Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50873.t1 | XP_013459058.1 | 93.8 | 514 | 28 | 1 | 1 | 510 | 1 | 514 | 6.60E-262 | 912.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50873.t1 | Q9LDD4 | 40.3 | 191 | 93 | 6 | 141 | 326 | 370 | 544 | 1.4e-26 | 122.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50873.t1 | A0A072UUQ4 | 93.8 | 514 | 28 | 1 | 1 | 510 | 1 | 514 | 4.7e-262 | 912.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050359 | MS.gene50873 | 0.810659 | 1.03E-50 | -1.69E-46 |
| MS.gene058638 | MS.gene50873 | 0.805233 | 1.47E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene50873 | 0.800523 | 1.38E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50873 | MS.gene057919 | PPI |
| MS.gene51814 | MS.gene50873 | PPI |
| MS.gene50873 | MS.gene95204 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50873.t1 | MTR_3g023780 | 95.136 | 514 | 21 | 1 | 1 | 510 | 1 | 514 | 0.0 | 984 |
| MS.gene50873.t1 | MTR_7g078120 | 38.624 | 189 | 103 | 4 | 136 | 322 | 378 | 555 | 3.15e-31 | 127 |
| MS.gene50873.t1 | MTR_7g078120 | 38.624 | 189 | 103 | 4 | 136 | 322 | 378 | 555 | 5.58e-31 | 127 |
| MS.gene50873.t1 | MTR_8g098645 | 39.560 | 182 | 97 | 5 | 143 | 322 | 141 | 311 | 6.71e-26 | 108 |
| MS.gene50873.t1 | MTR_1g073380 | 37.688 | 199 | 107 | 5 | 128 | 322 | 378 | 563 | 1.32e-25 | 110 |
| MS.gene50873.t1 | MTR_8g098635 | 35.938 | 192 | 108 | 6 | 135 | 322 | 82 | 262 | 1.83e-25 | 106 |
| MS.gene50873.t1 | MTR_1g073530 | 37.912 | 182 | 96 | 5 | 145 | 322 | 385 | 553 | 7.55e-25 | 108 |
| MS.gene50873.t1 | MTR_1g073590 | 37.912 | 182 | 96 | 5 | 145 | 322 | 382 | 550 | 8.10e-25 | 108 |
| MS.gene50873.t1 | MTR_8g098605 | 38.462 | 182 | 99 | 5 | 143 | 322 | 391 | 561 | 8.62e-25 | 108 |
| MS.gene50873.t1 | MTR_8g098635 | 35.938 | 192 | 108 | 6 | 135 | 322 | 165 | 345 | 9.64e-25 | 106 |
| MS.gene50873.t1 | MTR_8g028905 | 35.326 | 184 | 102 | 7 | 145 | 322 | 408 | 580 | 2.46e-22 | 100 |
| MS.gene50873.t1 | MTR_7g066890 | 32.778 | 180 | 114 | 5 | 139 | 317 | 188 | 361 | 1.04e-18 | 88.2 |
| MS.gene50873.t1 | MTR_7g066890 | 32.778 | 180 | 114 | 5 | 139 | 317 | 290 | 463 | 2.75e-18 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50873.t1 | AT1G13880 | 37.293 | 362 | 207 | 8 | 1 | 362 | 1 | 342 | 1.82e-64 | 215 |
| MS.gene50873.t1 | AT1G13880 | 37.293 | 362 | 207 | 8 | 1 | 362 | 11 | 352 | 2.40e-64 | 215 |
| MS.gene50873.t1 | AT1G13880 | 37.017 | 362 | 209 | 8 | 1 | 362 | 1 | 343 | 3.26e-64 | 215 |
| MS.gene50873.t1 | AT1G26580 | 44.223 | 251 | 128 | 5 | 110 | 348 | 33 | 283 | 6.73e-62 | 209 |
| MS.gene50873.t1 | AT1G26580 | 36.944 | 360 | 204 | 7 | 1 | 348 | 1 | 349 | 1.13e-61 | 210 |
| MS.gene50873.t1 | AT1G26580 | 36.944 | 360 | 204 | 7 | 1 | 348 | 1 | 349 | 1.13e-61 | 210 |
| MS.gene50873.t1 | AT2G03470 | 48.718 | 195 | 96 | 1 | 130 | 324 | 107 | 297 | 1.44e-59 | 203 |
| MS.gene50873.t1 | AT2G03470 | 48.718 | 195 | 96 | 1 | 130 | 324 | 108 | 298 | 1.47e-59 | 203 |
| MS.gene50873.t1 | AT4G11400 | 40.314 | 191 | 93 | 6 | 141 | 326 | 370 | 544 | 2.99e-29 | 121 |
| MS.gene50873.t1 | AT4G11400 | 40.314 | 191 | 93 | 6 | 141 | 326 | 370 | 544 | 2.99e-29 | 121 |
| MS.gene50873.t1 | AT5G04110 | 31.868 | 182 | 115 | 4 | 142 | 321 | 358 | 532 | 5.06e-23 | 102 |
| MS.gene50873.t1 | AT5G04110 | 31.868 | 182 | 115 | 4 | 142 | 321 | 358 | 532 | 5.06e-23 | 102 |
| MS.gene50873.t1 | AT5G04110 | 31.868 | 182 | 115 | 4 | 142 | 321 | 359 | 533 | 5.18e-23 | 102 |
| MS.gene50873.t1 | AT2G46040 | 35.165 | 182 | 99 | 6 | 147 | 322 | 362 | 530 | 1.91e-16 | 82.8 |
| MS.gene50873.t1 | AT2G46040 | 35.165 | 182 | 99 | 6 | 147 | 322 | 362 | 530 | 1.91e-16 | 82.8 |
| MS.gene50873.t1 | AT2G46040 | 35.165 | 182 | 99 | 6 | 147 | 322 | 376 | 544 | 2.00e-16 | 82.8 |
| MS.gene50873.t1 | AT5G04110 | 30.405 | 148 | 100 | 3 | 142 | 287 | 358 | 504 | 7.70e-15 | 77.4 |
Find 131 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTGGGACCTGCATGTTTC+GGG | 0.207717 | 3.1:+14280319 | None:intergenic |
| TAGGTATTCCTGCTTCTTCT+TGG | 0.222856 | 3.1:-14280018 | MS.gene50873:CDS |
| ACTGAAGTACTCATGGAAAA+AGG | 0.244769 | 3.1:+14279940 | None:intergenic |
| CATCCCTCAACAAGAATTTC+TGG | 0.247523 | 3.1:-14279442 | MS.gene50873:CDS |
| ATTGAGAAATTTATTGAATT+GGG | 0.262064 | 3.1:-14279551 | MS.gene50873:CDS |
| CTCATGAGTTAATGTCCTTA+TGG | 0.270357 | 3.1:+14279883 | None:intergenic |
| CTGAAATATATTGGCCGTTC+TGG | 0.274949 | 3.1:+14279917 | None:intergenic |
| TATCACTATCAGCACTTAAT+AGG | 0.298492 | 3.1:+14279315 | None:intergenic |
| TCGCTGGGACCTGCATGTTT+CGG | 0.298552 | 3.1:+14280318 | None:intergenic |
| GATGAAAATTGTGATGTTAA+TGG | 0.303115 | 3.1:-14279137 | MS.gene50873:CDS |
| CATCCCAAACATGTTGGTCC+TGG | 0.308074 | 3.1:+14279018 | None:intergenic |
| CAGATTCAAACCTCAATGTT+TGG | 0.315295 | 3.1:-14279763 | MS.gene50873:CDS |
| GATTGAGAAATTTATTGAAT+TGG | 0.318877 | 3.1:-14279552 | MS.gene50873:CDS |
| ACAAGTATCATCTTCATAGA+TGG | 0.329130 | 3.1:+14279217 | None:intergenic |
| TTTATTGAATTGGGGTTTGC+TGG | 0.329459 | 3.1:-14279542 | MS.gene50873:CDS |
| AAGCCCAGGACCAACATGTT+TGG | 0.344788 | 3.1:-14279022 | MS.gene50873:CDS |
| AGGTATTCCTGCTTCTTCTT+GGG | 0.365719 | 3.1:-14280017 | MS.gene50873:CDS |
| AGCCCAGGACCAACATGTTT+GGG | 0.368080 | 3.1:-14279021 | MS.gene50873:CDS |
| TGAATTGGGGTTTGCTGGCA+TGG | 0.372651 | 3.1:-14279537 | MS.gene50873:CDS |
| AGGAGAATGTTCAAGGAGTA+TGG | 0.375340 | 3.1:+14279850 | None:intergenic |
| CGTTCTGGACTGAAATATAT+TGG | 0.377694 | 3.1:+14279908 | None:intergenic |
| CCGCAATGATGATCACTTAG+AGG | 0.384163 | 3.1:-14279183 | MS.gene50873:CDS |
| AGATTCAAACCTCAATGTTT+GGG | 0.386204 | 3.1:-14279762 | MS.gene50873:CDS |
| AAATTCTTGTTGAGGGATGC+TGG | 0.410628 | 3.1:+14279446 | None:intergenic |
| GATGCACCAGGTTGGGATCC+TGG | 0.411032 | 3.1:-14278843 | MS.gene50873:CDS |
| GAAAGCGAGCTGAGCAGAAC+AGG | 0.411275 | 3.1:-14279343 | MS.gene50873:CDS |
| CACCTGAAGTCTTAGCCAAA+TGG | 0.412401 | 3.1:+14280247 | None:intergenic |
| ATGTGTAAGACAACATATAA+TGG | 0.417704 | 3.1:-14279606 | MS.gene50873:CDS |
| TGGGGCAGTAACTATAATAA+TGG | 0.418652 | 3.1:-14278909 | MS.gene50873:CDS |
| TCATGAGTTAATGTCCTTAT+GGG | 0.424228 | 3.1:+14279884 | None:intergenic |
| AATGTCCTTATGGGTCGTTC+TGG | 0.428131 | 3.1:+14279893 | None:intergenic |
| ATCCCAAACATGTTGGTCCT+GGG | 0.430334 | 3.1:+14279019 | None:intergenic |
| ATCATCTTCGGTAGTGCAAC+TGG | 0.442795 | 3.1:+14279991 | None:intergenic |
| TTCTGAACGGTGATCATCTT+CGG | 0.442890 | 3.1:+14279979 | None:intergenic |
| ACCCATTTGGCTAAGACTTC+AGG | 0.445192 | 3.1:-14280249 | MS.gene50873:intron |
| TCTAGCCTTGATGATGAAGT+TGG | 0.445677 | 3.1:-14279674 | MS.gene50873:CDS |
| GATGGACATCCTAGAGGGGC+TGG | 0.449911 | 3.1:-14280043 | MS.gene50873:CDS |
| TGATCAGCTCCAACTGATAC+AGG | 0.454985 | 3.1:+14279821 | None:intergenic |
| CCCTCATCTGATTCAAGCCC+AGG | 0.459996 | 3.1:-14279036 | MS.gene50873:CDS |
| GTTCCAGAAATTCTTGTTGA+GGG | 0.466806 | 3.1:+14279439 | None:intergenic |
| CTTGATGATGAAGTTGGAAA+AGG | 0.469243 | 3.1:-14279668 | MS.gene50873:CDS |
| CATCCTAGAGGGGCTGGGAT+AGG | 0.472410 | 3.1:-14280037 | MS.gene50873:CDS |
| AGGCTAGATAATTCCATCTC+AGG | 0.474272 | 3.1:+14279689 | None:intergenic |
| ACCTGAAGTCTTAGCCAAAT+GGG | 0.476227 | 3.1:+14280248 | None:intergenic |
| ATCTTGCTCTAAAAGTAAGA+TGG | 0.482487 | 3.1:-14278814 | MS.gene50873:CDS |
| AGCATCTCCTCAGCATCAAA+AGG | 0.482810 | 3.1:+14280360 | None:intergenic |
| AGGGAGACCAAGGTGAAGAA+TGG | 0.483816 | 3.1:-14278945 | MS.gene50873:CDS |
| TGATGATTGCGACACCCATT+TGG | 0.484841 | 3.1:-14280262 | MS.gene50873:CDS |
| AGATAAAGGTAGATAATCGC+TGG | 0.489959 | 3.1:+14280302 | None:intergenic |
| CAGAATCCTCATCTTCCTCA+TGG | 0.490672 | 3.1:+14279252 | None:intergenic |
| ATCACCATCAATGTTCCTCT+TGG | 0.496474 | 3.1:+14279100 | None:intergenic |
| CATCCCCATCCCAAACATTG+AGG | 0.498295 | 3.1:+14279753 | None:intergenic |
| CAAACCTCAATGTTTGGGAT+GGG | 0.499908 | 3.1:-14279757 | MS.gene50873:CDS |
| CTTGATATGCATCACTCTAG+TGG | 0.500136 | 3.1:-14279062 | MS.gene50873:CDS |
| ACTATTCCCATTCTTCACCT+TGG | 0.500719 | 3.1:+14278938 | None:intergenic |
| CAGACCAAGAGGAACATTGA+TGG | 0.503584 | 3.1:-14279104 | MS.gene50873:CDS |
| TGGGTGTCGCAATCATCATC+AGG | 0.505398 | 3.1:+14280267 | None:intergenic |
| CAATAAATTTCTCAATCCCA+AGG | 0.506179 | 3.1:+14279558 | None:intergenic |
| ATGACATGGGAGTTGCTTCA+AGG | 0.507286 | 3.1:-14278965 | MS.gene50873:CDS |
| TCAAGCTGATGTTCCTGCAT+GGG | 0.508514 | 3.1:-14279798 | MS.gene50873:CDS |
| TTGAGAAATTTATTGAATTG+GGG | 0.509311 | 3.1:-14279550 | MS.gene50873:CDS |
| GAATTGGGGTTTGCTGGCAT+GGG | 0.510950 | 3.1:-14279536 | MS.gene50873:CDS |
| GCATTGTGATGCACCAGGTT+GGG | 0.518658 | 3.1:-14278850 | MS.gene50873:CDS |
| GATAATTCCATCTCAGGCAT+AGG | 0.519691 | 3.1:+14279695 | None:intergenic |
| CAAGTATCATCTTCATAGAT+GGG | 0.519904 | 3.1:+14279218 | None:intergenic |
| GGGAGACCAAGGTGAAGAAT+GGG | 0.522083 | 3.1:-14278944 | MS.gene50873:CDS |
| TCAAACCTCAATGTTTGGGA+TGG | 0.524692 | 3.1:-14279758 | MS.gene50873:CDS |
| TTAGAGCAAGATACAAAGCC+AGG | 0.525570 | 3.1:+14278825 | None:intergenic |
| TGATGCTGAGGAGATGCTTG+AGG | 0.526167 | 3.1:-14280355 | MS.gene50873:CDS |
| CCCTCTAGGATGTCCATCAC+AGG | 0.527463 | 3.1:+14280048 | None:intergenic |
| GAATGGGAATAGTGATCAGT+GGG | 0.528104 | 3.1:-14278928 | MS.gene50873:CDS |
| CCTCGCAAGCCTGTATCAGT+TGG | 0.530589 | 3.1:-14279830 | MS.gene50873:CDS |
| TGACATGGGAGTTGCTTCAA+GGG | 0.532666 | 3.1:-14278964 | MS.gene50873:CDS |
| ATACCTATCCCAGCCCCTCT+AGG | 0.533332 | 3.1:+14280034 | None:intergenic |
| CCCATGTCATGTGATGTGTA+TGG | 0.535319 | 3.1:+14278978 | None:intergenic |
| CAAGCTGATGTTCCTGCATG+GGG | 0.538451 | 3.1:-14279797 | MS.gene50873:CDS |
| TATTATCCCTATGCCTGAGA+TGG | 0.538511 | 3.1:-14279702 | MS.gene50873:CDS |
| CTCAGGCATAGGGATAATAC+AGG | 0.539552 | 3.1:+14279706 | None:intergenic |
| ATAATTCCATCTCAGGCATA+GGG | 0.542120 | 3.1:+14279696 | None:intergenic |
| AAACCTCAATGTTTGGGATG+GGG | 0.542867 | 3.1:-14279756 | MS.gene50873:CDS |
| AATGCTCCATCACATATCCT+TGG | 0.544054 | 3.1:+14278868 | None:intergenic |
| ATGGACATCCTAGAGGGGCT+GGG | 0.545456 | 3.1:-14280042 | MS.gene50873:CDS |
| GAGAACAAGTGGCTCAAAAG+TGG | 0.552554 | 3.1:-14279514 | MS.gene50873:CDS |
| GCTTGCGAGGAGAATGTTCA+AGG | 0.553211 | 3.1:+14279843 | None:intergenic |
| TCAGTCCAGAACGACCCATA+AGG | 0.556681 | 3.1:-14279898 | MS.gene50873:CDS |
| AGTTCCAGAAATTCTTGTTG+AGG | 0.557435 | 3.1:+14279438 | None:intergenic |
| ATCAAGCTGATGTTCCTGCA+TGG | 0.557524 | 3.1:-14279799 | MS.gene50873:CDS |
| GTTCTGGACTGAAGTACTCA+TGG | 0.558958 | 3.1:+14279933 | None:intergenic |
| TTCAAACACCCGAAACATGC+AGG | 0.560228 | 3.1:-14280327 | MS.gene50873:CDS |
| AATAAATTTCTCAATCCCAA+GGG | 0.560869 | 3.1:+14279559 | None:intergenic |
| GTTCAAGGAGTATGGAATAG+AGG | 0.561760 | 3.1:+14279858 | None:intergenic |
| TATAATAATGGAGTAAGCAA+TGG | 0.563529 | 3.1:-14278897 | MS.gene50873:CDS |
| TGCTGGCATGGGAGAACAAG+TGG | 0.566560 | 3.1:-14279525 | MS.gene50873:CDS |
| ACAAAGCCAGGATCCCAACC+TGG | 0.576866 | 3.1:+14278837 | None:intergenic |
| TCCATACACATCACATGACA+TGG | 0.582605 | 3.1:-14278979 | MS.gene50873:CDS |
| CTTGCTGTTGAAACCTGTGA+TGG | 0.582868 | 3.1:-14280061 | MS.gene50873:CDS |
| TCTTCAATCATGCTACATGT+AGG | 0.586716 | 3.1:+14278783 | None:intergenic |
| TGCTACCCATGAGGAAGATG+AGG | 0.586723 | 3.1:-14279258 | MS.gene50873:CDS |
| GTAAGCAATGGTTACAGCCA+AGG | 0.597893 | 3.1:-14278885 | MS.gene50873:CDS |
| CCTGTGATGGACATCCTAGA+GGG | 0.599466 | 3.1:-14280048 | MS.gene50873:CDS |
| AGAATCCTCATCTTCCTCAT+GGG | 0.600761 | 3.1:+14279253 | None:intergenic |
| CTGATAGTGATAATGATGAA+TGG | 0.603537 | 3.1:-14279304 | MS.gene50873:CDS |
| TCCTGGGCTTGAATCAGATG+AGG | 0.606024 | 3.1:+14279035 | None:intergenic |
| CCTGGGCTTGAATCAGATGA+GGG | 0.606854 | 3.1:+14279036 | None:intergenic |
| GATGTATAGGCTGTTCTGAA+CGG | 0.621550 | 3.1:+14279966 | None:intergenic |
| GATAAAGGTAGATAATCGCT+GGG | 0.622907 | 3.1:+14280303 | None:intergenic |
| GATTGTAGCTGCGAGGACAG+TGG | 0.623911 | 3.1:-14279638 | MS.gene50873:CDS |
| AGCATTGTGATGCACCAGGT+TGG | 0.624713 | 3.1:-14278851 | MS.gene50873:CDS |
| CTGGTGGCCCAAGAAGAAGC+AGG | 0.631250 | 3.1:+14280010 | None:intergenic |
| AGTTGCTTCAAGGGAGACCA+AGG | 0.631504 | 3.1:-14278955 | MS.gene50873:CDS |
| CCAACTGATACAGGCTTGCG+AGG | 0.632606 | 3.1:+14279830 | None:intergenic |
| TTACAGCCAAGGATATGTGA+TGG | 0.634564 | 3.1:-14278874 | MS.gene50873:CDS |
| AGAATGGGAATAGTGATCAG+TGG | 0.637181 | 3.1:-14278929 | MS.gene50873:CDS |
| CATAAGGACATTAACTCATG+AGG | 0.642135 | 3.1:-14279882 | MS.gene50873:CDS |
| ATCTTCGGTAGTGCAACTGG+TGG | 0.650760 | 3.1:+14279994 | None:intergenic |
| ATGGAGCATTGTGATGCACC+AGG | 0.655196 | 3.1:-14278855 | MS.gene50873:CDS |
| GCAAGGTAGTGACGACAATG+AGG | 0.661639 | 3.1:-14279282 | MS.gene50873:CDS |
| ATGAGTACTTCAGTCCAGAA+CGG | 0.667987 | 3.1:-14279931 | MS.gene50873:CDS |
| CCTCTAAGTGATCATCATTG+CGG | 0.670801 | 3.1:+14279183 | None:intergenic |
| GAATAGTAGATCAGACCAAG+AGG | 0.672649 | 3.1:-14279115 | MS.gene50873:CDS |
| ACCTGTGATGGACATCCTAG+AGG | 0.674785 | 3.1:-14280049 | MS.gene50873:CDS |
| CTGGGCTTGAATCAGATGAG+GGG | 0.684489 | 3.1:+14279037 | None:intergenic |
| CCATACACATCACATGACAT+GGG | 0.689211 | 3.1:-14278978 | MS.gene50873:CDS |
| AGATGAACATCTATTTCACA+AGG | 0.692555 | 3.1:-14279483 | MS.gene50873:CDS |
| CAATGAGGTTGCTACCCATG+AGG | 0.696579 | 3.1:-14279267 | MS.gene50873:CDS |
| CTGTGATGGACATCCTAGAG+GGG | 0.704316 | 3.1:-14280047 | MS.gene50873:CDS |
| AGTGATAATGATGAATGGCA+AGG | 0.715180 | 3.1:-14279299 | MS.gene50873:CDS |
| ATAGAGGAAGGATATGCACA+AGG | 0.716188 | 3.1:-14280106 | MS.gene50873:intron |
| AAGAACTGATTGTAGCTGCG+AGG | 0.720002 | 3.1:-14279645 | MS.gene50873:CDS |
| GAGGAAGGATATGCACAAGG+TGG | 0.730040 | 3.1:-14280103 | MS.gene50873:CDS |
| AATGGGAATAGTGATCAGTG+GGG | 0.799299 | 3.1:-14278927 | MS.gene50873:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAGAAATTTATTGAATT+GGG | - | chr3.1:14279564-14279583 | MS.gene50873:CDS | 15.0% |
| !! | AAAAAACTATTAAAAACCCT+TGG | - | chr3.1:14279540-14279559 | MS.gene50873:CDS | 20.0% |
| !! | AAAAACTATTAAAAACCCTT+GGG | - | chr3.1:14279541-14279560 | MS.gene50873:CDS | 20.0% |
| !! | ACTATGTAATATACATTTCA+AGG | - | chr3.1:14278929-14278948 | MS.gene50873:CDS | 20.0% |
| !! | GATTGAGAAATTTATTGAAT+TGG | - | chr3.1:14279563-14279582 | MS.gene50873:CDS | 20.0% |
| !! | TTGAGAAATTTATTGAATTG+GGG | - | chr3.1:14279565-14279584 | MS.gene50873:CDS | 20.0% |
| ! | AATAAATTTCTCAATCCCAA+GGG | + | chr3.1:14279559-14279578 | None:intergenic | 25.0% |
| ! | ATGTGTAAGACAACATATAA+TGG | - | chr3.1:14279509-14279528 | MS.gene50873:CDS | 25.0% |
| ! | GATGAAAATTGTGATGTTAA+TGG | - | chr3.1:14279978-14279997 | MS.gene50873:CDS | 25.0% |
| !! | TATAATAATGGAGTAAGCAA+TGG | - | chr3.1:14280218-14280237 | MS.gene50873:intron | 25.0% |
| !!! | GATTTTAATCTTGTGCAATT+TGG | - | chr3.1:14278899-14278918 | MS.gene50873:CDS | 25.0% |
| AAGCTGAAAAAAGAATGATG+GGG | - | chr3.1:14279385-14279404 | MS.gene50873:CDS | 30.0% | |
| ACAAGTATCATCTTCATAGA+TGG | + | chr3.1:14279901-14279920 | None:intergenic | 30.0% | |
| ACATTGTAATTCATAGAGGA+AGG | - | chr3.1:14278997-14279016 | MS.gene50873:CDS | 30.0% | |
| AGATGAACATCTATTTCACA+AGG | - | chr3.1:14279632-14279651 | MS.gene50873:CDS | 30.0% | |
| AGATTCAAACCTCAATGTTT+GGG | - | chr3.1:14279353-14279372 | MS.gene50873:CDS | 30.0% | |
| CAAGTATCATCTTCATAGAT+GGG | + | chr3.1:14279900-14279919 | None:intergenic | 30.0% | |
| CAATAAATTTCTCAATCCCA+AGG | + | chr3.1:14279560-14279579 | None:intergenic | 30.0% | |
| GAAGCTGAAAAAAGAATGAT+GGG | - | chr3.1:14279384-14279403 | MS.gene50873:CDS | 30.0% | |
| GGAAAAACAGATTCAGATAA+AGG | + | chr3.1:14278830-14278849 | None:intergenic | 30.0% | |
| GTCTACATTGTAATTCATAG+AGG | - | chr3.1:14278993-14279012 | MS.gene50873:CDS | 30.0% | |
| TATCACTATCAGCACTTAAT+AGG | + | chr3.1:14279803-14279822 | None:intergenic | 30.0% | |
| TCATGAGTTAATGTCCTTAT+GGG | + | chr3.1:14279234-14279253 | None:intergenic | 30.0% | |
| TGAAGCTGAAAAAAGAATGA+TGG | - | chr3.1:14279383-14279402 | MS.gene50873:CDS | 30.0% | |
| ! | AGCATGATTGAAGAAGTTTT+TGG | - | chr3.1:14280341-14280360 | MS.gene50873:CDS | 30.0% |
| ! | CTGATAGTGATAATGATGAA+TGG | - | chr3.1:14279811-14279830 | MS.gene50873:CDS | 30.0% |
| !! | ATCTTGCTCTAAAAGTAAGA+TGG | - | chr3.1:14280301-14280320 | MS.gene50873:CDS | 30.0% |
| !! | ATTGAAGAAGTTTTTGGAGA+TGG | - | chr3.1:14280347-14280366 | MS.gene50873:CDS | 30.0% |
| AGATAAAGGTAGATAATCGC+TGG | + | chr3.1:14278816-14278835 | None:intergenic | 35.0% | |
| AGTTCCAGAAATTCTTGTTG+AGG | + | chr3.1:14279680-14279699 | None:intergenic | 35.0% | |
| ATAATTCCATCTCAGGCATA+GGG | + | chr3.1:14279422-14279441 | None:intergenic | 35.0% | |
| CAGATTCAAACCTCAATGTT+TGG | - | chr3.1:14279352-14279371 | MS.gene50873:CDS | 35.0% | |
| CATAAGGACATTAACTCATG+AGG | - | chr3.1:14279233-14279252 | MS.gene50873:CDS | 35.0% | |
| CTCATGAGTTAATGTCCTTA+TGG | + | chr3.1:14279235-14279254 | None:intergenic | 35.0% | |
| GATAAAGGTAGATAATCGCT+GGG | + | chr3.1:14278815-14278834 | None:intergenic | 35.0% | |
| GTTCCAGAAATTCTTGTTGA+GGG | + | chr3.1:14279679-14279698 | None:intergenic | 35.0% | |
| TCTTCAATCATGCTACATGT+AGG | + | chr3.1:14280335-14280354 | None:intergenic | 35.0% | |
| TGGAAAAAGGGAAGATGTAT+AGG | + | chr3.1:14279165-14279184 | None:intergenic | 35.0% | |
| TGGGGCAGTAACTATAATAA+TGG | - | chr3.1:14280206-14280225 | MS.gene50873:intron | 35.0% | |
| TTTATTGAATTGGGGTTTGC+TGG | - | chr3.1:14279573-14279592 | MS.gene50873:CDS | 35.0% | |
| ! | ACTGAAGTACTCATGGAAAA+AGG | + | chr3.1:14279178-14279197 | None:intergenic | 35.0% |
| ! | AGTGATAATGATGAATGGCA+AGG | - | chr3.1:14279816-14279835 | MS.gene50873:CDS | 35.0% |
| ! | CGTTCTGGACTGAAATATAT+TGG | + | chr3.1:14279210-14279229 | None:intergenic | 35.0% |
| ! | CTGAAGTACTCATGGAAAAA+GGG | + | chr3.1:14279177-14279196 | None:intergenic | 35.0% |
| ! | CTTTTCCAACTTCATCATCA+AGG | + | chr3.1:14279449-14279468 | None:intergenic | 35.0% |
| ! | TTTTCCTTCACGAAGCAAAA+AGG | - | chr3.1:14279713-14279732 | MS.gene50873:CDS | 35.0% |
| !! | CTTGATGATGAAGTTGGAAA+AGG | - | chr3.1:14279447-14279466 | MS.gene50873:CDS | 35.0% |
| !! | CTTTTTCATCCCAAACATGT+TGG | + | chr3.1:14280106-14280125 | None:intergenic | 35.0% |
| AAATTCTTGTTGAGGGATGC+TGG | + | chr3.1:14279672-14279691 | None:intergenic | 40.0% | |
| AATGCTCCATCACATATCCT+TGG | + | chr3.1:14280250-14280269 | None:intergenic | 40.0% | |
| AATGGGAATAGTGATCAGTG+GGG | - | chr3.1:14280188-14280207 | MS.gene50873:intron | 40.0% | |
| ACCTGAAGTCTTAGCCAAAT+GGG | + | chr3.1:14278870-14278889 | None:intergenic | 40.0% | |
| ACTATTCCCATTCTTCACCT+TGG | + | chr3.1:14280180-14280199 | None:intergenic | 40.0% | |
| AGAATCCTCATCTTCCTCAT+GGG | + | chr3.1:14279865-14279884 | None:intergenic | 40.0% | |
| AGAATGGGAATAGTGATCAG+TGG | - | chr3.1:14280186-14280205 | MS.gene50873:intron | 40.0% | |
| AGGAGAATGTTCAAGGAGTA+TGG | + | chr3.1:14279268-14279287 | None:intergenic | 40.0% | |
| AGGCTAGATAATTCCATCTC+AGG | + | chr3.1:14279429-14279448 | None:intergenic | 40.0% | |
| AGGTATTCCTGCTTCTTCTT+GGG | - | chr3.1:14279098-14279117 | MS.gene50873:CDS | 40.0% | |
| ATAGAGGAAGGATATGCACA+AGG | - | chr3.1:14279009-14279028 | MS.gene50873:CDS | 40.0% | |
| ATCACCATCAATGTTCCTCT+TGG | + | chr3.1:14280018-14280037 | None:intergenic | 40.0% | |
| ATGAGTACTTCAGTCCAGAA+CGG | - | chr3.1:14279184-14279203 | MS.gene50873:CDS | 40.0% | |
| ATTTGGCTAAGACTTCAGGT+GGG | - | chr3.1:14278870-14278889 | MS.gene50873:CDS | 40.0% | |
| CATCCCTCAACAAGAATTTC+TGG | - | chr3.1:14279673-14279692 | MS.gene50873:CDS | 40.0% | |
| CCATACACATCACATGACAT+GGG | - | chr3.1:14280137-14280156 | MS.gene50873:intron | 40.0% | |
| CCTCTAAGTGATCATCATTG+CGG | + | chr3.1:14279935-14279954 | None:intergenic | 40.0% | |
| CTGAAATATATTGGCCGTTC+TGG | + | chr3.1:14279201-14279220 | None:intergenic | 40.0% | |
| CTTGATATGCATCACTCTAG+TGG | - | chr3.1:14280053-14280072 | MS.gene50873:CDS | 40.0% | |
| GAATAGTAGATCAGACCAAG+AGG | - | chr3.1:14280000-14280019 | MS.gene50873:CDS | 40.0% | |
| GAATGGGAATAGTGATCAGT+GGG | - | chr3.1:14280187-14280206 | MS.gene50873:intron | 40.0% | |
| GATAATTCCATCTCAGGCAT+AGG | + | chr3.1:14279423-14279442 | None:intergenic | 40.0% | |
| GCTTCGTGAAGGAAAAACAA+TGG | + | chr3.1:14279709-14279728 | None:intergenic | 40.0% | |
| TAGGTATTCCTGCTTCTTCT+TGG | - | chr3.1:14279097-14279116 | MS.gene50873:CDS | 40.0% | |
| TATTATCCCTATGCCTGAGA+TGG | - | chr3.1:14279413-14279432 | MS.gene50873:CDS | 40.0% | |
| TCAAACCTCAATGTTTGGGA+TGG | - | chr3.1:14279357-14279376 | MS.gene50873:CDS | 40.0% | |
| TCCATACACATCACATGACA+TGG | - | chr3.1:14280136-14280155 | MS.gene50873:intron | 40.0% | |
| TTACAGCCAAGGATATGTGA+TGG | - | chr3.1:14280241-14280260 | MS.gene50873:intron | 40.0% | |
| TTAGAGCAAGATACAAAGCC+AGG | + | chr3.1:14280293-14280312 | None:intergenic | 40.0% | |
| TTCTGAACGGTGATCATCTT+CGG | + | chr3.1:14279139-14279158 | None:intergenic | 40.0% | |
| ! | AAACCTCAATGTTTGGGATG+GGG | - | chr3.1:14279359-14279378 | MS.gene50873:CDS | 40.0% |
| ! | ATCTCCTTTTTGCTTCGTGA+AGG | + | chr3.1:14279720-14279739 | None:intergenic | 40.0% |
| ! | CAAACCTCAATGTTTGGGAT+GGG | - | chr3.1:14279358-14279377 | MS.gene50873:CDS | 40.0% |
| ! | GATGTATAGGCTGTTCTGAA+CGG | + | chr3.1:14279152-14279171 | None:intergenic | 40.0% |
| ! | GTTCAAGGAGTATGGAATAG+AGG | + | chr3.1:14279260-14279279 | None:intergenic | 40.0% |
| !! | AAGTTTTTGGAGATGGACGA+AGG | - | chr3.1:14280354-14280373 | MS.gene50873:CDS | 40.0% |
| !! | TCTAGCCTTGATGATGAAGT+TGG | - | chr3.1:14279441-14279460 | MS.gene50873:CDS | 40.0% |
| AAGAACTGATTGTAGCTGCG+AGG | - | chr3.1:14279470-14279489 | MS.gene50873:CDS | 45.0% | |
| AATGTCCTTATGGGTCGTTC+TGG | + | chr3.1:14279225-14279244 | None:intergenic | 45.0% | |
| ACCCATTTGGCTAAGACTTC+AGG | - | chr3.1:14278866-14278885 | MS.gene50873:CDS | 45.0% | |
| AGCATCTCCTCAGCATCAAA+AGG | + | chr3.1:14278758-14278777 | None:intergenic | 45.0% | |
| ATCAAGCTGATGTTCCTGCA+TGG | - | chr3.1:14279316-14279335 | MS.gene50873:CDS | 45.0% | |
| ATCATCTTCGGTAGTGCAAC+TGG | + | chr3.1:14279127-14279146 | None:intergenic | 45.0% | |
| ATCCCAAACATGTTGGTCCT+GGG | + | chr3.1:14280099-14280118 | None:intergenic | 45.0% | |
| ATGACATGGGAGTTGCTTCA+AGG | - | chr3.1:14280150-14280169 | MS.gene50873:intron | 45.0% | |
| CACCTGAAGTCTTAGCCAAA+TGG | + | chr3.1:14278871-14278890 | None:intergenic | 45.0% | |
| CAGAATCCTCATCTTCCTCA+TGG | + | chr3.1:14279866-14279885 | None:intergenic | 45.0% | |
| CAGACCAAGAGGAACATTGA+TGG | - | chr3.1:14280011-14280030 | MS.gene50873:CDS | 45.0% | |
| CATTTGGCTAAGACTTCAGG+TGG | - | chr3.1:14278869-14278888 | MS.gene50873:CDS | 45.0% | |
| CCCATGTCATGTGATGTGTA+TGG | + | chr3.1:14280140-14280159 | None:intergenic | 45.0% | |
| CCGCAATGATGATCACTTAG+AGG | - | chr3.1:14279932-14279951 | MS.gene50873:CDS | 45.0% | |
| CTCAGGCATAGGGATAATAC+AGG | + | chr3.1:14279412-14279431 | None:intergenic | 45.0% | |
| GAGAACAAGTGGCTCAAAAG+TGG | - | chr3.1:14279601-14279620 | MS.gene50873:CDS | 45.0% | |
| GTAAGCAATGGTTACAGCCA+AGG | - | chr3.1:14280230-14280249 | MS.gene50873:intron | 45.0% | |
| TCAAGCTGATGTTCCTGCAT+GGG | - | chr3.1:14279317-14279336 | MS.gene50873:CDS | 45.0% | |
| TGACATGGGAGTTGCTTCAA+GGG | - | chr3.1:14280151-14280170 | MS.gene50873:intron | 45.0% | |
| TGATCAGCTCCAACTGATAC+AGG | + | chr3.1:14279297-14279316 | None:intergenic | 45.0% | |
| TGATGATTGCGACACCCATT+TGG | - | chr3.1:14278853-14278872 | MS.gene50873:CDS | 45.0% | |
| TTCAAACACCCGAAACATGC+AGG | - | chr3.1:14278788-14278807 | MS.gene50873:CDS | 45.0% | |
| ! | GAAACGTCCTTTTGATGCTG+AGG | - | chr3.1:14278748-14278767 | MS.gene50873:CDS | 45.0% |
| ! | GTTCTGGACTGAAGTACTCA+TGG | + | chr3.1:14279185-14279204 | None:intergenic | 45.0% |
| ! | TTCCTGCATGGGGTTTTTCT+GGG | - | chr3.1:14279328-14279347 | MS.gene50873:CDS | 45.0% |
| !! | CTTGCTGTTGAAACCTGTGA+TGG | - | chr3.1:14279054-14279073 | MS.gene50873:CDS | 45.0% |
| AAGCCCAGGACCAACATGTT+TGG | - | chr3.1:14280093-14280112 | MS.gene50873:CDS | 50.0% | |
| AGCATTGTGATGCACCAGGT+TGG | - | chr3.1:14280264-14280283 | MS.gene50873:CDS | 50.0% | |
| AGCCCAGGACCAACATGTTT+GGG | - | chr3.1:14280094-14280113 | MS.gene50873:CDS | 50.0% | |
| AGGGAGACCAAGGTGAAGAA+TGG | - | chr3.1:14280170-14280189 | MS.gene50873:intron | 50.0% | |
| AGTTGCTTCAAGGGAGACCA+AGG | - | chr3.1:14280160-14280179 | MS.gene50873:intron | 50.0% | |
| ATCTTCGGTAGTGCAACTGG+TGG | + | chr3.1:14279124-14279143 | None:intergenic | 50.0% | |
| CAAGCTGATGTTCCTGCATG+GGG | - | chr3.1:14279318-14279337 | MS.gene50873:CDS | 50.0% | |
| CAATGAGGTTGCTACCCATG+AGG | - | chr3.1:14279848-14279867 | MS.gene50873:CDS | 50.0% | |
| CATCCCAAACATGTTGGTCC+TGG | + | chr3.1:14280100-14280119 | None:intergenic | 50.0% | |
| CATCCCCATCCCAAACATTG+AGG | + | chr3.1:14279365-14279384 | None:intergenic | 50.0% | |
| CCTGGGCTTGAATCAGATGA+GGG | + | chr3.1:14280082-14280101 | None:intergenic | 50.0% | |
| CTGGGCTTGAATCAGATGAG+GGG | + | chr3.1:14280081-14280100 | None:intergenic | 50.0% | |
| GAGGAAGGATATGCACAAGG+TGG | - | chr3.1:14279012-14279031 | MS.gene50873:CDS | 50.0% | |
| GCAAGGTAGTGACGACAATG+AGG | - | chr3.1:14279833-14279852 | MS.gene50873:CDS | 50.0% | |
| GCATTGTGATGCACCAGGTT+GGG | - | chr3.1:14280265-14280284 | MS.gene50873:CDS | 50.0% | |
| GCTTGCGAGGAGAATGTTCA+AGG | + | chr3.1:14279275-14279294 | None:intergenic | 50.0% | |
| GGGAGACCAAGGTGAAGAAT+GGG | - | chr3.1:14280171-14280190 | MS.gene50873:intron | 50.0% | |
| TCAGTCCAGAACGACCCATA+AGG | - | chr3.1:14279217-14279236 | MS.gene50873:CDS | 50.0% | |
| TCCTGGGCTTGAATCAGATG+AGG | + | chr3.1:14280083-14280102 | None:intergenic | 50.0% | |
| TGATGCTGAGGAGATGCTTG+AGG | - | chr3.1:14278760-14278779 | MS.gene50873:CDS | 50.0% | |
| TGCTACCCATGAGGAAGATG+AGG | - | chr3.1:14279857-14279876 | MS.gene50873:CDS | 50.0% | |
| ! | GTTCCTGCATGGGGTTTTTC+TGG | - | chr3.1:14279327-14279346 | MS.gene50873:CDS | 50.0% |
| ! | TGGGTGTCGCAATCATCATC+AGG | + | chr3.1:14278851-14278870 | None:intergenic | 50.0% |
| !! | ACCTGTGATGGACATCCTAG+AGG | - | chr3.1:14279066-14279085 | MS.gene50873:CDS | 50.0% |
| !! | ATGGAGCATTGTGATGCACC+AGG | - | chr3.1:14280260-14280279 | MS.gene50873:CDS | 50.0% |
| !! | CCTGTGATGGACATCCTAGA+GGG | - | chr3.1:14279067-14279086 | MS.gene50873:CDS | 50.0% |
| !! | CTGTGATGGACATCCTAGAG+GGG | - | chr3.1:14279068-14279087 | MS.gene50873:CDS | 50.0% |
| !! | GAATTGGGGTTTGCTGGCAT+GGG | - | chr3.1:14279579-14279598 | MS.gene50873:CDS | 50.0% |
| !! | TGAATTGGGGTTTGCTGGCA+TGG | - | chr3.1:14279578-14279597 | MS.gene50873:CDS | 50.0% |
| ACAAAGCCAGGATCCCAACC+TGG | + | chr3.1:14280281-14280300 | None:intergenic | 55.0% | |
| ATACCTATCCCAGCCCCTCT+AGG | + | chr3.1:14279084-14279103 | None:intergenic | 55.0% | |
| ATGGACATCCTAGAGGGGCT+GGG | - | chr3.1:14279073-14279092 | MS.gene50873:CDS | 55.0% | |
| CCAACTGATACAGGCTTGCG+AGG | + | chr3.1:14279288-14279307 | None:intergenic | 55.0% | |
| CCCTCATCTGATTCAAGCCC+AGG | - | chr3.1:14280079-14280098 | MS.gene50873:CDS | 55.0% | |
| CCTCGCAAGCCTGTATCAGT+TGG | - | chr3.1:14279285-14279304 | MS.gene50873:CDS | 55.0% | |
| GAAAGCGAGCTGAGCAGAAC+AGG | - | chr3.1:14279772-14279791 | MS.gene50873:CDS | 55.0% | |
| GACCCAGAAAAACCCCATGC+AGG | + | chr3.1:14279333-14279352 | None:intergenic | 55.0% | |
| GATTGTAGCTGCGAGGACAG+TGG | - | chr3.1:14279477-14279496 | MS.gene50873:CDS | 55.0% | |
| TCGCTGGGACCTGCATGTTT+CGG | + | chr3.1:14278800-14278819 | None:intergenic | 55.0% | |
| TGCTGGCATGGGAGAACAAG+TGG | - | chr3.1:14279590-14279609 | MS.gene50873:CDS | 55.0% | |
| !! | CCCTCTAGGATGTCCATCAC+AGG | + | chr3.1:14279070-14279089 | None:intergenic | 55.0% |
| CATCCTAGAGGGGCTGGGAT+AGG | - | chr3.1:14279078-14279097 | MS.gene50873:CDS | 60.0% | |
| CGCTGGGACCTGCATGTTTC+GGG | + | chr3.1:14278799-14278818 | None:intergenic | 60.0% | |
| CTGGTGGCCCAAGAAGAAGC+AGG | + | chr3.1:14279108-14279127 | None:intergenic | 60.0% | |
| GATGGACATCCTAGAGGGGC+TGG | - | chr3.1:14279072-14279091 | MS.gene50873:CDS | 60.0% | |
| ! | GATGCACCAGGTTGGGATCC+TGG | - | chr3.1:14280272-14280291 | MS.gene50873:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 14278740 | 14280397 | 14278740 | ID=MS.gene50873 |
| chr3.1 | mRNA | 14278740 | 14280397 | 14278740 | ID=MS.gene50873.t1;Parent=MS.gene50873 |
| chr3.1 | exon | 14280250 | 14280397 | 14280250 | ID=MS.gene50873.t1.exon1;Parent=MS.gene50873.t1 |
| chr3.1 | CDS | 14280250 | 14280397 | 14280250 | ID=cds.MS.gene50873.t1;Parent=MS.gene50873.t1 |
| chr3.1 | exon | 14278740 | 14280124 | 14278740 | ID=MS.gene50873.t1.exon2;Parent=MS.gene50873.t1 |
| chr3.1 | CDS | 14278740 | 14280124 | 14278740 | ID=cds.MS.gene50873.t1;Parent=MS.gene50873.t1 |
| Gene Sequence |
| Protein sequence |
