Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50611.t1 | XP_013468526.1 | 94.4 | 666 | 37 | 0 | 5 | 670 | 1 | 666 | 0.00E+00 | 1257.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50611.t1 | P0C7P8 | 40.3 | 750 | 343 | 16 | 5 | 667 | 1 | 732 | 2.2e-120 | 434.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50611.t1 | A0A072VMB0 | 94.4 | 666 | 37 | 0 | 5 | 670 | 1 | 666 | 0.0e+00 | 1257.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053536 | MS.gene50611 | 0.805915 | 1.06E-49 | -1.69E-46 |
| MS.gene053538 | MS.gene50611 | 0.808093 | 3.67E-50 | -1.69E-46 |
| MS.gene059424 | MS.gene50611 | 0.807733 | 4.38E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50611 | MS.gene036119 | PPI |
| MS.gene23501 | MS.gene50611 | PPI |
| MS.gene50611 | MS.gene018723 | PPI |
| MS.gene97017 | MS.gene50611 | PPI |
| MS.gene50611 | MS.gene49313 | PPI |
| MS.gene020354 | MS.gene50611 | PPI |
| MS.gene50611 | MS.gene036116 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50611.t1 | MTR_1g070180 | 94.444 | 666 | 37 | 0 | 5 | 670 | 1 | 666 | 0.0 | 1312 |
| MS.gene50611.t1 | MTR_7g096650 | 57.819 | 697 | 228 | 8 | 5 | 669 | 1 | 663 | 0.0 | 715 |
| MS.gene50611.t1 | MTR_7g096650 | 56.662 | 683 | 238 | 8 | 5 | 669 | 1 | 643 | 0.0 | 705 |
| MS.gene50611.t1 | MTR_7g096650 | 57.873 | 489 | 171 | 5 | 182 | 669 | 13 | 467 | 0.0 | 531 |
| MS.gene50611.t1 | MTR_4g051565 | 54.124 | 194 | 83 | 3 | 470 | 663 | 619 | 806 | 6.88e-56 | 204 |
| MS.gene50611.t1 | MTR_4g051565 | 34.513 | 113 | 59 | 3 | 91 | 190 | 11 | 121 | 4.13e-11 | 66.6 |
| MS.gene50611.t1 | MTR_4g051565 | 54.124 | 194 | 83 | 3 | 470 | 663 | 707 | 894 | 2.47e-55 | 203 |
| MS.gene50611.t1 | MTR_4g051565 | 30.806 | 211 | 119 | 5 | 5 | 190 | 1 | 209 | 1.34e-19 | 94.4 |
| MS.gene50611.t1 | MTR_2g087295 | 52.062 | 194 | 87 | 3 | 470 | 663 | 668 | 855 | 8.04e-54 | 199 |
| MS.gene50611.t1 | MTR_2g087295 | 30.047 | 213 | 113 | 7 | 5 | 188 | 1 | 206 | 8.86e-20 | 94.7 |
| MS.gene50611.t1 | MTR_1g077640 | 44.086 | 186 | 97 | 3 | 486 | 668 | 573 | 754 | 2.54e-42 | 164 |
| MS.gene50611.t1 | MTR_1g077640 | 32.335 | 167 | 78 | 4 | 1 | 159 | 1 | 140 | 9.29e-15 | 78.6 |
| MS.gene50611.t1 | MTR_7g063470 | 34.043 | 188 | 96 | 3 | 6 | 168 | 3 | 187 | 1.35e-24 | 109 |
| MS.gene50611.t1 | MTR_7g063470 | 32.192 | 146 | 72 | 3 | 40 | 168 | 2 | 137 | 1.13e-13 | 74.7 |
| MS.gene50611.t1 | MTR_2g078750 | 27.419 | 186 | 84 | 7 | 9 | 159 | 20 | 189 | 5.83e-13 | 71.6 |
| MS.gene50611.t1 | MTR_5g034840 | 29.064 | 203 | 86 | 7 | 9 | 159 | 14 | 210 | 1.39e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50611.t1 | AT2G31280 | 40.613 | 751 | 322 | 21 | 5 | 666 | 1 | 716 | 4.47e-147 | 444 |
| MS.gene50611.t1 | AT2G31280 | 39.714 | 768 | 322 | 22 | 5 | 666 | 1 | 733 | 7.79e-143 | 434 |
| MS.gene50611.t1 | AT2G31280 | 38.732 | 710 | 305 | 20 | 10 | 642 | 32 | 688 | 3.57e-120 | 375 |
| MS.gene50611.t1 | AT1G06150 | 50.761 | 394 | 178 | 9 | 283 | 667 | 348 | 734 | 5.33e-102 | 328 |
| MS.gene50611.t1 | AT1G06150 | 50.000 | 170 | 63 | 3 | 5 | 161 | 1 | 161 | 7.55e-41 | 159 |
| MS.gene50611.t1 | AT1G06150 | 50.761 | 394 | 176 | 10 | 283 | 667 | 348 | 732 | 3.42e-100 | 323 |
| MS.gene50611.t1 | AT1G06150 | 50.000 | 170 | 63 | 3 | 5 | 161 | 1 | 161 | 8.49e-41 | 159 |
| MS.gene50611.t1 | AT2G27230 | 40.064 | 312 | 156 | 8 | 356 | 663 | 336 | 620 | 1.21e-51 | 189 |
| MS.gene50611.t1 | AT2G27230 | 32.065 | 184 | 98 | 5 | 5 | 173 | 1 | 172 | 2.82e-20 | 95.9 |
| MS.gene50611.t1 | AT2G27230 | 40.064 | 312 | 156 | 8 | 356 | 663 | 336 | 620 | 1.21e-51 | 189 |
| MS.gene50611.t1 | AT2G27230 | 32.065 | 184 | 98 | 5 | 5 | 173 | 1 | 172 | 2.82e-20 | 95.9 |
| MS.gene50611.t1 | AT1G64625 | 46.196 | 184 | 82 | 2 | 480 | 663 | 327 | 493 | 1.05e-45 | 170 |
| MS.gene50611.t1 | AT1G64625 | 33.571 | 140 | 59 | 3 | 5 | 144 | 1 | 106 | 1.97e-14 | 77.0 |
| MS.gene50611.t1 | AT1G64625 | 46.196 | 184 | 82 | 2 | 480 | 663 | 341 | 507 | 1.85e-45 | 170 |
| MS.gene50611.t1 | AT1G64625 | 33.333 | 150 | 60 | 4 | 5 | 144 | 1 | 120 | 6.35e-14 | 75.5 |
| MS.gene50611.t1 | AT1G64625 | 46.196 | 184 | 82 | 2 | 480 | 663 | 351 | 517 | 2.06e-45 | 170 |
| MS.gene50611.t1 | AT1G64625 | 32.484 | 157 | 62 | 5 | 5 | 144 | 1 | 130 | 8.96e-13 | 71.6 |
| MS.gene50611.t1 | AT1G64625 | 56.977 | 86 | 32 | 1 | 480 | 565 | 341 | 421 | 2.99e-24 | 106 |
| MS.gene50611.t1 | AT1G64625 | 33.333 | 150 | 60 | 4 | 5 | 144 | 1 | 120 | 2.27e-14 | 76.3 |
| MS.gene50611.t1 | AT3G15240 | 28.191 | 188 | 85 | 6 | 9 | 159 | 34 | 208 | 7.17e-14 | 74.3 |
| MS.gene50611.t1 | AT5G53900 | 27.094 | 203 | 103 | 7 | 9 | 176 | 21 | 213 | 2.60e-13 | 72.4 |
Find 129 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTCAGCATACTTTATTTA+AGG | 0.129093 | 1.2:-53571021 | None:intergenic |
| TGATGGACTTGTTAAATCTT+TGG | 0.262539 | 1.2:-53572130 | None:intergenic |
| ATCTCGTCCGGAACATCTTT+TGG | 0.269914 | 1.2:+53572377 | MS.gene50611:CDS |
| CTACAATATCATTATTACTA+TGG | 0.303371 | 1.2:-53572422 | None:intergenic |
| TATGTACATTTCTGTTGTTT+TGG | 0.304838 | 1.2:-53574279 | None:intergenic |
| TCTTAGTAGTTGATGCAAAT+TGG | 0.311091 | 1.2:-53569740 | None:intergenic |
| CATCATAGTTTGAGTTTGTC+AGG | 0.324738 | 1.2:+53572588 | MS.gene50611:CDS |
| TGGGAAGAATCACAATAATC+AGG | 0.324799 | 1.2:-53570518 | None:intergenic |
| ATTGGAAGTATGCTATCTTT+TGG | 0.326772 | 1.2:+53569782 | MS.gene50611:CDS |
| CTTCTGCTATCTCAAGAAAA+TGG | 0.337897 | 1.2:-53573975 | None:intergenic |
| GTTGGACAGGTAGCTGTTAC+TGG | 0.341561 | 1.2:+53570753 | MS.gene50611:CDS |
| CTCTGATTATCAACAACAAC+AGG | 0.341637 | 1.2:+53573737 | MS.gene50611:CDS |
| AGCCTTCTGAATTAATATTT+CGG | 0.342951 | 1.2:-53572524 | None:intergenic |
| TCTATTCGTGATCACACATT+AGG | 0.346800 | 1.2:+53571742 | MS.gene50611:CDS |
| TACATAGACTGGACATCTTA+TGG | 0.354256 | 1.2:+53574296 | MS.gene50611:CDS |
| GTGTGTTACGTTTCACGCTT+TGG | 0.365954 | 1.2:-53571783 | None:intergenic |
| GACGGGTGAAACACTTGATA+TGG | 0.366173 | 1.2:+53571816 | MS.gene50611:CDS |
| AATTTCAAGCCCCTCATGTT+TGG | 0.372315 | 1.2:-53571911 | None:intergenic |
| TCACACATCCTTTCATTTGA+AGG | 0.372706 | 1.2:-53572015 | None:intergenic |
| CAAGATACCTTTGCTCCGTT+TGG | 0.374894 | 1.2:-53572801 | None:intergenic |
| CCGTATCATGTATATTCGTT+AGG | 0.377911 | 1.2:+53570626 | MS.gene50611:CDS |
| AGTTGTCTGTCCCTTGGTCT+AGG | 0.381960 | 1.2:-53572741 | None:intergenic |
| CAGCATGCTTAGTTACGCTT+TGG | 0.384514 | 1.2:-53572984 | None:intergenic |
| TCATGAATGTGTGGTGCTCT+TGG | 0.391843 | 1.2:-53574341 | None:intergenic |
| GCCTTTGTTTGGATACTGAT+TGG | 0.393403 | 1.2:+53569764 | MS.gene50611:CDS |
| ACTGATCCAAGACCGTATTA+AGG | 0.395166 | 1.2:+53572761 | MS.gene50611:CDS |
| ACTACTAAGAAGCCTTTGTT+TGG | 0.398957 | 1.2:+53569753 | MS.gene50611:CDS |
| GTAGAAAATCTTAGTAAGAA+TGG | 0.406604 | 1.2:+53573813 | MS.gene50611:CDS |
| TCATTATGAACAGAAACTTC+AGG | 0.416026 | 1.2:-53572501 | None:intergenic |
| CGTATCATGTATATTCGTTA+GGG | 0.420977 | 1.2:+53570627 | MS.gene50611:CDS |
| TTAACTCCTTAATACGGTCT+TGG | 0.421661 | 1.2:-53572767 | None:intergenic |
| AGCAGAAGCCGTAAGAAGCT+TGG | 0.422035 | 1.2:+53573990 | MS.gene50611:CDS |
| AACTGCGCAGTTGCATCATA+TGG | 0.422500 | 1.2:+53573695 | MS.gene50611:intron |
| ATTATTACTATGGCAAACTT+TGG | 0.428962 | 1.2:-53572412 | None:intergenic |
| CGTCAGTCCCAAGCTTCTTA+CGG | 0.431906 | 1.2:-53573998 | None:intergenic |
| TGGATCAGTTGTCTGTCCCT+TGG | 0.434072 | 1.2:-53572747 | None:intergenic |
| CTTGAAATTGACAGCGATCA+AGG | 0.439876 | 1.2:+53571925 | MS.gene50611:CDS |
| TAGAAAATCTTAGTAAGAAT+GGG | 0.442335 | 1.2:+53573814 | MS.gene50611:CDS |
| GTTCTGAGAGCACATACTTT+GGG | 0.443847 | 1.2:-53570537 | None:intergenic |
| GTGCAGGACACAATGGTCTC+TGG | 0.448631 | 1.2:+53572471 | MS.gene50611:CDS |
| GACGAGATTCAAAAGTCAAT+TGG | 0.450977 | 1.2:-53572362 | None:intergenic |
| CTAGGCCAGGTGAAAGTTGT+AGG | 0.452487 | 1.2:+53572718 | MS.gene50611:CDS |
| TGTTCTGAGAGCACATACTT+TGG | 0.455292 | 1.2:-53570538 | None:intergenic |
| CCACTTGGAGTTGTTCAACT+TGG | 0.456296 | 1.2:+53570996 | MS.gene50611:CDS |
| GTGGAAGATGGTGAAGAAGA+TGG | 0.466489 | 1.2:+53569714 | None:intergenic |
| CGCTTTGGATTTGACTAGGA+AGG | 0.470186 | 1.2:-53571768 | None:intergenic |
| GTTCTCTTAACTCCTTAATA+CGG | 0.473917 | 1.2:-53572773 | None:intergenic |
| GTTCAGAAGACCTCTCAAAC+TGG | 0.474775 | 1.2:-53572671 | None:intergenic |
| CAACAGAAATGTACATAGAC+TGG | 0.476550 | 1.2:+53574285 | MS.gene50611:CDS |
| GCAGAAGCCGTAAGAAGCTT+GGG | 0.478373 | 1.2:+53573991 | MS.gene50611:CDS |
| AGGAAATTTCAATGTGTATG+AGG | 0.478639 | 1.2:-53572214 | None:intergenic |
| CATATGGAAAATGACATTCA+TGG | 0.481714 | 1.2:+53573711 | MS.gene50611:CDS |
| GTAACGCCCTTCCAATGTCC+TGG | 0.482137 | 1.2:+53571838 | MS.gene50611:CDS |
| TCCTGTTTCTACAGTATGGT+TGG | 0.484140 | 1.2:+53570735 | MS.gene50611:intron |
| TTTCTACAGTATGGTTGGAC+AGG | 0.486471 | 1.2:+53570740 | MS.gene50611:intron |
| TATTAAGGAGTTAAGAGAAC+TGG | 0.491639 | 1.2:+53572776 | MS.gene50611:CDS |
| AGGATCCTCACCTTAAAAGA+TGG | 0.491951 | 1.2:-53570822 | None:intergenic |
| ACAACAACAGGGTTCAAGTT+GGG | 0.495964 | 1.2:+53573749 | MS.gene50611:CDS |
| ATGTGTGAAGGGAACAATAA+TGG | 0.497231 | 1.2:+53572030 | MS.gene50611:CDS |
| TACACATTGAAATTTCCTGC+TGG | 0.505845 | 1.2:+53572219 | MS.gene50611:CDS |
| TGACATCGATTGAAGCAAGA+TGG | 0.514120 | 1.2:-53571950 | None:intergenic |
| ATCAAGTGTTTCACCCGTCA+TGG | 0.518290 | 1.2:-53571812 | None:intergenic |
| TTACTCTCTTTGAGAAAACC+TGG | 0.521989 | 1.2:-53572267 | None:intergenic |
| CTGACAAACTCAAACTATGA+TGG | 0.527690 | 1.2:-53572587 | None:intergenic |
| ATGTATATTCGTTAGGGGAA+GGG | 0.529135 | 1.2:+53570633 | MS.gene50611:CDS |
| CCTAACGAATATACATGATA+CGG | 0.532424 | 1.2:-53570626 | None:intergenic |
| GTGCAGTATTGATTCACTGT+TGG | 0.539514 | 1.2:+53572933 | MS.gene50611:intron |
| ACTGCTTCCAAAAGATGTTC+CGG | 0.539659 | 1.2:-53572384 | None:intergenic |
| TAATGATATTGTAGATAATG+AGG | 0.540266 | 1.2:+53572431 | MS.gene50611:CDS |
| ACAGGGTTCAAGTTGGGCAA+TGG | 0.540297 | 1.2:+53573755 | MS.gene50611:CDS |
| ACCTTGGAGCAGATCTATGT+TGG | 0.541880 | 1.2:+53570560 | MS.gene50611:CDS |
| CATGTATATTCGTTAGGGGA+AGG | 0.541965 | 1.2:+53570632 | MS.gene50611:CDS |
| GCAGAGAATACGAAACAAGT+AGG | 0.544022 | 1.2:+53571985 | MS.gene50611:CDS |
| TCAACCATCTCATATTAAAG+AGG | 0.552455 | 1.2:+53572557 | MS.gene50611:CDS |
| AACAACAACAGGGTTCAAGT+TGG | 0.556005 | 1.2:+53573748 | MS.gene50611:CDS |
| ATCATAGTTTGAGTTTGTCA+GGG | 0.556500 | 1.2:+53572589 | MS.gene50611:CDS |
| ATATCCTCTTTAATATGAGA+TGG | 0.557881 | 1.2:-53572561 | None:intergenic |
| TTACATGAAGCACTTGGACC+AGG | 0.559643 | 1.2:+53572249 | MS.gene50611:CDS |
| GGGAAGAATCACAATAATCA+GGG | 0.559780 | 1.2:-53570517 | None:intergenic |
| TGGAAGATGGTGAAGAAGAT+GGG | 0.563065 | 1.2:+53569715 | None:intergenic |
| GACCGAAATATTAATTCAGA+AGG | 0.563885 | 1.2:+53572522 | MS.gene50611:CDS |
| CAAATGAAAGGATGTGTGAA+GGG | 0.564926 | 1.2:+53572019 | MS.gene50611:CDS |
| TCAAGTTGGGCAATGGAGGT+AGG | 0.566298 | 1.2:+53573762 | MS.gene50611:CDS |
| GGATGAAACCTTCAAATGAA+AGG | 0.568936 | 1.2:+53572007 | MS.gene50611:CDS |
| TCAGAAAATGACTATTGATG+TGG | 0.577639 | 1.2:+53571888 | MS.gene50611:CDS |
| TTGCTTGCAGGATCTTGACA+TGG | 0.580291 | 1.2:+53570474 | MS.gene50611:intron |
| TCATGTAACTCATAACCAGC+AGG | 0.580707 | 1.2:-53572234 | None:intergenic |
| CTAGGCCTACAACTTTCACC+TGG | 0.582898 | 1.2:-53572723 | None:intergenic |
| TTCACGCTTTGGATTTGACT+AGG | 0.583058 | 1.2:-53571772 | None:intergenic |
| AACACACAGAAAACCATGAC+GGG | 0.583428 | 1.2:+53571799 | MS.gene50611:CDS |
| GACTGCAATAATTGAACAAG+CGG | 0.583493 | 1.2:-53574319 | None:intergenic |
| GGGTTCAAGTTGGGCAATGG+AGG | 0.584395 | 1.2:+53573758 | MS.gene50611:CDS |
| TCAAATGAAAGGATGTGTGA+AGG | 0.588450 | 1.2:+53572018 | MS.gene50611:CDS |
| TAACGCCCTTCCAATGTCCT+GGG | 0.589847 | 1.2:+53571839 | MS.gene50611:CDS |
| CAGAGAATACGAAACAAGTA+GGG | 0.591572 | 1.2:+53571986 | MS.gene50611:CDS |
| CTGTTGTTGTTGATAATCAG+AGG | 0.593214 | 1.2:-53573736 | None:intergenic |
| TTAAGAGAACTGGTGCCAAA+CGG | 0.593259 | 1.2:+53572786 | MS.gene50611:CDS |
| ACTGGTGCCAAACGGAGCAA+AGG | 0.604316 | 1.2:+53572794 | MS.gene50611:CDS |
| ATTGATGTGGCCAAACATGA+GGG | 0.607100 | 1.2:+53571901 | MS.gene50611:CDS |
| TATGAGTTACATGAAGCACT+TGG | 0.610930 | 1.2:+53572243 | MS.gene50611:CDS |
| TGCTTGCAGGATCTTGACAT+GGG | 0.618674 | 1.2:+53570475 | MS.gene50611:intron |
| TCCAATCAGTATCCAAACAA+AGG | 0.620757 | 1.2:-53569765 | None:intergenic |
| TTGAGTTTGTCAGGGATCTG+CGG | 0.621537 | 1.2:+53572597 | MS.gene50611:CDS |
| TATTGATGTGGCCAAACATG+AGG | 0.623189 | 1.2:+53571900 | MS.gene50611:CDS |
| AAAGTTGTAGGCCTAGACCA+AGG | 0.627816 | 1.2:+53572730 | MS.gene50611:CDS |
| TACATCAGTGCAGGACACAA+TGG | 0.629927 | 1.2:+53572464 | MS.gene50611:CDS |
| AATGCAGGTTGGTGAAGACA+TGG | 0.636281 | 1.2:+53571687 | MS.gene50611:intron |
| AACTGGTTACTACACGAGCT+AGG | 0.639086 | 1.2:-53572654 | None:intergenic |
| GAATGGGCAGATGCTTGTTG+AGG | 0.640182 | 1.2:+53573830 | MS.gene50611:CDS |
| GTCGTAGCAGTACTACCACT+TGG | 0.641686 | 1.2:+53570981 | MS.gene50611:CDS |
| CTGTTACTGGAAAACATCAG+TGG | 0.641892 | 1.2:+53570766 | MS.gene50611:CDS |
| TCCAACATAGATCTGCTCCA+AGG | 0.643426 | 1.2:-53570561 | None:intergenic |
| AGTTGGGCAATGGAGGTAGG+AGG | 0.643833 | 1.2:+53573765 | MS.gene50611:CDS |
| CGTGTAGTAACCAGTTTGAG+AGG | 0.651078 | 1.2:+53572661 | MS.gene50611:CDS |
| AAGTTGTAGGCCTAGACCAA+GGG | 0.652681 | 1.2:+53572731 | MS.gene50611:CDS |
| TCGCAACAGATAATCCTAGA+GGG | 0.655424 | 1.2:-53570598 | None:intergenic |
| TTCGCAACAGATAATCCTAG+AGG | 0.664107 | 1.2:-53570599 | None:intergenic |
| TTGCAGGATCTTGACATGGG+AGG | 0.664946 | 1.2:+53570478 | MS.gene50611:intron |
| TAACACACAGAAAACCATGA+CGG | 0.666602 | 1.2:+53571798 | MS.gene50611:CDS |
| TGCAGGTTGGTGAAGACATG+GGG | 0.669819 | 1.2:+53571689 | MS.gene50611:intron |
| ATGCAGGTTGGTGAAGACAT+GGG | 0.672643 | 1.2:+53571688 | MS.gene50611:intron |
| AAACATTTATCATGAATGTG+TGG | 0.685784 | 1.2:-53574350 | None:intergenic |
| TTGATGTGGCCAAACATGAG+GGG | 0.686179 | 1.2:+53571902 | MS.gene50611:CDS |
| CCAAGTTGAACAACTCCAAG+TGG | 0.686515 | 1.2:-53570996 | None:intergenic |
| TATGTGCTCTCAGAACACCT+TGG | 0.696188 | 1.2:+53570544 | MS.gene50611:CDS |
| CATGCTACAGATGCTCTGTG+AGG | 0.715737 | 1.2:+53573945 | MS.gene50611:intron |
| GTATCATGTATATTCGTTAG+GGG | 0.726980 | 1.2:+53570628 | MS.gene50611:CDS |
| TCTGATTATCAACAACAACA+GGG | 0.741738 | 1.2:+53573738 | MS.gene50611:CDS |
| AACGGTGCAAGTGAAGCTCG+TGG | 0.750508 | 1.2:+53574027 | MS.gene50611:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACATTATAAAGAATAA+TGG | - | chr1.2:53571127-53571146 | None:intergenic | 10.0% |
| !! | ATATTTGACATAAAATATAA+AGG | + | chr1.2:53571418-53571437 | MS.gene50611:intron | 10.0% |
| !! | ATTGATGTTTATAAAATTAA+GGG | - | chr1.2:53573523-53573542 | None:intergenic | 10.0% |
| !! | TATTGATGTTTATAAAATTA+AGG | - | chr1.2:53573524-53573543 | None:intergenic | 10.0% |
| !! | AAATTAGGAGATTATATAAA+TGG | - | chr1.2:53571226-53571245 | None:intergenic | 15.0% |
| !! | AAGAAATTTAAGCATTAAAA+GGG | - | chr1.2:53571062-53571081 | None:intergenic | 15.0% |
| !! | AATTAGGAGATTATATAAAT+GGG | - | chr1.2:53571225-53571244 | None:intergenic | 15.0% |
| !! | TAATAATAACATAGAAGTAA+TGG | + | chr1.2:53574148-53574167 | MS.gene50611:intron | 15.0% |
| !! | TTCTTAATTCAATATCTAAA+AGG | - | chr1.2:53570041-53570060 | None:intergenic | 15.0% |
| !! | TTTAGATATTGAATTAAGAA+GGG | + | chr1.2:53570041-53570060 | MS.gene50611:intron | 15.0% |
| !! | TTTATATAATCTCCTAATTT+CGG | + | chr1.2:53571226-53571245 | MS.gene50611:intron | 15.0% |
| !! | TTTGCTTATTATGTATAATA+AGG | - | chr1.2:53571302-53571321 | None:intergenic | 15.0% |
| !!! | AAATGCCATTATTTTATTAT+TGG | - | chr1.2:53573123-53573142 | None:intergenic | 15.0% |
| !!! | AATGCCATTATTTTATTATT+GGG | - | chr1.2:53573122-53573141 | None:intergenic | 15.0% |
| !!! | AATTTTCAAAACATTGTTTT+CGG | - | chr1.2:53573412-53573431 | None:intergenic | 15.0% |
| !!! | TATGTCAAATATATTAGTTT+TGG | - | chr1.2:53571410-53571429 | None:intergenic | 15.0% |
| !!! | TTTTAGATATTGAATTAAGA+AGG | + | chr1.2:53570040-53570059 | MS.gene50611:intron | 15.0% |
| !! | AAACATCAATAAGTATGAAA+TGG | + | chr1.2:53573533-53573552 | MS.gene50611:intron | 20.0% |
| !! | ACATATGAAATTTAACTCAT+TGG | - | chr1.2:53570423-53570442 | None:intergenic | 20.0% |
| !! | ATGTAGTTGAATAAATTTGA+CGG | + | chr1.2:53571570-53571589 | MS.gene50611:intron | 20.0% |
| !! | CAAGAAATTTAAGCATTAAA+AGG | - | chr1.2:53571063-53571082 | None:intergenic | 20.0% |
| !! | CATATGAAATTTAACTCATT+GGG | - | chr1.2:53570422-53570441 | None:intergenic | 20.0% |
| !! | CTACAATATCATTATTACTA+TGG | - | chr1.2:53572425-53572444 | None:intergenic | 20.0% |
| !! | TAATGATATTGTAGATAATG+AGG | + | chr1.2:53572431-53572450 | MS.gene50611:CDS | 20.0% |
| !! | TAGAAAATCTTAGTAAGAAT+GGG | + | chr1.2:53573814-53573833 | MS.gene50611:CDS | 20.0% |
| !! | TCTTCCCAATAATAAAATAA+TGG | + | chr1.2:53573115-53573134 | MS.gene50611:intron | 20.0% |
| !!! | AAGAGAGTAAATATTTTGAT+TGG | + | chr1.2:53572280-53572299 | MS.gene50611:CDS | 20.0% |
| !!! | ATTAACATTTTGCTAACAAA+TGG | - | chr1.2:53571641-53571660 | None:intergenic | 20.0% |
| !!! | ATTTTCTAAAACAAAGACAA+AGG | + | chr1.2:53573020-53573039 | MS.gene50611:CDS | 20.0% |
| !!! | CAATTTTAGATTTGGTTTTA+AGG | + | chr1.2:53570085-53570104 | MS.gene50611:intron | 20.0% |
| !!! | CTTATCTTAACATGTTTTAT+TGG | + | chr1.2:53570443-53570462 | MS.gene50611:intron | 20.0% |
| !!! | TAAAGGCATATAATTTTTAG+TGG | + | chr1.2:53571435-53571454 | MS.gene50611:intron | 20.0% |
| !!! | TCAAGAATCAATTTTAGATT+TGG | + | chr1.2:53570077-53570096 | MS.gene50611:intron | 20.0% |
| ! | AGCCTTCTGAATTAATATTT+CGG | - | chr1.2:53572527-53572546 | None:intergenic | 25.0% |
| ! | ATATCCTCTTTAATATGAGA+TGG | - | chr1.2:53572564-53572583 | None:intergenic | 25.0% |
| ! | ATCTAAAAACAGCAAAAAGA+GGG | + | chr1.2:53572695-53572714 | MS.gene50611:CDS | 25.0% |
| ! | ATTATTACTATGGCAAACTT+TGG | - | chr1.2:53572415-53572434 | None:intergenic | 25.0% |
| ! | CGTAAAACTATTATGCATTA+TGG | + | chr1.2:53574203-53574222 | MS.gene50611:intron | 25.0% |
| ! | CTCATTGTAAAATTGTTGTA+GGG | - | chr1.2:53573622-53573641 | None:intergenic | 25.0% |
| ! | CTGATACCAACTAAAAATTT+GGG | - | chr1.2:53570273-53570292 | None:intergenic | 25.0% |
| ! | GTAGAAAATCTTAGTAAGAA+TGG | + | chr1.2:53573813-53573832 | MS.gene50611:CDS | 25.0% |
| ! | TCAGTGAAAATAGAAACAAA+CGG | + | chr1.2:53573496-53573515 | MS.gene50611:intron | 25.0% |
| ! | TCTGATACCAACTAAAAATT+TGG | - | chr1.2:53570274-53570293 | None:intergenic | 25.0% |
| ! | TTTAATCTTAAACTGCATCT+AGG | - | chr1.2:53570685-53570704 | None:intergenic | 25.0% |
| !! | ACATGTAGAAGAAAAACTTT+TGG | - | chr1.2:53572634-53572653 | None:intergenic | 25.0% |
| !! | AGTTAGAGAAAATGCATTTT+TGG | + | chr1.2:53573381-53573400 | MS.gene50611:intron | 25.0% |
| !! | ATACTGAATGAATTTTCAGA+TGG | - | chr1.2:53573791-53573810 | None:intergenic | 25.0% |
| !! | ATGTAGAAGAAAAACTTTTG+GGG | - | chr1.2:53572632-53572651 | None:intergenic | 25.0% |
| !! | CATGTAGAAGAAAAACTTTT+GGG | - | chr1.2:53572633-53572652 | None:intergenic | 25.0% |
| !! | GTTTTTACACAATTCAGTTA+TGG | + | chr1.2:53572095-53572114 | MS.gene50611:CDS | 25.0% |
| !! | TAGTCAGCATACTTTATTTA+AGG | - | chr1.2:53571024-53571043 | None:intergenic | 25.0% |
| !! | TCTAGAAAGAGTATATGTAA+AGG | - | chr1.2:53573879-53573898 | None:intergenic | 25.0% |
| !!! | AATTTCTAGTCCATCTTTTA+AGG | + | chr1.2:53570812-53570831 | MS.gene50611:CDS | 25.0% |
| !!! | ATTACATACATTGATTTGAG+TGG | + | chr1.2:53573172-53573191 | MS.gene50611:intron | 25.0% |
| !!! | GAGTAAATATTTTGATTGGA+CGG | + | chr1.2:53572284-53572303 | MS.gene50611:CDS | 25.0% |
| !!! | TATGTACATTTCTGTTGTTT+TGG | - | chr1.2:53574282-53574301 | None:intergenic | 25.0% |
| AACAATTGTCTGTAAATGCA+AGG | - | chr1.2:53570961-53570980 | None:intergenic | 30.0% | |
| AACATGAAAATCAGCAAACA+TGG | - | chr1.2:53569961-53569980 | None:intergenic | 30.0% | |
| AGCAAACATGGAAATTAGAA+AGG | - | chr1.2:53569949-53569968 | None:intergenic | 30.0% | |
| AGGAAATTTCAATGTGTATG+AGG | - | chr1.2:53572217-53572236 | None:intergenic | 30.0% | |
| AGTTGCATCATTGAAGAATA+AGG | - | chr1.2:53570845-53570864 | None:intergenic | 30.0% | |
| ATATTGAATTAAGAAGGGCA+TGG | + | chr1.2:53570046-53570065 | MS.gene50611:intron | 30.0% | |
| ATGTATAATAAGGACTGACA+GGG | - | chr1.2:53571292-53571311 | None:intergenic | 30.0% | |
| CATCTAAAAACAGCAAAAAG+AGG | + | chr1.2:53572694-53572713 | MS.gene50611:CDS | 30.0% | |
| CCTAACGAATATACATGATA+CGG | - | chr1.2:53570629-53570648 | None:intergenic | 30.0% | |
| CCTCATTGTAAAATTGTTGT+AGG | - | chr1.2:53573623-53573642 | None:intergenic | 30.0% | |
| CGTATCATGTATATTCGTTA+GGG | + | chr1.2:53570627-53570646 | MS.gene50611:CDS | 30.0% | |
| CGTCAAAATGAGTTTAGAAA+CGG | + | chr1.2:53570201-53570220 | MS.gene50611:intron | 30.0% | |
| CTTAACTGTGATAGAGAATA+TGG | + | chr1.2:53573353-53573372 | MS.gene50611:intron | 30.0% | |
| GACCGAAATATTAATTCAGA+AGG | + | chr1.2:53572522-53572541 | MS.gene50611:CDS | 30.0% | |
| GTATCATGTATATTCGTTAG+GGG | + | chr1.2:53570628-53570647 | MS.gene50611:CDS | 30.0% | |
| GTCAAAATGAGTTTAGAAAC+GGG | + | chr1.2:53570202-53570221 | MS.gene50611:intron | 30.0% | |
| GTGATAACTAATGTTCATCA+AGG | - | chr1.2:53573258-53573277 | None:intergenic | 30.0% | |
| GTTCTCTTAACTCCTTAATA+CGG | - | chr1.2:53572776-53572795 | None:intergenic | 30.0% | |
| TACCAACTAAAAATTTGGGT+TGG | - | chr1.2:53570269-53570288 | None:intergenic | 30.0% | |
| TAGCATGTAATTATTGTGCT+CGG | + | chr1.2:53571534-53571553 | MS.gene50611:intron | 30.0% | |
| TATGTATAATAAGGACTGAC+AGG | - | chr1.2:53571293-53571312 | None:intergenic | 30.0% | |
| TATTAAGGAGTTAAGAGAAC+TGG | + | chr1.2:53572776-53572795 | MS.gene50611:CDS | 30.0% | |
| TCAAAATGAGTTTAGAAACG+GGG | + | chr1.2:53570203-53570222 | MS.gene50611:intron | 30.0% | |
| TCAACCATCTCATATTAAAG+AGG | + | chr1.2:53572557-53572576 | MS.gene50611:CDS | 30.0% | |
| TCAGAAAATGACTATTGATG+TGG | + | chr1.2:53571888-53571907 | MS.gene50611:CDS | 30.0% | |
| TCATTATGAACAGAAACTTC+AGG | - | chr1.2:53572504-53572523 | None:intergenic | 30.0% | |
| TCCTGTATAGTAAGATTTGA+AGG | + | chr1.2:53570874-53570893 | MS.gene50611:intron | 30.0% | |
| TCTGATTATCAACAACAACA+GGG | + | chr1.2:53573738-53573757 | MS.gene50611:CDS | 30.0% | |
| TTCATGTTATAGAGGTTTCT+TGG | + | chr1.2:53569973-53569992 | MS.gene50611:intron | 30.0% | |
| TTTAAGCATTAAAAGGGACA+AGG | - | chr1.2:53571056-53571075 | None:intergenic | 30.0% | |
| ! | ATCATAGTTTGAGTTTGTCA+GGG | + | chr1.2:53572589-53572608 | MS.gene50611:CDS | 30.0% |
| ! | ATTCATGATAATGAGCGTAA+GGG | - | chr1.2:53573925-53573944 | None:intergenic | 30.0% |
| ! | CCTACAACAATTTTACAATG+AGG | + | chr1.2:53573620-53573639 | MS.gene50611:intron | 30.0% |
| ! | TCTTAGTAGTTGATGCAAAT+TGG | - | chr1.2:53569743-53569762 | None:intergenic | 30.0% |
| ! | TGTAGAAGAAAAACTTTTGG+GGG | - | chr1.2:53572631-53572650 | None:intergenic | 30.0% |
| ! | TGTTCTACAAGCATTTTGTT+TGG | + | chr1.2:53570118-53570137 | MS.gene50611:intron | 30.0% |
| !! | ACATTGATTTGAGTGGAATT+AGG | + | chr1.2:53573179-53573198 | MS.gene50611:intron | 30.0% |
| !! | ATTGGAAGTATGCTATCTTT+TGG | + | chr1.2:53569782-53569801 | MS.gene50611:CDS | 30.0% |
| !! | ATTTTGACGTCATATCTGAT+TGG | - | chr1.2:53570190-53570209 | None:intergenic | 30.0% |
| !! | CTTAACATGTTTTATTGGTG+TGG | + | chr1.2:53570448-53570467 | MS.gene50611:intron | 30.0% |
| !! | CTTGCATTTGTTATGTTGTT+AGG | + | chr1.2:53570380-53570399 | MS.gene50611:intron | 30.0% |
| !! | GTCATTTTCTGATAAACAGT+AGG | - | chr1.2:53571880-53571899 | None:intergenic | 30.0% |
| !! | TGACGGATTGTATAATAGTT+TGG | + | chr1.2:53571587-53571606 | MS.gene50611:intron | 30.0% |
| !! | TGATGGACTTGTTAAATCTT+TGG | - | chr1.2:53572133-53572152 | None:intergenic | 30.0% |
| !! | TGCTTGTTCAATTGCTATTT+AGG | + | chr1.2:53573075-53573094 | MS.gene50611:intron | 30.0% |
| !!! | CTCTTTTTGCTGTTTTTAGA+TGG | - | chr1.2:53572696-53572715 | None:intergenic | 30.0% |
| !!! | TGCTGATTTTCATGTTATAG+AGG | + | chr1.2:53569965-53569984 | MS.gene50611:intron | 30.0% |
| ACCAAGCAATTACCGAAATT+AGG | - | chr1.2:53571241-53571260 | None:intergenic | 35.0% | |
| ACTACTAAGAAGCCTTTGTT+TGG | + | chr1.2:53569753-53569772 | MS.gene50611:CDS | 35.0% | |
| ACTTGTAGTTCCAATTCTTG+TGG | + | chr1.2:53572883-53572902 | MS.gene50611:intron | 35.0% | |
| AGACAAAGGTAACGTCTTAT+TGG | + | chr1.2:53573034-53573053 | MS.gene50611:intron | 35.0% | |
| AGAGCCTATTCAATATCTGT+TGG | + | chr1.2:53570291-53570310 | MS.gene50611:intron | 35.0% | |
| ATGTATATTCGTTAGGGGAA+GGG | + | chr1.2:53570633-53570652 | MS.gene50611:CDS | 35.0% | |
| ATGTGTGAAGGGAACAATAA+TGG | + | chr1.2:53572030-53572049 | MS.gene50611:CDS | 35.0% | |
| CAAATGAAAGGATGTGTGAA+GGG | + | chr1.2:53572019-53572038 | MS.gene50611:CDS | 35.0% | |
| CAACAGAAATGTACATAGAC+TGG | + | chr1.2:53574285-53574304 | MS.gene50611:CDS | 35.0% | |
| CAACATTGTGCTAGAATGTA+TGG | + | chr1.2:53569811-53569830 | MS.gene50611:intron | 35.0% | |
| CAGAGAATACGAAACAAGTA+GGG | + | chr1.2:53571986-53572005 | MS.gene50611:CDS | 35.0% | |
| CCGTATCATGTATATTCGTT+AGG | + | chr1.2:53570626-53570645 | MS.gene50611:CDS | 35.0% | |
| CTCTGATTATCAACAACAAC+AGG | + | chr1.2:53573737-53573756 | MS.gene50611:CDS | 35.0% | |
| CTGACAAACTCAAACTATGA+TGG | - | chr1.2:53572590-53572609 | None:intergenic | 35.0% | |
| CTTCTGCTATCTCAAGAAAA+TGG | - | chr1.2:53573978-53573997 | None:intergenic | 35.0% | |
| GACGAGATTCAAAAGTCAAT+TGG | - | chr1.2:53572365-53572384 | None:intergenic | 35.0% | |
| GACTGCAATAATTGAACAAG+CGG | - | chr1.2:53574322-53574341 | None:intergenic | 35.0% | |
| GAGCCTATTCAATATCTGTT+GGG | + | chr1.2:53570292-53570311 | MS.gene50611:intron | 35.0% | |
| GCCTTCAAATCTTACTATAC+AGG | - | chr1.2:53570878-53570897 | None:intergenic | 35.0% | |
| GGATGAAACCTTCAAATGAA+AGG | + | chr1.2:53572007-53572026 | MS.gene50611:CDS | 35.0% | |
| GGGAAGAATCACAATAATCA+GGG | - | chr1.2:53570520-53570539 | None:intergenic | 35.0% | |
| TAACACACAGAAAACCATGA+CGG | + | chr1.2:53571798-53571817 | MS.gene50611:CDS | 35.0% | |
| TAATTTCGGTAATTGCTTGG+TGG | + | chr1.2:53571240-53571259 | MS.gene50611:intron | 35.0% | |
| TACACATTGAAATTTCCTGC+TGG | + | chr1.2:53572219-53572238 | MS.gene50611:CDS | 35.0% | |
| TACATAGACTGGACATCTTA+TGG | + | chr1.2:53574296-53574315 | MS.gene50611:CDS | 35.0% | |
| TACTGTAGAAACAGGACATT+AGG | - | chr1.2:53570731-53570750 | None:intergenic | 35.0% | |
| TCAAATGAAAGGATGTGTGA+AGG | + | chr1.2:53572018-53572037 | MS.gene50611:CDS | 35.0% | |
| TCAATGATGCAACTTGCATT+TGG | + | chr1.2:53570851-53570870 | MS.gene50611:intron | 35.0% | |
| TCACACATCCTTTCATTTGA+AGG | - | chr1.2:53572018-53572037 | None:intergenic | 35.0% | |
| TCCAATCAGTATCCAAACAA+AGG | - | chr1.2:53569768-53569787 | None:intergenic | 35.0% | |
| TCCTAATTTCGGTAATTGCT+TGG | + | chr1.2:53571237-53571256 | MS.gene50611:intron | 35.0% | |
| TCTATTCGTGATCACACATT+AGG | + | chr1.2:53571742-53571761 | MS.gene50611:CDS | 35.0% | |
| TGGGAAGAATCACAATAATC+AGG | - | chr1.2:53570521-53570540 | None:intergenic | 35.0% | |
| TTAACTCCTTAATACGGTCT+TGG | - | chr1.2:53572770-53572789 | None:intergenic | 35.0% | |
| TTAGTTATCACTGAAGCCAA+TGG | + | chr1.2:53573267-53573286 | MS.gene50611:intron | 35.0% | |
| TTATGTCAAGACTTGACATC+TGG | - | chr1.2:53570349-53570368 | None:intergenic | 35.0% | |
| ! | AACGATGAGACATTTTTGTC+TGG | - | chr1.2:53572078-53572097 | None:intergenic | 35.0% |
| ! | AAGATTTGAAGGCGTGTAAT+TGG | + | chr1.2:53570885-53570904 | MS.gene50611:intron | 35.0% |
| ! | ATCATTTTCTACATCAGTGC+AGG | + | chr1.2:53572455-53572474 | MS.gene50611:CDS | 35.0% |
| ! | CATCATAGTTTGAGTTTGTC+AGG | + | chr1.2:53572588-53572607 | MS.gene50611:CDS | 35.0% |
| ! | GATTCATGATAATGAGCGTA+AGG | - | chr1.2:53573926-53573945 | None:intergenic | 35.0% |
| ! | TATAGAGGTTTCTTGGTGAT+TGG | + | chr1.2:53569980-53569999 | MS.gene50611:intron | 35.0% |
| ! | TATGAGTTACATGAAGCACT+TGG | + | chr1.2:53572243-53572262 | MS.gene50611:CDS | 35.0% |
| ! | TCAGCTTCTACATTTTCTGA+TGG | - | chr1.2:53572150-53572169 | None:intergenic | 35.0% |
| ! | TTACTCTCTTTGAGAAAACC+TGG | - | chr1.2:53572270-53572289 | None:intergenic | 35.0% |
| ! | TTTAAGCTTTGTGAATAGCC+AGG | + | chr1.2:53573230-53573249 | MS.gene50611:intron | 35.0% |
| ! | TTTTCTAATCCTGTCTCAGT+AGG | + | chr1.2:53572837-53572856 | MS.gene50611:intron | 35.0% |
| !! | AATGTCCTGTTTCTACAGTA+TGG | + | chr1.2:53570731-53570750 | MS.gene50611:intron | 35.0% |
| !! | ATTGACTTTTGAATCTCGTC+CGG | + | chr1.2:53572365-53572384 | MS.gene50611:CDS | 35.0% |
| !! | CTGTTGTTGTTGATAATCAG+AGG | - | chr1.2:53573739-53573758 | None:intergenic | 35.0% |
| !!! | ACCTTACAAGTTGGTTTTGT+GGG | + | chr1.2:53570232-53570251 | MS.gene50611:intron | 35.0% |
| !!! | AGGCTTTGGTTTTTTGATAG+TGG | + | chr1.2:53572857-53572876 | MS.gene50611:intron | 35.0% |
| !!! | TATTTTGATTGGACGGTACA+AGG | + | chr1.2:53572291-53572310 | MS.gene50611:CDS | 35.0% |
| AAAACAGCAAAAAGAGGGCT+AGG | + | chr1.2:53572700-53572719 | MS.gene50611:CDS | 40.0% | |
| AAACCTTCAGCCACAAGAAT+TGG | - | chr1.2:53572896-53572915 | None:intergenic | 40.0% | |
| AAATGAAATTCCAGCTACCC+TGG | - | chr1.2:53573319-53573338 | None:intergenic | 40.0% | |
| AACAACAACAGGGTTCAAGT+TGG | + | chr1.2:53573748-53573767 | MS.gene50611:CDS | 40.0% | |
| AACACACAGAAAACCATGAC+GGG | + | chr1.2:53571799-53571818 | MS.gene50611:CDS | 40.0% | |
| AATGAAATTCCAGCTACCCT+GGG | - | chr1.2:53573318-53573337 | None:intergenic | 40.0% | |
| AATTTCAAGCCCCTCATGTT+TGG | - | chr1.2:53571914-53571933 | None:intergenic | 40.0% | |
| ACTGATCCAAGACCGTATTA+AGG | + | chr1.2:53572761-53572780 | MS.gene50611:CDS | 40.0% | |
| ACTGCTTCCAAAAGATGTTC+CGG | - | chr1.2:53572387-53572406 | None:intergenic | 40.0% | |
| AGGATCCTCACCTTAAAAGA+TGG | - | chr1.2:53570825-53570844 | None:intergenic | 40.0% | |
| AGGGTAGCTGGAATTTCATT+TGG | + | chr1.2:53573318-53573337 | MS.gene50611:intron | 40.0% | |
| ATCGATGAATTGTCTGTCAC+AGG | + | chr1.2:53574255-53574274 | MS.gene50611:intron | 40.0% | |
| ATTGATGTGGCCAAACATGA+GGG | + | chr1.2:53571901-53571920 | MS.gene50611:CDS | 40.0% | |
| CATGTATATTCGTTAGGGGA+AGG | + | chr1.2:53570632-53570651 | MS.gene50611:CDS | 40.0% | |
| CATTTGCCTGTCAACATGTA+AGG | - | chr1.2:53571508-53571527 | None:intergenic | 40.0% | |
| CTAATGTTCATCAAGGAACC+TGG | - | chr1.2:53573251-53573270 | None:intergenic | 40.0% | |
| CTGTTACTGGAAAACATCAG+TGG | + | chr1.2:53570766-53570785 | MS.gene50611:CDS | 40.0% | |
| CTTGAAATTGACAGCGATCA+AGG | + | chr1.2:53571925-53571944 | MS.gene50611:CDS | 40.0% | |
| GCAGAGAATACGAAACAAGT+AGG | + | chr1.2:53571985-53572004 | MS.gene50611:CDS | 40.0% | |
| GCATTCACAGATGACAGAAA+AGG | - | chr1.2:53571672-53571691 | None:intergenic | 40.0% | |
| GGAAGACATTCTTGATGCAT+GGG | - | chr1.2:53573101-53573120 | None:intergenic | 40.0% | |
| GGTATCCTCGTAAAAAGACT+CGG | - | chr1.2:53572196-53572215 | None:intergenic | 40.0% | |
| TATTGATGTGGCCAAACATG+AGG | + | chr1.2:53571900-53571919 | MS.gene50611:CDS | 40.0% | |
| TCATGTAACTCATAACCAGC+AGG | - | chr1.2:53572237-53572256 | None:intergenic | 40.0% | |
| TCCAACCATACTGTAGAAAC+AGG | - | chr1.2:53570739-53570758 | None:intergenic | 40.0% | |
| TCGATGAATTGTCTGTCACA+GGG | + | chr1.2:53574256-53574275 | MS.gene50611:intron | 40.0% | |
| TCGCAACAGATAATCCTAGA+GGG | - | chr1.2:53570601-53570620 | None:intergenic | 40.0% | |
| TGGCCCAACAGATATTGAAT+AGG | - | chr1.2:53570298-53570317 | None:intergenic | 40.0% | |
| TGTGAATGTTGTTGCCAATG+CGG | + | chr1.2:53571088-53571107 | MS.gene50611:intron | 40.0% | |
| TTCGCAACAGATAATCCTAG+AGG | - | chr1.2:53570602-53570621 | None:intergenic | 40.0% | |
| TTTCTACAGTATGGTTGGAC+AGG | + | chr1.2:53570740-53570759 | MS.gene50611:intron | 40.0% | |
| TTTCTGTCATCTGTGAATGC+AGG | + | chr1.2:53571672-53571691 | MS.gene50611:intron | 40.0% | |
| ! | AATAGCTTTTCCCAGGACAT+TGG | - | chr1.2:53571852-53571871 | None:intergenic | 40.0% |
| ! | ACAACAACAGGGTTCAAGTT+GGG | + | chr1.2:53573749-53573768 | MS.gene50611:CDS | 40.0% |
| ! | ATGCATGTGTTTTGTGGTTG+AGG | + | chr1.2:53574059-53574078 | MS.gene50611:CDS | 40.0% |
| ! | ATGTAAGGCTTGGTAAGTCA+GGG | - | chr1.2:53571493-53571512 | None:intergenic | 40.0% |
| ! | ATGTGTTTTGTGGTTGAGGT+AGG | + | chr1.2:53574063-53574082 | MS.gene50611:intron | 40.0% |
| ! | GAAGACATGCATGTGTTTTG+TGG | + | chr1.2:53574053-53574072 | MS.gene50611:CDS | 40.0% |
| ! | GAGTGGAATTAGGCTTTGAT+CGG | + | chr1.2:53573189-53573208 | MS.gene50611:intron | 40.0% |
| ! | GATTCTCTTTTGAACCGCAT+TGG | - | chr1.2:53571105-53571124 | None:intergenic | 40.0% |
| ! | GATTTTTCACATGACCCTCT+AGG | + | chr1.2:53570584-53570603 | MS.gene50611:CDS | 40.0% |
| ! | GCCTTTGTTTGGATACTGAT+TGG | + | chr1.2:53569764-53569783 | MS.gene50611:CDS | 40.0% |
| ! | TGACATCGATTGAAGCAAGA+TGG | - | chr1.2:53571953-53571972 | None:intergenic | 40.0% |
| ! | TTAAGAGAACTGGTGCCAAA+CGG | + | chr1.2:53572786-53572805 | MS.gene50611:CDS | 40.0% |
| ! | TTCACGCTTTGGATTTGACT+AGG | - | chr1.2:53571775-53571794 | None:intergenic | 40.0% |
| ! | TTGGGACTGACGATTTTGAA+CGG | + | chr1.2:53574009-53574028 | MS.gene50611:CDS | 40.0% |
| !! | ACGTCTTATTGGCTTTGAGA+TGG | + | chr1.2:53573045-53573064 | MS.gene50611:intron | 40.0% |
| !! | GTGCAGTATTGATTCACTGT+TGG | + | chr1.2:53572933-53572952 | MS.gene50611:intron | 40.0% |
| !! | GTTCTGAGAGCACATACTTT+GGG | - | chr1.2:53570540-53570559 | None:intergenic | 40.0% |
| !! | TCCTGTTTCTACAGTATGGT+TGG | + | chr1.2:53570735-53570754 | MS.gene50611:intron | 40.0% |
| !! | TGTTCTGAGAGCACATACTT+TGG | - | chr1.2:53570541-53570560 | None:intergenic | 40.0% |
| !!! | CACCTTACAAGTTGGTTTTG+TGG | + | chr1.2:53570231-53570250 | MS.gene50611:intron | 40.0% |
| !!! | CCTTACAAGTTGGTTTTGTG+GGG | + | chr1.2:53570233-53570252 | MS.gene50611:intron | 40.0% |
| !!! | CTAGTCCATCTTTTAAGGTG+AGG | + | chr1.2:53570817-53570836 | MS.gene50611:intron | 40.0% |
| !!! | GGCCAACCCAAATTTTTAGT+TGG | + | chr1.2:53570264-53570283 | MS.gene50611:intron | 40.0% |
| AAACCAAAGCCTACTGAGAC+AGG | - | chr1.2:53572849-53572868 | None:intergenic | 45.0% | |
| AAAGTTGTAGGCCTAGACCA+AGG | + | chr1.2:53572730-53572749 | MS.gene50611:CDS | 45.0% | |
| AACTGCGCAGTTGCATCATA+TGG | + | chr1.2:53573695-53573714 | MS.gene50611:intron | 45.0% | |
| AACTGGTTACTACACGAGCT+AGG | - | chr1.2:53572657-53572676 | None:intergenic | 45.0% | |
| AAGTTGTAGGCCTAGACCAA+GGG | + | chr1.2:53572731-53572750 | MS.gene50611:CDS | 45.0% | |
| AATCCTGTCTCAGTAGGCTT+TGG | + | chr1.2:53572843-53572862 | MS.gene50611:intron | 45.0% | |
| ACCAAGCCTTACATGTTGAC+AGG | + | chr1.2:53571499-53571518 | MS.gene50611:intron | 45.0% | |
| ACCTATGCCATTGTAACCCA+GGG | + | chr1.2:53573299-53573318 | MS.gene50611:intron | 45.0% | |
| ACCTTGGAGCAGATCTATGT+TGG | + | chr1.2:53570560-53570579 | MS.gene50611:CDS | 45.0% | |
| ATCAAGTGTTTCACCCGTCA+TGG | - | chr1.2:53571815-53571834 | None:intergenic | 45.0% | |
| CAAGATACCTTTGCTCCGTT+TGG | - | chr1.2:53572804-53572823 | None:intergenic | 45.0% | |
| CAGCATGCTTAGTTACGCTT+TGG | - | chr1.2:53572987-53573006 | None:intergenic | 45.0% | |
| CCACTTGGAGTTGTTCAACT+TGG | + | chr1.2:53570996-53571015 | MS.gene50611:CDS | 45.0% | |
| CCCCACAAAACCAACTTGTA+AGG | - | chr1.2:53570236-53570255 | None:intergenic | 45.0% | |
| CGTGTAGTAACCAGTTTGAG+AGG | + | chr1.2:53572661-53572680 | MS.gene50611:CDS | 45.0% | |
| GACGGGTGAAACACTTGATA+TGG | + | chr1.2:53571816-53571835 | MS.gene50611:CDS | 45.0% | |
| GGGAAGACATTCTTGATGCA+TGG | - | chr1.2:53573102-53573121 | None:intergenic | 45.0% | |
| GTCAAGACTTGACATCTGGA+GGG | - | chr1.2:53570345-53570364 | None:intergenic | 45.0% | |
| GTGTGTTACGTTTCACGCTT+TGG | - | chr1.2:53571786-53571805 | None:intergenic | 45.0% | |
| GTTACAATGGCATAGGTGTG+AGG | - | chr1.2:53573296-53573315 | None:intergenic | 45.0% | |
| GTTCAGAAGACCTCTCAAAC+TGG | - | chr1.2:53572674-53572693 | None:intergenic | 45.0% | |
| GTTCCAATTCTTGTGGCTGA+AGG | + | chr1.2:53572890-53572909 | MS.gene50611:intron | 45.0% | |
| TACATCAGTGCAGGACACAA+TGG | + | chr1.2:53572464-53572483 | MS.gene50611:CDS | 45.0% | |
| TATGTGCTCTCAGAACACCT+TGG | + | chr1.2:53570544-53570563 | MS.gene50611:CDS | 45.0% | |
| TCATGAATGTGTGGTGCTCT+TGG | - | chr1.2:53574344-53574363 | None:intergenic | 45.0% | |
| TCCAACATAGATCTGCTCCA+AGG | - | chr1.2:53570564-53570583 | None:intergenic | 45.0% | |
| TGCTTGCAGGATCTTGACAT+GGG | + | chr1.2:53570475-53570494 | MS.gene50611:intron | 45.0% | |
| TGTCAAGACTTGACATCTGG+AGG | - | chr1.2:53570346-53570365 | None:intergenic | 45.0% | |
| TGTCATCTGTGAATGCAGGT+TGG | + | chr1.2:53571676-53571695 | MS.gene50611:intron | 45.0% | |
| TTGAGTTTGTCAGGGATCTG+CGG | + | chr1.2:53572597-53572616 | MS.gene50611:CDS | 45.0% | |
| TTGATGTGGCCAAACATGAG+GGG | + | chr1.2:53571902-53571921 | MS.gene50611:CDS | 45.0% | |
| TTGCTTGCAGGATCTTGACA+TGG | + | chr1.2:53570474-53570493 | MS.gene50611:intron | 45.0% | |
| ! | ATCTCGTCCGGAACATCTTT+TGG | + | chr1.2:53572377-53572396 | MS.gene50611:CDS | 45.0% |
| ! | CATAGGTGTGAGGTATCCAT+TGG | - | chr1.2:53573286-53573305 | None:intergenic | 45.0% |
| ! | CATGTAAGGCTTGGTAAGTC+AGG | - | chr1.2:53571494-53571513 | None:intergenic | 45.0% |
| ! | CCAAGTTGAACAACTCCAAG+TGG | - | chr1.2:53570999-53571018 | None:intergenic | 45.0% |
| ! | CGCTTTGGATTTGACTAGGA+AGG | - | chr1.2:53571771-53571790 | None:intergenic | 45.0% |
| ! | CTTTTCCCAGGACATTGGAA+GGG | - | chr1.2:53571847-53571866 | None:intergenic | 45.0% |
| ! | GGAGATGAATAGCTTTTCCC+AGG | - | chr1.2:53571859-53571878 | None:intergenic | 45.0% |
| ! | TCAGACCGAGTCTTTTTACG+AGG | + | chr1.2:53572188-53572207 | MS.gene50611:CDS | 45.0% |
| ! | TTACATGAAGCACTTGGACC+AGG | + | chr1.2:53572249-53572268 | MS.gene50611:CDS | 45.0% |
| !! | AATGCAGGTTGGTGAAGACA+TGG | + | chr1.2:53571687-53571706 | MS.gene50611:intron | 45.0% |
| !! | ATGCAGGTTGGTGAAGACAT+GGG | + | chr1.2:53571688-53571707 | MS.gene50611:intron | 45.0% |
| !! | CTTGGTGGTGATTGAAGCAT+TGG | + | chr1.2:53571255-53571274 | MS.gene50611:intron | 45.0% |
| !! | GGAACATCTTTTGGAAGCAG+TGG | + | chr1.2:53572386-53572405 | MS.gene50611:CDS | 45.0% |
| !!! | TGGTTTTGTGGGGTTGAGTT+AGG | + | chr1.2:53570243-53570262 | MS.gene50611:intron | 45.0% |
| ACCCTGGGTTACAATGGCAT+AGG | - | chr1.2:53573303-53573322 | None:intergenic | 50.0% | |
| AGCAGAAGCCGTAAGAAGCT+TGG | + | chr1.2:53573990-53574009 | MS.gene50611:CDS | 50.0% | |
| AGTTGTCTGTCCCTTGGTCT+AGG | - | chr1.2:53572744-53572763 | None:intergenic | 50.0% | |
| CACCTATGCCATTGTAACCC+AGG | + | chr1.2:53573298-53573317 | MS.gene50611:intron | 50.0% | |
| CACCTGCTATCAGATCACCT+GGG | + | chr1.2:53570316-53570335 | MS.gene50611:intron | 50.0% | |
| CATGCTACAGATGCTCTGTG+AGG | + | chr1.2:53573945-53573964 | MS.gene50611:intron | 50.0% | |
| CGTCAGTCCCAAGCTTCTTA+CGG | - | chr1.2:53574001-53574020 | None:intergenic | 50.0% | |
| CTAGGCCAGGTGAAAGTTGT+AGG | + | chr1.2:53572718-53572737 | MS.gene50611:CDS | 50.0% | |
| CTAGGCCTACAACTTTCACC+TGG | - | chr1.2:53572726-53572745 | None:intergenic | 50.0% | |
| GCAGAAGCCGTAAGAAGCTT+GGG | + | chr1.2:53573991-53574010 | MS.gene50611:CDS | 50.0% | |
| GCCTGTCAACATGTAAGGCT+TGG | - | chr1.2:53571503-53571522 | None:intergenic | 50.0% | |
| GGGTGTCTCACCTTACAAGT+TGG | + | chr1.2:53570223-53570242 | MS.gene50611:intron | 50.0% | |
| GTCGTAGCAGTACTACCACT+TGG | + | chr1.2:53570981-53571000 | MS.gene50611:CDS | 50.0% | |
| GTTGGACAGGTAGCTGTTAC+TGG | + | chr1.2:53570753-53570772 | MS.gene50611:CDS | 50.0% | |
| TAACGCCCTTCCAATGTCCT+GGG | + | chr1.2:53571839-53571858 | MS.gene50611:CDS | 50.0% | |
| TGATGCAACTGCGCAGTTGT+AGG | - | chr1.2:53573693-53573712 | None:intergenic | 50.0% | |
| TGGATCAGTTGTCTGTCCCT+TGG | - | chr1.2:53572750-53572769 | None:intergenic | 50.0% | |
| TTGCAGGATCTTGACATGGG+AGG | + | chr1.2:53570478-53570497 | MS.gene50611:intron | 50.0% | |
| TTGGTGTGGCAATTGCTTGC+AGG | + | chr1.2:53570462-53570481 | MS.gene50611:intron | 50.0% | |
| ! | GAATGGGCAGATGCTTGTTG+AGG | + | chr1.2:53573830-53573849 | MS.gene50611:CDS | 50.0% |
| ! | GCTTTTCCCAGGACATTGGA+AGG | - | chr1.2:53571848-53571867 | None:intergenic | 50.0% |
| !! | ACAGGGTTCAAGTTGGGCAA+TGG | + | chr1.2:53573755-53573774 | MS.gene50611:CDS | 50.0% |
| !! | TCAAGTTGGGCAATGGAGGT+AGG | + | chr1.2:53573762-53573781 | MS.gene50611:CDS | 50.0% |
| !! | TGCAGGTTGGTGAAGACATG+GGG | + | chr1.2:53571689-53571708 | MS.gene50611:intron | 50.0% |
| AACGGTGCAAGTGAAGCTCG+TGG | + | chr1.2:53574027-53574046 | MS.gene50611:CDS | 55.0% | |
| AGCAAAAAGAGGGCTAGGCC+AGG | + | chr1.2:53572705-53572724 | MS.gene50611:CDS | 55.0% | |
| AGTTGGGCAATGGAGGTAGG+AGG | + | chr1.2:53573765-53573784 | MS.gene50611:CDS | 55.0% | |
| CCACCTGCTATCAGATCACC+TGG | + | chr1.2:53570315-53570334 | MS.gene50611:intron | 55.0% | |
| CCAGCTACCCTGGGTTACAA+TGG | - | chr1.2:53573309-53573328 | None:intergenic | 55.0% | |
| CCAGGTGATCTGATAGCAGG+TGG | - | chr1.2:53570318-53570337 | None:intergenic | 55.0% | |
| CCATTGTAACCCAGGGTAGC+TGG | + | chr1.2:53573306-53573325 | MS.gene50611:intron | 55.0% | |
| GACCCAGGTGATCTGATAGC+AGG | - | chr1.2:53570321-53570340 | None:intergenic | 55.0% | |
| GTAACGCCCTTCCAATGTCC+TGG | + | chr1.2:53571838-53571857 | MS.gene50611:CDS | 55.0% | |
| GTGCAGGACACAATGGTCTC+TGG | + | chr1.2:53572471-53572490 | MS.gene50611:CDS | 55.0% | |
| ! | ACTGGTGCCAAACGGAGCAA+AGG | + | chr1.2:53572794-53572813 | MS.gene50611:CDS | 55.0% |
| !! | GGGTTCAAGTTGGGCAATGG+AGG | + | chr1.2:53573758-53573777 | MS.gene50611:CDS | 55.0% |
| TGACATCTGGAGGGTGACCC+AGG | - | chr1.2:53570336-53570355 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 53569721 | 53574363 | 53569721 | ID=MS.gene50611 |
| chr1.2 | mRNA | 53569721 | 53574363 | 53569721 | ID=MS.gene50611.t1;Parent=MS.gene50611 |
| chr1.2 | exon | 53569721 | 53569827 | 53569721 | ID=MS.gene50611.t1.exon1;Parent=MS.gene50611.t1 |
| chr1.2 | CDS | 53569721 | 53569827 | 53569721 | ID=cds.MS.gene50611.t1;Parent=MS.gene50611.t1 |
| chr1.2 | exon | 53570484 | 53570654 | 53570484 | ID=MS.gene50611.t1.exon2;Parent=MS.gene50611.t1 |
| chr1.2 | CDS | 53570484 | 53570654 | 53570484 | ID=cds.MS.gene50611.t1;Parent=MS.gene50611.t1 |
| chr1.2 | exon | 53570749 | 53570833 | 53570749 | ID=MS.gene50611.t1.exon3;Parent=MS.gene50611.t1 |
| chr1.2 | CDS | 53570749 | 53570833 | 53570749 | ID=cds.MS.gene50611.t1;Parent=MS.gene50611.t1 |
| chr1.2 | exon | 53570972 | 53571031 | 53570972 | ID=MS.gene50611.t1.exon4;Parent=MS.gene50611.t1 |
| chr1.2 | CDS | 53570972 | 53571031 | 53570972 | ID=cds.MS.gene50611.t1;Parent=MS.gene50611.t1 |
| chr1.2 | exon | 53571694 | 53572815 | 53571694 | ID=MS.gene50611.t1.exon5;Parent=MS.gene50611.t1 |
| chr1.2 | CDS | 53571694 | 53572815 | 53571694 | ID=cds.MS.gene50611.t1;Parent=MS.gene50611.t1 |
| chr1.2 | exon | 53572934 | 53573041 | 53572934 | ID=MS.gene50611.t1.exon6;Parent=MS.gene50611.t1 |
| chr1.2 | CDS | 53572934 | 53573041 | 53572934 | ID=cds.MS.gene50611.t1;Parent=MS.gene50611.t1 |
| chr1.2 | exon | 53573705 | 53573851 | 53573705 | ID=MS.gene50611.t1.exon7;Parent=MS.gene50611.t1 |
| chr1.2 | CDS | 53573705 | 53573851 | 53573705 | ID=cds.MS.gene50611.t1;Parent=MS.gene50611.t1 |
| chr1.2 | exon | 53573955 | 53574080 | 53573955 | ID=MS.gene50611.t1.exon8;Parent=MS.gene50611.t1 |
| chr1.2 | CDS | 53573955 | 53574080 | 53573955 | ID=cds.MS.gene50611.t1;Parent=MS.gene50611.t1 |
| chr1.2 | exon | 53574277 | 53574363 | 53574277 | ID=MS.gene50611.t1.exon9;Parent=MS.gene50611.t1 |
| chr1.2 | CDS | 53574277 | 53574363 | 53574277 | ID=cds.MS.gene50611.t1;Parent=MS.gene50611.t1 |
| Gene Sequence |
| Protein sequence |
