Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50434.t1 | KEH29067.1 | 90.7 | 324 | 30 | 0 | 1 | 324 | 1 | 324 | 6.20E-165 | 590.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50434.t1 | P40025 | 29.7 | 175 | 114 | 3 | 14 | 179 | 28 | 202 | 3.5e-15 | 84.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50434.t1 | A0A072UHB0 | 90.7 | 324 | 30 | 0 | 1 | 324 | 1 | 324 | 4.5e-165 | 590.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80067 | MS.gene50434 | PPI |
| MS.gene006477 | MS.gene50434 | PPI |
| MS.gene26907 | MS.gene50434 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50434.t1 | MTR_4g021825 | 94.136 | 324 | 19 | 0 | 1 | 324 | 1 | 324 | 0.0 | 612 |
| MS.gene50434.t1 | MTR_7g062150 | 74.172 | 302 | 75 | 2 | 25 | 324 | 1 | 301 | 2.35e-166 | 465 |
| MS.gene50434.t1 | MTR_4g021800 | 75.685 | 292 | 62 | 3 | 34 | 324 | 13 | 296 | 2.53e-159 | 447 |
| MS.gene50434.t1 | MTR_4g021800 | 76.062 | 259 | 53 | 3 | 67 | 324 | 1 | 251 | 1.02e-139 | 395 |
| MS.gene50434.t1 | MTR_7g062150 | 72.727 | 231 | 60 | 2 | 25 | 253 | 1 | 230 | 1.08e-120 | 347 |
| MS.gene50434.t1 | MTR_4g021800 | 74.208 | 221 | 51 | 2 | 34 | 253 | 13 | 228 | 5.92e-115 | 332 |
| MS.gene50434.t1 | MTR_2g097520 | 54.795 | 292 | 120 | 2 | 34 | 324 | 11 | 291 | 1.52e-112 | 328 |
| MS.gene50434.t1 | MTR_4g064380 | 53.793 | 290 | 113 | 3 | 35 | 324 | 13 | 281 | 8.15e-108 | 316 |
| MS.gene50434.t1 | MTR_1g085570 | 49.135 | 289 | 98 | 2 | 36 | 324 | 18 | 257 | 7.95e-95 | 282 |
| MS.gene50434.t1 | MTR_1g085570 | 49.135 | 289 | 98 | 2 | 36 | 324 | 10 | 249 | 1.12e-94 | 281 |
| MS.gene50434.t1 | MTR_1g085570 | 48.966 | 290 | 98 | 3 | 36 | 324 | 10 | 250 | 7.05e-93 | 276 |
| MS.gene50434.t1 | MTR_1g085570 | 49.167 | 240 | 73 | 2 | 36 | 275 | 10 | 200 | 3.32e-77 | 236 |
| MS.gene50434.t1 | MTR_1g104610 | 42.182 | 275 | 113 | 5 | 31 | 302 | 3 | 234 | 4.51e-70 | 219 |
| MS.gene50434.t1 | MTR_1g104610 | 43.496 | 246 | 95 | 4 | 31 | 275 | 3 | 205 | 4.69e-63 | 200 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50434.t1 | AT5G02230 | 60.248 | 322 | 102 | 3 | 6 | 324 | 19 | 317 | 6.99e-128 | 368 |
| MS.gene50434.t1 | AT5G02230 | 62.376 | 303 | 88 | 3 | 25 | 324 | 1 | 280 | 1.26e-126 | 363 |
| MS.gene50434.t1 | AT5G02230 | 62.376 | 303 | 88 | 3 | 25 | 324 | 1 | 280 | 1.26e-126 | 363 |
| MS.gene50434.t1 | AT5G59480 | 55.000 | 300 | 111 | 3 | 25 | 320 | 1 | 280 | 2.13e-115 | 335 |
| MS.gene50434.t1 | AT5G59480 | 55.000 | 300 | 111 | 3 | 25 | 320 | 1 | 280 | 2.13e-115 | 335 |
| MS.gene50434.t1 | AT5G59480 | 55.000 | 300 | 111 | 3 | 25 | 320 | 1 | 280 | 2.13e-115 | 335 |
| MS.gene50434.t1 | AT5G59480 | 55.000 | 300 | 111 | 3 | 25 | 320 | 1 | 280 | 2.13e-115 | 335 |
| MS.gene50434.t1 | AT5G59480 | 55.000 | 300 | 110 | 4 | 25 | 320 | 1 | 279 | 2.28e-113 | 330 |
| MS.gene50434.t1 | AT5G59490 | 51.148 | 305 | 105 | 5 | 25 | 324 | 1 | 266 | 3.30e-96 | 286 |
| MS.gene50434.t1 | AT3G62040 | 49.808 | 261 | 79 | 5 | 67 | 324 | 1 | 212 | 2.03e-78 | 238 |
| MS.gene50434.t1 | AT5G59490 | 53.386 | 251 | 78 | 4 | 25 | 275 | 1 | 212 | 1.20e-77 | 236 |
| MS.gene50434.t1 | AT2G32150 | 40.809 | 272 | 116 | 3 | 31 | 302 | 3 | 229 | 1.18e-73 | 228 |
| MS.gene50434.t1 | AT2G32150 | 42.017 | 238 | 96 | 2 | 38 | 275 | 7 | 202 | 9.94e-62 | 196 |
| MS.gene50434.t1 | AT2G32150 | 40.826 | 218 | 87 | 2 | 38 | 255 | 7 | 182 | 7.74e-53 | 172 |
Find 63 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGAAGGCAATCATATTT+TGG | 0.184331 | 4.4:-79738683 | None:intergenic |
| ACCCTTCTTTACAAGAATTA+TGG | 0.236813 | 4.4:+79739004 | MS.gene50434:CDS |
| GAAGATGACATTGAGTTTCT+AGG | 0.281835 | 4.4:+79739573 | MS.gene50434:CDS |
| AACAACTCTAGCAGGGTTAA+AGG | 0.290235 | 4.4:+79739027 | MS.gene50434:CDS |
| CTGAGGCAATACCTGATCTA+TGG | 0.301808 | 4.4:+79740254 | MS.gene50434:CDS |
| TTCATTTCTATTCAGGCAAT+TGG | 0.316082 | 4.4:+79739134 | MS.gene50434:intron |
| ACAACTTACAAGTTTCCTAT+AGG | 0.317796 | 4.4:-79739348 | None:intergenic |
| ACTTTGTATCCACTCAGTTC+TGG | 0.328194 | 4.4:+79738811 | MS.gene50434:CDS |
| TGGTAGGATTCCACTGGGAT+TGG | 0.351011 | 4.4:-79739679 | None:intergenic |
| GGTAGGATTCCACTGGGATT+GGG | 0.365764 | 4.4:-79739678 | None:intergenic |
| CAACTTACAAGTTTCCTATA+GGG | 0.370712 | 4.4:-79739347 | None:intergenic |
| GGATTAGAAGATTGCTTTGA+AGG | 0.372172 | 4.4:+79739495 | MS.gene50434:CDS |
| TTGCAAACAATTGATGTCTT+TGG | 0.375139 | 4.4:-79739699 | None:intergenic |
| TGAAACCAGACCCAGTTCTA+AGG | 0.386637 | 4.4:+79739306 | MS.gene50434:CDS |
| TGTTGATGAGCCTGCCCTAT+AGG | 0.387214 | 4.4:+79739333 | MS.gene50434:CDS |
| CTTAAGACACTAAACATACT+TGG | 0.390861 | 4.4:+79739474 | MS.gene50434:CDS |
| TTCCATAATTCTTGTAAAGA+AGG | 0.391744 | 4.4:-79739006 | None:intergenic |
| AAAAGGTTCTCTTAGCGAAA+TGG | 0.408686 | 4.4:+79738634 | MS.gene50434:intron |
| TGTCTTTGGTAGGATTCCAC+TGG | 0.425417 | 4.4:-79739685 | None:intergenic |
| TTATCAATCACCAATCGTTC+TGG | 0.428300 | 4.4:+79738049 | MS.gene50434:CDS |
| ATCAGAAAATGCCATTCAAT+TGG | 0.440833 | 4.4:+79739725 | MS.gene50434:CDS |
| TCTGGTTTCAAGTTCTCATA+AGG | 0.442699 | 4.4:-79739293 | None:intergenic |
| GAGACAACAGTAACTGCTTA+AGG | 0.446956 | 4.4:+79740325 | MS.gene50434:CDS |
| AGAACGATTGGTGATTGATA+AGG | 0.459665 | 4.4:-79738047 | None:intergenic |
| AATTATGGAACAACTCTAGC+AGG | 0.465228 | 4.4:+79739019 | MS.gene50434:CDS |
| GTATTGCCTCAGGAAGGTTA+TGG | 0.470844 | 4.4:-79740243 | None:intergenic |
| GAGACAATGCTCCTGTGGAT+TGG | 0.472943 | 4.4:-79739543 | None:intergenic |
| GAACGATTGGTGATTGATAA+GGG | 0.476873 | 4.4:-79738046 | None:intergenic |
| AAGTCAGCCTCCCATAGATC+AGG | 0.477248 | 4.4:-79740265 | None:intergenic |
| TTACAGTTCTATGTGGGTCA+AGG | 0.487086 | 4.4:-79739764 | None:intergenic |
| TCCATAATTCTTGTAAAGAA+GGG | 0.493278 | 4.4:-79739005 | None:intergenic |
| GGCACATCACAAAGAGTTCA+AGG | 0.501955 | 4.4:+79740196 | MS.gene50434:CDS |
| TACATTGATCGCAGACTACA+TGG | 0.502304 | 4.4:+79738937 | MS.gene50434:intron |
| AAATCAGAAGTGGTGTACAC+TGG | 0.506025 | 4.4:+79740289 | MS.gene50434:CDS |
| CATAGATCAGGTATTGCCTC+AGG | 0.510990 | 4.4:-79740253 | None:intergenic |
| TTACAAGTTTCCTATAGGGC+AGG | 0.519783 | 4.4:-79739343 | None:intergenic |
| TTGACTATGACGAACTTCAC+AGG | 0.521165 | 4.4:+79739165 | MS.gene50434:CDS |
| TGGGATTGGGTTGAGCAAGA+TGG | 0.525761 | 4.4:-79739665 | None:intergenic |
| CATTAGCTTACCAGAACGAT+TGG | 0.533956 | 4.4:-79738059 | None:intergenic |
| AGTTCTATGTGGGTCAAGGT+TGG | 0.539209 | 4.4:-79739760 | None:intergenic |
| GTCTTTGGTAGGATTCCACT+GGG | 0.543749 | 4.4:-79739684 | None:intergenic |
| TCAAGGTGCAGATTATGCAT+TGG | 0.546977 | 4.4:+79740213 | MS.gene50434:CDS |
| ATAAGGGCATAGAAGAAGAG+AGG | 0.554219 | 4.4:-79738030 | None:intergenic |
| AGTGGGACTCGACACTGTGC+TGG | 0.555191 | 4.4:+79739921 | MS.gene50434:CDS |
| AAACAATTGATGTCTTTGGT+AGG | 0.556880 | 4.4:-79739695 | None:intergenic |
| GAGGAAAGATGATGTTTGCA+TGG | 0.563909 | 4.4:-79738011 | None:intergenic |
| GACTACATGGAAGAAATGCT+TGG | 0.567750 | 4.4:+79738950 | MS.gene50434:intron |
| AATCAGAAGTGGTGTACACT+GGG | 0.567947 | 4.4:+79740290 | MS.gene50434:CDS |
| TGAGGCAATACCTGATCTAT+GGG | 0.570617 | 4.4:+79740255 | MS.gene50434:CDS |
| AGACTCTTAATCCAATCCAC+AGG | 0.582574 | 4.4:+79739532 | MS.gene50434:CDS |
| CATCTGAGACAATGCTCCTG+TGG | 0.586854 | 4.4:-79739548 | None:intergenic |
| AGTGTCCGCAACATACAAGC+TGG | 0.586963 | 4.4:+79739892 | MS.gene50434:CDS |
| GGCTGACTTAAAATCAGAAG+TGG | 0.614175 | 4.4:+79740279 | MS.gene50434:CDS |
| CATACAAGCTGGAAAACAAG+TGG | 0.628481 | 4.4:+79739903 | MS.gene50434:CDS |
| TCAATAGATCTTCACAAATG+CGG | 0.630764 | 4.4:+79739437 | MS.gene50434:intron |
| GATCAGGTATTGCCTCAGGA+AGG | 0.643927 | 4.4:-79740249 | None:intergenic |
| ATTATGGAACAACTCTAGCA+GGG | 0.644459 | 4.4:+79739020 | MS.gene50434:CDS |
| GGCAATACCTGATCTATGGG+AGG | 0.662711 | 4.4:+79740258 | MS.gene50434:CDS |
| ATACAAGCTGGAAAACAAGT+GGG | 0.683793 | 4.4:+79739904 | MS.gene50434:CDS |
| TTACTGTTGTCTCTACAGCA+AGG | 0.685440 | 4.4:-79740315 | None:intergenic |
| TTTGCAAGACCAGAACTGAG+TGG | 0.697387 | 4.4:-79738820 | None:intergenic |
| AAGCATCCATAACCTTCCTG+AGG | 0.706931 | 4.4:+79740237 | MS.gene50434:CDS |
| CTTGCTCAACCCAATCCCAG+TGG | 0.708054 | 4.4:+79739669 | MS.gene50434:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATATTCAAAATTTTAAAA+CGG | - | chr4.4:79739097-79739116 | None:intergenic | 10.0% |
| !! | AAATCAAATGATAATTACAA+TGG | - | chr4.4:79738138-79738157 | None:intergenic | 15.0% |
| !! | TGAAAATGAAAATTTCTATT+TGG | - | chr4.4:79738743-79738762 | None:intergenic | 15.0% |
| !!! | TTTTAAAAGTTCATGATAAT+TGG | - | chr4.4:79738209-79738228 | None:intergenic | 15.0% |
| !! | AAAAAATGCTATATATGCAT+GGG | - | chr4.4:79738103-79738122 | None:intergenic | 20.0% |
| !! | AAAATGGAATCAATAGAATA+AGG | + | chr4.4:79739379-79739398 | MS.gene50434:intron | 20.0% |
| !! | AAACAAAGATAGATCATAAA+GGG | - | chr4.4:79739798-79739817 | None:intergenic | 20.0% |
| !! | ATAGAAATGAAACAATAAAC+AGG | - | chr4.4:79739125-79739144 | None:intergenic | 20.0% |
| !! | CACTTAAAAATACATATACA+TGG | - | chr4.4:79739223-79739242 | None:intergenic | 20.0% |
| !! | TAAAAAATGCTATATATGCA+TGG | - | chr4.4:79738104-79738123 | None:intergenic | 20.0% |
| !! | TAAGTTGTTTATAACCAAAA+TGG | + | chr4.4:79739363-79739382 | MS.gene50434:intron | 20.0% |
| !! | TTATTGTTTCATTTCTATTC+AGG | + | chr4.4:79739127-79739146 | MS.gene50434:intron | 20.0% |
| !!! | ATTTGATTTTCAATCATCAT+TGG | + | chr4.4:79738149-79738168 | MS.gene50434:intron | 20.0% |
| !!! | TGTTGTTTATTCTATGTAAA+AGG | + | chr4.4:79738617-79738636 | MS.gene50434:intron | 20.0% |
| !!! | TTATTCTATTGATTCCATTT+TGG | - | chr4.4:79739380-79739399 | None:intergenic | 20.0% |
| ! | AACAAGTAATTTATGAGTTG+TGG | - | chr4.4:79740158-79740177 | None:intergenic | 25.0% |
| ! | CCATTTCACAGAAAAATATA+TGG | - | chr4.4:79739069-79739088 | None:intergenic | 25.0% |
| ! | GAAACAAAGATAGATCATAA+AGG | - | chr4.4:79739799-79739818 | None:intergenic | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+CGG | - | chr4.4:79740027-79740046 | None:intergenic | 25.0% |
| ! | TCCATAATTCTTGTAAAGAA+GGG | - | chr4.4:79739008-79739027 | None:intergenic | 25.0% |
| ! | TGAAATACTTACCAAAAAGA+AGG | - | chr4.4:79738700-79738719 | None:intergenic | 25.0% |
| ! | TTCCATAATTCTTGTAAAGA+AGG | - | chr4.4:79739009-79739028 | None:intergenic | 25.0% |
| !! | AAAAGAAGGCAATCATATTT+TGG | - | chr4.4:79738686-79738705 | None:intergenic | 25.0% |
| !! | AAATATGATTGCCTTCTTTT+TGG | + | chr4.4:79738686-79738705 | MS.gene50434:CDS | 25.0% |
| !! | ATTTTCTTACAGTTCTATGT+GGG | - | chr4.4:79739773-79739792 | None:intergenic | 25.0% |
| !! | CATAAATCATCAGATTTTCT+TGG | - | chr4.4:79738983-79739002 | None:intergenic | 25.0% |
| !! | CCATATATTTTTCTGTGAAA+TGG | + | chr4.4:79739066-79739085 | MS.gene50434:intron | 25.0% |
| !!! | TTATTCTCAACGTTTTTTCA+TGG | - | chr4.4:79738514-79738533 | None:intergenic | 25.0% |
| AAACAATTGATGTCTTTGGT+AGG | - | chr4.4:79739698-79739717 | None:intergenic | 30.0% | |
| AAATCTGCAGAACAATATCA+TGG | - | chr4.4:79738784-79738803 | None:intergenic | 30.0% | |
| ACAACTTACAAGTTTCCTAT+AGG | - | chr4.4:79739351-79739370 | None:intergenic | 30.0% | |
| ACCCTTCTTTACAAGAATTA+TGG | + | chr4.4:79739004-79739023 | MS.gene50434:CDS | 30.0% | |
| AGCAAATTAAAACCTAGTCA+TGG | - | chr4.4:79738357-79738376 | None:intergenic | 30.0% | |
| ATCAGAAAATGCCATTCAAT+TGG | + | chr4.4:79739725-79739744 | MS.gene50434:CDS | 30.0% | |
| CAACTTACAAGTTTCCTATA+GGG | - | chr4.4:79739350-79739369 | None:intergenic | 30.0% | |
| CAGAAAAATATATGGACAGT+AGG | - | chr4.4:79739061-79739080 | None:intergenic | 30.0% | |
| CTGCAACAAAAGTTATGTTA+TGG | - | chr4.4:79738489-79738508 | None:intergenic | 30.0% | |
| CTTAAGACACTAAACATACT+TGG | + | chr4.4:79739474-79739493 | MS.gene50434:CDS | 30.0% | |
| TAAAGCGTAGTACAAATGTT+TGG | + | chr4.4:79738454-79738473 | MS.gene50434:intron | 30.0% | |
| TCAATAGATCTTCACAAATG+CGG | + | chr4.4:79739437-79739456 | MS.gene50434:intron | 30.0% | |
| TTCATTTCTATTCAGGCAAT+TGG | + | chr4.4:79739134-79739153 | MS.gene50434:intron | 30.0% | |
| TTGCAAACAATTGATGTCTT+TGG | - | chr4.4:79739702-79739721 | None:intergenic | 30.0% | |
| ! | AATTGAATGGCATTTTCTGA+TGG | - | chr4.4:79739726-79739745 | None:intergenic | 30.0% |
| ! | ATCAACATTTTCCTTAGAAC+TGG | - | chr4.4:79739320-79739339 | None:intergenic | 30.0% |
| ! | GATTTTCTTACAGTTCTATG+TGG | - | chr4.4:79739774-79739793 | None:intergenic | 30.0% |
| ! | GCATGTCGACAAAATTTTAA+AGG | + | chr4.4:79738844-79738863 | MS.gene50434:CDS | 30.0% |
| ! | TCAACATTTTCCTTAGAACT+GGG | - | chr4.4:79739319-79739338 | None:intergenic | 30.0% |
| ! | TCATTTTCAGTTGTTCTTTG+AGG | + | chr4.4:79739867-79739886 | MS.gene50434:intron | 30.0% |
| !! | TATTTTGAGAGCCAATTGAA+TGG | - | chr4.4:79739739-79739758 | None:intergenic | 30.0% |
| !!! | AGGCAATCATATTTTGGTTT+TGG | - | chr4.4:79738680-79738699 | None:intergenic | 30.0% |
| AAAAGGTTCTCTTAGCGAAA+TGG | + | chr4.4:79738634-79738653 | MS.gene50434:intron | 35.0% | |
| AATTATGGAACAACTCTAGC+AGG | + | chr4.4:79739019-79739038 | MS.gene50434:CDS | 35.0% | |
| ATACAAGCTGGAAAACAAGT+GGG | + | chr4.4:79739904-79739923 | MS.gene50434:CDS | 35.0% | |
| ATTATGGAACAACTCTAGCA+GGG | + | chr4.4:79739020-79739039 | MS.gene50434:CDS | 35.0% | |
| CTAAAATCTTGACCATGACT+AGG | + | chr4.4:79738342-79738361 | MS.gene50434:intron | 35.0% | |
| CTGGCAGTTTATTTAAACAG+AGG | - | chr4.4:79740113-79740132 | None:intergenic | 35.0% | |
| GAAGATGACATTGAGTTTCT+AGG | + | chr4.4:79739573-79739592 | MS.gene50434:CDS | 35.0% | |
| GGATTAGAAGATTGCTTTGA+AGG | + | chr4.4:79739495-79739514 | MS.gene50434:CDS | 35.0% | |
| GTTATAGAGCTATTACGTAG+CGG | - | chr4.4:79740091-79740110 | None:intergenic | 35.0% | |
| TATTAAAAGTCACGACGCAA+CGG | + | chr4.4:79738315-79738334 | MS.gene50434:intron | 35.0% | |
| TTATCAATCACCAATCGTTC+TGG | + | chr4.4:79738049-79738068 | MS.gene50434:CDS | 35.0% | |
| ! | AACAAGTGAAGCATTAGTAG+TGG | - | chr4.4:79739413-79739432 | None:intergenic | 35.0% |
| ! | AGAACGATTGGTGATTGATA+AGG | - | chr4.4:79738050-79738069 | None:intergenic | 35.0% |
| ! | CTAGTCATGGTCAAGATTTT+AGG | - | chr4.4:79738344-79738363 | None:intergenic | 35.0% |
| ! | GAACGATTGGTGATTGATAA+GGG | - | chr4.4:79738049-79738068 | None:intergenic | 35.0% |
| ! | TTGCTTGCTTAGTTCTTCAT+TGG | + | chr4.4:79739837-79739856 | MS.gene50434:intron | 35.0% |
| !! | TCTGGTTTCAAGTTCTCATA+AGG | - | chr4.4:79739296-79739315 | None:intergenic | 35.0% |
| !!! | ATTTTGGTTTTGGTGTGAAG+AGG | - | chr4.4:79738670-79738689 | None:intergenic | 35.0% |
| AAATCAGAAGTGGTGTACAC+TGG | + | chr4.4:79740289-79740308 | MS.gene50434:CDS | 40.0% | |
| AACAACTCTAGCAGGGTTAA+AGG | + | chr4.4:79739027-79739046 | MS.gene50434:CDS | 40.0% | |
| AATCAGAAGTGGTGTACACT+GGG | + | chr4.4:79740290-79740309 | MS.gene50434:CDS | 40.0% | |
| ACTTTGTATCCACTCAGTTC+TGG | + | chr4.4:79738811-79738830 | MS.gene50434:CDS | 40.0% | |
| AGACTCTTAATCCAATCCAC+AGG | + | chr4.4:79739532-79739551 | MS.gene50434:CDS | 40.0% | |
| ATGAGTTGTGGCTCGTTAAA+AGG | - | chr4.4:79740146-79740165 | None:intergenic | 40.0% | |
| ATGATCAAATGCAGTCGCAT+CGG | - | chr4.4:79738283-79738302 | None:intergenic | 40.0% | |
| CAATCGTTCTGGTAAGCTAA+TGG | + | chr4.4:79738060-79738079 | MS.gene50434:intron | 40.0% | |
| CATACAAGCTGGAAAACAAG+TGG | + | chr4.4:79739903-79739922 | MS.gene50434:CDS | 40.0% | |
| GACTACATGGAAGAAATGCT+TGG | + | chr4.4:79738950-79738969 | MS.gene50434:intron | 40.0% | |
| GCTATAGCACTATTGCTTAG+AGG | - | chr4.4:79740003-79740022 | None:intergenic | 40.0% | |
| TACATTGATCGCAGACTACA+TGG | + | chr4.4:79738937-79738956 | MS.gene50434:intron | 40.0% | |
| TCAAGGTGCAGATTATGCAT+TGG | + | chr4.4:79740213-79740232 | MS.gene50434:CDS | 40.0% | |
| TGAGGCAATACCTGATCTAT+GGG | + | chr4.4:79740255-79740274 | MS.gene50434:CDS | 40.0% | |
| TTACAAGTTTCCTATAGGGC+AGG | - | chr4.4:79739346-79739365 | None:intergenic | 40.0% | |
| TTACAGTTCTATGTGGGTCA+AGG | - | chr4.4:79739767-79739786 | None:intergenic | 40.0% | |
| TTACTGTTGTCTCTACAGCA+AGG | - | chr4.4:79740318-79740337 | None:intergenic | 40.0% | |
| TTGACTATGACGAACTTCAC+AGG | + | chr4.4:79739165-79739184 | MS.gene50434:CDS | 40.0% | |
| TTGCAGCATAGTCACAATCT+TGG | - | chr4.4:79738238-79738257 | None:intergenic | 40.0% | |
| ! | ATAAGGGCATAGAAGAAGAG+AGG | - | chr4.4:79738033-79738052 | None:intergenic | 40.0% |
| ! | ATTTTCCTTAGAACTGGGTC+TGG | - | chr4.4:79739314-79739333 | None:intergenic | 40.0% |
| ! | CATTAGCTTACCAGAACGAT+TGG | - | chr4.4:79738062-79738081 | None:intergenic | 40.0% |
| ! | GGCTGACTTAAAATCAGAAG+TGG | + | chr4.4:79740279-79740298 | MS.gene50434:CDS | 40.0% |
| ! | GTTTTCCAGCTTGTATGTTG+CGG | - | chr4.4:79739900-79739919 | None:intergenic | 40.0% |
| !! | GTTAAAAGGCATCTAGTTGC+TGG | - | chr4.4:79740132-79740151 | None:intergenic | 40.0% |
| !!! | CTCCTTGCAGTTTTGTTCAT+GGG | + | chr4.4:79739264-79739283 | MS.gene50434:intron | 40.0% |
| !!! | TCTCCTTGCAGTTTTGTTCA+TGG | + | chr4.4:79739263-79739282 | MS.gene50434:intron | 40.0% |
| AAGCATCCATAACCTTCCTG+AGG | + | chr4.4:79740237-79740256 | MS.gene50434:CDS | 45.0% | |
| AGTTCTATGTGGGTCAAGGT+TGG | - | chr4.4:79739763-79739782 | None:intergenic | 45.0% | |
| CTCCCATGAACAAAACTGCA+AGG | - | chr4.4:79739269-79739288 | None:intergenic | 45.0% | |
| CTCTTTGTGATGTGCCAATC+TGG | - | chr4.4:79740192-79740211 | None:intergenic | 45.0% | |
| CTGAGGCAATACCTGATCTA+TGG | + | chr4.4:79740254-79740273 | MS.gene50434:CDS | 45.0% | |
| GGCACATCACAAAGAGTTCA+AGG | + | chr4.4:79740196-79740215 | MS.gene50434:CDS | 45.0% | |
| GTATTGCCTCAGGAAGGTTA+TGG | - | chr4.4:79740246-79740265 | None:intergenic | 45.0% | |
| GTCTTTGGTAGGATTCCACT+GGG | - | chr4.4:79739687-79739706 | None:intergenic | 45.0% | |
| GTTGATTGCACCATCCAGAT+TGG | + | chr4.4:79740175-79740194 | MS.gene50434:intron | 45.0% | |
| TGAAACCAGACCCAGTTCTA+AGG | + | chr4.4:79739306-79739325 | MS.gene50434:CDS | 45.0% | |
| TGATCAAATGCAGTCGCATC+GGG | - | chr4.4:79738282-79738301 | None:intergenic | 45.0% | |
| TGTCTTTGGTAGGATTCCAC+TGG | - | chr4.4:79739688-79739707 | None:intergenic | 45.0% | |
| TTGTGATGTGCCAATCTGGA+TGG | - | chr4.4:79740188-79740207 | None:intergenic | 45.0% | |
| TTTGCAAGACCAGAACTGAG+TGG | - | chr4.4:79738823-79738842 | None:intergenic | 45.0% | |
| ! | ACACTGTGCTGGTAAGTCAT+TGG | + | chr4.4:79739932-79739951 | MS.gene50434:intron | 45.0% |
| ! | CATAGATCAGGTATTGCCTC+AGG | - | chr4.4:79740256-79740275 | None:intergenic | 45.0% |
| AAGTCAGCCTCCCATAGATC+AGG | - | chr4.4:79740268-79740287 | None:intergenic | 50.0% | |
| AGTGTCCGCAACATACAAGC+TGG | + | chr4.4:79739892-79739911 | MS.gene50434:CDS | 50.0% | |
| GAGACAATGCTCCTGTGGAT+TGG | - | chr4.4:79739546-79739565 | None:intergenic | 50.0% | |
| GGCAATACCTGATCTATGGG+AGG | + | chr4.4:79740258-79740277 | MS.gene50434:CDS | 50.0% | |
| GGTAGGATTCCACTGGGATT+GGG | - | chr4.4:79739681-79739700 | None:intergenic | 50.0% | |
| GTGACTATGCTGCAATGTCG+AGG | + | chr4.4:79738243-79738262 | MS.gene50434:intron | 50.0% | |
| TGGTAGGATTCCACTGGGAT+TGG | - | chr4.4:79739682-79739701 | None:intergenic | 50.0% | |
| ! | CATCTGAGACAATGCTCCTG+TGG | - | chr4.4:79739551-79739570 | None:intergenic | 50.0% |
| ! | GATCAGGTATTGCCTCAGGA+AGG | - | chr4.4:79740252-79740271 | None:intergenic | 50.0% |
| ! | TGTTGATGAGCCTGCCCTAT+AGG | + | chr4.4:79739333-79739352 | MS.gene50434:CDS | 50.0% |
| !! | TGGGATTGGGTTGAGCAAGA+TGG | - | chr4.4:79739668-79739687 | None:intergenic | 50.0% |
| CTTGCTCAACCCAATCCCAG+TGG | + | chr4.4:79739669-79739688 | MS.gene50434:CDS | 55.0% | |
| AGTGGGACTCGACACTGTGC+TGG | + | chr4.4:79739921-79739940 | MS.gene50434:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 79738013 | 79740345 | 79738013 | ID=MS.gene50434 |
| chr4.4 | mRNA | 79738013 | 79740345 | 79738013 | ID=MS.gene50434.t1;Parent=MS.gene50434 |
| chr4.4 | exon | 79738013 | 79738070 | 79738013 | ID=MS.gene50434.t1.exon1;Parent=MS.gene50434.t1 |
| chr4.4 | CDS | 79738013 | 79738070 | 79738013 | ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1 |
| chr4.4 | exon | 79738639 | 79738707 | 79738639 | ID=MS.gene50434.t1.exon2;Parent=MS.gene50434.t1 |
| chr4.4 | CDS | 79738639 | 79738707 | 79738639 | ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1 |
| chr4.4 | exon | 79738800 | 79738865 | 79738800 | ID=MS.gene50434.t1.exon3;Parent=MS.gene50434.t1 |
| chr4.4 | CDS | 79738800 | 79738865 | 79738800 | ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1 |
| chr4.4 | exon | 79738951 | 79739048 | 79738951 | ID=MS.gene50434.t1.exon4;Parent=MS.gene50434.t1 |
| chr4.4 | CDS | 79738951 | 79739048 | 79738951 | ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1 |
| chr4.4 | exon | 79739149 | 79739186 | 79739149 | ID=MS.gene50434.t1.exon5;Parent=MS.gene50434.t1 |
| chr4.4 | CDS | 79739149 | 79739186 | 79739149 | ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1 |
| chr4.4 | exon | 79739274 | 79739361 | 79739274 | ID=MS.gene50434.t1.exon6;Parent=MS.gene50434.t1 |
| chr4.4 | CDS | 79739274 | 79739361 | 79739274 | ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1 |
| chr4.4 | exon | 79739444 | 79739782 | 79739444 | ID=MS.gene50434.t1.exon7;Parent=MS.gene50434.t1 |
| chr4.4 | CDS | 79739444 | 79739782 | 79739444 | ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1 |
| chr4.4 | exon | 79739877 | 79739942 | 79739877 | ID=MS.gene50434.t1.exon8;Parent=MS.gene50434.t1 |
| chr4.4 | CDS | 79739877 | 79739942 | 79739877 | ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1 |
| chr4.4 | exon | 79740193 | 79740345 | 79740193 | ID=MS.gene50434.t1.exon9;Parent=MS.gene50434.t1 |
| chr4.4 | CDS | 79740193 | 79740345 | 79740193 | ID=cds.MS.gene50434.t1;Parent=MS.gene50434.t1 |
| Gene Sequence |
| Protein sequence |
