AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50434


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50434.t1 MTR_4g021825 94.136 324 19 0 1 324 1 324 0.0 612
MS.gene50434.t1 MTR_7g062150 74.172 302 75 2 25 324 1 301 2.35e-166 465
MS.gene50434.t1 MTR_4g021800 75.685 292 62 3 34 324 13 296 2.53e-159 447
MS.gene50434.t1 MTR_4g021800 76.062 259 53 3 67 324 1 251 1.02e-139 395
MS.gene50434.t1 MTR_7g062150 72.727 231 60 2 25 253 1 230 1.08e-120 347
MS.gene50434.t1 MTR_4g021800 74.208 221 51 2 34 253 13 228 5.92e-115 332
MS.gene50434.t1 MTR_2g097520 54.795 292 120 2 34 324 11 291 1.52e-112 328
MS.gene50434.t1 MTR_4g064380 53.793 290 113 3 35 324 13 281 8.15e-108 316
MS.gene50434.t1 MTR_1g085570 49.135 289 98 2 36 324 18 257 7.95e-95 282
MS.gene50434.t1 MTR_1g085570 49.135 289 98 2 36 324 10 249 1.12e-94 281
MS.gene50434.t1 MTR_1g085570 48.966 290 98 3 36 324 10 250 7.05e-93 276
MS.gene50434.t1 MTR_1g085570 49.167 240 73 2 36 275 10 200 3.32e-77 236
MS.gene50434.t1 MTR_1g104610 42.182 275 113 5 31 302 3 234 4.51e-70 219
MS.gene50434.t1 MTR_1g104610 43.496 246 95 4 31 275 3 205 4.69e-63 200
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50434.t1 AT5G02230 60.248 322 102 3 6 324 19 317 6.99e-128 368
MS.gene50434.t1 AT5G02230 62.376 303 88 3 25 324 1 280 1.26e-126 363
MS.gene50434.t1 AT5G02230 62.376 303 88 3 25 324 1 280 1.26e-126 363
MS.gene50434.t1 AT5G59480 55.000 300 111 3 25 320 1 280 2.13e-115 335
MS.gene50434.t1 AT5G59480 55.000 300 111 3 25 320 1 280 2.13e-115 335
MS.gene50434.t1 AT5G59480 55.000 300 111 3 25 320 1 280 2.13e-115 335
MS.gene50434.t1 AT5G59480 55.000 300 111 3 25 320 1 280 2.13e-115 335
MS.gene50434.t1 AT5G59480 55.000 300 110 4 25 320 1 279 2.28e-113 330
MS.gene50434.t1 AT5G59490 51.148 305 105 5 25 324 1 266 3.30e-96 286
MS.gene50434.t1 AT3G62040 49.808 261 79 5 67 324 1 212 2.03e-78 238
MS.gene50434.t1 AT5G59490 53.386 251 78 4 25 275 1 212 1.20e-77 236
MS.gene50434.t1 AT2G32150 40.809 272 116 3 31 302 3 229 1.18e-73 228
MS.gene50434.t1 AT2G32150 42.017 238 96 2 38 275 7 202 9.94e-62 196
MS.gene50434.t1 AT2G32150 40.826 218 87 2 38 255 7 182 7.74e-53 172

Find 63 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGAAGGCAATCATATTT+TGG 0.184331 4.4:-79738683 None:intergenic
ACCCTTCTTTACAAGAATTA+TGG 0.236813 4.4:+79739004 MS.gene50434:CDS
GAAGATGACATTGAGTTTCT+AGG 0.281835 4.4:+79739573 MS.gene50434:CDS
AACAACTCTAGCAGGGTTAA+AGG 0.290235 4.4:+79739027 MS.gene50434:CDS
CTGAGGCAATACCTGATCTA+TGG 0.301808 4.4:+79740254 MS.gene50434:CDS
TTCATTTCTATTCAGGCAAT+TGG 0.316082 4.4:+79739134 MS.gene50434:intron
ACAACTTACAAGTTTCCTAT+AGG 0.317796 4.4:-79739348 None:intergenic
ACTTTGTATCCACTCAGTTC+TGG 0.328194 4.4:+79738811 MS.gene50434:CDS
TGGTAGGATTCCACTGGGAT+TGG 0.351011 4.4:-79739679 None:intergenic
GGTAGGATTCCACTGGGATT+GGG 0.365764 4.4:-79739678 None:intergenic
CAACTTACAAGTTTCCTATA+GGG 0.370712 4.4:-79739347 None:intergenic
GGATTAGAAGATTGCTTTGA+AGG 0.372172 4.4:+79739495 MS.gene50434:CDS
TTGCAAACAATTGATGTCTT+TGG 0.375139 4.4:-79739699 None:intergenic
TGAAACCAGACCCAGTTCTA+AGG 0.386637 4.4:+79739306 MS.gene50434:CDS
TGTTGATGAGCCTGCCCTAT+AGG 0.387214 4.4:+79739333 MS.gene50434:CDS
CTTAAGACACTAAACATACT+TGG 0.390861 4.4:+79739474 MS.gene50434:CDS
TTCCATAATTCTTGTAAAGA+AGG 0.391744 4.4:-79739006 None:intergenic
AAAAGGTTCTCTTAGCGAAA+TGG 0.408686 4.4:+79738634 MS.gene50434:intron
TGTCTTTGGTAGGATTCCAC+TGG 0.425417 4.4:-79739685 None:intergenic
TTATCAATCACCAATCGTTC+TGG 0.428300 4.4:+79738049 MS.gene50434:CDS
ATCAGAAAATGCCATTCAAT+TGG 0.440833 4.4:+79739725 MS.gene50434:CDS
TCTGGTTTCAAGTTCTCATA+AGG 0.442699 4.4:-79739293 None:intergenic
GAGACAACAGTAACTGCTTA+AGG 0.446956 4.4:+79740325 MS.gene50434:CDS
AGAACGATTGGTGATTGATA+AGG 0.459665 4.4:-79738047 None:intergenic
AATTATGGAACAACTCTAGC+AGG 0.465228 4.4:+79739019 MS.gene50434:CDS
GTATTGCCTCAGGAAGGTTA+TGG 0.470844 4.4:-79740243 None:intergenic
GAGACAATGCTCCTGTGGAT+TGG 0.472943 4.4:-79739543 None:intergenic
GAACGATTGGTGATTGATAA+GGG 0.476873 4.4:-79738046 None:intergenic
AAGTCAGCCTCCCATAGATC+AGG 0.477248 4.4:-79740265 None:intergenic
TTACAGTTCTATGTGGGTCA+AGG 0.487086 4.4:-79739764 None:intergenic
TCCATAATTCTTGTAAAGAA+GGG 0.493278 4.4:-79739005 None:intergenic
GGCACATCACAAAGAGTTCA+AGG 0.501955 4.4:+79740196 MS.gene50434:CDS
TACATTGATCGCAGACTACA+TGG 0.502304 4.4:+79738937 MS.gene50434:intron
AAATCAGAAGTGGTGTACAC+TGG 0.506025 4.4:+79740289 MS.gene50434:CDS
CATAGATCAGGTATTGCCTC+AGG 0.510990 4.4:-79740253 None:intergenic
TTACAAGTTTCCTATAGGGC+AGG 0.519783 4.4:-79739343 None:intergenic
TTGACTATGACGAACTTCAC+AGG 0.521165 4.4:+79739165 MS.gene50434:CDS
TGGGATTGGGTTGAGCAAGA+TGG 0.525761 4.4:-79739665 None:intergenic
CATTAGCTTACCAGAACGAT+TGG 0.533956 4.4:-79738059 None:intergenic
AGTTCTATGTGGGTCAAGGT+TGG 0.539209 4.4:-79739760 None:intergenic
GTCTTTGGTAGGATTCCACT+GGG 0.543749 4.4:-79739684 None:intergenic
TCAAGGTGCAGATTATGCAT+TGG 0.546977 4.4:+79740213 MS.gene50434:CDS
ATAAGGGCATAGAAGAAGAG+AGG 0.554219 4.4:-79738030 None:intergenic
AGTGGGACTCGACACTGTGC+TGG 0.555191 4.4:+79739921 MS.gene50434:CDS
AAACAATTGATGTCTTTGGT+AGG 0.556880 4.4:-79739695 None:intergenic
GAGGAAAGATGATGTTTGCA+TGG 0.563909 4.4:-79738011 None:intergenic
GACTACATGGAAGAAATGCT+TGG 0.567750 4.4:+79738950 MS.gene50434:intron
AATCAGAAGTGGTGTACACT+GGG 0.567947 4.4:+79740290 MS.gene50434:CDS
TGAGGCAATACCTGATCTAT+GGG 0.570617 4.4:+79740255 MS.gene50434:CDS
AGACTCTTAATCCAATCCAC+AGG 0.582574 4.4:+79739532 MS.gene50434:CDS
CATCTGAGACAATGCTCCTG+TGG 0.586854 4.4:-79739548 None:intergenic
AGTGTCCGCAACATACAAGC+TGG 0.586963 4.4:+79739892 MS.gene50434:CDS
GGCTGACTTAAAATCAGAAG+TGG 0.614175 4.4:+79740279 MS.gene50434:CDS
CATACAAGCTGGAAAACAAG+TGG 0.628481 4.4:+79739903 MS.gene50434:CDS
TCAATAGATCTTCACAAATG+CGG 0.630764 4.4:+79739437 MS.gene50434:intron
GATCAGGTATTGCCTCAGGA+AGG 0.643927 4.4:-79740249 None:intergenic
ATTATGGAACAACTCTAGCA+GGG 0.644459 4.4:+79739020 MS.gene50434:CDS
GGCAATACCTGATCTATGGG+AGG 0.662711 4.4:+79740258 MS.gene50434:CDS
ATACAAGCTGGAAAACAAGT+GGG 0.683793 4.4:+79739904 MS.gene50434:CDS
TTACTGTTGTCTCTACAGCA+AGG 0.685440 4.4:-79740315 None:intergenic
TTTGCAAGACCAGAACTGAG+TGG 0.697387 4.4:-79738820 None:intergenic
AAGCATCCATAACCTTCCTG+AGG 0.706931 4.4:+79740237 MS.gene50434:CDS
CTTGCTCAACCCAATCCCAG+TGG 0.708054 4.4:+79739669 MS.gene50434:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATATTCAAAATTTTAAAA+CGG - chr4.4:79739097-79739116 None:intergenic 10.0%
!! AAATCAAATGATAATTACAA+TGG - chr4.4:79738138-79738157 None:intergenic 15.0%
!! TGAAAATGAAAATTTCTATT+TGG - chr4.4:79738743-79738762 None:intergenic 15.0%
!!! TTTTAAAAGTTCATGATAAT+TGG - chr4.4:79738209-79738228 None:intergenic 15.0%
!! AAAAAATGCTATATATGCAT+GGG - chr4.4:79738103-79738122 None:intergenic 20.0%
!! AAAATGGAATCAATAGAATA+AGG + chr4.4:79739379-79739398 MS.gene50434:intron 20.0%
!! AAACAAAGATAGATCATAAA+GGG - chr4.4:79739798-79739817 None:intergenic 20.0%
!! ATAGAAATGAAACAATAAAC+AGG - chr4.4:79739125-79739144 None:intergenic 20.0%
!! CACTTAAAAATACATATACA+TGG - chr4.4:79739223-79739242 None:intergenic 20.0%
!! TAAAAAATGCTATATATGCA+TGG - chr4.4:79738104-79738123 None:intergenic 20.0%
!! TAAGTTGTTTATAACCAAAA+TGG + chr4.4:79739363-79739382 MS.gene50434:intron 20.0%
!! TTATTGTTTCATTTCTATTC+AGG + chr4.4:79739127-79739146 MS.gene50434:intron 20.0%
!!! ATTTGATTTTCAATCATCAT+TGG + chr4.4:79738149-79738168 MS.gene50434:intron 20.0%
!!! TGTTGTTTATTCTATGTAAA+AGG + chr4.4:79738617-79738636 MS.gene50434:intron 20.0%
!!! TTATTCTATTGATTCCATTT+TGG - chr4.4:79739380-79739399 None:intergenic 20.0%
! AACAAGTAATTTATGAGTTG+TGG - chr4.4:79740158-79740177 None:intergenic 25.0%
! CCATTTCACAGAAAAATATA+TGG - chr4.4:79739069-79739088 None:intergenic 25.0%
! GAAACAAAGATAGATCATAA+AGG - chr4.4:79739799-79739818 None:intergenic 25.0%
! TACAAAATGTTGTCAAATAG+CGG - chr4.4:79740027-79740046 None:intergenic 25.0%
! TCCATAATTCTTGTAAAGAA+GGG - chr4.4:79739008-79739027 None:intergenic 25.0%
! TGAAATACTTACCAAAAAGA+AGG - chr4.4:79738700-79738719 None:intergenic 25.0%
! TTCCATAATTCTTGTAAAGA+AGG - chr4.4:79739009-79739028 None:intergenic 25.0%
!! AAAAGAAGGCAATCATATTT+TGG - chr4.4:79738686-79738705 None:intergenic 25.0%
!! AAATATGATTGCCTTCTTTT+TGG + chr4.4:79738686-79738705 MS.gene50434:CDS 25.0%
!! ATTTTCTTACAGTTCTATGT+GGG - chr4.4:79739773-79739792 None:intergenic 25.0%
!! CATAAATCATCAGATTTTCT+TGG - chr4.4:79738983-79739002 None:intergenic 25.0%
!! CCATATATTTTTCTGTGAAA+TGG + chr4.4:79739066-79739085 MS.gene50434:intron 25.0%
!!! TTATTCTCAACGTTTTTTCA+TGG - chr4.4:79738514-79738533 None:intergenic 25.0%
AAACAATTGATGTCTTTGGT+AGG - chr4.4:79739698-79739717 None:intergenic 30.0%
AAATCTGCAGAACAATATCA+TGG - chr4.4:79738784-79738803 None:intergenic 30.0%
ACAACTTACAAGTTTCCTAT+AGG - chr4.4:79739351-79739370 None:intergenic 30.0%
ACCCTTCTTTACAAGAATTA+TGG + chr4.4:79739004-79739023 MS.gene50434:CDS 30.0%
AGCAAATTAAAACCTAGTCA+TGG - chr4.4:79738357-79738376 None:intergenic 30.0%
ATCAGAAAATGCCATTCAAT+TGG + chr4.4:79739725-79739744 MS.gene50434:CDS 30.0%
CAACTTACAAGTTTCCTATA+GGG - chr4.4:79739350-79739369 None:intergenic 30.0%
CAGAAAAATATATGGACAGT+AGG - chr4.4:79739061-79739080 None:intergenic 30.0%
CTGCAACAAAAGTTATGTTA+TGG - chr4.4:79738489-79738508 None:intergenic 30.0%
CTTAAGACACTAAACATACT+TGG + chr4.4:79739474-79739493 MS.gene50434:CDS 30.0%
TAAAGCGTAGTACAAATGTT+TGG + chr4.4:79738454-79738473 MS.gene50434:intron 30.0%
TCAATAGATCTTCACAAATG+CGG + chr4.4:79739437-79739456 MS.gene50434:intron 30.0%
TTCATTTCTATTCAGGCAAT+TGG + chr4.4:79739134-79739153 MS.gene50434:intron 30.0%
TTGCAAACAATTGATGTCTT+TGG - chr4.4:79739702-79739721 None:intergenic 30.0%
! AATTGAATGGCATTTTCTGA+TGG - chr4.4:79739726-79739745 None:intergenic 30.0%
! ATCAACATTTTCCTTAGAAC+TGG - chr4.4:79739320-79739339 None:intergenic 30.0%
! GATTTTCTTACAGTTCTATG+TGG - chr4.4:79739774-79739793 None:intergenic 30.0%
! GCATGTCGACAAAATTTTAA+AGG + chr4.4:79738844-79738863 MS.gene50434:CDS 30.0%
! TCAACATTTTCCTTAGAACT+GGG - chr4.4:79739319-79739338 None:intergenic 30.0%
! TCATTTTCAGTTGTTCTTTG+AGG + chr4.4:79739867-79739886 MS.gene50434:intron 30.0%
!! TATTTTGAGAGCCAATTGAA+TGG - chr4.4:79739739-79739758 None:intergenic 30.0%
!!! AGGCAATCATATTTTGGTTT+TGG - chr4.4:79738680-79738699 None:intergenic 30.0%
AAAAGGTTCTCTTAGCGAAA+TGG + chr4.4:79738634-79738653 MS.gene50434:intron 35.0%
AATTATGGAACAACTCTAGC+AGG + chr4.4:79739019-79739038 MS.gene50434:CDS 35.0%
ATACAAGCTGGAAAACAAGT+GGG + chr4.4:79739904-79739923 MS.gene50434:CDS 35.0%
ATTATGGAACAACTCTAGCA+GGG + chr4.4:79739020-79739039 MS.gene50434:CDS 35.0%
CTAAAATCTTGACCATGACT+AGG + chr4.4:79738342-79738361 MS.gene50434:intron 35.0%
CTGGCAGTTTATTTAAACAG+AGG - chr4.4:79740113-79740132 None:intergenic 35.0%
GAAGATGACATTGAGTTTCT+AGG + chr4.4:79739573-79739592 MS.gene50434:CDS 35.0%
GGATTAGAAGATTGCTTTGA+AGG + chr4.4:79739495-79739514 MS.gene50434:CDS 35.0%
GTTATAGAGCTATTACGTAG+CGG - chr4.4:79740091-79740110 None:intergenic 35.0%
TATTAAAAGTCACGACGCAA+CGG + chr4.4:79738315-79738334 MS.gene50434:intron 35.0%
TTATCAATCACCAATCGTTC+TGG + chr4.4:79738049-79738068 MS.gene50434:CDS 35.0%
! AACAAGTGAAGCATTAGTAG+TGG - chr4.4:79739413-79739432 None:intergenic 35.0%
! AGAACGATTGGTGATTGATA+AGG - chr4.4:79738050-79738069 None:intergenic 35.0%
! CTAGTCATGGTCAAGATTTT+AGG - chr4.4:79738344-79738363 None:intergenic 35.0%
! GAACGATTGGTGATTGATAA+GGG - chr4.4:79738049-79738068 None:intergenic 35.0%
! TTGCTTGCTTAGTTCTTCAT+TGG + chr4.4:79739837-79739856 MS.gene50434:intron 35.0%
!! TCTGGTTTCAAGTTCTCATA+AGG - chr4.4:79739296-79739315 None:intergenic 35.0%
!!! ATTTTGGTTTTGGTGTGAAG+AGG - chr4.4:79738670-79738689 None:intergenic 35.0%
AAATCAGAAGTGGTGTACAC+TGG + chr4.4:79740289-79740308 MS.gene50434:CDS 40.0%
AACAACTCTAGCAGGGTTAA+AGG + chr4.4:79739027-79739046 MS.gene50434:CDS 40.0%
AATCAGAAGTGGTGTACACT+GGG + chr4.4:79740290-79740309 MS.gene50434:CDS 40.0%
ACTTTGTATCCACTCAGTTC+TGG + chr4.4:79738811-79738830 MS.gene50434:CDS 40.0%
AGACTCTTAATCCAATCCAC+AGG + chr4.4:79739532-79739551 MS.gene50434:CDS 40.0%
ATGAGTTGTGGCTCGTTAAA+AGG - chr4.4:79740146-79740165 None:intergenic 40.0%
ATGATCAAATGCAGTCGCAT+CGG - chr4.4:79738283-79738302 None:intergenic 40.0%
CAATCGTTCTGGTAAGCTAA+TGG + chr4.4:79738060-79738079 MS.gene50434:intron 40.0%
CATACAAGCTGGAAAACAAG+TGG + chr4.4:79739903-79739922 MS.gene50434:CDS 40.0%
GACTACATGGAAGAAATGCT+TGG + chr4.4:79738950-79738969 MS.gene50434:intron 40.0%
GCTATAGCACTATTGCTTAG+AGG - chr4.4:79740003-79740022 None:intergenic 40.0%
TACATTGATCGCAGACTACA+TGG + chr4.4:79738937-79738956 MS.gene50434:intron 40.0%
TCAAGGTGCAGATTATGCAT+TGG + chr4.4:79740213-79740232 MS.gene50434:CDS 40.0%
TGAGGCAATACCTGATCTAT+GGG + chr4.4:79740255-79740274 MS.gene50434:CDS 40.0%
TTACAAGTTTCCTATAGGGC+AGG - chr4.4:79739346-79739365 None:intergenic 40.0%
TTACAGTTCTATGTGGGTCA+AGG - chr4.4:79739767-79739786 None:intergenic 40.0%
TTACTGTTGTCTCTACAGCA+AGG - chr4.4:79740318-79740337 None:intergenic 40.0%
TTGACTATGACGAACTTCAC+AGG + chr4.4:79739165-79739184 MS.gene50434:CDS 40.0%
TTGCAGCATAGTCACAATCT+TGG - chr4.4:79738238-79738257 None:intergenic 40.0%
! ATAAGGGCATAGAAGAAGAG+AGG - chr4.4:79738033-79738052 None:intergenic 40.0%
! ATTTTCCTTAGAACTGGGTC+TGG - chr4.4:79739314-79739333 None:intergenic 40.0%
! CATTAGCTTACCAGAACGAT+TGG - chr4.4:79738062-79738081 None:intergenic 40.0%
! GGCTGACTTAAAATCAGAAG+TGG + chr4.4:79740279-79740298 MS.gene50434:CDS 40.0%
! GTTTTCCAGCTTGTATGTTG+CGG - chr4.4:79739900-79739919 None:intergenic 40.0%
!! GTTAAAAGGCATCTAGTTGC+TGG - chr4.4:79740132-79740151 None:intergenic 40.0%
!!! CTCCTTGCAGTTTTGTTCAT+GGG + chr4.4:79739264-79739283 MS.gene50434:intron 40.0%
!!! TCTCCTTGCAGTTTTGTTCA+TGG + chr4.4:79739263-79739282 MS.gene50434:intron 40.0%
AAGCATCCATAACCTTCCTG+AGG + chr4.4:79740237-79740256 MS.gene50434:CDS 45.0%
AGTTCTATGTGGGTCAAGGT+TGG - chr4.4:79739763-79739782 None:intergenic 45.0%
CTCCCATGAACAAAACTGCA+AGG - chr4.4:79739269-79739288 None:intergenic 45.0%
CTCTTTGTGATGTGCCAATC+TGG - chr4.4:79740192-79740211 None:intergenic 45.0%
CTGAGGCAATACCTGATCTA+TGG + chr4.4:79740254-79740273 MS.gene50434:CDS 45.0%
GGCACATCACAAAGAGTTCA+AGG + chr4.4:79740196-79740215 MS.gene50434:CDS 45.0%
GTATTGCCTCAGGAAGGTTA+TGG - chr4.4:79740246-79740265 None:intergenic 45.0%
GTCTTTGGTAGGATTCCACT+GGG - chr4.4:79739687-79739706 None:intergenic 45.0%
GTTGATTGCACCATCCAGAT+TGG + chr4.4:79740175-79740194 MS.gene50434:intron 45.0%
TGAAACCAGACCCAGTTCTA+AGG + chr4.4:79739306-79739325 MS.gene50434:CDS 45.0%
TGATCAAATGCAGTCGCATC+GGG - chr4.4:79738282-79738301 None:intergenic 45.0%
TGTCTTTGGTAGGATTCCAC+TGG - chr4.4:79739688-79739707 None:intergenic 45.0%
TTGTGATGTGCCAATCTGGA+TGG - chr4.4:79740188-79740207 None:intergenic 45.0%
TTTGCAAGACCAGAACTGAG+TGG - chr4.4:79738823-79738842 None:intergenic 45.0%
! ACACTGTGCTGGTAAGTCAT+TGG + chr4.4:79739932-79739951 MS.gene50434:intron 45.0%
! CATAGATCAGGTATTGCCTC+AGG - chr4.4:79740256-79740275 None:intergenic 45.0%
AAGTCAGCCTCCCATAGATC+AGG - chr4.4:79740268-79740287 None:intergenic 50.0%
AGTGTCCGCAACATACAAGC+TGG + chr4.4:79739892-79739911 MS.gene50434:CDS 50.0%
GAGACAATGCTCCTGTGGAT+TGG - chr4.4:79739546-79739565 None:intergenic 50.0%
GGCAATACCTGATCTATGGG+AGG + chr4.4:79740258-79740277 MS.gene50434:CDS 50.0%
GGTAGGATTCCACTGGGATT+GGG - chr4.4:79739681-79739700 None:intergenic 50.0%
GTGACTATGCTGCAATGTCG+AGG + chr4.4:79738243-79738262 MS.gene50434:intron 50.0%
TGGTAGGATTCCACTGGGAT+TGG - chr4.4:79739682-79739701 None:intergenic 50.0%
! CATCTGAGACAATGCTCCTG+TGG - chr4.4:79739551-79739570 None:intergenic 50.0%
! GATCAGGTATTGCCTCAGGA+AGG - chr4.4:79740252-79740271 None:intergenic 50.0%
! TGTTGATGAGCCTGCCCTAT+AGG + chr4.4:79739333-79739352 MS.gene50434:CDS 50.0%
!! TGGGATTGGGTTGAGCAAGA+TGG - chr4.4:79739668-79739687 None:intergenic 50.0%
CTTGCTCAACCCAATCCCAG+TGG + chr4.4:79739669-79739688 MS.gene50434:CDS 55.0%
AGTGGGACTCGACACTGTGC+TGG + chr4.4:79739921-79739940 MS.gene50434:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 79738013 79740345 79738013 ID=MS.gene50434
chr4.4 mRNA 79738013 79740345 79738013 ID=MS.gene50434.t1;Parent=MS.gene50434
chr4.4 exon 79738013 79738070 79738013 ID=MS.gene50434.t1.exon1;Parent=MS.gene50434.t1
chr4.4 CDS 79738013 79738070 79738013 ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1
chr4.4 exon 79738639 79738707 79738639 ID=MS.gene50434.t1.exon2;Parent=MS.gene50434.t1
chr4.4 CDS 79738639 79738707 79738639 ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1
chr4.4 exon 79738800 79738865 79738800 ID=MS.gene50434.t1.exon3;Parent=MS.gene50434.t1
chr4.4 CDS 79738800 79738865 79738800 ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1
chr4.4 exon 79738951 79739048 79738951 ID=MS.gene50434.t1.exon4;Parent=MS.gene50434.t1
chr4.4 CDS 79738951 79739048 79738951 ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1
chr4.4 exon 79739149 79739186 79739149 ID=MS.gene50434.t1.exon5;Parent=MS.gene50434.t1
chr4.4 CDS 79739149 79739186 79739149 ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1
chr4.4 exon 79739274 79739361 79739274 ID=MS.gene50434.t1.exon6;Parent=MS.gene50434.t1
chr4.4 CDS 79739274 79739361 79739274 ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1
chr4.4 exon 79739444 79739782 79739444 ID=MS.gene50434.t1.exon7;Parent=MS.gene50434.t1
chr4.4 CDS 79739444 79739782 79739444 ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1
chr4.4 exon 79739877 79739942 79739877 ID=MS.gene50434.t1.exon8;Parent=MS.gene50434.t1
chr4.4 CDS 79739877 79739942 79739877 ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1
chr4.4 exon 79740193 79740345 79740193 ID=MS.gene50434.t1.exon9;Parent=MS.gene50434.t1
chr4.4 CDS 79740193 79740345 79740193 ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1
Gene Sequence

>MS.gene50434

ATGCAAACATCATCTTTCCTCTCTTCTTCTATGCCCTTATCAATCACCAATCGTTCTGGTAAGCTAATGGCTTGAGCTATATATTTTCCCATGCATATATAGCATTTTTTATATTTTACTTTCCATTGTAATTATCATTTGATTTTCAATCATCATTGGCTTCATGATCATTGACTTCATTTTAAAAAATAAGCCAATTATCATGAACTTTTAAAAAATGATCCAAGATTGTGACTATGCTGCAATGTCGAGGTTTTTTATATTTACCCGATGCGACTGCATTTGATCATAATTTTATGTGATATTAAAAGTCACGACGCAACGGTGACCTAAAATCTTGACCATGACTAGGTTTTAATTTGCTTAGAATGCAAAAATTTAGCAATGATCATACAACAAACATAACAAAAGCGTTATTACAAAAAAATAATTACAAAAATATAAAGCGTAGTACAAATGTTTGGAATAAAAAACCATAACATAACTTTTGTTGCAGAGCCATGAAAAAACGTTGAGAATAAAAATGAATTCACTTTGTTAGTAAACTTTTTTTTTGAACAAATCAAAAGCTTTGTTACTAAAATTAATTTTCAGTTTTTAACTTTGTTGTTTATTCTATGTAAAAGGTTCTCTTAGCGAAATGGAATACGTGAACCTCTTCACACCAAAACCAAAATATGATTGCCTTCTTTTTGGTAAGTATTTCAAATGATAACATTTTTAAGTACCAAATAGAAATTTTCATTTTCATGTTTGTTACATGTATAACCATGATATTGTTCTGCAGATTTAGATGATACTTTGTATCCACTCAGTTCTGGTCTTGCAAATGCATGTCGACAAAATTTTAAAGGTAAGCAATTCTGCATAATAATTGACTTGTATTAGTAATGTGTTTCACACTTTTAGTATTAACATGAATGTTACATTGATCGCAGACTACATGGAAGAAATGCTTGGCATAGATCCAAGAAAATCTGATGATTTATGCACCCTTCTTTACAAGAATTATGGAACAACTCTAGCAGGGTTAAAGGTATGATTTCCTACTGTCCATATATTTTTCTGTGAAATGGCATTTCCGTTTTAAAATTTTGAATATACTATAACCTGTTTATTGTTTCATTTCTATTCAGGCAATTGGATATGACTTTGACTATGACGAACTTCACAGGTATATCTTAATTTATCATCTCTCTCTTTTAATCCATGTATATGTATTTTTAAGTGATTAAAATGATCATTGAATTTCTCCTTGCAGTTTTGTTCATGGGAGACTACCTTATGAGAACTTGAAACCAGACCCAGTTCTAAGGAAAATGTTGATGAGCCTGCCCTATAGGAAACTTGTAAGTTGTTTATAACCAAAATGGAATCAATAGAATAAGGTCAGAAAACCACTACTAATGCTTCACTTGTTTTTGTCAATAGATCTTCACAAATGCGGACAAAGTTCATGCTCTTAAGACACTAAACATACTTGGATTAGAAGATTGCTTTGAAGGAATTATTTGCTTTGAGACTCTTAATCCAATCCACAGGAGCATTGTCTCAGATGATGAAGATGACATTGAGTTTCTAGGTTTAACAAGAACTACTAAGCAAACAAGTAGTAATAGTGCAAACAGCTCTCAAATATTTGACATTATAAACCATCTTGCTCAACCCAATCCCAGTGGAATCCTACCAAAGACATCAATTGTTTGCAAGCCATCAGAAAATGCCATTCAATTGGCTCTCAAAATAGCCAACCTTGACCCACATAGAACTGTAAGAAAATCACCCTTTATGATCTATCTTTGTTTCTTTCGTTTTTTTTTTTATTTGCTTGCTTAGTTCTTCATTGGTTCTGTGTCATTTTCAGTTGTTCTTTGAGGACAGTGTCCGCAACATACAAGCTGGAAAACAAGTGGGACTCGACACTGTGCTGGTAAGTCATTGGAAATTTTTTTGTAGTAGAAACTGAAGATAGCAGTTTGTTCAAATTCCTCTAAGCAATAGTGCTATAGCGCCGCTATTTGACAACATTTTGTATTGTATAGCATATCACGAAACAATATCAATATGTTCAGATTCCGCTACGTAATAGCTCTATAACCTCTGTTTAAATAAACTGCCAGCAACTAGATGCCTTTTAACGAGCCACAACTCATAAATTACTTGTTGATTGCACCATCCAGATTGGCACATCACAAAGAGTTCAAGGTGCAGATTATGCATTGGAAAGCATCCATAACCTTCCTGAGGCAATACCTGATCTATGGGAGGCTGACTTAAAATCAGAAGTGGTGTACACTGGGAACCTTGCTGTAGAGACAACAGTAACTGCTTAA

Protein sequence

>MS.gene50434.t1

MQTSSFLSSSMPLSITNRSGSLSEMEYVNLFTPKPKYDCLLFDLDDTLYPLSSGLANACRQNFKDYMEEMLGIDPRKSDDLCTLLYKNYGTTLAGLKAIGYDFDYDELHSFVHGRLPYENLKPDPVLRKMLMSLPYRKLIFTNADKVHALKTLNILGLEDCFEGIICFETLNPIHRSIVSDDEDDIEFLGLTRTTKQTSSNSANSSQIFDIINHLAQPNPSGILPKTSIVCKPSENAIQLALKIANLDPHRTLFFEDSVRNIQAGKQVGLDTVLIGTSQRVQGADYALESIHNLPEAIPDLWEADLKSEVVYTGNLAVETTVTA