Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49313.t1 | XP_013468526.1 | 94.1 | 666 | 39 | 0 | 1 | 666 | 1 | 666 | 0.00E+00 | 1250.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49313.t1 | P0C7P8 | 41.7 | 751 | 331 | 22 | 1 | 663 | 1 | 732 | 8.2e-120 | 432.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49313.t1 | A0A072VMB0 | 94.1 | 666 | 39 | 0 | 1 | 666 | 1 | 666 | 0.0e+00 | 1250.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049350 | MS.gene49313 | 0.815621 | 8.42E-52 | -1.69E-46 |
| MS.gene049418 | MS.gene49313 | 0.809632 | 1.72E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene49313 | 0.848085 | 7.67E-60 | -1.69E-46 |
| MS.gene049807 | MS.gene49313 | 0.807872 | 4.09E-50 | -1.69E-46 |
| MS.gene051018 | MS.gene49313 | 0.813045 | 3.12E-51 | -1.69E-46 |
| MS.gene051021 | MS.gene49313 | 0.817835 | 2.68E-52 | -1.69E-46 |
| MS.gene05150 | MS.gene49313 | 0.801577 | 8.43E-49 | -1.69E-46 |
| MS.gene051648 | MS.gene49313 | 0.812188 | 4.81E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene49313 | 0.829179 | 5.95E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene49313 | 0.850823 | 1.32E-60 | -1.69E-46 |
| MS.gene051744 | MS.gene49313 | 0.809822 | 1.56E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene49313 | 0.807818 | 4.20E-50 | -1.69E-46 |
| MS.gene052732 | MS.gene49313 | 0.836113 | 1.13E-56 | -1.69E-46 |
| MS.gene053144 | MS.gene49313 | 0.869306 | 3.42E-66 | -1.69E-46 |
| MS.gene053174 | MS.gene49313 | 0.800833 | 1.20E-48 | -1.69E-46 |
| MS.gene053536 | MS.gene49313 | 0.86349 | 2.40E-64 | -1.69E-46 |
| MS.gene053538 | MS.gene49313 | 0.859554 | 3.82E-63 | -1.69E-46 |
| MS.gene053581 | MS.gene49313 | 0.803975 | 2.70E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene49313 | 0.87166 | 5.77E-67 | -1.69E-46 |
| MS.gene055083 | MS.gene49313 | 0.80329 | 3.74E-49 | -1.69E-46 |
| MS.gene055144 | MS.gene49313 | 0.807346 | 5.29E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene49313 | 0.825138 | 5.52E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene49313 | 0.817937 | 2.55E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene49313 | 0.815121 | 1.09E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene49313 | 0.891214 | 4.87E-74 | -1.69E-46 |
| MS.gene055580 | MS.gene49313 | -0.833015 | 6.80E-56 | -1.69E-46 |
| MS.gene055764 | MS.gene49313 | 0.823982 | 1.03E-53 | -1.69E-46 |
| MS.gene055891 | MS.gene49313 | 0.801104 | 1.05E-48 | -1.69E-46 |
| MS.gene056043 | MS.gene49313 | -0.81023 | 1.28E-50 | -1.69E-46 |
| MS.gene056228 | MS.gene49313 | 0.804054 | 2.60E-49 | -1.69E-46 |
| MS.gene057082 | MS.gene49313 | 0.814933 | 1.20E-51 | -1.69E-46 |
| MS.gene058649 | MS.gene49313 | 0.805594 | 1.24E-49 | -1.69E-46 |
| MS.gene058668 | MS.gene49313 | 0.827691 | 1.36E-54 | -1.69E-46 |
| MS.gene05894 | MS.gene49313 | 0.841677 | 4.11E-58 | -1.69E-46 |
| MS.gene059154 | MS.gene49313 | 0.813809 | 2.12E-51 | -1.69E-46 |
| MS.gene059424 | MS.gene49313 | 0.859903 | 3.00E-63 | -1.69E-46 |
| MS.gene060519 | MS.gene49313 | 0.841831 | 3.74E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23501 | MS.gene49313 | PPI |
| MS.gene49313 | MS.gene036116 | PPI |
| MS.gene49313 | MS.gene018723 | PPI |
| MS.gene49313 | MS.gene036119 | PPI |
| MS.gene97017 | MS.gene49313 | PPI |
| MS.gene50611 | MS.gene49313 | PPI |
| MS.gene020354 | MS.gene49313 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49313.t1 | MTR_1g070180 | 94.144 | 666 | 39 | 0 | 1 | 666 | 1 | 666 | 0.0 | 1304 |
| MS.gene49313.t1 | MTR_7g096650 | 57.389 | 697 | 231 | 8 | 1 | 665 | 1 | 663 | 0.0 | 704 |
| MS.gene49313.t1 | MTR_7g096650 | 56.223 | 683 | 241 | 8 | 1 | 665 | 1 | 643 | 0.0 | 693 |
| MS.gene49313.t1 | MTR_7g096650 | 57.669 | 489 | 172 | 5 | 178 | 665 | 13 | 467 | 0.0 | 526 |
| MS.gene49313.t1 | MTR_7g063470 | 28.870 | 717 | 389 | 27 | 2 | 650 | 3 | 666 | 1.68e-66 | 231 |
| MS.gene49313.t1 | MTR_4g051565 | 54.124 | 194 | 83 | 3 | 466 | 659 | 619 | 806 | 5.78e-56 | 204 |
| MS.gene49313.t1 | MTR_4g051565 | 34.454 | 119 | 63 | 3 | 87 | 192 | 11 | 127 | 1.03e-11 | 68.6 |
| MS.gene49313.t1 | MTR_7g063470 | 28.443 | 668 | 372 | 25 | 36 | 650 | 2 | 616 | 2.22e-55 | 199 |
| MS.gene49313.t1 | MTR_4g051565 | 54.124 | 194 | 83 | 3 | 466 | 659 | 707 | 894 | 2.47e-55 | 203 |
| MS.gene49313.t1 | MTR_4g051565 | 31.050 | 219 | 120 | 7 | 1 | 192 | 1 | 215 | 1.41e-20 | 97.4 |
| MS.gene49313.t1 | MTR_2g087295 | 52.062 | 194 | 87 | 3 | 466 | 659 | 668 | 855 | 9.67e-54 | 198 |
| MS.gene49313.t1 | MTR_2g087295 | 29.864 | 221 | 119 | 7 | 1 | 192 | 1 | 214 | 1.55e-20 | 97.1 |
| MS.gene49313.t1 | MTR_1g077640 | 44.086 | 186 | 97 | 3 | 482 | 664 | 573 | 754 | 2.62e-42 | 164 |
| MS.gene49313.t1 | MTR_1g077640 | 32.515 | 163 | 75 | 4 | 1 | 155 | 5 | 140 | 9.34e-15 | 78.6 |
| MS.gene49313.t1 | MTR_2g078750 | 27.419 | 186 | 84 | 7 | 5 | 155 | 20 | 189 | 5.24e-13 | 72.0 |
| MS.gene49313.t1 | MTR_5g034840 | 30.049 | 203 | 84 | 8 | 5 | 155 | 14 | 210 | 8.19e-13 | 70.9 |
| MS.gene49313.t1 | MTR_1g018810 | 28.426 | 197 | 78 | 9 | 5 | 152 | 12 | 194 | 6.64e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49313.t1 | AT2G31280 | 40.613 | 751 | 322 | 21 | 1 | 662 | 1 | 716 | 6.23e-146 | 441 |
| MS.gene49313.t1 | AT2G31280 | 39.714 | 768 | 322 | 22 | 1 | 662 | 1 | 733 | 1.17e-141 | 431 |
| MS.gene49313.t1 | AT2G31280 | 39.087 | 701 | 313 | 20 | 7 | 638 | 33 | 688 | 1.18e-119 | 374 |
| MS.gene49313.t1 | AT1G06150 | 49.757 | 412 | 180 | 10 | 261 | 663 | 341 | 734 | 1.62e-101 | 326 |
| MS.gene49313.t1 | AT1G06150 | 49.412 | 170 | 64 | 3 | 1 | 157 | 1 | 161 | 4.81e-40 | 157 |
| MS.gene49313.t1 | AT1G06150 | 49.757 | 412 | 178 | 11 | 261 | 663 | 341 | 732 | 1.07e-99 | 322 |
| MS.gene49313.t1 | AT1G06150 | 49.412 | 170 | 64 | 3 | 1 | 157 | 1 | 161 | 5.31e-40 | 157 |
| MS.gene49313.t1 | AT2G27230 | 39.744 | 312 | 157 | 8 | 352 | 659 | 336 | 620 | 6.90e-51 | 187 |
| MS.gene49313.t1 | AT2G27230 | 30.769 | 208 | 114 | 6 | 1 | 190 | 1 | 196 | 9.80e-21 | 97.4 |
| MS.gene49313.t1 | AT2G27230 | 39.744 | 312 | 157 | 8 | 352 | 659 | 336 | 620 | 6.90e-51 | 187 |
| MS.gene49313.t1 | AT2G27230 | 30.769 | 208 | 114 | 6 | 1 | 190 | 1 | 196 | 9.80e-21 | 97.4 |
| MS.gene49313.t1 | AT1G64625 | 46.196 | 184 | 82 | 2 | 476 | 659 | 327 | 493 | 9.72e-46 | 170 |
| MS.gene49313.t1 | AT1G64625 | 33.571 | 140 | 59 | 3 | 1 | 140 | 1 | 106 | 1.82e-14 | 77.0 |
| MS.gene49313.t1 | AT1G64625 | 46.196 | 184 | 82 | 2 | 476 | 659 | 351 | 517 | 1.78e-45 | 170 |
| MS.gene49313.t1 | AT1G64625 | 32.484 | 157 | 62 | 5 | 1 | 140 | 1 | 130 | 8.20e-13 | 72.0 |
| MS.gene49313.t1 | AT1G64625 | 46.196 | 184 | 82 | 2 | 476 | 659 | 341 | 507 | 1.78e-45 | 170 |
| MS.gene49313.t1 | AT1G64625 | 33.333 | 150 | 60 | 4 | 1 | 140 | 1 | 120 | 6.34e-14 | 75.5 |
| MS.gene49313.t1 | AT1G64625 | 56.977 | 86 | 32 | 1 | 476 | 561 | 341 | 421 | 3.18e-24 | 106 |
| MS.gene49313.t1 | AT1G64625 | 33.333 | 150 | 60 | 4 | 1 | 140 | 1 | 120 | 2.25e-14 | 76.3 |
| MS.gene49313.t1 | AT3G15240 | 28.191 | 188 | 85 | 6 | 5 | 155 | 34 | 208 | 6.32e-14 | 74.3 |
| MS.gene49313.t1 | AT5G53900 | 26.009 | 223 | 114 | 8 | 5 | 192 | 21 | 227 | 1.52e-13 | 73.2 |
Find 128 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTCAGCATACTTTATTTA+AGG | 0.129093 | 1.1:-52518824 | None:intergenic |
| TGGGAAGAATCACAATTATC+AGG | 0.237556 | 1.1:-52518321 | None:intergenic |
| TGATGGACTTGTTAAATCTT+TGG | 0.262539 | 1.1:-52519933 | None:intergenic |
| ATCTCGTCCGGAACATCTTT+TGG | 0.269914 | 1.1:+52520180 | MS.gene49313:CDS |
| CTACAATATCATTATTACTA+TGG | 0.303371 | 1.1:-52520225 | None:intergenic |
| TATGTACATTTCTGTTGTTT+TGG | 0.304838 | 1.1:-52522083 | None:intergenic |
| TCTTAGTAGTTGATGCAAAT+TGG | 0.311091 | 1.1:-52517540 | None:intergenic |
| CATCATAGTTTGAGTTTGTC+AGG | 0.324738 | 1.1:+52520391 | MS.gene49313:CDS |
| ATTGGAAGTATGCTATCTTT+TGG | 0.326772 | 1.1:+52517582 | MS.gene49313:CDS |
| CTTCTGCTATCTCAAGAAAA+TGG | 0.337897 | 1.1:-52521779 | None:intergenic |
| AATTTCAAGCCCCTCGTGTT+TGG | 0.340965 | 1.1:-52519714 | None:intergenic |
| GTTGGACAGGTAGCTGTTAC+TGG | 0.341561 | 1.1:+52518556 | MS.gene49313:CDS |
| CTCTGATTATCAACAACAAC+AGG | 0.341637 | 1.1:+52521541 | MS.gene49313:CDS |
| AGCCTTCTGAATTAATATTT+CGG | 0.342951 | 1.1:-52520327 | None:intergenic |
| TCTATTCGTGATCACACATT+AGG | 0.346800 | 1.1:+52519545 | MS.gene49313:CDS |
| TACATAGACTGGACATCTTA+TGG | 0.354256 | 1.1:+52522100 | MS.gene49313:CDS |
| GTGTGTTACGTTTCACGCTT+TGG | 0.365954 | 1.1:-52519586 | None:intergenic |
| GACGGGTGAAACACTTGATA+TGG | 0.366173 | 1.1:+52519619 | MS.gene49313:CDS |
| TCACACATCCTTTCATTTGA+AGG | 0.372706 | 1.1:-52519818 | None:intergenic |
| CAAGATACCTTTGCTCCGTT+TGG | 0.374894 | 1.1:-52520604 | None:intergenic |
| CCGTATCATGTATATTCGTT+AGG | 0.377911 | 1.1:+52518429 | MS.gene49313:CDS |
| AGTTGTCTGTCCCTTGGTCT+AGG | 0.381960 | 1.1:-52520544 | None:intergenic |
| CAGCATGCTTAGTTACGCTT+TGG | 0.384514 | 1.1:-52520787 | None:intergenic |
| TCATGAATGTGTGGTGCTCT+TGG | 0.391843 | 1.1:-52522145 | None:intergenic |
| GCCTTTGTTTGGATACTGAT+TGG | 0.393403 | 1.1:+52517564 | MS.gene49313:CDS |
| ACTGATCCAAGACCGTATTA+AGG | 0.395166 | 1.1:+52520564 | MS.gene49313:CDS |
| ACTACTAAGAAGCCTTTGTT+TGG | 0.398957 | 1.1:+52517553 | MS.gene49313:CDS |
| GTAGAAAATCTTAGTAAGAA+TGG | 0.406604 | 1.1:+52521617 | MS.gene49313:CDS |
| TCATTATGAACAGAAACTTC+AGG | 0.416026 | 1.1:-52520304 | None:intergenic |
| CGTATCATGTATATTCGTTA+GGG | 0.420977 | 1.1:+52518430 | MS.gene49313:CDS |
| TTAACTCCTTAATACGGTCT+TGG | 0.421661 | 1.1:-52520570 | None:intergenic |
| CCACTTGGAGTTGTTCAACT+TGG | 0.421728 | 1.1:+52518799 | MS.gene49313:CDS |
| AGCAGAAGCCGTAAGAAGCT+TGG | 0.422035 | 1.1:+52521794 | MS.gene49313:CDS |
| AACTGCGCAGTTGCATCATA+TGG | 0.422500 | 1.1:+52521499 | MS.gene49313:intron |
| ATTATTACTATGGCAAACTT+TGG | 0.428962 | 1.1:-52520215 | None:intergenic |
| CGTCAGTCCCAAGCTTCTTA+CGG | 0.431906 | 1.1:-52521802 | None:intergenic |
| TGGATCAGTTGTCTGTCCCT+TGG | 0.434072 | 1.1:-52520550 | None:intergenic |
| CTTGAAATTGACAGCGATCA+AGG | 0.439876 | 1.1:+52519728 | MS.gene49313:CDS |
| TAGAAAATCTTAGTAAGAAT+GGG | 0.442335 | 1.1:+52521618 | MS.gene49313:CDS |
| GTTCTGAGAGCACATACTTT+GGG | 0.443847 | 1.1:-52518340 | None:intergenic |
| GACGAGATTCAAAAGTCAAT+TGG | 0.450977 | 1.1:-52520165 | None:intergenic |
| CTAGGCCAGGTGAAAGTTGT+AGG | 0.452487 | 1.1:+52520521 | MS.gene49313:CDS |
| TGTTCTGAGAGCACATACTT+TGG | 0.455292 | 1.1:-52518341 | None:intergenic |
| CGCTTTGGATTTGACTAGGA+AGG | 0.470186 | 1.1:-52519571 | None:intergenic |
| GTTCTCTTAACTCCTTAATA+CGG | 0.473917 | 1.1:-52520576 | None:intergenic |
| GTTCAGAAGACCTCTCAAAC+TGG | 0.474775 | 1.1:-52520474 | None:intergenic |
| CAACAGAAATGTACATAGAC+TGG | 0.476550 | 1.1:+52522089 | MS.gene49313:CDS |
| GCAGAAGCCGTAAGAAGCTT+GGG | 0.478373 | 1.1:+52521795 | MS.gene49313:CDS |
| AGGAAATTTCAATGTGTATG+AGG | 0.478639 | 1.1:-52520017 | None:intergenic |
| CATATGGAAAATGACATTCA+TGG | 0.481714 | 1.1:+52521515 | MS.gene49313:CDS |
| TCCTGTTTCTACAGTATGGT+TGG | 0.484140 | 1.1:+52518538 | MS.gene49313:intron |
| TTTCTACAGTATGGTTGGAC+AGG | 0.486471 | 1.1:+52518543 | MS.gene49313:intron |
| TATTAAGGAGTTAAGAGAAC+TGG | 0.491639 | 1.1:+52520579 | MS.gene49313:CDS |
| AGGATCCTCACCTTAAAAGA+TGG | 0.491951 | 1.1:-52518625 | None:intergenic |
| GTAACGCCCTCCCAATGTCC+TGG | 0.494376 | 1.1:+52519641 | MS.gene49313:CDS |
| ACAACAACAGGGTTCAAGTT+GGG | 0.495964 | 1.1:+52521553 | MS.gene49313:CDS |
| ATGTGTGAAGGGAACAATAA+TGG | 0.497231 | 1.1:+52519833 | MS.gene49313:CDS |
| TACACATTGAAATTTCCTGC+TGG | 0.505845 | 1.1:+52520022 | MS.gene49313:CDS |
| TGACATCGATTGAAGCAAGA+TGG | 0.514120 | 1.1:-52519753 | None:intergenic |
| ATCAAGTGTTTCACCCGTCA+TGG | 0.518290 | 1.1:-52519615 | None:intergenic |
| TTACTCTCTTTGAGAAAACC+TGG | 0.521989 | 1.1:-52520070 | None:intergenic |
| CTGACAAACTCAAACTATGA+TGG | 0.527690 | 1.1:-52520390 | None:intergenic |
| ATGTATATTCGTTAGGGGAA+GGG | 0.529135 | 1.1:+52518436 | MS.gene49313:CDS |
| CCTAACGAATATACATGATA+CGG | 0.532424 | 1.1:-52518429 | None:intergenic |
| ATCATTTCCTACATCAGTGC+AGG | 0.536203 | 1.1:+52520258 | MS.gene49313:CDS |
| GTGCAGTATTGATTCACTGT+TGG | 0.539514 | 1.1:+52520736 | MS.gene49313:intron |
| ACTGCTTCCAAAAGATGTTC+CGG | 0.539659 | 1.1:-52520187 | None:intergenic |
| GGGAAGAATCACAATTATCA+GGG | 0.539821 | 1.1:-52518320 | None:intergenic |
| TAATGATATTGTAGATAATG+AGG | 0.540266 | 1.1:+52520234 | MS.gene49313:CDS |
| ACAGGGTTCAAGTTGGGCAA+TGG | 0.540297 | 1.1:+52521559 | MS.gene49313:CDS |
| ACCTTGGAGCAGATCTATGT+TGG | 0.541880 | 1.1:+52518363 | MS.gene49313:CDS |
| CATGTATATTCGTTAGGGGA+AGG | 0.541965 | 1.1:+52518435 | MS.gene49313:CDS |
| GCAGAGAATACGAAACAAGT+AGG | 0.544022 | 1.1:+52519788 | MS.gene49313:CDS |
| TCAACCATCTCATATTAAAG+AGG | 0.552455 | 1.1:+52520360 | MS.gene49313:CDS |
| AACAACAACAGGGTTCAAGT+TGG | 0.556005 | 1.1:+52521552 | MS.gene49313:CDS |
| ATCATAGTTTGAGTTTGTCA+GGG | 0.556500 | 1.1:+52520392 | MS.gene49313:CDS |
| ATATCCTCTTTAATATGAGA+TGG | 0.557881 | 1.1:-52520364 | None:intergenic |
| TTACATGAAGCACTTGGACC+AGG | 0.559643 | 1.1:+52520052 | MS.gene49313:CDS |
| GACCGAAATATTAATTCAGA+AGG | 0.563885 | 1.1:+52520325 | MS.gene49313:CDS |
| CAAATGAAAGGATGTGTGAA+GGG | 0.564926 | 1.1:+52519822 | MS.gene49313:CDS |
| TCAAGTTGGGCAATGGAGGT+AGG | 0.566298 | 1.1:+52521566 | MS.gene49313:CDS |
| GGATGAAACCTTCAAATGAA+AGG | 0.568936 | 1.1:+52519810 | MS.gene49313:CDS |
| TCAGAAAATGACTATTGATG+TGG | 0.577639 | 1.1:+52519691 | MS.gene49313:CDS |
| TTGCTTGCAGGATCTTGACA+TGG | 0.580291 | 1.1:+52518277 | MS.gene49313:intron |
| TCATGTAACTCATAACCAGC+AGG | 0.580707 | 1.1:-52520037 | None:intergenic |
| CTAGGCCTACAACTTTCACC+TGG | 0.582898 | 1.1:-52520526 | None:intergenic |
| TTCACGCTTTGGATTTGACT+AGG | 0.583058 | 1.1:-52519575 | None:intergenic |
| AACACACAGAAAACCATGAC+GGG | 0.583428 | 1.1:+52519602 | MS.gene49313:CDS |
| GACTGCAATAATTGAACAAG+CGG | 0.583493 | 1.1:-52522123 | None:intergenic |
| GGGTTCAAGTTGGGCAATGG+AGG | 0.584395 | 1.1:+52521562 | MS.gene49313:CDS |
| TCAAATGAAAGGATGTGTGA+AGG | 0.588450 | 1.1:+52519821 | MS.gene49313:CDS |
| TAACGCCCTCCCAATGTCCT+GGG | 0.589847 | 1.1:+52519642 | MS.gene49313:CDS |
| CAGAGAATACGAAACAAGTA+GGG | 0.591572 | 1.1:+52519789 | MS.gene49313:CDS |
| CTGTTGTTGTTGATAATCAG+AGG | 0.593214 | 1.1:-52521540 | None:intergenic |
| TTAAGAGAACTGGTGCCAAA+CGG | 0.593259 | 1.1:+52520589 | MS.gene49313:CDS |
| ATTGTGTCCTGCACTGATGT+AGG | 0.598822 | 1.1:-52520265 | None:intergenic |
| ACTGGTGCCAAACGGAGCAA+AGG | 0.604316 | 1.1:+52520597 | MS.gene49313:CDS |
| TATGAGTTACATGAAGCACT+TGG | 0.610930 | 1.1:+52520046 | MS.gene49313:CDS |
| TATTGATGTGGCCAAACACG+AGG | 0.617153 | 1.1:+52519703 | MS.gene49313:CDS |
| TGCTTGCAGGATCTTGACAT+GGG | 0.618674 | 1.1:+52518278 | MS.gene49313:intron |
| TCCAATCAGTATCCAAACAA+AGG | 0.620757 | 1.1:-52517565 | None:intergenic |
| TTGAGTTTGTCAGGGATCTG+CGG | 0.621537 | 1.1:+52520400 | MS.gene49313:CDS |
| AAAGTTGTAGGCCTAGACCA+AGG | 0.627816 | 1.1:+52520533 | MS.gene49313:CDS |
| TACATCAGTGCAGGACACAA+TGG | 0.629927 | 1.1:+52520267 | MS.gene49313:CDS |
| AATGCAGGTTGGTGAAGACA+TGG | 0.636281 | 1.1:+52519490 | MS.gene49313:intron |
| AACTGGTTACTACACGAGCT+AGG | 0.639086 | 1.1:-52520457 | None:intergenic |
| GAATGGGCAGATGCTTGTTG+AGG | 0.640182 | 1.1:+52521634 | MS.gene49313:CDS |
| GTCGTAGCAGTACTACCACT+TGG | 0.641686 | 1.1:+52518784 | MS.gene49313:CDS |
| CTGTTACTGGAAAACATCAG+TGG | 0.641892 | 1.1:+52518569 | MS.gene49313:CDS |
| TCCAACATAGATCTGCTCCA+AGG | 0.643426 | 1.1:-52518364 | None:intergenic |
| AGTTGGGCAATGGAGGTAGG+AGG | 0.643833 | 1.1:+52521569 | MS.gene49313:CDS |
| CGTGTAGTAACCAGTTTGAG+AGG | 0.651078 | 1.1:+52520464 | MS.gene49313:CDS |
| AAGTTGTAGGCCTAGACCAA+GGG | 0.652681 | 1.1:+52520534 | MS.gene49313:CDS |
| TCGCAACAGATAATCCTAGA+GGG | 0.655424 | 1.1:-52518401 | None:intergenic |
| TTCGCAACAGATAATCCTAG+AGG | 0.664107 | 1.1:-52518402 | None:intergenic |
| TTGCAGGATCTTGACATGGG+AGG | 0.664946 | 1.1:+52518281 | MS.gene49313:intron |
| TAACACACAGAAAACCATGA+CGG | 0.666602 | 1.1:+52519601 | MS.gene49313:CDS |
| TGCAGGTTGGTGAAGACATG+GGG | 0.669819 | 1.1:+52519492 | MS.gene49313:intron |
| ATGCAGGTTGGTGAAGACAT+GGG | 0.672643 | 1.1:+52519491 | MS.gene49313:intron |
| ATTGATGTGGCCAAACACGA+GGG | 0.677054 | 1.1:+52519704 | MS.gene49313:CDS |
| AAACATTTATCATGAATGTG+TGG | 0.685784 | 1.1:-52522154 | None:intergenic |
| CCAAGTTGAACAACTCCAAG+TGG | 0.686515 | 1.1:-52518799 | None:intergenic |
| TTGATGTGGCCAAACACGAG+GGG | 0.694860 | 1.1:+52519705 | MS.gene49313:CDS |
| TATGTGCTCTCAGAACACCT+TGG | 0.696188 | 1.1:+52518347 | MS.gene49313:CDS |
| CATGCTACAGATGCTCTGTG+AGG | 0.715737 | 1.1:+52521749 | MS.gene49313:intron |
| GTATCATGTATATTCGTTAG+GGG | 0.726980 | 1.1:+52518431 | MS.gene49313:CDS |
| TCTGATTATCAACAACAACA+GGG | 0.741738 | 1.1:+52521542 | MS.gene49313:CDS |
| AACGGTGCAAGTGAAGCTCG+TGG | 0.750508 | 1.1:+52521831 | MS.gene49313:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACATTATAAAGAATAA+TGG | - | chr1.1:52518930-52518949 | None:intergenic | 10.0% |
| !! | ATATTTGACATAAAATATAA+AGG | + | chr1.1:52519221-52519240 | MS.gene49313:intron | 10.0% |
| !! | ATTGATGTTTATAAAATTAA+GGG | - | chr1.1:52521326-52521345 | None:intergenic | 10.0% |
| !! | TATTGATGTTTATAAAATTA+AGG | - | chr1.1:52521327-52521346 | None:intergenic | 10.0% |
| !! | AAATTAGGAGATTATATAAA+TGG | - | chr1.1:52519029-52519048 | None:intergenic | 15.0% |
| !! | AAGAAATTTAAGCATTAAAA+GGG | - | chr1.1:52518865-52518884 | None:intergenic | 15.0% |
| !! | AATTAGGAGATTATATAAAT+GGG | - | chr1.1:52519028-52519047 | None:intergenic | 15.0% |
| !! | TTCTTAATTCAATATCTAAA+AGG | - | chr1.1:52517844-52517863 | None:intergenic | 15.0% |
| !! | TTTAGATATTGAATTAAGAA+GGG | + | chr1.1:52517844-52517863 | MS.gene49313:intron | 15.0% |
| !! | TTTATATAATCTCCTAATTT+CGG | + | chr1.1:52519029-52519048 | MS.gene49313:intron | 15.0% |
| !! | TTTGCTTATTATGTATAATA+AGG | - | chr1.1:52519105-52519124 | None:intergenic | 15.0% |
| !!! | AAATGCCATTATTTTATTAT+TGG | - | chr1.1:52520926-52520945 | None:intergenic | 15.0% |
| !!! | AATGCCATTATTTTATTATT+GGG | - | chr1.1:52520925-52520944 | None:intergenic | 15.0% |
| !!! | AATTTTCAAAACATTGTTTT+CGG | - | chr1.1:52521215-52521234 | None:intergenic | 15.0% |
| !!! | TATGTCAAATATATTAGTTT+TGG | - | chr1.1:52519213-52519232 | None:intergenic | 15.0% |
| !!! | TTTTAGATATTGAATTAAGA+AGG | + | chr1.1:52517843-52517862 | MS.gene49313:intron | 15.0% |
| !! | AAACATCAATAAGTATGAAA+TGG | + | chr1.1:52521336-52521355 | MS.gene49313:intron | 20.0% |
| !! | AAACATTATGGAAATTAGAA+AGG | - | chr1.1:52517749-52517768 | None:intergenic | 20.0% |
| !! | ACATATGAAATTTAACTCAT+TGG | - | chr1.1:52518226-52518245 | None:intergenic | 20.0% |
| !! | ATGTAGTTGAATAAATTTGA+CGG | + | chr1.1:52519373-52519392 | MS.gene49313:intron | 20.0% |
| !! | CAAGAAATTTAAGCATTAAA+AGG | - | chr1.1:52518866-52518885 | None:intergenic | 20.0% |
| !! | CATATGAAATTTAACTCATT+GGG | - | chr1.1:52518225-52518244 | None:intergenic | 20.0% |
| !! | CTACAATATCATTATTACTA+TGG | - | chr1.1:52520228-52520247 | None:intergenic | 20.0% |
| !! | TAATGATATTGTAGATAATG+AGG | + | chr1.1:52520234-52520253 | MS.gene49313:CDS | 20.0% |
| !! | TAGAAAATCTTAGTAAGAAT+GGG | + | chr1.1:52521618-52521637 | MS.gene49313:CDS | 20.0% |
| !! | TCTTCCCAATAATAAAATAA+TGG | + | chr1.1:52520918-52520937 | MS.gene49313:intron | 20.0% |
| !!! | AAGAGAGTAAATATTTTGAT+TGG | + | chr1.1:52520083-52520102 | MS.gene49313:CDS | 20.0% |
| !!! | ATTAACATTTTGCTAACAAA+TGG | - | chr1.1:52519444-52519463 | None:intergenic | 20.0% |
| !!! | ATTTTCTAAAACAAAGACAA+AGG | + | chr1.1:52520823-52520842 | MS.gene49313:CDS | 20.0% |
| !!! | CAATTTTAGATTTGGTTTTA+AGG | + | chr1.1:52517888-52517907 | MS.gene49313:intron | 20.0% |
| !!! | CTTATCTTAACATGTTTTAT+TGG | + | chr1.1:52518246-52518265 | MS.gene49313:intron | 20.0% |
| !!! | TAAAGGCATATAATTTTTAG+TGG | + | chr1.1:52519238-52519257 | MS.gene49313:intron | 20.0% |
| !!! | TCAAGAATCAATTTTAGATT+TGG | + | chr1.1:52517880-52517899 | MS.gene49313:intron | 20.0% |
| ! | AGCCTTCTGAATTAATATTT+CGG | - | chr1.1:52520330-52520349 | None:intergenic | 25.0% |
| ! | ATATCCTCTTTAATATGAGA+TGG | - | chr1.1:52520367-52520386 | None:intergenic | 25.0% |
| ! | ATCTAAAAACAGCAAAAAGA+GGG | + | chr1.1:52520498-52520517 | MS.gene49313:CDS | 25.0% |
| ! | ATGAAAATCAGCAAACATTA+TGG | - | chr1.1:52517761-52517780 | None:intergenic | 25.0% |
| ! | ATTATTACTATGGCAAACTT+TGG | - | chr1.1:52520218-52520237 | None:intergenic | 25.0% |
| ! | CGTAAAACTATTATGCATTA+TGG | + | chr1.1:52522007-52522026 | MS.gene49313:intron | 25.0% |
| ! | CTCATTGTAAAATTGTTGTA+GGG | - | chr1.1:52521425-52521444 | None:intergenic | 25.0% |
| ! | CTGATACCAACTAAAAATTT+GGG | - | chr1.1:52518076-52518095 | None:intergenic | 25.0% |
| ! | GTAGAAAATCTTAGTAAGAA+TGG | + | chr1.1:52521617-52521636 | MS.gene49313:CDS | 25.0% |
| ! | TCAGTGAAAATAGAAACAAA+CGG | + | chr1.1:52521299-52521318 | MS.gene49313:intron | 25.0% |
| ! | TCTGATACCAACTAAAAATT+TGG | - | chr1.1:52518077-52518096 | None:intergenic | 25.0% |
| ! | TTTAATCTTAAACTGCATCT+AGG | - | chr1.1:52518488-52518507 | None:intergenic | 25.0% |
| !! | ACATGTAGAAGAAAAACTTT+TGG | - | chr1.1:52520437-52520456 | None:intergenic | 25.0% |
| !! | AGTTAGAGAAAATGCATTTT+TGG | + | chr1.1:52521184-52521203 | MS.gene49313:intron | 25.0% |
| !! | ATACTGAATGAATTTTCAGA+TGG | - | chr1.1:52521595-52521614 | None:intergenic | 25.0% |
| !! | ATGTAGAAGAAAAACTTTTG+GGG | - | chr1.1:52520435-52520454 | None:intergenic | 25.0% |
| !! | CATGTAGAAGAAAAACTTTT+GGG | - | chr1.1:52520436-52520455 | None:intergenic | 25.0% |
| !! | GTTTTTACACAATTCAGTTA+TGG | + | chr1.1:52519898-52519917 | MS.gene49313:CDS | 25.0% |
| !! | TAGTCAGCATACTTTATTTA+AGG | - | chr1.1:52518827-52518846 | None:intergenic | 25.0% |
| !! | TCTAGAAAGAGTATATGTAA+AGG | - | chr1.1:52521683-52521702 | None:intergenic | 25.0% |
| !!! | AATTTCTAGTCCATCTTTTA+AGG | + | chr1.1:52518615-52518634 | MS.gene49313:CDS | 25.0% |
| !!! | ATTACATACATTGATTTGAG+TGG | + | chr1.1:52520975-52520994 | MS.gene49313:intron | 25.0% |
| !!! | GAGTAAATATTTTGATTGGA+CGG | + | chr1.1:52520087-52520106 | MS.gene49313:CDS | 25.0% |
| !!! | TATGTACATTTCTGTTGTTT+TGG | - | chr1.1:52522086-52522105 | None:intergenic | 25.0% |
| AACAATTGTCTGTAAATGCA+AGG | - | chr1.1:52518764-52518783 | None:intergenic | 30.0% | |
| AGGAAATTTCAATGTGTATG+AGG | - | chr1.1:52520020-52520039 | None:intergenic | 30.0% | |
| AGTTGCATCATTGAAGAATA+AGG | - | chr1.1:52518648-52518667 | None:intergenic | 30.0% | |
| ATATTGAATTAAGAAGGGCA+TGG | + | chr1.1:52517849-52517868 | MS.gene49313:intron | 30.0% | |
| ATGTATAATAAGGACTGACA+GGG | - | chr1.1:52519095-52519114 | None:intergenic | 30.0% | |
| CATCTAAAAACAGCAAAAAG+AGG | + | chr1.1:52520497-52520516 | MS.gene49313:CDS | 30.0% | |
| CCTAACGAATATACATGATA+CGG | - | chr1.1:52518432-52518451 | None:intergenic | 30.0% | |
| CCTCATTGTAAAATTGTTGT+AGG | - | chr1.1:52521426-52521445 | None:intergenic | 30.0% | |
| CGTATCATGTATATTCGTTA+GGG | + | chr1.1:52518430-52518449 | MS.gene49313:CDS | 30.0% | |
| CGTCAAAATGAGTTTAGAAA+CGG | + | chr1.1:52518004-52518023 | MS.gene49313:intron | 30.0% | |
| CTTAACTGTGATAGAGAATA+TGG | + | chr1.1:52521156-52521175 | MS.gene49313:intron | 30.0% | |
| GACCGAAATATTAATTCAGA+AGG | + | chr1.1:52520325-52520344 | MS.gene49313:CDS | 30.0% | |
| GTATCATGTATATTCGTTAG+GGG | + | chr1.1:52518431-52518450 | MS.gene49313:CDS | 30.0% | |
| GTCAAAATGAGTTTAGAAAC+GGG | + | chr1.1:52518005-52518024 | MS.gene49313:intron | 30.0% | |
| GTGATAACTAATGTTCATCA+AGG | - | chr1.1:52521061-52521080 | None:intergenic | 30.0% | |
| GTTCTCTTAACTCCTTAATA+CGG | - | chr1.1:52520579-52520598 | None:intergenic | 30.0% | |
| TACCAACTAAAAATTTGGGT+TGG | - | chr1.1:52518072-52518091 | None:intergenic | 30.0% | |
| TAGCATGTAATTATTGTGCT+CGG | + | chr1.1:52519337-52519356 | MS.gene49313:intron | 30.0% | |
| TATGTATAATAAGGACTGAC+AGG | - | chr1.1:52519096-52519115 | None:intergenic | 30.0% | |
| TATTAAGGAGTTAAGAGAAC+TGG | + | chr1.1:52520579-52520598 | MS.gene49313:CDS | 30.0% | |
| TCAAAATGAGTTTAGAAACG+GGG | + | chr1.1:52518006-52518025 | MS.gene49313:intron | 30.0% | |
| TCAACCATCTCATATTAAAG+AGG | + | chr1.1:52520360-52520379 | MS.gene49313:CDS | 30.0% | |
| TCAGAAAATGACTATTGATG+TGG | + | chr1.1:52519691-52519710 | MS.gene49313:CDS | 30.0% | |
| TCATTATGAACAGAAACTTC+AGG | - | chr1.1:52520307-52520326 | None:intergenic | 30.0% | |
| TCCTGTATAGTAAGATTTGA+AGG | + | chr1.1:52518677-52518696 | MS.gene49313:intron | 30.0% | |
| TCTGATTATCAACAACAACA+GGG | + | chr1.1:52521542-52521561 | MS.gene49313:CDS | 30.0% | |
| TTCATGTTATAGAGGTTTCT+TGG | + | chr1.1:52517776-52517795 | MS.gene49313:intron | 30.0% | |
| TTTAAGCATTAAAAGGGACA+AGG | - | chr1.1:52518859-52518878 | None:intergenic | 30.0% | |
| ! | ATCATAGTTTGAGTTTGTCA+GGG | + | chr1.1:52520392-52520411 | MS.gene49313:CDS | 30.0% |
| ! | ATTCATGATAATGAGCGTAA+GGG | - | chr1.1:52521729-52521748 | None:intergenic | 30.0% |
| ! | CCTACAACAATTTTACAATG+AGG | + | chr1.1:52521423-52521442 | MS.gene49313:intron | 30.0% |
| ! | TCTTAGTAGTTGATGCAAAT+TGG | - | chr1.1:52517543-52517562 | None:intergenic | 30.0% |
| ! | TGTAGAAGAAAAACTTTTGG+GGG | - | chr1.1:52520434-52520453 | None:intergenic | 30.0% |
| ! | TGTTCTACAAGCATTTTGTT+TGG | + | chr1.1:52517921-52517940 | MS.gene49313:intron | 30.0% |
| !! | ACATTGATTTGAGTGGAATT+AGG | + | chr1.1:52520982-52521001 | MS.gene49313:intron | 30.0% |
| !! | ATTGGAAGTATGCTATCTTT+TGG | + | chr1.1:52517582-52517601 | MS.gene49313:CDS | 30.0% |
| !! | ATTTTGACGTCATATCTGAT+TGG | - | chr1.1:52517993-52518012 | None:intergenic | 30.0% |
| !! | CTTAACATGTTTTATTGGTG+TGG | + | chr1.1:52518251-52518270 | MS.gene49313:intron | 30.0% |
| !! | CTTGCATTTGTTATGTTGTT+AGG | + | chr1.1:52518183-52518202 | MS.gene49313:intron | 30.0% |
| !! | GTCATTTTCTGATAAACAGT+AGG | - | chr1.1:52519683-52519702 | None:intergenic | 30.0% |
| !! | TGACGGATTGTATAATAGTT+TGG | + | chr1.1:52519390-52519409 | MS.gene49313:intron | 30.0% |
| !! | TGATGGACTTGTTAAATCTT+TGG | - | chr1.1:52519936-52519955 | None:intergenic | 30.0% |
| !! | TGCTTGTTCAATTGCTATTT+AGG | + | chr1.1:52520878-52520897 | MS.gene49313:intron | 30.0% |
| !!! | CTCTTTTTGCTGTTTTTAGA+TGG | - | chr1.1:52520499-52520518 | None:intergenic | 30.0% |
| !!! | TGCTGATTTTCATGTTATAG+AGG | + | chr1.1:52517768-52517787 | MS.gene49313:intron | 30.0% |
| ACCAAGCAATTACCGAAATT+AGG | - | chr1.1:52519044-52519063 | None:intergenic | 35.0% | |
| ACTACTAAGAAGCCTTTGTT+TGG | + | chr1.1:52517553-52517572 | MS.gene49313:CDS | 35.0% | |
| ACTTGTAGTTCCAATTCTTG+TGG | + | chr1.1:52520686-52520705 | MS.gene49313:intron | 35.0% | |
| AGACAAAGGTAACGTCTTAT+TGG | + | chr1.1:52520837-52520856 | MS.gene49313:intron | 35.0% | |
| AGAGCCTATTCAATATCTGT+TGG | + | chr1.1:52518094-52518113 | MS.gene49313:intron | 35.0% | |
| ATGTATATTCGTTAGGGGAA+GGG | + | chr1.1:52518436-52518455 | MS.gene49313:CDS | 35.0% | |
| ATGTGTGAAGGGAACAATAA+TGG | + | chr1.1:52519833-52519852 | MS.gene49313:CDS | 35.0% | |
| CAAATGAAAGGATGTGTGAA+GGG | + | chr1.1:52519822-52519841 | MS.gene49313:CDS | 35.0% | |
| CAACAGAAATGTACATAGAC+TGG | + | chr1.1:52522089-52522108 | MS.gene49313:CDS | 35.0% | |
| CAGAGAATACGAAACAAGTA+GGG | + | chr1.1:52519789-52519808 | MS.gene49313:CDS | 35.0% | |
| CATTTGCTTGTCAACATGTA+AGG | - | chr1.1:52519311-52519330 | None:intergenic | 35.0% | |
| CCGTATCATGTATATTCGTT+AGG | + | chr1.1:52518429-52518448 | MS.gene49313:CDS | 35.0% | |
| CTCTGATTATCAACAACAAC+AGG | + | chr1.1:52521541-52521560 | MS.gene49313:CDS | 35.0% | |
| CTGACAAACTCAAACTATGA+TGG | - | chr1.1:52520393-52520412 | None:intergenic | 35.0% | |
| CTTCTGCTATCTCAAGAAAA+TGG | - | chr1.1:52521782-52521801 | None:intergenic | 35.0% | |
| GACGAGATTCAAAAGTCAAT+TGG | - | chr1.1:52520168-52520187 | None:intergenic | 35.0% | |
| GACTGCAATAATTGAACAAG+CGG | - | chr1.1:52522126-52522145 | None:intergenic | 35.0% | |
| GAGCCTATTCAATATCTGTT+GGG | + | chr1.1:52518095-52518114 | MS.gene49313:intron | 35.0% | |
| GCCTTCAAATCTTACTATAC+AGG | - | chr1.1:52518681-52518700 | None:intergenic | 35.0% | |
| GGATGAAACCTTCAAATGAA+AGG | + | chr1.1:52519810-52519829 | MS.gene49313:CDS | 35.0% | |
| GGGAAGAATCACAATTATCA+GGG | - | chr1.1:52518323-52518342 | None:intergenic | 35.0% | |
| TAACACACAGAAAACCATGA+CGG | + | chr1.1:52519601-52519620 | MS.gene49313:CDS | 35.0% | |
| TAATTTCGGTAATTGCTTGG+TGG | + | chr1.1:52519043-52519062 | MS.gene49313:intron | 35.0% | |
| TACACATTGAAATTTCCTGC+TGG | + | chr1.1:52520022-52520041 | MS.gene49313:CDS | 35.0% | |
| TACATAGACTGGACATCTTA+TGG | + | chr1.1:52522100-52522119 | MS.gene49313:CDS | 35.0% | |
| TACTGTAGAAACAGGACATT+AGG | - | chr1.1:52518534-52518553 | None:intergenic | 35.0% | |
| TCAAATGAAAGGATGTGTGA+AGG | + | chr1.1:52519821-52519840 | MS.gene49313:CDS | 35.0% | |
| TCAATGATGCAACTTGCATT+TGG | + | chr1.1:52518654-52518673 | MS.gene49313:intron | 35.0% | |
| TCACACATCCTTTCATTTGA+AGG | - | chr1.1:52519821-52519840 | None:intergenic | 35.0% | |
| TCCAATCAGTATCCAAACAA+AGG | - | chr1.1:52517568-52517587 | None:intergenic | 35.0% | |
| TCCTAATTTCGGTAATTGCT+TGG | + | chr1.1:52519040-52519059 | MS.gene49313:intron | 35.0% | |
| TCTATTCGTGATCACACATT+AGG | + | chr1.1:52519545-52519564 | MS.gene49313:CDS | 35.0% | |
| TGGGAAGAATCACAATTATC+AGG | - | chr1.1:52518324-52518343 | None:intergenic | 35.0% | |
| TTAACTCCTTAATACGGTCT+TGG | - | chr1.1:52520573-52520592 | None:intergenic | 35.0% | |
| TTAGTTATCACTGAAGCCAA+TGG | + | chr1.1:52521070-52521089 | MS.gene49313:intron | 35.0% | |
| TTATGTCAAGACTTGACATC+TGG | - | chr1.1:52518152-52518171 | None:intergenic | 35.0% | |
| ! | AACGATGAGACATTTTTGTC+TGG | - | chr1.1:52519881-52519900 | None:intergenic | 35.0% |
| ! | AAGATTTGAAGGCGTGTAAT+TGG | + | chr1.1:52518688-52518707 | MS.gene49313:intron | 35.0% |
| ! | CATCATAGTTTGAGTTTGTC+AGG | + | chr1.1:52520391-52520410 | MS.gene49313:CDS | 35.0% |
| ! | GATTCATGATAATGAGCGTA+AGG | - | chr1.1:52521730-52521749 | None:intergenic | 35.0% |
| ! | TATAGAGGTTTCTTGGTGAT+TGG | + | chr1.1:52517783-52517802 | MS.gene49313:intron | 35.0% |
| ! | TATGAGTTACATGAAGCACT+TGG | + | chr1.1:52520046-52520065 | MS.gene49313:CDS | 35.0% |
| ! | TCAGCTTCTACATTTTCTGA+TGG | - | chr1.1:52519953-52519972 | None:intergenic | 35.0% |
| ! | TTACTCTCTTTGAGAAAACC+TGG | - | chr1.1:52520073-52520092 | None:intergenic | 35.0% |
| ! | TTTAAGCTTTGTGAATAGCC+AGG | + | chr1.1:52521033-52521052 | MS.gene49313:intron | 35.0% |
| ! | TTTTCTAATCCTGTCTCAGT+AGG | + | chr1.1:52520640-52520659 | MS.gene49313:intron | 35.0% |
| !! | AATGTCCTGTTTCTACAGTA+TGG | + | chr1.1:52518534-52518553 | MS.gene49313:intron | 35.0% |
| !! | ATTGACTTTTGAATCTCGTC+CGG | + | chr1.1:52520168-52520187 | MS.gene49313:CDS | 35.0% |
| !! | CTGTTGTTGTTGATAATCAG+AGG | - | chr1.1:52521543-52521562 | None:intergenic | 35.0% |
| !!! | ACCTTACAAGTTGGTTTTGT+GGG | + | chr1.1:52518035-52518054 | MS.gene49313:intron | 35.0% |
| !!! | AGGCTTTGGTTTTTTGATAG+CGG | + | chr1.1:52520660-52520679 | MS.gene49313:intron | 35.0% |
| !!! | TATTTTGATTGGACGGTACA+AGG | + | chr1.1:52520094-52520113 | MS.gene49313:CDS | 35.0% |
| AAAACAGCAAAAAGAGGGCT+AGG | + | chr1.1:52520503-52520522 | MS.gene49313:CDS | 40.0% | |
| AAACCTTCAGCCACAAGAAT+TGG | - | chr1.1:52520699-52520718 | None:intergenic | 40.0% | |
| AAATGAAATTCCAGCTACCC+TGG | - | chr1.1:52521122-52521141 | None:intergenic | 40.0% | |
| AACAACAACAGGGTTCAAGT+TGG | + | chr1.1:52521552-52521571 | MS.gene49313:CDS | 40.0% | |
| AACACACAGAAAACCATGAC+GGG | + | chr1.1:52519602-52519621 | MS.gene49313:CDS | 40.0% | |
| AATGAAATTCCAGCTACCCT+GGG | - | chr1.1:52521121-52521140 | None:intergenic | 40.0% | |
| ACTGATCCAAGACCGTATTA+AGG | + | chr1.1:52520564-52520583 | MS.gene49313:CDS | 40.0% | |
| ACTGCTTCCAAAAGATGTTC+CGG | - | chr1.1:52520190-52520209 | None:intergenic | 40.0% | |
| AGGATCCTCACCTTAAAAGA+TGG | - | chr1.1:52518628-52518647 | None:intergenic | 40.0% | |
| AGGGTAGCTGGAATTTCATT+TGG | + | chr1.1:52521121-52521140 | MS.gene49313:intron | 40.0% | |
| ATCATTTCCTACATCAGTGC+AGG | + | chr1.1:52520258-52520277 | MS.gene49313:CDS | 40.0% | |
| ATCGATGAATTGTCTGTCAC+AGG | + | chr1.1:52522059-52522078 | MS.gene49313:intron | 40.0% | |
| CAACGTTGTGCTAGAATGTA+TGG | + | chr1.1:52517611-52517630 | MS.gene49313:intron | 40.0% | |
| CATGTATATTCGTTAGGGGA+AGG | + | chr1.1:52518435-52518454 | MS.gene49313:CDS | 40.0% | |
| CTAATGTTCATCAAGGAACC+TGG | - | chr1.1:52521054-52521073 | None:intergenic | 40.0% | |
| CTGTTACTGGAAAACATCAG+TGG | + | chr1.1:52518569-52518588 | MS.gene49313:CDS | 40.0% | |
| CTTGAAATTGACAGCGATCA+AGG | + | chr1.1:52519728-52519747 | MS.gene49313:CDS | 40.0% | |
| GCAGAGAATACGAAACAAGT+AGG | + | chr1.1:52519788-52519807 | MS.gene49313:CDS | 40.0% | |
| GCATTCACAGATGACAGAAA+AGG | - | chr1.1:52519475-52519494 | None:intergenic | 40.0% | |
| GGTATCCTCGTAAAAAGACT+CGG | - | chr1.1:52519999-52520018 | None:intergenic | 40.0% | |
| TCATGTAACTCATAACCAGC+AGG | - | chr1.1:52520040-52520059 | None:intergenic | 40.0% | |
| TCCAACCATACTGTAGAAAC+AGG | - | chr1.1:52518542-52518561 | None:intergenic | 40.0% | |
| TCGATGAATTGTCTGTCACA+GGG | + | chr1.1:52522060-52522079 | MS.gene49313:intron | 40.0% | |
| TCGCAACAGATAATCCTAGA+GGG | - | chr1.1:52518404-52518423 | None:intergenic | 40.0% | |
| TGGCCCAACAGATATTGAAT+AGG | - | chr1.1:52518101-52518120 | None:intergenic | 40.0% | |
| TGTGAATGTTGTTGCCAATG+CGG | + | chr1.1:52518891-52518910 | MS.gene49313:intron | 40.0% | |
| TTCGCAACAGATAATCCTAG+AGG | - | chr1.1:52518405-52518424 | None:intergenic | 40.0% | |
| TTTCTACAGTATGGTTGGAC+AGG | + | chr1.1:52518543-52518562 | MS.gene49313:intron | 40.0% | |
| TTTCTGTCATCTGTGAATGC+AGG | + | chr1.1:52519475-52519494 | MS.gene49313:intron | 40.0% | |
| ! | AATAGCTTTTCCCAGGACAT+TGG | - | chr1.1:52519655-52519674 | None:intergenic | 40.0% |
| ! | ACAACAACAGGGTTCAAGTT+GGG | + | chr1.1:52521553-52521572 | MS.gene49313:CDS | 40.0% |
| ! | ATAGCTTTTCCCAGGACATT+GGG | - | chr1.1:52519654-52519673 | None:intergenic | 40.0% |
| ! | ATGCATGTGTTTTGTGGTTG+AGG | + | chr1.1:52521863-52521882 | MS.gene49313:CDS | 40.0% |
| ! | ATGTAAGGCTTGGTAAGTCA+GGG | - | chr1.1:52519296-52519315 | None:intergenic | 40.0% |
| ! | ATGTGTTTTGTGGTTGAGGT+AGG | + | chr1.1:52521867-52521886 | MS.gene49313:intron | 40.0% |
| ! | GAAGACATGCATGTGTTTTG+TGG | + | chr1.1:52521857-52521876 | MS.gene49313:CDS | 40.0% |
| ! | GAGTGGAATTAGGCTTTGAT+CGG | + | chr1.1:52520992-52521011 | MS.gene49313:intron | 40.0% |
| ! | GATTCTCTTTTGAACCGCAT+TGG | - | chr1.1:52518908-52518927 | None:intergenic | 40.0% |
| ! | GATTTTTCACATGACCCTCT+AGG | + | chr1.1:52518387-52518406 | MS.gene49313:CDS | 40.0% |
| ! | GCCTTTGTTTGGATACTGAT+TGG | + | chr1.1:52517564-52517583 | MS.gene49313:CDS | 40.0% |
| ! | TGACATCGATTGAAGCAAGA+TGG | - | chr1.1:52519756-52519775 | None:intergenic | 40.0% |
| ! | TTAAGAGAACTGGTGCCAAA+CGG | + | chr1.1:52520589-52520608 | MS.gene49313:CDS | 40.0% |
| ! | TTCACGCTTTGGATTTGACT+AGG | - | chr1.1:52519578-52519597 | None:intergenic | 40.0% |
| ! | TTGGGACTGACGATTTTGAA+CGG | + | chr1.1:52521813-52521832 | MS.gene49313:CDS | 40.0% |
| !! | ACGTCTTATTGGCTTTGAGA+TGG | + | chr1.1:52520848-52520867 | MS.gene49313:intron | 40.0% |
| !! | GTGCAGTATTGATTCACTGT+TGG | + | chr1.1:52520736-52520755 | MS.gene49313:intron | 40.0% |
| !! | GTTCTGAGAGCACATACTTT+GGG | - | chr1.1:52518343-52518362 | None:intergenic | 40.0% |
| !! | TCCTGTTTCTACAGTATGGT+TGG | + | chr1.1:52518538-52518557 | MS.gene49313:intron | 40.0% |
| !! | TGTTCTGAGAGCACATACTT+TGG | - | chr1.1:52518344-52518363 | None:intergenic | 40.0% |
| !!! | CACCTTACAAGTTGGTTTTG+TGG | + | chr1.1:52518034-52518053 | MS.gene49313:intron | 40.0% |
| !!! | CCTTACAAGTTGGTTTTGTG+GGG | + | chr1.1:52518036-52518055 | MS.gene49313:intron | 40.0% |
| !!! | CTAGTCCATCTTTTAAGGTG+AGG | + | chr1.1:52518620-52518639 | MS.gene49313:intron | 40.0% |
| !!! | GGCCAACCCAAATTTTTAGT+TGG | + | chr1.1:52518067-52518086 | MS.gene49313:intron | 40.0% |
| AAACCAAAGCCTACTGAGAC+AGG | - | chr1.1:52520652-52520671 | None:intergenic | 45.0% | |
| AAAGTTGTAGGCCTAGACCA+AGG | + | chr1.1:52520533-52520552 | MS.gene49313:CDS | 45.0% | |
| AACTGCGCAGTTGCATCATA+TGG | + | chr1.1:52521499-52521518 | MS.gene49313:intron | 45.0% | |
| AACTGGTTACTACACGAGCT+AGG | - | chr1.1:52520460-52520479 | None:intergenic | 45.0% | |
| AAGTTGTAGGCCTAGACCAA+GGG | + | chr1.1:52520534-52520553 | MS.gene49313:CDS | 45.0% | |
| AATCCTGTCTCAGTAGGCTT+TGG | + | chr1.1:52520646-52520665 | MS.gene49313:intron | 45.0% | |
| AATTTCAAGCCCCTCGTGTT+TGG | - | chr1.1:52519717-52519736 | None:intergenic | 45.0% | |
| ACCTATGCCATTGTAACCCA+GGG | + | chr1.1:52521102-52521121 | MS.gene49313:intron | 45.0% | |
| ACCTTGGAGCAGATCTATGT+TGG | + | chr1.1:52518363-52518382 | MS.gene49313:CDS | 45.0% | |
| ATCAAGTGTTTCACCCGTCA+TGG | - | chr1.1:52519618-52519637 | None:intergenic | 45.0% | |
| ATTGATGTGGCCAAACACGA+GGG | + | chr1.1:52519704-52519723 | MS.gene49313:CDS | 45.0% | |
| CAAGATACCTTTGCTCCGTT+TGG | - | chr1.1:52520607-52520626 | None:intergenic | 45.0% | |
| CAGCATGCTTAGTTACGCTT+TGG | - | chr1.1:52520790-52520809 | None:intergenic | 45.0% | |
| CCACTTGGAGTTGTTCAACT+TGG | + | chr1.1:52518799-52518818 | MS.gene49313:CDS | 45.0% | |
| CCCCACAAAACCAACTTGTA+AGG | - | chr1.1:52518039-52518058 | None:intergenic | 45.0% | |
| CGTGTAGTAACCAGTTTGAG+AGG | + | chr1.1:52520464-52520483 | MS.gene49313:CDS | 45.0% | |
| GACGGGTGAAACACTTGATA+TGG | + | chr1.1:52519619-52519638 | MS.gene49313:CDS | 45.0% | |
| GCTTGTCAACATGTAAGGCT+TGG | - | chr1.1:52519306-52519325 | None:intergenic | 45.0% | |
| GTCAAGACTTGACATCTGGA+GGG | - | chr1.1:52518148-52518167 | None:intergenic | 45.0% | |
| GTGTGTTACGTTTCACGCTT+TGG | - | chr1.1:52519589-52519608 | None:intergenic | 45.0% | |
| GTTACAATGGCATAGGTGTG+AGG | - | chr1.1:52521099-52521118 | None:intergenic | 45.0% | |
| GTTCAGAAGACCTCTCAAAC+TGG | - | chr1.1:52520477-52520496 | None:intergenic | 45.0% | |
| GTTCCAATTCTTGTGGCTGA+AGG | + | chr1.1:52520693-52520712 | MS.gene49313:intron | 45.0% | |
| TACATCAGTGCAGGACACAA+TGG | + | chr1.1:52520267-52520286 | MS.gene49313:CDS | 45.0% | |
| TATGTGCTCTCAGAACACCT+TGG | + | chr1.1:52518347-52518366 | MS.gene49313:CDS | 45.0% | |
| TATTGATGTGGCCAAACACG+AGG | + | chr1.1:52519703-52519722 | MS.gene49313:CDS | 45.0% | |
| TCATGAATGTGTGGTGCTCT+TGG | - | chr1.1:52522148-52522167 | None:intergenic | 45.0% | |
| TCCAACATAGATCTGCTCCA+AGG | - | chr1.1:52518367-52518386 | None:intergenic | 45.0% | |
| TGCTTGCAGGATCTTGACAT+GGG | + | chr1.1:52518278-52518297 | MS.gene49313:intron | 45.0% | |
| TGTCAAGACTTGACATCTGG+AGG | - | chr1.1:52518149-52518168 | None:intergenic | 45.0% | |
| TGTCATCTGTGAATGCAGGT+TGG | + | chr1.1:52519479-52519498 | MS.gene49313:intron | 45.0% | |
| TTGAGTTTGTCAGGGATCTG+CGG | + | chr1.1:52520400-52520419 | MS.gene49313:CDS | 45.0% | |
| TTGCTTGCAGGATCTTGACA+TGG | + | chr1.1:52518277-52518296 | MS.gene49313:intron | 45.0% | |
| ! | ATCTCGTCCGGAACATCTTT+TGG | + | chr1.1:52520180-52520199 | MS.gene49313:CDS | 45.0% |
| ! | ATTGTGTCCTGCACTGATGT+AGG | - | chr1.1:52520268-52520287 | None:intergenic | 45.0% |
| ! | CATAGGTGTGAGGTATCCAT+TGG | - | chr1.1:52521089-52521108 | None:intergenic | 45.0% |
| ! | CATGTAAGGCTTGGTAAGTC+AGG | - | chr1.1:52519297-52519316 | None:intergenic | 45.0% |
| ! | CCAAGTTGAACAACTCCAAG+TGG | - | chr1.1:52518802-52518821 | None:intergenic | 45.0% |
| ! | CGCTTTGGATTTGACTAGGA+AGG | - | chr1.1:52519574-52519593 | None:intergenic | 45.0% |
| ! | GGAGATGAATAGCTTTTCCC+AGG | - | chr1.1:52519662-52519681 | None:intergenic | 45.0% |
| ! | TCAGACCGAGTCTTTTTACG+AGG | + | chr1.1:52519991-52520010 | MS.gene49313:CDS | 45.0% |
| ! | TTACATGAAGCACTTGGACC+AGG | + | chr1.1:52520052-52520071 | MS.gene49313:CDS | 45.0% |
| !! | AATGCAGGTTGGTGAAGACA+TGG | + | chr1.1:52519490-52519509 | MS.gene49313:intron | 45.0% |
| !! | ATGCAGGTTGGTGAAGACAT+GGG | + | chr1.1:52519491-52519510 | MS.gene49313:intron | 45.0% |
| !! | CTTGGTGGTGATTGAAGCAT+TGG | + | chr1.1:52519058-52519077 | MS.gene49313:intron | 45.0% |
| !! | GGAACATCTTTTGGAAGCAG+TGG | + | chr1.1:52520189-52520208 | MS.gene49313:CDS | 45.0% |
| !!! | TGGTTTTGTGGGGTTGAGTT+AGG | + | chr1.1:52518046-52518065 | MS.gene49313:intron | 45.0% |
| ACCCTGGGTTACAATGGCAT+AGG | - | chr1.1:52521106-52521125 | None:intergenic | 50.0% | |
| AGCAGAAGCCGTAAGAAGCT+TGG | + | chr1.1:52521794-52521813 | MS.gene49313:CDS | 50.0% | |
| AGTTGTCTGTCCCTTGGTCT+AGG | - | chr1.1:52520547-52520566 | None:intergenic | 50.0% | |
| CACCTATGCCATTGTAACCC+AGG | + | chr1.1:52521101-52521120 | MS.gene49313:intron | 50.0% | |
| CACCTGCTATCAGATCACCT+GGG | + | chr1.1:52518119-52518138 | MS.gene49313:intron | 50.0% | |
| CATGCTACAGATGCTCTGTG+AGG | + | chr1.1:52521749-52521768 | MS.gene49313:intron | 50.0% | |
| CGTCAGTCCCAAGCTTCTTA+CGG | - | chr1.1:52521805-52521824 | None:intergenic | 50.0% | |
| CTAGGCCAGGTGAAAGTTGT+AGG | + | chr1.1:52520521-52520540 | MS.gene49313:CDS | 50.0% | |
| CTAGGCCTACAACTTTCACC+TGG | - | chr1.1:52520529-52520548 | None:intergenic | 50.0% | |
| GCAGAAGCCGTAAGAAGCTT+GGG | + | chr1.1:52521795-52521814 | MS.gene49313:CDS | 50.0% | |
| GGGTGTCTCACCTTACAAGT+TGG | + | chr1.1:52518026-52518045 | MS.gene49313:intron | 50.0% | |
| GTCGTAGCAGTACTACCACT+TGG | + | chr1.1:52518784-52518803 | MS.gene49313:CDS | 50.0% | |
| GTTGGACAGGTAGCTGTTAC+TGG | + | chr1.1:52518556-52518575 | MS.gene49313:CDS | 50.0% | |
| TGATGCAACTGCGCAGTTGT+AGG | - | chr1.1:52521497-52521516 | None:intergenic | 50.0% | |
| TGGATCAGTTGTCTGTCCCT+TGG | - | chr1.1:52520553-52520572 | None:intergenic | 50.0% | |
| TTGATGTGGCCAAACACGAG+GGG | + | chr1.1:52519705-52519724 | MS.gene49313:CDS | 50.0% | |
| TTGCAGGATCTTGACATGGG+AGG | + | chr1.1:52518281-52518300 | MS.gene49313:intron | 50.0% | |
| TTGGTGTGGCAATTGCTTGC+AGG | + | chr1.1:52518265-52518284 | MS.gene49313:intron | 50.0% | |
| ! | CTTTTCCCAGGACATTGGGA+GGG | - | chr1.1:52519650-52519669 | None:intergenic | 50.0% |
| ! | GAATGGGCAGATGCTTGTTG+AGG | + | chr1.1:52521634-52521653 | MS.gene49313:CDS | 50.0% |
| !! | ACAGGGTTCAAGTTGGGCAA+TGG | + | chr1.1:52521559-52521578 | MS.gene49313:CDS | 50.0% |
| !! | TCAAGTTGGGCAATGGAGGT+AGG | + | chr1.1:52521566-52521585 | MS.gene49313:CDS | 50.0% |
| !! | TGCAGGTTGGTGAAGACATG+GGG | + | chr1.1:52519492-52519511 | MS.gene49313:intron | 50.0% |
| AACGGTGCAAGTGAAGCTCG+TGG | + | chr1.1:52521831-52521850 | MS.gene49313:CDS | 55.0% | |
| AGCAAAAAGAGGGCTAGGCC+AGG | + | chr1.1:52520508-52520527 | MS.gene49313:CDS | 55.0% | |
| AGTTGGGCAATGGAGGTAGG+AGG | + | chr1.1:52521569-52521588 | MS.gene49313:CDS | 55.0% | |
| CCACCTGCTATCAGATCACC+TGG | + | chr1.1:52518118-52518137 | MS.gene49313:intron | 55.0% | |
| CCAGCTACCCTGGGTTACAA+TGG | - | chr1.1:52521112-52521131 | None:intergenic | 55.0% | |
| CCAGGTGATCTGATAGCAGG+TGG | - | chr1.1:52518121-52518140 | None:intergenic | 55.0% | |
| CCATTGTAACCCAGGGTAGC+TGG | + | chr1.1:52521109-52521128 | MS.gene49313:intron | 55.0% | |
| GACCCAGGTGATCTGATAGC+AGG | - | chr1.1:52518124-52518143 | None:intergenic | 55.0% | |
| TAACGCCCTCCCAATGTCCT+GGG | + | chr1.1:52519642-52519661 | MS.gene49313:CDS | 55.0% | |
| ! | ACTGGTGCCAAACGGAGCAA+AGG | + | chr1.1:52520597-52520616 | MS.gene49313:CDS | 55.0% |
| ! | GCTTTTCCCAGGACATTGGG+AGG | - | chr1.1:52519651-52519670 | None:intergenic | 55.0% |
| !! | GGGTTCAAGTTGGGCAATGG+AGG | + | chr1.1:52521562-52521581 | MS.gene49313:CDS | 55.0% |
| GTAACGCCCTCCCAATGTCC+TGG | + | chr1.1:52519641-52519660 | MS.gene49313:CDS | 60.0% | |
| TGACATCTGGAGGGTGACCC+AGG | - | chr1.1:52518139-52518158 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 52517533 | 52522167 | 52517533 | ID=MS.gene49313 |
| chr1.1 | mRNA | 52517533 | 52522167 | 52517533 | ID=MS.gene49313.t1;Parent=MS.gene49313 |
| chr1.1 | exon | 52517533 | 52517627 | 52517533 | ID=MS.gene49313.t1.exon1;Parent=MS.gene49313.t1 |
| chr1.1 | CDS | 52517533 | 52517627 | 52517533 | ID=cds.MS.gene49313.t1;Parent=MS.gene49313.t1 |
| chr1.1 | exon | 52518287 | 52518457 | 52518287 | ID=MS.gene49313.t1.exon2;Parent=MS.gene49313.t1 |
| chr1.1 | CDS | 52518287 | 52518457 | 52518287 | ID=cds.MS.gene49313.t1;Parent=MS.gene49313.t1 |
| chr1.1 | exon | 52518552 | 52518636 | 52518552 | ID=MS.gene49313.t1.exon3;Parent=MS.gene49313.t1 |
| chr1.1 | CDS | 52518552 | 52518636 | 52518552 | ID=cds.MS.gene49313.t1;Parent=MS.gene49313.t1 |
| chr1.1 | exon | 52518775 | 52518834 | 52518775 | ID=MS.gene49313.t1.exon4;Parent=MS.gene49313.t1 |
| chr1.1 | CDS | 52518775 | 52518834 | 52518775 | ID=cds.MS.gene49313.t1;Parent=MS.gene49313.t1 |
| chr1.1 | exon | 52519497 | 52520618 | 52519497 | ID=MS.gene49313.t1.exon5;Parent=MS.gene49313.t1 |
| chr1.1 | CDS | 52519497 | 52520618 | 52519497 | ID=cds.MS.gene49313.t1;Parent=MS.gene49313.t1 |
| chr1.1 | exon | 52520737 | 52520844 | 52520737 | ID=MS.gene49313.t1.exon6;Parent=MS.gene49313.t1 |
| chr1.1 | CDS | 52520737 | 52520844 | 52520737 | ID=cds.MS.gene49313.t1;Parent=MS.gene49313.t1 |
| chr1.1 | exon | 52521509 | 52521655 | 52521509 | ID=MS.gene49313.t1.exon7;Parent=MS.gene49313.t1 |
| chr1.1 | CDS | 52521509 | 52521655 | 52521509 | ID=cds.MS.gene49313.t1;Parent=MS.gene49313.t1 |
| chr1.1 | exon | 52521759 | 52521884 | 52521759 | ID=MS.gene49313.t1.exon8;Parent=MS.gene49313.t1 |
| chr1.1 | CDS | 52521759 | 52521884 | 52521759 | ID=cds.MS.gene49313.t1;Parent=MS.gene49313.t1 |
| chr1.1 | exon | 52522081 | 52522167 | 52522081 | ID=MS.gene49313.t1.exon9;Parent=MS.gene49313.t1 |
| chr1.1 | CDS | 52522081 | 52522167 | 52522081 | ID=cds.MS.gene49313.t1;Parent=MS.gene49313.t1 |
| Gene Sequence |
| Protein sequence |
