AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51814


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51814.t1 MTR_3g023780 95.136 514 24 1 1 513 1 514 0.0 989
MS.gene51814.t1 MTR_7g078120 38.624 189 103 4 140 326 378 555 5.21e-31 127
MS.gene51814.t1 MTR_7g078120 38.624 189 103 4 140 326 378 555 7.64e-31 127
MS.gene51814.t1 MTR_8g098645 39.560 182 97 5 147 326 141 311 2.47e-25 107
MS.gene51814.t1 MTR_1g073380 37.931 203 101 6 132 326 378 563 3.12e-25 109
MS.gene51814.t1 MTR_8g098635 36.224 196 102 7 139 326 82 262 5.69e-25 105
MS.gene51814.t1 MTR_1g073590 38.172 186 90 6 149 326 382 550 2.03e-24 107
MS.gene51814.t1 MTR_1g073530 38.172 186 90 6 149 326 385 553 2.07e-24 107
MS.gene51814.t1 MTR_8g098635 36.224 196 102 7 139 326 165 345 2.75e-24 104
MS.gene51814.t1 MTR_8g098605 37.912 182 100 5 147 326 391 561 6.45e-24 105
MS.gene51814.t1 MTR_8g028905 34.783 184 103 7 149 326 408 580 1.74e-22 101
MS.gene51814.t1 MTR_7g066890 32.778 180 114 5 143 321 188 361 1.92e-18 87.4
MS.gene51814.t1 MTR_7g066890 32.778 180 114 5 143 321 290 463 4.58e-18 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51814.t1 AT1G13880 36.813 364 204 9 4 366 4 342 1.84e-62 210
MS.gene51814.t1 AT1G13880 36.813 364 204 9 4 366 14 352 2.44e-62 210
MS.gene51814.t1 AT1G13880 36.538 364 206 9 4 366 4 343 2.62e-62 210
MS.gene51814.t1 AT1G26580 44.223 251 128 5 114 352 33 283 2.17e-61 207
MS.gene51814.t1 AT1G26580 37.669 369 193 10 1 352 1 349 4.42e-61 208
MS.gene51814.t1 AT1G26580 37.669 369 193 10 1 352 1 349 4.42e-61 208
MS.gene51814.t1 AT2G03470 48.718 195 96 1 134 328 107 297 3.48e-59 202
MS.gene51814.t1 AT2G03470 48.718 195 96 1 134 328 108 298 3.48e-59 202
MS.gene51814.t1 AT4G11400 40.000 190 95 5 145 330 370 544 6.10e-29 120
MS.gene51814.t1 AT4G11400 40.000 190 95 5 145 330 370 544 6.10e-29 120
MS.gene51814.t1 AT5G04110 31.868 182 115 4 146 325 358 532 1.76e-22 101
MS.gene51814.t1 AT5G04110 31.868 182 115 4 146 325 358 532 1.76e-22 101
MS.gene51814.t1 AT5G04110 31.868 182 115 4 146 325 359 533 1.77e-22 101
MS.gene51814.t1 AT2G46040 35.165 182 99 6 151 326 362 530 7.73e-17 84.0
MS.gene51814.t1 AT2G46040 35.165 182 99 6 151 326 362 530 7.73e-17 84.0
MS.gene51814.t1 AT2G46040 35.165 182 99 6 151 326 376 544 9.35e-17 83.6
MS.gene51814.t1 AT5G04110 30.405 148 100 3 146 291 358 504 2.03e-14 76.3

Find 137 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGAAGTACTCATGGAAAA+AGG 0.244769 3.4:+16118200 None:intergenic
CATCCCTCAACAAGAATTTC+TGG 0.247523 3.4:-16117702 MS.gene51814:CDS
ATTGAGAAATTCATTGAATT+GGG 0.268674 3.4:-16117811 MS.gene51814:CDS
CTCATGAGTTAATGTCCTTA+TGG 0.270357 3.4:+16118143 None:intergenic
CTGAAATATATTGGCCGTTC+TGG 0.274949 3.4:+16118177 None:intergenic
TTCATTGAATTGGGGTTTGC+TGG 0.296184 3.4:-16117802 MS.gene51814:CDS
TATCACTATCAGCACTTAAT+AGG 0.298492 3.4:+16117575 None:intergenic
CATCCCAAACATGTTGGTCC+TGG 0.308074 3.4:+16117278 None:intergenic
GATGAAAATTGTGATGTTAA+TGG 0.308465 3.4:-16117397 MS.gene51814:CDS
CAGATTCAAACCTCAATGTT+TGG 0.315295 3.4:-16118023 MS.gene51814:CDS
GATTGAGAAATTCATTGAAT+TGG 0.317579 3.4:-16117812 MS.gene51814:CDS
CGCTGGGACCTGCATGCTTC+GGG 0.328924 3.4:+16118591 None:intergenic
ACAAGTATCATCTTCATAGA+TGG 0.329130 3.4:+16117477 None:intergenic
AAGCCCAGGACCAACATGTT+TGG 0.344788 3.4:-16117282 MS.gene51814:CDS
TGAATTGGGGTTTGCTGGCA+TGG 0.361365 3.4:-16117797 MS.gene51814:CDS
AGCCCAGGACCAACATGTTT+GGG 0.368080 3.4:-16117281 MS.gene51814:CDS
AGGAGAATGTTCAAGGAGTA+TGG 0.375340 3.4:+16118110 None:intergenic
CGTTCTGGACTGAAATATAT+TGG 0.377694 3.4:+16118168 None:intergenic
GCTGGGGACTCTCCTGTGAT+AGG 0.378845 3.4:-16118297 MS.gene51814:CDS
TCGCTGGGACCTGCATGCTT+CGG 0.383524 3.4:+16118590 None:intergenic
CACCTGAAGTCTTGGCCAAA+TGG 0.383926 3.4:+16118519 None:intergenic
CCGCAATGATGATCACTTAG+AGG 0.384163 3.4:-16117443 MS.gene51814:CDS
AGATTCAAACCTCAATGTTT+GGG 0.386204 3.4:-16118022 MS.gene51814:CDS
CATTGGGGCAGCAACTATAA+TGG 0.390607 3.4:-16117172 MS.gene51814:CDS
TAGGTATTCCTGCTTCTACT+TGG 0.392488 3.4:-16118278 MS.gene51814:CDS
ACCCATTTGGCCAAGACTTC+AGG 0.405780 3.4:-16118521 MS.gene51814:intron
GAGTGGGAATGGTGATCATT+GGG 0.407252 3.4:-16117188 MS.gene51814:CDS
AAATTCTTGTTGAGGGATGC+TGG 0.410628 3.4:+16117706 None:intergenic
GAAAGCGAGCTGAGCAGAAC+AGG 0.412737 3.4:-16117603 MS.gene51814:CDS
ATGTGTAAGACAACATATAA+TGG 0.417704 3.4:-16117866 MS.gene51814:CDS
TTTAGCCTTGATGATGAAGT+TGG 0.419143 3.4:-16117934 MS.gene51814:CDS
TCATGAGTTAATGTCCTTAT+GGG 0.424228 3.4:+16118144 None:intergenic
AATGTCCTTATGGGTCGTTC+TGG 0.428131 3.4:+16118153 None:intergenic
ATCCCAAACATGTTGGTCCT+GGG 0.430334 3.4:+16117279 None:intergenic
GATGCACCAGGGTGGGATCC+TGG 0.430640 3.4:-16117106 MS.gene51814:CDS
ATGGACATCCTAGAGGGGCT+GGG 0.451477 3.4:-16118314 MS.gene51814:CDS
AGAGTGGGAATGGTGATCAT+TGG 0.452381 3.4:-16117189 MS.gene51814:CDS
ATCATCTTCAGAAGTGCAAC+TGG 0.452483 3.4:+16118251 None:intergenic
TGATCAGCTCCAACTGATAC+AGG 0.454985 3.4:+16118081 None:intergenic
GATGGACATCCTAGAGGGGC+TGG 0.457386 3.4:-16118315 MS.gene51814:CDS
CCCTCATCTGATTCAAGCCC+AGG 0.459996 3.4:-16117296 MS.gene51814:CDS
AGGCTAAATAATTCCATCTC+AGG 0.465214 3.4:+16117949 None:intergenic
GTTCCAGAAATTCTTGTTGA+GGG 0.466806 3.4:+16117699 None:intergenic
ACCTGAAGTCTTGGCCAAAT+GGG 0.467786 3.4:+16118520 None:intergenic
CTTGATGATGAAGTTGGAAA+AGG 0.469243 3.4:-16117928 MS.gene51814:CDS
TAAACTCCCACCTGAAGTCT+TGG 0.475135 3.4:+16118511 None:intergenic
ATCTTGCTCTAAAAGTAAGA+TGG 0.482487 3.4:-16117077 MS.gene51814:CDS
TGATGATTGCGACACCCATT+TGG 0.482669 3.4:-16118534 MS.gene51814:CDS
AGCATCTCCTCAGCATCAAA+AGG 0.482810 3.4:+16118632 None:intergenic
CAATGAATTTCTCAATCCCA+AGG 0.484694 3.4:+16117818 None:intergenic
CTGGAGCATTGTGATGCACC+AGG 0.488708 3.4:-16117118 MS.gene51814:CDS
CAGAATCCTCATCTTCCTCA+TGG 0.490672 3.4:+16117512 None:intergenic
CATCCCCATCCCAAACATTG+AGG 0.498295 3.4:+16118013 None:intergenic
ATCACCATCAATGTTCCTCT+TGG 0.498646 3.4:+16117360 None:intergenic
CAAACCTCAATGTTTGGGAT+GGG 0.499908 3.4:-16118017 MS.gene51814:CDS
CTTGATATGCATCACTCTAG+TGG 0.500136 3.4:-16117322 MS.gene51814:CDS
TGGGTGTCGCAATCATCATC+AGG 0.505398 3.4:+16118539 None:intergenic
GAATTGGGGTTTGCTGGCAT+GGG 0.506212 3.4:-16117796 MS.gene51814:CDS
ATGACATGGGAGTTGCTTCA+AGG 0.507286 3.4:-16117225 MS.gene51814:CDS
TGTTAACGGTAGAAAATCGC+TGG 0.507449 3.4:+16118574 None:intergenic
TCAAGCTGATGTTCCTGCAT+GGG 0.508514 3.4:-16118058 MS.gene51814:CDS
TGGACATCCTAGAGGGGCTG+GGG 0.508901 3.4:-16118313 MS.gene51814:CDS
AATAATTCCATCTCAGGCAT+AGG 0.513120 3.4:+16117955 None:intergenic
CAAGTATCATCTTCATAGAT+GGG 0.519904 3.4:+16117478 None:intergenic
TTGAGAAATTCATTGAATTG+GGG 0.521028 3.4:-16117810 MS.gene51814:CDS
TCCATACACGTCACATGACA+TGG 0.523040 3.4:-16117239 MS.gene51814:CDS
TCAAACCTCAATGTTTGGGA+TGG 0.524692 3.4:-16118018 MS.gene51814:CDS
TTAGAGCAAGATACAAAGCC+AGG 0.525570 3.4:+16117088 None:intergenic
ACCATTCCCACTCTTCACCT+TGG 0.525767 3.4:+16117198 None:intergenic
TGATGCTGAGGAGATGCTTG+AGG 0.526167 3.4:-16118627 MS.gene51814:CDS
CCCTCTAGGATGTCCATCAC+AGG 0.527463 3.4:+16118320 None:intergenic
CCCATGTCATGTGACGTGTA+TGG 0.528843 3.4:+16117238 None:intergenic
CCTCGCAAGCCTGTATCAGT+TGG 0.530589 3.4:-16118090 MS.gene51814:CDS
TGACATGGGAGTTGCTTCAA+GGG 0.532666 3.4:-16117224 MS.gene51814:CDS
CAAGCTGATGTTCCTGCATG+GGG 0.538451 3.4:-16118057 MS.gene51814:CDS
TATTATCCCTATGCCTGAGA+TGG 0.538511 3.4:-16117962 MS.gene51814:CDS
CTCAGGCATAGGGATAATAC+AGG 0.539552 3.4:+16117966 None:intergenic
ATAATTCCATCTCAGGCATA+GGG 0.542120 3.4:+16117956 None:intergenic
AAACCTCAATGTTTGGGATG+GGG 0.542867 3.4:-16118016 MS.gene51814:CDS
CATACCAAGAGGAACATTGA+TGG 0.543048 3.4:-16117364 MS.gene51814:CDS
GGAGAGTCCCCAGCCCCTCT+AGG 0.543130 3.4:+16118306 None:intergenic
ACCAAGGTGAAGAGTGGGAA+TGG 0.543330 3.4:-16117199 MS.gene51814:CDS
TTCAAACACCCGAAGCATGC+AGG 0.544378 3.4:-16118599 MS.gene51814:CDS
GAGAACAAGTGGCTCAAAAG+TGG 0.552554 3.4:-16117774 MS.gene51814:CDS
GCTTGCGAGGAGAATGTTCA+AGG 0.553211 3.4:+16118103 None:intergenic
TCAGTCCAGAACGACCCATA+AGG 0.556681 3.4:-16118158 MS.gene51814:CDS
AGTTCCAGAAATTCTTGTTG+AGG 0.557435 3.4:+16117698 None:intergenic
ATCAAGCTGATGTTCCTGCA+TGG 0.557524 3.4:-16118059 MS.gene51814:CDS
GTTCTGGACTGAAGTACTCA+TGG 0.558958 3.4:+16118193 None:intergenic
GAAGCAGGAATACCTATCAC+AGG 0.558967 3.4:+16118285 None:intergenic
GTAAGCAATGGTTACAGCCA+AGG 0.561471 3.4:-16117148 MS.gene51814:CDS
GTTCAAGGAGTATGGAATAG+AGG 0.561760 3.4:+16118118 None:intergenic
TGCTGGCATGGGAGAACAAG+TGG 0.566560 3.4:-16117785 MS.gene51814:CDS
CTGGTGGGCCAAGTAGAAGC+AGG 0.570184 3.4:+16118270 None:intergenic
CACTATCAGCACTTAATAGG+TGG 0.573148 3.4:+16117578 None:intergenic
AACTATAATGGAGTAAGCAA+TGG 0.575552 3.4:-16117160 MS.gene51814:CDS
TTACAGCCAAGGGTATGTGC+TGG 0.575897 3.4:-16117137 MS.gene51814:CDS
CTTGCTGTTGAAACCTGTGA+TGG 0.582868 3.4:-16118333 MS.gene51814:CDS
AATGCTCCAGCACATACCCT+TGG 0.585409 3.4:+16117131 None:intergenic
TGCTACCCATGAGGAAGATG+AGG 0.586723 3.4:-16117518 MS.gene51814:CDS
AGGGAGACCAAGGTGAAGAG+TGG 0.588865 3.4:-16117205 MS.gene51814:CDS
ATCTTCAGAAGTGCAACTGG+TGG 0.589388 3.4:+16118254 None:intergenic
TCTTCTATCATGCTACATGT+AGG 0.594709 3.4:+16117046 None:intergenic
CCTGTGATGGACATCCTAGA+GGG 0.599466 3.4:-16118320 MS.gene51814:CDS
GGGAGACCAAGGTGAAGAGT+GGG 0.600028 3.4:-16117204 MS.gene51814:CDS
AGAATCCTCATCTTCCTCAT+GGG 0.600761 3.4:+16117513 None:intergenic
CTGATAGTGATAATGATGAA+TGG 0.603537 3.4:-16117564 MS.gene51814:CDS
TCCTGGGCTTGAATCAGATG+AGG 0.606024 3.4:+16117295 None:intergenic
CCTGGGCTTGAATCAGATGA+GGG 0.606854 3.4:+16117296 None:intergenic
AATGAATTTCTCAATCCCAA+GGG 0.607074 3.4:+16117819 None:intergenic
TAAGCAATGGTTACAGCCAA+GGG 0.614655 3.4:-16117147 MS.gene51814:CDS
GATGTATAGGCTGTTCTGAA+CGG 0.621550 3.4:+16118226 None:intergenic
GATTGTAGCTGCGAGGACAG+TGG 0.623911 3.4:-16117898 MS.gene51814:CDS
AGTTGCTTCAAGGGAGACCA+AGG 0.631504 3.4:-16117215 MS.gene51814:CDS
CCAACTGATACAGGCTTGCG+AGG 0.632606 3.4:+16118090 None:intergenic
CATAAGGACATTAACTCATG+AGG 0.642135 3.4:-16118142 MS.gene51814:CDS
TCTTCAGAAGTGCAACTGGT+GGG 0.643393 3.4:+16118255 None:intergenic
GCATTGTGATGCACCAGGGT+GGG 0.646215 3.4:-16117113 MS.gene51814:CDS
GTTAACGGTAGAAAATCGCT+GGG 0.649982 3.4:+16118575 None:intergenic
ACAAAGCCAGGATCCCACCC+TGG 0.650732 3.4:+16117100 None:intergenic
TACATGTAGCATGATAGAAG+AGG 0.651894 3.4:-16117044 MS.gene51814:CDS
CCATACACGTCACATGACAT+GGG 0.663767 3.4:-16117238 MS.gene51814:CDS
ATGAGTACTTCAGTCCAGAA+CGG 0.667987 3.4:-16118191 MS.gene51814:CDS
CCTCTAAGTGATCATCATTG+CGG 0.670801 3.4:+16117443 None:intergenic
ACCTGTGATGGACATCCTAG+AGG 0.674785 3.4:-16118321 MS.gene51814:CDS
TGGAGCATTGTGATGCACCA+GGG 0.681363 3.4:-16117117 MS.gene51814:CDS
CTGGGCTTGAATCAGATGAG+GGG 0.684489 3.4:+16117297 None:intergenic
AGTGGGAATGGTGATCATTG+GGG 0.687140 3.4:-16117187 MS.gene51814:CDS
AGATGAACATCTATTTCACA+AGG 0.692555 3.4:-16117743 MS.gene51814:CDS
CAATGAAGTTGCTACCCATG+AGG 0.694283 3.4:-16117527 MS.gene51814:CDS
AGCATTGTGATGCACCAGGG+TGG 0.699405 3.4:-16117114 MS.gene51814:CDS
CTGTGATGGACATCCTAGAG+GGG 0.704316 3.4:-16118319 MS.gene51814:CDS
GAATATTAGATCATACCAAG+AGG 0.712614 3.4:-16117375 MS.gene51814:CDS
AGTGATAATGATGAATGGCA+AGG 0.715180 3.4:-16117559 MS.gene51814:CDS
ATAGAGGAAGGATATGCACA+AGG 0.716188 3.4:-16118378 MS.gene51814:intron
AAGAACTGATTGTAGCTGCG+AGG 0.720002 3.4:-16117905 MS.gene51814:CDS
GAGGAAGGATATGCACAAGG+TGG 0.730040 3.4:-16118375 MS.gene51814:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACTATTAAAAACCCT+TGG - chr3.4:16117815-16117834 MS.gene51814:CDS 20.0%
!! AAAAACTATTAAAAACCCTT+GGG - chr3.4:16117816-16117835 MS.gene51814:CDS 20.0%
!! ACTATGTAATATACATTTCA+AGG - chr3.4:16117192-16117211 MS.gene51814:CDS 20.0%
!! ATTGAGAAATTCATTGAATT+GGG - chr3.4:16117839-16117858 MS.gene51814:CDS 20.0%
! ATGTGTAAGACAACATATAA+TGG - chr3.4:16117784-16117803 MS.gene51814:CDS 25.0%
! GATGAAAATTGTGATGTTAA+TGG - chr3.4:16118253-16118272 MS.gene51814:CDS 25.0%
! GATTGAGAAATTCATTGAAT+TGG - chr3.4:16117838-16117857 MS.gene51814:CDS 25.0%
! TTGAGAAATTCATTGAATTG+GGG - chr3.4:16117840-16117859 MS.gene51814:CDS 25.0%
AAGCTGAAAAAAGAATGATG+GGG - chr3.4:16117660-16117679 MS.gene51814:CDS 30.0%
AATGAATTTCTCAATCCCAA+GGG + chr3.4:16117834-16117853 None:intergenic 30.0%
ACAAGTATCATCTTCATAGA+TGG + chr3.4:16118176-16118195 None:intergenic 30.0%
ACATTGTAATTCATAGAGGA+AGG - chr3.4:16117260-16117279 MS.gene51814:CDS 30.0%
AGATGAACATCTATTTCACA+AGG - chr3.4:16117907-16117926 MS.gene51814:CDS 30.0%
AGATTCAAACCTCAATGTTT+GGG - chr3.4:16117628-16117647 MS.gene51814:CDS 30.0%
CAAGTATCATCTTCATAGAT+GGG + chr3.4:16118175-16118194 None:intergenic 30.0%
GAAGCTGAAAAAAGAATGAT+GGG - chr3.4:16117659-16117678 MS.gene51814:CDS 30.0%
GAATATTAGATCATACCAAG+AGG - chr3.4:16118275-16118294 MS.gene51814:CDS 30.0%
GGAAAAACAGATTCTGTTAA+CGG + chr3.4:16117093-16117112 None:intergenic 30.0%
GTCTACATTGTAATTCATAG+AGG - chr3.4:16117256-16117275 MS.gene51814:CDS 30.0%
TATCACTATCAGCACTTAAT+AGG + chr3.4:16118078-16118097 None:intergenic 30.0%
TCATGAGTTAATGTCCTTAT+GGG + chr3.4:16117509-16117528 None:intergenic 30.0%
TGAAGCTGAAAAAAGAATGA+TGG - chr3.4:16117658-16117677 MS.gene51814:CDS 30.0%
! AACTATAATGGAGTAAGCAA+TGG - chr3.4:16118490-16118509 MS.gene51814:intron 30.0%
! CTGATAGTGATAATGATGAA+TGG - chr3.4:16118086-16118105 MS.gene51814:CDS 30.0%
! GTTTTTAATCTTGTGCAGTT+TGG - chr3.4:16117162-16117181 MS.gene51814:CDS 30.0%
!! ATCTTGCTCTAAAAGTAAGA+TGG - chr3.4:16118573-16118592 MS.gene51814:CDS 30.0%
AATAATTCCATCTCAGGCAT+AGG + chr3.4:16117698-16117717 None:intergenic 35.0%
AGGCTAAATAATTCCATCTC+AGG + chr3.4:16117704-16117723 None:intergenic 35.0%
AGTTCCAGAAATTCTTGTTG+AGG + chr3.4:16117955-16117974 None:intergenic 35.0%
ATAATTCCATCTCAGGCATA+GGG + chr3.4:16117697-16117716 None:intergenic 35.0%
CAATGAATTTCTCAATCCCA+AGG + chr3.4:16117835-16117854 None:intergenic 35.0%
CAGATTCAAACCTCAATGTT+TGG - chr3.4:16117627-16117646 MS.gene51814:CDS 35.0%
CATAAGGACATTAACTCATG+AGG - chr3.4:16117508-16117527 MS.gene51814:CDS 35.0%
CTCATGAGTTAATGTCCTTA+TGG + chr3.4:16117510-16117529 None:intergenic 35.0%
GTTCCAGAAATTCTTGTTGA+GGG + chr3.4:16117954-16117973 None:intergenic 35.0%
TACATGTAGCATGATAGAAG+AGG - chr3.4:16118606-16118625 MS.gene51814:CDS 35.0%
TCTTCTATCATGCTACATGT+AGG + chr3.4:16118607-16118626 None:intergenic 35.0%
TGGAAAAAGGGAAGATGTAT+AGG + chr3.4:16117440-16117459 None:intergenic 35.0%
! ACTGAAGTACTCATGGAAAA+AGG + chr3.4:16117453-16117472 None:intergenic 35.0%
! AGCATGATAGAAGAGGTTTT+TGG - chr3.4:16118613-16118632 MS.gene51814:CDS 35.0%
! AGTGATAATGATGAATGGCA+AGG - chr3.4:16118091-16118110 MS.gene51814:CDS 35.0%
! CGTTCTGGACTGAAATATAT+TGG + chr3.4:16117485-16117504 None:intergenic 35.0%
! CTGAAGTACTCATGGAAAAA+GGG + chr3.4:16117452-16117471 None:intergenic 35.0%
! CTTTTCCAACTTCATCATCA+AGG + chr3.4:16117724-16117743 None:intergenic 35.0%
! TTTTCCTTCACGAAGCAAAA+AGG - chr3.4:16117988-16118007 MS.gene51814:CDS 35.0%
!! ATAGAAGAGGTTTTTGGAGA+TGG - chr3.4:16118619-16118638 MS.gene51814:CDS 35.0%
!! CTTGATGATGAAGTTGGAAA+AGG - chr3.4:16117722-16117741 MS.gene51814:CDS 35.0%
!! CTTTTTCATCCCAAACATGT+TGG + chr3.4:16118381-16118400 None:intergenic 35.0%
!! TTTAGCCTTGATGATGAAGT+TGG - chr3.4:16117716-16117735 MS.gene51814:CDS 35.0%
AAATTCTTGTTGAGGGATGC+TGG + chr3.4:16117947-16117966 None:intergenic 40.0%
AGAATCCTCATCTTCCTCAT+GGG + chr3.4:16118140-16118159 None:intergenic 40.0%
AGGAGAATGTTCAAGGAGTA+TGG + chr3.4:16117543-16117562 None:intergenic 40.0%
ATAGAGGAAGGATATGCACA+AGG - chr3.4:16117272-16117291 MS.gene51814:CDS 40.0%
ATCACCATCAATGTTCCTCT+TGG + chr3.4:16118293-16118312 None:intergenic 40.0%
ATGAGTACTTCAGTCCAGAA+CGG - chr3.4:16117459-16117478 MS.gene51814:CDS 40.0%
CACTATCAGCACTTAATAGG+TGG + chr3.4:16118075-16118094 None:intergenic 40.0%
CATACCAAGAGGAACATTGA+TGG - chr3.4:16118286-16118305 MS.gene51814:CDS 40.0%
CATCCCTCAACAAGAATTTC+TGG - chr3.4:16117948-16117967 MS.gene51814:CDS 40.0%
CCTCTAAGTGATCATCATTG+CGG + chr3.4:16118210-16118229 None:intergenic 40.0%
CTGAAATATATTGGCCGTTC+TGG + chr3.4:16117476-16117495 None:intergenic 40.0%
CTTGATATGCATCACTCTAG+TGG - chr3.4:16118328-16118347 MS.gene51814:CDS 40.0%
GCTTCGTGAAGGAAAAACAA+TGG + chr3.4:16117984-16118003 None:intergenic 40.0%
GTTAACGGTAGAAAATCGCT+GGG + chr3.4:16117078-16117097 None:intergenic 40.0%
TAAGCAATGGTTACAGCCAA+GGG - chr3.4:16118503-16118522 MS.gene51814:intron 40.0%
TAGGTATTCCTGCTTCTACT+TGG - chr3.4:16117372-16117391 MS.gene51814:CDS 40.0%
TATTATCCCTATGCCTGAGA+TGG - chr3.4:16117688-16117707 MS.gene51814:CDS 40.0%
TCAAACCTCAATGTTTGGGA+TGG - chr3.4:16117632-16117651 MS.gene51814:CDS 40.0%
TGTTAACGGTAGAAAATCGC+TGG + chr3.4:16117079-16117098 None:intergenic 40.0%
TTAGAGCAAGATACAAAGCC+AGG + chr3.4:16118565-16118584 None:intergenic 40.0%
TTCATTGAATTGGGGTTTGC+TGG - chr3.4:16117848-16117867 MS.gene51814:CDS 40.0%
! AAACCTCAATGTTTGGGATG+GGG - chr3.4:16117634-16117653 MS.gene51814:CDS 40.0%
! ATCATCTTCAGAAGTGCAAC+TGG + chr3.4:16117402-16117421 None:intergenic 40.0%
! ATCTCCTTTTTGCTTCGTGA+AGG + chr3.4:16117995-16118014 None:intergenic 40.0%
! CAAACCTCAATGTTTGGGAT+GGG - chr3.4:16117633-16117652 MS.gene51814:CDS 40.0%
! GATGTATAGGCTGTTCTGAA+CGG + chr3.4:16117427-16117446 None:intergenic 40.0%
! GTTCAAGGAGTATGGAATAG+AGG + chr3.4:16117535-16117554 None:intergenic 40.0%
AAGAACTGATTGTAGCTGCG+AGG - chr3.4:16117745-16117764 MS.gene51814:CDS 45.0%
AATGTCCTTATGGGTCGTTC+TGG + chr3.4:16117500-16117519 None:intergenic 45.0%
ACCTGAAGTCTTGGCCAAAT+GGG + chr3.4:16117133-16117152 None:intergenic 45.0%
AGAGTGGGAATGGTGATCAT+TGG - chr3.4:16118461-16118480 MS.gene51814:intron 45.0%
AGCATCTCCTCAGCATCAAA+AGG + chr3.4:16117021-16117040 None:intergenic 45.0%
AGTGGGAATGGTGATCATTG+GGG - chr3.4:16118463-16118482 MS.gene51814:intron 45.0%
ATCAAGCTGATGTTCCTGCA+TGG - chr3.4:16117591-16117610 MS.gene51814:CDS 45.0%
ATCCCAAACATGTTGGTCCT+GGG + chr3.4:16118374-16118393 None:intergenic 45.0%
ATGACATGGGAGTTGCTTCA+AGG - chr3.4:16118425-16118444 MS.gene51814:intron 45.0%
ATTTGGCCAAGACTTCAGGT+GGG - chr3.4:16117133-16117152 MS.gene51814:CDS 45.0%
CAATGAAGTTGCTACCCATG+AGG - chr3.4:16118123-16118142 MS.gene51814:CDS 45.0%
CAGAATCCTCATCTTCCTCA+TGG + chr3.4:16118141-16118160 None:intergenic 45.0%
CATTGGGGCAGCAACTATAA+TGG - chr3.4:16118478-16118497 MS.gene51814:intron 45.0%
CCATACACGTCACATGACAT+GGG - chr3.4:16118412-16118431 MS.gene51814:intron 45.0%
CCGCAATGATGATCACTTAG+AGG - chr3.4:16118207-16118226 MS.gene51814:CDS 45.0%
CTCAGGCATAGGGATAATAC+AGG + chr3.4:16117687-16117706 None:intergenic 45.0%
GAAGCAGGAATACCTATCAC+AGG + chr3.4:16117368-16117387 None:intergenic 45.0%
GAGAACAAGTGGCTCAAAAG+TGG - chr3.4:16117876-16117895 MS.gene51814:CDS 45.0%
GAGTGGGAATGGTGATCATT+GGG - chr3.4:16118462-16118481 MS.gene51814:intron 45.0%
GTAAGCAATGGTTACAGCCA+AGG - chr3.4:16118502-16118521 MS.gene51814:intron 45.0%
TAAACTCCCACCTGAAGTCT+TGG + chr3.4:16117142-16117161 None:intergenic 45.0%
TCAAGCTGATGTTCCTGCAT+GGG - chr3.4:16117592-16117611 MS.gene51814:CDS 45.0%
TCCATACACGTCACATGACA+TGG - chr3.4:16118411-16118430 MS.gene51814:intron 45.0%
TGACATGGGAGTTGCTTCAA+GGG - chr3.4:16118426-16118445 MS.gene51814:intron 45.0%
TGATCAGCTCCAACTGATAC+AGG + chr3.4:16117572-16117591 None:intergenic 45.0%
TGATGATTGCGACACCCATT+TGG - chr3.4:16117116-16117135 MS.gene51814:CDS 45.0%
! ATCTTCAGAAGTGCAACTGG+TGG + chr3.4:16117399-16117418 None:intergenic 45.0%
! GAAACGTCCTTTTGATGCTG+AGG - chr3.4:16117011-16117030 MS.gene51814:CDS 45.0%
! GTTCTGGACTGAAGTACTCA+TGG + chr3.4:16117460-16117479 None:intergenic 45.0%
! TCTTCAGAAGTGCAACTGGT+GGG + chr3.4:16117398-16117417 None:intergenic 45.0%
! TTCCTGCATGGGGTTTTTCT+GGG - chr3.4:16117603-16117622 MS.gene51814:CDS 45.0%
!! AGGTTTTTGGAGATGGACGA+AGG - chr3.4:16118626-16118645 MS.gene51814:CDS 45.0%
!! CTTGCTGTTGAAACCTGTGA+TGG - chr3.4:16117317-16117336 MS.gene51814:CDS 45.0%
AAGCCCAGGACCAACATGTT+TGG - chr3.4:16118368-16118387 MS.gene51814:CDS 50.0%
AATGCTCCAGCACATACCCT+TGG + chr3.4:16118522-16118541 None:intergenic 50.0%
ACCAAGGTGAAGAGTGGGAA+TGG - chr3.4:16118451-16118470 MS.gene51814:intron 50.0%
ACCATTCCCACTCTTCACCT+TGG + chr3.4:16118455-16118474 None:intergenic 50.0%
ACCCATTTGGCCAAGACTTC+AGG - chr3.4:16117129-16117148 MS.gene51814:CDS 50.0%
AGCCCAGGACCAACATGTTT+GGG - chr3.4:16118369-16118388 MS.gene51814:CDS 50.0%
AGTTGCTTCAAGGGAGACCA+AGG - chr3.4:16118435-16118454 MS.gene51814:intron 50.0%
CAAGCTGATGTTCCTGCATG+GGG - chr3.4:16117593-16117612 MS.gene51814:CDS 50.0%
CACCTGAAGTCTTGGCCAAA+TGG + chr3.4:16117134-16117153 None:intergenic 50.0%
CATCCCAAACATGTTGGTCC+TGG + chr3.4:16118375-16118394 None:intergenic 50.0%
CATCCCCATCCCAAACATTG+AGG + chr3.4:16117640-16117659 None:intergenic 50.0%
CATTTGGCCAAGACTTCAGG+TGG - chr3.4:16117132-16117151 MS.gene51814:CDS 50.0%
CCCATGTCATGTGACGTGTA+TGG + chr3.4:16118415-16118434 None:intergenic 50.0%
CCTGGGCTTGAATCAGATGA+GGG + chr3.4:16118357-16118376 None:intergenic 50.0%
CTGGGCTTGAATCAGATGAG+GGG + chr3.4:16118356-16118375 None:intergenic 50.0%
GAGGAAGGATATGCACAAGG+TGG - chr3.4:16117275-16117294 MS.gene51814:CDS 50.0%
GCTTGCGAGGAGAATGTTCA+AGG + chr3.4:16117550-16117569 None:intergenic 50.0%
TCAGTCCAGAACGACCCATA+AGG - chr3.4:16117492-16117511 MS.gene51814:CDS 50.0%
TCCTGGGCTTGAATCAGATG+AGG + chr3.4:16118358-16118377 None:intergenic 50.0%
TGATGCTGAGGAGATGCTTG+AGG - chr3.4:16117023-16117042 MS.gene51814:CDS 50.0%
TGCTACCCATGAGGAAGATG+AGG - chr3.4:16118132-16118151 MS.gene51814:CDS 50.0%
TTCAAACACCCGAAGCATGC+AGG - chr3.4:16117051-16117070 MS.gene51814:CDS 50.0%
! GTTCCTGCATGGGGTTTTTC+TGG - chr3.4:16117602-16117621 MS.gene51814:CDS 50.0%
! TGGGTGTCGCAATCATCATC+AGG + chr3.4:16117114-16117133 None:intergenic 50.0%
! TTACAGCCAAGGGTATGTGC+TGG - chr3.4:16118513-16118532 MS.gene51814:intron 50.0%
!! ACCTGTGATGGACATCCTAG+AGG - chr3.4:16117329-16117348 MS.gene51814:CDS 50.0%
!! CCTGTGATGGACATCCTAGA+GGG - chr3.4:16117330-16117349 MS.gene51814:CDS 50.0%
!! CTGTGATGGACATCCTAGAG+GGG - chr3.4:16117331-16117350 MS.gene51814:CDS 50.0%
!! GAATTGGGGTTTGCTGGCAT+GGG - chr3.4:16117854-16117873 MS.gene51814:CDS 50.0%
!! TGAATTGGGGTTTGCTGGCA+TGG - chr3.4:16117853-16117872 MS.gene51814:CDS 50.0%
!! TGGAGCATTGTGATGCACCA+GGG - chr3.4:16118533-16118552 MS.gene51814:CDS 50.0%
AGCATTGTGATGCACCAGGG+TGG - chr3.4:16118536-16118555 MS.gene51814:CDS 55.0%
AGGGAGACCAAGGTGAAGAG+TGG - chr3.4:16118445-16118464 MS.gene51814:intron 55.0%
ATGGACATCCTAGAGGGGCT+GGG - chr3.4:16117336-16117355 MS.gene51814:CDS 55.0%
CCAACTGATACAGGCTTGCG+AGG + chr3.4:16117563-16117582 None:intergenic 55.0%
CCCTCATCTGATTCAAGCCC+AGG - chr3.4:16118354-16118373 MS.gene51814:CDS 55.0%
CCTCGCAAGCCTGTATCAGT+TGG - chr3.4:16117560-16117579 MS.gene51814:CDS 55.0%
GAAAGCGAGCTGAGCAGAAC+AGG - chr3.4:16118047-16118066 MS.gene51814:CDS 55.0%
GACCCAGAAAAACCCCATGC+AGG + chr3.4:16117608-16117627 None:intergenic 55.0%
GATTGTAGCTGCGAGGACAG+TGG - chr3.4:16117752-16117771 MS.gene51814:CDS 55.0%
GCATTGTGATGCACCAGGGT+GGG - chr3.4:16118537-16118556 MS.gene51814:CDS 55.0%
GGGAGACCAAGGTGAAGAGT+GGG - chr3.4:16118446-16118465 MS.gene51814:intron 55.0%
TGCTGGCATGGGAGAACAAG+TGG - chr3.4:16117865-16117884 MS.gene51814:CDS 55.0%
!! CCCTCTAGGATGTCCATCAC+AGG + chr3.4:16117333-16117352 None:intergenic 55.0%
!! CTGGAGCATTGTGATGCACC+AGG - chr3.4:16118532-16118551 MS.gene51814:CDS 55.0%
ACAAAGCCAGGATCCCACCC+TGG + chr3.4:16118553-16118572 None:intergenic 60.0%
GATGGACATCCTAGAGGGGC+TGG - chr3.4:16117335-16117354 MS.gene51814:CDS 60.0%
GCTGGGGACTCTCCTGTGAT+AGG - chr3.4:16117353-16117372 MS.gene51814:CDS 60.0%
TCGCTGGGACCTGCATGCTT+CGG + chr3.4:16117063-16117082 None:intergenic 60.0%
TGGACATCCTAGAGGGGCTG+GGG - chr3.4:16117337-16117356 MS.gene51814:CDS 60.0%
! CTGGTGGGCCAAGTAGAAGC+AGG + chr3.4:16117383-16117402 None:intergenic 60.0%
CGCTGGGACCTGCATGCTTC+GGG + chr3.4:16117062-16117081 None:intergenic 65.0%
GATGCACCAGGGTGGGATCC+TGG - chr3.4:16118544-16118563 MS.gene51814:CDS 65.0%
GGAGAGTCCCCAGCCCCTCT+AGG + chr3.4:16117347-16117366 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 16117003 16118669 16117003 ID=MS.gene51814
chr3.4 mRNA 16117003 16118669 16117003 ID=MS.gene51814.t1;Parent=MS.gene51814
chr3.4 exon 16118522 16118669 16118522 ID=MS.gene51814.t1.exon1;Parent=MS.gene51814.t1
chr3.4 CDS 16118522 16118669 16118522 ID=cds.MS.gene51814.t1;Parent=MS.gene51814.t1
chr3.4 exon 16117003 16118396 16117003 ID=MS.gene51814.t1.exon2;Parent=MS.gene51814.t1
chr3.4 CDS 16117003 16118396 16117003 ID=cds.MS.gene51814.t1;Parent=MS.gene51814.t1
Gene Sequence

>MS.gene51814

ATGGTGCAGAAACGTCCTTTTGATGCTGAGGAGATGCTTGAGGTGTCATTCAAACACCCGAAGCATGCAGGTCCCAGCGATTTTCTACCGTTAACAGAATCTGTTTTTCCTGATGATGATTGCGACACCCATTTGGCCAAGACTTCAGGTGGGAGTTTAGTTTTTAATCTTGTGCAGTTTGGAAATTAAACTATGTAATATACATTTCAAGGAGTTTCGAGTTTGTGATAAATTGTATACTTATATTAAGTTTGTCTACATTGTAATTCATAGAGGAAGGATATGCACAAGGTGGTAGTGATTGTAATGAGAAGCTTGCTGTTGAAACCTGTGATGGACATCCTAGAGGGGCTGGGGACTCTCCTGTGATAGGTATTCCTGCTTCTACTTGGCCCACCAGTTGCACTTCTGAAGATGATCACCGTTCAGAACAGCCTATACATCTTCCCTTTTTCCATGAGTACTTCAGTCCAGAACGGCCAATATATTTCAGTCCAGAACGACCCATAAGGACATTAACTCATGAGGACCTCTATTCCATACTCCTTGAACATTCTCCTCGCAAGCCTGTATCAGTTGGAGCTGATCATCAAGCTGATGTTCCTGCATGGGGTTTTTCTGGGTCAGATTCAAACCTCAATGTTTGGGATGGGGATGAAGCTGAAAAAAGAATGATGGGGACCTGTATTATCCCTATGCCTGAGATGGAATTATTTAGCCTTGATGATGAAGTTGGAAAAGGAAGAACTGATTGTAGCTGCGAGGACAGTGGATCTATGAGATGTGTAAGACAACATATAATGGAAGAGAGAAAAAAACTATTAAAAACCCTTGGGATTGAGAAATTCATTGAATTGGGGTTTGCTGGCATGGGAGAACAAGTGGCTCAAAAGTGGACTCAAGAAGATGAACATCTATTTCACAAGGTAGTCTTCAACAATCCAGCATCCCTCAACAAGAATTTCTGGAACTATCTTTCCATTGTTTTTCCTTCACGAAGCAAAAAGGAGATAGTGAGTTACTACTTTAATGTCTTCATGCTTCGAAAGCGAGCTGAGCAGAACAGGAACCACCTATTAAGTGCTGATAGTGATAATGATGAATGGCAAGGTAGTGACGACAATGAAGTTGCTACCCATGAGGAAGATGAGGATTCTGTTGCTGAGTATCCCATCTATGAAGATGATACTTGTAACAATAATAACCGCAATGATGATCACTTAGAGGATTATGATGATGAGTTTTCTGACGATGAAAATTGTGATGTTAATGGAATATTAGATCATACCAAGAGGAACATTGATGGTGATTCTAAGTATGATTTTCTTGATATGCATCACTCTAGTGGTTCCCCTCATCTGATTCAAGCCCAGGACCAACATGTTTGGGATGAAAAAGTTAAACATGATCCATACACGTCACATGACATGGGAGTTGCTTCAAGGGAGACCAAGGTGAAGAGTGGGAATGGTGATCATTGGGGCAGCAACTATAATGGAGTAAGCAATGGTTACAGCCAAGGGTATGTGCTGGAGCATTGTGATGCACCAGGGTGGGATCCTGGCTTTGTATCTTGCTCTAAAAGTAAGATGGATTTCTTACCTACATGTAGCATGATAGAAGAGGTTTTTGGAGATGGACGAAGGCAAGACATGAGAAGAGCTTGA

Protein sequence

>MS.gene51814.t1

MVQKRPFDAEEMLEVSFKHPKHAGPSDFLPLTESVFPDDDCDTHLAKTSEEGYAQGGSDCNEKLAVETCDGHPRGAGDSPVIGIPASTWPTSCTSEDDHRSEQPIHLPFFHEYFSPERPIYFSPERPIRTLTHEDLYSILLEHSPRKPVSVGADHQADVPAWGFSGSDSNLNVWDGDEAEKRMMGTCIIPMPEMELFSLDDEVGKGRTDCSCEDSGSMRCVRQHIMEERKKLLKTLGIEKFIELGFAGMGEQVAQKWTQEDEHLFHKVVFNNPASLNKNFWNYLSIVFPSRSKKEIVSYYFNVFMLRKRAEQNRNHLLSADSDNDEWQGSDDNEVATHEEDEDSVAEYPIYEDDTCNNNNRNDDHLEDYDDEFSDDENCDVNGILDHTKRNIDGDSKYDFLDMHHSSGSPHLIQAQDQHVWDEKVKHDPYTSHDMGVASRETKVKSGNGDHWGSNYNGVSNGYSQGYVLEHCDAPGWDPGFVSCSKSKMDFLPTCSMIEEVFGDGRRQDMRRA