-53 | -1.69E-46 |
| MS.gene051381 | MS.gene50249 | 0.805421 | 1.35E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene50249 | 0.820926 | 5.30E-53 | -1.69E-46 |
| MS.gene052609 | MS.gene50249 | 0.81769 | 2.89E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene50249 | 0.803294 | 3.73E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene50249 | 0.810891 | 9.20E-51 | -1.69E-46 |
| MS.gene053575 | MS.gene50249 | 0.803615 | 3.20E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene50249 | 0.821705 | 3.50E-53 | -1.69E-46 |
| MS.gene059007 | MS.gene50249 | 0.843872 | 1.07E-58 | -1.69E-46 |
| MS.gene061006 | MS.gene50249 | 0.806676 | 7.33E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50249.t1 | MTR_5g073280 | 97.458 | 354 | 9 | 0 | 1 | 354 | 1 | 354 | 0.0 | 713 |
| MS.gene50249.t1 | MTR_5g083370 | 54.464 | 336 | 108 | 9 | 21 | 354 | 13 | 305 | 1.04e-108 | 327 |
| MS.gene50249.t1 | MTR_1g059650 | 30.734 | 218 | 117 | 5 | 135 | 352 | 27 | 210 | 1.07e-22 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50249.t1 | AT5G07120 | 60.106 | 376 | 113 | 10 | 1 | 354 | 1 | 361 | 5.31e-138 | 404 |
| MS.gene50249.t1 | AT5G07120 | 60.106 | 376 | 113 | 10 | 1 | 354 | 1 | 361 | 5.31e-138 | 404 |
| MS.gene50249.t1 | AT5G07120 | 60.106 | 376 | 113 | 10 | 1 | 354 | 1 | 361 | 1.50e-137 | 403 |
| MS.gene50249.t1 | AT5G58440 | 59.424 | 382 | 119 | 10 | 1 | 354 | 1 | 374 | 3.15e-130 | 385 |
| MS.gene50249.t1 | AT5G06140 | 43.443 | 122 | 61 | 2 | 135 | 256 | 25 | 138 | 5.92e-25 | 104 |
Find 95 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGTCTGCGTTAGGTGAATT+AGG | 0.169531 | 5.2:-61337871 | None:intergenic |
| AGGACGAATTTACCGGATTT+TGG | 0.186804 | 5.2:+61338102 | MS.gene50249:CDS |
| GGATTTGTTGAGGTTGTTTA+AGG | 0.204934 | 5.2:+61338506 | MS.gene50249:CDS |
| GGATGTGGCTTCGAGGGTTT+TGG | 0.256808 | 5.2:+61338398 | MS.gene50249:CDS |
| GACGCTTTCTGATCGGTTAT+CGG | 0.318166 | 5.2:+61338167 | MS.gene50249:CDS |
| GAGAATTACGGTTTCGAATC+CGG | 0.326585 | 5.2:+61338008 | MS.gene50249:CDS |
| GGAGAAATATTTGAGGAGAT+TGG | 0.338535 | 5.2:+61338293 | MS.gene50249:CDS |
| CGTCTGCGTTAGGTGAATTA+GGG | 0.338670 | 5.2:-61337870 | None:intergenic |
| TACGGTTTCGAATCCGGTTA+AGG | 0.354816 | 5.2:+61338014 | MS.gene50249:CDS |
| TTCTGAGTATTTGAGAATTA+CGG | 0.359681 | 5.2:+61337996 | MS.gene50249:CDS |
| TAAGGAGTTGAAGCAGTCTA+TGG | 0.362442 | 5.2:+61338524 | MS.gene50249:CDS |
| GAATTCTCTTGCTCCTTAAC+CGG | 0.373957 | 5.2:-61338027 | None:intergenic |
| TGGCGGATCATCCGGTGATT+CGG | 0.400285 | 5.2:+61338313 | MS.gene50249:CDS |
| AGCAGTCTATGGCGAATGAT+TGG | 0.406221 | 5.2:+61338535 | MS.gene50249:CDS |
| TCCTAGTGAGGTTGTGCAAC+CGG | 0.409003 | 5.2:+61338470 | MS.gene50249:CDS |
| TGAGCAGAGGAGAGTGGCAT+TGG | 0.413983 | 5.2:+61338272 | MS.gene50249:CDS |
| GTGAAAATTGCGTCTGCGTT+AGG | 0.416563 | 5.2:-61337880 | None:intergenic |
| ACGAATTCGGTGTTCGAAGA+AGG | 0.428475 | 5.2:+61338130 | MS.gene50249:CDS |
| AATTCGTTCCCTCCAAAATC+CGG | 0.433165 | 5.2:-61338114 | None:intergenic |
| ACAATACTCTTATCCGGCCT+TGG | 0.433366 | 5.2:-61338216 | None:intergenic |
| GAAGCTGCCGAAGCAGTTGA+TGG | 0.437498 | 5.2:+61338431 | MS.gene50249:CDS |
| GAGGAGATTGGCGGATCATC+CGG | 0.443190 | 5.2:+61338305 | MS.gene50249:CDS |
| TAAGAGTATTGTGGAGAGTC+AGG | 0.446853 | 5.2:+61338227 | MS.gene50249:CDS |
| TACGACGAGGACGAATTTAC+CGG | 0.447282 | 5.2:+61338095 | MS.gene50249:CDS |
| AGTTTCTTGCAAAGAAAGAA+AGG | 0.458734 | 5.2:+61338595 | MS.gene50249:CDS |
| ATCGCCGAGCTTCGTTTCGC+CGG | 0.464931 | 5.2:+61337795 | MS.gene50249:CDS |
| GCAGTCTATGGCGAATGATT+GGG | 0.464967 | 5.2:+61338536 | MS.gene50249:CDS |
| AAGCTGCCGAAGCAGTTGAT+GGG | 0.478618 | 5.2:+61338432 | MS.gene50249:CDS |
| CTCTCCACAATACTCTTATC+CGG | 0.481829 | 5.2:-61338222 | None:intergenic |
| TCAAGGGAAGCTTCCGTTGG+TGG | 0.487398 | 5.2:+61338368 | MS.gene50249:CDS |
| GTTGGTGGGTTCGACGGATG+TGG | 0.498991 | 5.2:+61338383 | MS.gene50249:CDS |
| CATCGTTTGTTTCTGAGAGA+GGG | 0.499280 | 5.2:-61337645 | None:intergenic |
| CAAGGGAAGCTTCCGTTGGT+GGG | 0.504272 | 5.2:+61338369 | MS.gene50249:CDS |
| TGGCATTGGAGAAATATTTG+AGG | 0.504425 | 5.2:+61338286 | MS.gene50249:CDS |
| AATCAATGGTGCTTCTCAGC+AGG | 0.506291 | 5.2:+61338638 | MS.gene50249:CDS |
| TGTCGGAGTATTAACACCAT+TGG | 0.510591 | 5.2:-61337926 | None:intergenic |
| TTCGACGGATGTGGCTTCGA+GGG | 0.511073 | 5.2:+61338392 | MS.gene50249:CDS |
| GTTGTGCAACCGGCGAAAGG+TGG | 0.512000 | 5.2:+61338480 | MS.gene50249:CDS |
| GCCGAGCTTCGTTTCGCCGG+TGG | 0.512200 | 5.2:+61337798 | MS.gene50249:CDS |
| GCTTCCGTTGGTGGGTTCGA+CGG | 0.515115 | 5.2:+61338377 | MS.gene50249:CDS |
| ACGAAGCTCGGCGATGAGAG+AGG | 0.517267 | 5.2:-61337787 | None:intergenic |
| TCATCACTCTTCCGAATCAC+CGG | 0.518186 | 5.2:-61338324 | None:intergenic |
| GTTTCTTGCAAAGAAAGAAA+GGG | 0.521397 | 5.2:+61338596 | MS.gene50249:CDS |
| GAACTTGAACAACAAATCAA+TGG | 0.529805 | 5.2:+61338624 | MS.gene50249:CDS |
| AATTCGAATTCGATTGTGCC+TGG | 0.532154 | 5.2:+61338045 | MS.gene50249:CDS |
| TTCTAAGCCGCTTGTTGTCG+AGG | 0.533178 | 5.2:+61338563 | MS.gene50249:CDS |
| TCATCGTTTGTTTCTGAGAG+AGG | 0.536604 | 5.2:-61337646 | None:intergenic |
| ATACTCTTATCCGGCCTTGG+CGG | 0.537593 | 5.2:-61338213 | None:intergenic |
| GTTCGACGGATGTGGCTTCG+AGG | 0.539979 | 5.2:+61338391 | MS.gene50249:CDS |
| GCTTGTTGTCGAGGAAGATA+AGG | 0.541787 | 5.2:+61338572 | MS.gene50249:CDS |
| GAGTCAGGTGATGCAAAAGC+AGG | 0.545661 | 5.2:+61338242 | MS.gene50249:CDS |
| AGCAGGAGTTTGTTGAGCAG+AGG | 0.547480 | 5.2:+61338259 | MS.gene50249:CDS |
| AAATCCCTCCCACCTTTCGC+CGG | 0.548404 | 5.2:-61338489 | None:intergenic |
| TCGAAGAAGGTTTAAAGATG+TGG | 0.549228 | 5.2:+61338143 | MS.gene50249:CDS |
| TTATCTTCCTCGACAACAAG+CGG | 0.550409 | 5.2:-61338570 | None:intergenic |
| GTTTGTTGAGCAGAGGAGAG+TGG | 0.556183 | 5.2:+61338266 | MS.gene50249:CDS |
| TTGTGCAACCGGCGAAAGGT+GGG | 0.563435 | 5.2:+61338481 | MS.gene50249:CDS |
| CAGTCTATGGCGAATGATTG+GGG | 0.564990 | 5.2:+61338537 | MS.gene50249:CDS |
| CGGTTATCGGAGGCGTATCG+CGG | 0.566733 | 5.2:+61338180 | MS.gene50249:CDS |
| GAAATATTTGAGGAGATTGG+CGG | 0.569501 | 5.2:+61338296 | MS.gene50249:CDS |
| GAGTGTTATTGCTCCTAGTG+AGG | 0.570189 | 5.2:+61338458 | MS.gene50249:CDS |
| TCCACCGGCGAAACGAAGCT+CGG | 0.571673 | 5.2:-61337799 | None:intergenic |
| TGAAATTCGCGGTGATGCTG+CGG | 0.571939 | 5.2:-61337844 | None:intergenic |
| TGCAACCGGCGAAAGGTGGG+AGG | 0.575320 | 5.2:+61338484 | MS.gene50249:CDS |
| CGAAGCTCGGCGATGAGAGA+GGG | 0.575452 | 5.2:-61337786 | None:intergenic |
| ATGTGGTGACGCTTTCTGAT+CGG | 0.577142 | 5.2:+61338160 | MS.gene50249:CDS |
| GGAAGATGATTCACCGTCGA+AGG | 0.578144 | 5.2:-61337905 | None:intergenic |
| GCCGGTTGCACAACCTCACT+AGG | 0.580249 | 5.2:-61338471 | None:intergenic |
| GTAAATCATACTCTAACTAC+CGG | 0.585584 | 5.2:+61337719 | MS.gene50249:CDS |
| GAGGTTGTGCAACCGGCGAA+AGG | 0.589926 | 5.2:+61338477 | MS.gene50249:CDS |
| GGTTCAAGGGAAGCTTCCGT+TGG | 0.590903 | 5.2:+61338365 | MS.gene50249:CDS |
| AAGGTGGGAGGGATTTGTTG+AGG | 0.594759 | 5.2:+61338496 | MS.gene50249:CDS |
| GGTTATCGGAGGCGTATCGC+GGG | 0.598439 | 5.2:+61338181 | MS.gene50249:CDS |
| AGCTGCCGAAGCAGTTGATG+GGG | 0.602715 | 5.2:+61338433 | MS.gene50249:CDS |
| GACGGTGAATCATCTTCCAA+TGG | 0.607222 | 5.2:+61337910 | MS.gene50249:CDS |
| ACACGAAGCTTCTCCGATGG+AGG | 0.616897 | 5.2:+61337946 | MS.gene50249:CDS |
| CCGACACGAAGCTTCTCCGA+TGG | 0.619775 | 5.2:+61337943 | MS.gene50249:CDS |
| TGCTGCGGCGGAGATAAAAG+TGG | 0.620718 | 5.2:-61337829 | None:intergenic |
| GCAACCGGCGAAAGGTGGGA+GGG | 0.621908 | 5.2:+61338485 | MS.gene50249:CDS |
| AATTCGCGGTGATGCTGCGG+CGG | 0.624276 | 5.2:-61337841 | None:intergenic |
| CGGCGGAGATAAAAGTGGAT+CGG | 0.629103 | 5.2:-61337824 | None:intergenic |
| AAAAGTGGATCGGAATCCAC+CGG | 0.629137 | 5.2:-61337814 | None:intergenic |
| AGCTCGGCGATGAGAGAGGG+TGG | 0.634590 | 5.2:-61337783 | None:intergenic |
| AGAGCGTGGACATCACGCTC+CGG | 0.645909 | 5.2:-61337738 | None:intergenic |
| CCATCGGAGAAGCTTCGTGT+CGG | 0.646506 | 5.2:-61337943 | None:intergenic |
| AAGGCCGGATAAGAGTATTG+TGG | 0.649282 | 5.2:+61338218 | MS.gene50249:CDS |
| TGAAAATAACAACACCTCAG+AGG | 0.652957 | 5.2:+61337612 | MS.gene50249:CDS |
| ATTGTGAGAATCAGAGAGCG+TGG | 0.654194 | 5.2:-61337752 | None:intergenic |
| GCTTTCTGATCGGTTATCGG+AGG | 0.661776 | 5.2:+61338170 | MS.gene50249:CDS |
| GCTGCCGAAGCAGTTGATGG+GGG | 0.662311 | 5.2:+61338434 | MS.gene50249:CDS |
| ACATCCGTCGAACCCACCAA+CGG | 0.664667 | 5.2:-61338381 | None:intergenic |
| GTAACATAACTATTACTACC+AGG | 0.682772 | 5.2:-61338063 | None:intergenic |
| AGGGTGAAAATGTTCCTCTG+AGG | 0.716139 | 5.2:-61337626 | None:intergenic |
| TCTATGGCGAATGATTGGGG+TGG | 0.719791 | 5.2:+61338540 | MS.gene50249:CDS |
| TTACGTATTTGATTACGACG+AGG | 0.754185 | 5.2:+61338082 | MS.gene50249:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTCTGAGTATTTGAGAATTA+CGG | + | chr5.2:61337996-61338015 | MS.gene50249:CDS | 25.0% |
| AGTTTCTTGCAAAGAAAGAA+AGG | + | chr5.2:61338595-61338614 | MS.gene50249:CDS | 30.0% | |
| GAACTTGAACAACAAATCAA+TGG | + | chr5.2:61338624-61338643 | MS.gene50249:CDS | 30.0% | |
| GTAAATCATACTCTAACTAC+CGG | + | chr5.2:61337719-61337738 | MS.gene50249:CDS | 30.0% | |
| GTAACATAACTATTACTACC+AGG | - | chr5.2:61338066-61338085 | None:intergenic | 30.0% | |
| GTTTCTTGCAAAGAAAGAAA+GGG | + | chr5.2:61338596-61338615 | MS.gene50249:CDS | 30.0% | |
| !!! | AATTAGGGTTTTGAAATTCG+CGG | - | chr5.2:61337858-61337877 | None:intergenic | 30.0% |
| GAAATATTTGAGGAGATTGG+CGG | + | chr5.2:61338296-61338315 | MS.gene50249:CDS | 35.0% | |
| GGAGAAATATTTGAGGAGAT+TGG | + | chr5.2:61338293-61338312 | MS.gene50249:CDS | 35.0% | |
| TCGAAGAAGGTTTAAAGATG+TGG | + | chr5.2:61338143-61338162 | MS.gene50249:CDS | 35.0% | |
| TGAAAATAACAACACCTCAG+AGG | + | chr5.2:61337612-61337631 | MS.gene50249:CDS | 35.0% | |
| TTACGTATTTGATTACGACG+AGG | + | chr5.2:61338082-61338101 | MS.gene50249:CDS | 35.0% | |
| ! | TGGCATTGGAGAAATATTTG+AGG | + | chr5.2:61338286-61338305 | MS.gene50249:CDS | 35.0% |
| !! | GGATTTGTTGAGGTTGTTTA+AGG | + | chr5.2:61338506-61338525 | MS.gene50249:CDS | 35.0% |
| !! | TGAGTTTAGAGTGTTTTTGC+AGG | + | chr5.2:61338344-61338363 | MS.gene50249:CDS | 35.0% |
| AATTCGAATTCGATTGTGCC+TGG | + | chr5.2:61338045-61338064 | MS.gene50249:CDS | 40.0% | |
| AATTCGTTCCCTCCAAAATC+CGG | - | chr5.2:61338117-61338136 | None:intergenic | 40.0% | |
| CTCTCCACAATACTCTTATC+CGG | - | chr5.2:61338225-61338244 | None:intergenic | 40.0% | |
| GAATTCTCTTGCTCCTTAAC+CGG | - | chr5.2:61338030-61338049 | None:intergenic | 40.0% | |
| GAGAATTACGGTTTCGAATC+CGG | + | chr5.2:61338008-61338027 | MS.gene50249:CDS | 40.0% | |
| TAAGGAGTTGAAGCAGTCTA+TGG | + | chr5.2:61338524-61338543 | MS.gene50249:CDS | 40.0% | |
| TCTCGAAAAAACTCCTCCAT+CGG | - | chr5.2:61337962-61337981 | None:intergenic | 40.0% | |
| TTATCTTCCTCGACAACAAG+CGG | - | chr5.2:61338573-61338592 | None:intergenic | 40.0% | |
| ! | ACGAATTTACCGGATTTTGG+AGG | + | chr5.2:61338105-61338124 | MS.gene50249:CDS | 40.0% |
| ! | AGGACGAATTTACCGGATTT+TGG | + | chr5.2:61338102-61338121 | MS.gene50249:CDS | 40.0% |
| ! | CGAATTTACCGGATTTTGGA+GGG | + | chr5.2:61338106-61338125 | MS.gene50249:CDS | 40.0% |
| ! | GCAATTTTCACTTCCTTCGA+CGG | + | chr5.2:61337892-61337911 | MS.gene50249:CDS | 40.0% |
| ! | TGTCGGAGTATTAACACCAT+TGG | - | chr5.2:61337929-61337948 | None:intergenic | 40.0% |
| !! | AGAGTGTTTTTGCAGGTTCA+AGG | + | chr5.2:61338351-61338370 | MS.gene50249:CDS | 40.0% |
| !! | CATCGTTTGTTTCTGAGAGA+GGG | - | chr5.2:61337648-61337667 | None:intergenic | 40.0% |
| !! | GAGTGTTTTTGCAGGTTCAA+GGG | + | chr5.2:61338352-61338371 | MS.gene50249:CDS | 40.0% |
| !! | GATTTTGGAGGGAACGAATT+CGG | + | chr5.2:61338117-61338136 | MS.gene50249:CDS | 40.0% |
| !! | TAAGAGTATTGTGGAGAGTC+AGG | + | chr5.2:61338227-61338246 | MS.gene50249:CDS | 40.0% |
| !! | TCATCGTTTGTTTCTGAGAG+AGG | - | chr5.2:61337649-61337668 | None:intergenic | 40.0% |
| !!! | TGGAGGAGTTTTTTCGAGAT+CGG | + | chr5.2:61337963-61337982 | MS.gene50249:CDS | 40.0% |
| AAAAGTGGATCGGAATCCAC+CGG | - | chr5.2:61337817-61337836 | None:intergenic | 45.0% | |
| AATCAATGGTGCTTCTCAGC+AGG | + | chr5.2:61338638-61338657 | MS.gene50249:CDS | 45.0% | |
| ACAATACTCTTATCCGGCCT+TGG | - | chr5.2:61338219-61338238 | None:intergenic | 45.0% | |
| AGCAGTCTATGGCGAATGAT+TGG | + | chr5.2:61338535-61338554 | MS.gene50249:CDS | 45.0% | |
| AGGGTGAAAATGTTCCTCTG+AGG | - | chr5.2:61337629-61337648 | None:intergenic | 45.0% | |
| ATTGTGAGAATCAGAGAGCG+TGG | - | chr5.2:61337755-61337774 | None:intergenic | 45.0% | |
| CAGTCTATGGCGAATGATTG+GGG | + | chr5.2:61338537-61338556 | MS.gene50249:CDS | 45.0% | |
| CGTCTGCGTTAGGTGAATTA+GGG | - | chr5.2:61337873-61337892 | None:intergenic | 45.0% | |
| GACGCTTTCTGATCGGTTAT+CGG | + | chr5.2:61338167-61338186 | MS.gene50249:CDS | 45.0% | |
| GACGGTGAATCATCTTCCAA+TGG | + | chr5.2:61337910-61337929 | MS.gene50249:CDS | 45.0% | |
| GCAGTCTATGGCGAATGATT+GGG | + | chr5.2:61338536-61338555 | MS.gene50249:CDS | 45.0% | |
| GTGAAAATTGCGTCTGCGTT+AGG | - | chr5.2:61337883-61337902 | None:intergenic | 45.0% | |
| TACGACGAGGACGAATTTAC+CGG | + | chr5.2:61338095-61338114 | MS.gene50249:CDS | 45.0% | |
| TACGGTTTCGAATCCGGTTA+AGG | + | chr5.2:61338014-61338033 | MS.gene50249:CDS | 45.0% | |
| TCATCACTCTTCCGAATCAC+CGG | - | chr5.2:61338327-61338346 | None:intergenic | 45.0% | |
| ! | ATGTGGTGACGCTTTCTGAT+CGG | + | chr5.2:61338160-61338179 | MS.gene50249:CDS | 45.0% |
| ! | GAGTGTTATTGCTCCTAGTG+AGG | + | chr5.2:61338458-61338477 | MS.gene50249:CDS | 45.0% |
| !! | AAGGCCGGATAAGAGTATTG+TGG | + | chr5.2:61338218-61338237 | MS.gene50249:CDS | 45.0% |
| !! | ACGAATTCGGTGTTCGAAGA+AGG | + | chr5.2:61338130-61338149 | MS.gene50249:CDS | 45.0% |
| !! | GCTTGTTGTCGAGGAAGATA+AGG | + | chr5.2:61338572-61338591 | MS.gene50249:CDS | 45.0% |
| !!! | GTTTTTTATACCGCCAAGGC+CGG | + | chr5.2:61338203-61338222 | MS.gene50249:CDS | 45.0% |
| AAGCTGCCGAAGCAGTTGAT+GGG | + | chr5.2:61338432-61338451 | MS.gene50249:CDS | 50.0% | |
| ATACTCTTATCCGGCCTTGG+CGG | - | chr5.2:61338216-61338235 | None:intergenic | 50.0% | |
| CGGCGGAGATAAAAGTGGAT+CGG | - | chr5.2:61337827-61337846 | None:intergenic | 50.0% | |
| GAGTCAGGTGATGCAAAAGC+AGG | + | chr5.2:61338242-61338261 | MS.gene50249:CDS | 50.0% | |
| GCGTCTGCGTTAGGTGAATT+AGG | - | chr5.2:61337874-61337893 | None:intergenic | 50.0% | |
| GCTTTCTGATCGGTTATCGG+AGG | + | chr5.2:61338170-61338189 | MS.gene50249:CDS | 50.0% | |
| GGAAGATGATTCACCGTCGA+AGG | - | chr5.2:61337908-61337927 | None:intergenic | 50.0% | |
| TCCTAGTGAGGTTGTGCAAC+CGG | + | chr5.2:61338470-61338489 | MS.gene50249:CDS | 50.0% | |
| TCTATGGCGAATGATTGGGG+TGG | + | chr5.2:61338540-61338559 | MS.gene50249:CDS | 50.0% | |
| TGAAATTCGCGGTGATGCTG+CGG | - | chr5.2:61337847-61337866 | None:intergenic | 50.0% | |
| ! | GTTTGTTGAGCAGAGGAGAG+TGG | + | chr5.2:61338266-61338285 | MS.gene50249:CDS | 50.0% |
| !! | AAGGTGGGAGGGATTTGTTG+AGG | + | chr5.2:61338496-61338515 | MS.gene50249:CDS | 50.0% |
| !! | AGCAGGAGTTTGTTGAGCAG+AGG | + | chr5.2:61338259-61338278 | MS.gene50249:CDS | 50.0% |
| !! | TTCTAAGCCGCTTGTTGTCG+AGG | + | chr5.2:61338563-61338582 | MS.gene50249:CDS | 50.0% |
| !!! | GCGGGTTTTTTATACCGCCA+AGG | + | chr5.2:61338199-61338218 | MS.gene50249:CDS | 50.0% |
| AAATCCCTCCCACCTTTCGC+CGG | - | chr5.2:61338492-61338511 | None:intergenic | 55.0% | |
| ACACGAAGCTTCTCCGATGG+AGG | + | chr5.2:61337946-61337965 | MS.gene50249:CDS | 55.0% | |
| ACATCCGTCGAACCCACCAA+CGG | - | chr5.2:61338384-61338403 | None:intergenic | 55.0% | |
| CAAGGGAAGCTTCCGTTGGT+GGG | + | chr5.2:61338369-61338388 | MS.gene50249:CDS | 55.0% | |
| CCATCGGAGAAGCTTCGTGT+CGG | - | chr5.2:61337946-61337965 | None:intergenic | 55.0% | |
| CTCTCCCCCATCAACTGCTT+CGG | - | chr5.2:61338441-61338460 | None:intergenic | 55.0% | |
| GAAGCTGCCGAAGCAGTTGA+TGG | + | chr5.2:61338431-61338450 | MS.gene50249:CDS | 55.0% | |
| GGTTCAAGGGAAGCTTCCGT+TGG | + | chr5.2:61338365-61338384 | MS.gene50249:CDS | 55.0% | |
| TCAAGGGAAGCTTCCGTTGG+TGG | + | chr5.2:61338368-61338387 | MS.gene50249:CDS | 55.0% | |
| TGAGCAGAGGAGAGTGGCAT+TGG | + | chr5.2:61338272-61338291 | MS.gene50249:CDS | 55.0% | |
| TGCTGCGGCGGAGATAAAAG+TGG | - | chr5.2:61337832-61337851 | None:intergenic | 55.0% | |
| TTCGACGGATGTGGCTTCGA+GGG | + | chr5.2:61338392-61338411 | MS.gene50249:CDS | 55.0% | |
| TTGTGCAACCGGCGAAAGGT+GGG | + | chr5.2:61338481-61338500 | MS.gene50249:CDS | 55.0% | |
| ! | AGCTGCCGAAGCAGTTGATG+GGG | + | chr5.2:61338433-61338452 | MS.gene50249:CDS | 55.0% |
| ! | GAGGAGATTGGCGGATCATC+CGG | + | chr5.2:61338305-61338324 | MS.gene50249:CDS | 55.0% |
| ! | GGATGTGGCTTCGAGGGTTT+TGG | + | chr5.2:61338398-61338417 | MS.gene50249:CDS | 55.0% |
| ! | TGGCGGATCATCCGGTGATT+CGG | + | chr5.2:61338313-61338332 | MS.gene50249:CDS | 55.0% |
| !!! | GTGGCTTCGAGGGTTTTGGA+TGG | + | chr5.2:61338402-61338421 | MS.gene50249:CDS | 55.0% |
| !!! | TTCGAGGGTTTTGGATGGCG+CGG | + | chr5.2:61338407-61338426 | MS.gene50249:CDS | 55.0% |
| AATTCGCGGTGATGCTGCGG+CGG | - | chr5.2:61337844-61337863 | None:intergenic | 60.0% | |
| ACGAAGCTCGGCGATGAGAG+AGG | - | chr5.2:61337790-61337809 | None:intergenic | 60.0% | |
| AGAGCGTGGACATCACGCTC+CGG | - | chr5.2:61337741-61337760 | None:intergenic | 60.0% | |
| ATCGCCGAGCTTCGTTTCGC+CGG | + | chr5.2:61337795-61337814 | MS.gene50249:CDS | 60.0% | |
| CCGACACGAAGCTTCTCCGA+TGG | + | chr5.2:61337943-61337962 | MS.gene50249:CDS | 60.0% | |
| CGAAGCTCGGCGATGAGAGA+GGG | - | chr5.2:61337789-61337808 | None:intergenic | 60.0% | |
| GAGGTTGTGCAACCGGCGAA+AGG | + | chr5.2:61338477-61338496 | MS.gene50249:CDS | 60.0% | |
| GCCGGTTGCACAACCTCACT+AGG | - | chr5.2:61338474-61338493 | None:intergenic | 60.0% | |
| GTTCGACGGATGTGGCTTCG+AGG | + | chr5.2:61338391-61338410 | MS.gene50249:CDS | 60.0% | |
| GTTGTGCAACCGGCGAAAGG+TGG | + | chr5.2:61338480-61338499 | MS.gene50249:CDS | 60.0% | |
| TCCACCGGCGAAACGAAGCT+CGG | - | chr5.2:61337802-61337821 | None:intergenic | 60.0% | |
| ! | CGGTTATCGGAGGCGTATCG+CGG | + | chr5.2:61338180-61338199 | MS.gene50249:CDS | 60.0% |
| ! | GGTTATCGGAGGCGTATCGC+GGG | + | chr5.2:61338181-61338200 | MS.gene50249:CDS | 60.0% |
| !! | GCTGCCGAAGCAGTTGATGG+GGG | + | chr5.2:61338434-61338453 | MS.gene50249:CDS | 60.0% |
| !! | GCTTCCGTTGGTGGGTTCGA+CGG | + | chr5.2:61338377-61338396 | MS.gene50249:CDS | 60.0% |
| !! | GTTGGTGGGTTCGACGGATG+TGG | + | chr5.2:61338383-61338402 | MS.gene50249:CDS | 60.0% |
| AGCTCGGCGATGAGAGAGGG+TGG | - | chr5.2:61337786-61337805 | None:intergenic | 65.0% | |
| GCAACCGGCGAAAGGTGGGA+GGG | + | chr5.2:61338485-61338504 | MS.gene50249:CDS | 65.0% | |
| TGCAACCGGCGAAAGGTGGG+AGG | + | chr5.2:61338484-61338503 | MS.gene50249:CDS | 65.0% | |
| GCCGAGCTTCGTTTCGCCGG+TGG | + | chr5.2:61337798-61337817 | MS.gene50249:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 61337601 | 61338665 | 61337601 | ID=MS.gene50249 |
| chr5.2 | mRNA | 61337601 | 61338665 | 61337601 | ID=MS.gene50249.t1;Parent=MS.gene50249 |
| chr5.2 | exon | 61337601 | 61338665 | 61337601 | ID=MS.gene50249.t1.exon1;Parent=MS.gene50249.t1 |
| chr5.2 | CDS | 61337601 | 61338665 | 61337601 | ID=cds.MS.gene50249.t1;Parent=MS.gene50249.t1 |
| Gene Sequence |
| Protein sequence |
