Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51814.t1 | XP_013459058.1 | 90.5 | 514 | 48 | 1 | 1 | 513 | 1 | 514 | 1.60E-263 | 918.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51814.t1 | Q9LDD4 | 40.0 | 190 | 95 | 5 | 145 | 330 | 370 | 544 | 6.3e-27 | 123.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51814.t1 | A0A072UUQ4 | 90.5 | 514 | 48 | 1 | 1 | 513 | 1 | 514 | 1.1e-263 | 918.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04915 | MS.gene51814 | 0.803886 | 2.81E-49 | -1.69E-46 |
MS.gene04917 | MS.gene51814 | 0.802418 | 5.66E-49 | -1.69E-46 |
MS.gene050359 | MS.gene51814 | 0.804837 | 1.78E-49 | -1.69E-46 |
MS.gene050654 | MS.gene51814 | 0.816618 | 5.04E-52 | -1.69E-46 |
MS.gene051122 | MS.gene51814 | 0.806081 | 9.78E-50 | -1.69E-46 |
MS.gene051184 | MS.gene51814 | 0.812689 | 3.74E-51 | -1.69E-46 |
MS.gene051856 | MS.gene51814 | 0.809096 | 2.24E-50 | -1.69E-46 |
MS.gene052296 | MS.gene51814 | 0.805503 | 1.29E-49 | -1.69E-46 |
MS.gene055311 | MS.gene51814 | 0.802817 | 4.69E-49 | -1.69E-46 |
MS.gene056181 | MS.gene51814 | 0.813714 | 2.23E-51 | -1.69E-46 |
MS.gene057055 | MS.gene51814 | 0.801238 | 9.90E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene51814 | MS.gene95204 | PPI |
MS.gene51814 | MS.gene057919 | PPI |
MS.gene51814 | MS.gene50873 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51814.t1 | MTR_3g023780 | 95.136 | 514 | 24 | 1 | 1 | 513 | 1 | 514 | 0.0 | 989 |
MS.gene51814.t1 | MTR_7g078120 | 38.624 | 189 | 103 | 4 | 140 | 326 | 378 | 555 | 5.21e-31 | 127 |
MS.gene51814.t1 | MTR_7g078120 | 38.624 | 189 | 103 | 4 | 140 | 326 | 378 | 555 | 7.64e-31 | 127 |
MS.gene51814.t1 | MTR_8g098645 | 39.560 | 182 | 97 | 5 | 147 | 326 | 141 | 311 | 2.47e-25 | 107 |
MS.gene51814.t1 | MTR_1g073380 | 37.931 | 203 | 101 | 6 | 132 | 326 | 378 | 563 | 3.12e-25 | 109 |
MS.gene51814.t1 | MTR_8g098635 | 36.224 | 196 | 102 | 7 | 139 | 326 | 82 | 262 | 5.69e-25 | 105 |
MS.gene51814.t1 | MTR_1g073590 | 38.172 | 186 | 90 | 6 | 149 | 326 | 382 | 550 | 2.03e-24 | 107 |
MS.gene51814.t1 | MTR_1g073530 | 38.172 | 186 | 90 | 6 | 149 | 326 | 385 | 553 | 2.07e-24 | 107 |
MS.gene51814.t1 | MTR_8g098635 | 36.224 | 196 | 102 | 7 | 139 | 326 | 165 | 345 | 2.75e-24 | 104 |
MS.gene51814.t1 | MTR_8g098605 | 37.912 | 182 | 100 | 5 | 147 | 326 | 391 | 561 | 6.45e-24 | 105 |
MS.gene51814.t1 | MTR_8g028905 | 34.783 | 184 | 103 | 7 | 149 | 326 | 408 | 580 | 1.74e-22 | 101 |
MS.gene51814.t1 | MTR_7g066890 | 32.778 | 180 | 114 | 5 | 143 | 321 | 188 | 361 | 1.92e-18 | 87.4 |
MS.gene51814.t1 | MTR_7g066890 | 32.778 | 180 | 114 | 5 | 143 | 321 | 290 | 463 | 4.58e-18 | 87.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51814.t1 | AT1G13880 | 36.813 | 364 | 204 | 9 | 4 | 366 | 4 | 342 | 1.84e-62 | 210 |
MS.gene51814.t1 | AT1G13880 | 36.813 | 364 | 204 | 9 | 4 | 366 | 14 | 352 | 2.44e-62 | 210 |
MS.gene51814.t1 | AT1G13880 | 36.538 | 364 | 206 | 9 | 4 | 366 | 4 | 343 | 2.62e-62 | 210 |
MS.gene51814.t1 | AT1G26580 | 44.223 | 251 | 128 | 5 | 114 | 352 | 33 | 283 | 2.17e-61 | 207 |
MS.gene51814.t1 | AT1G26580 | 37.669 | 369 | 193 | 10 | 1 | 352 | 1 | 349 | 4.42e-61 | 208 |
MS.gene51814.t1 | AT1G26580 | 37.669 | 369 | 193 | 10 | 1 | 352 | 1 | 349 | 4.42e-61 | 208 |
MS.gene51814.t1 | AT2G03470 | 48.718 | 195 | 96 | 1 | 134 | 328 | 107 | 297 | 3.48e-59 | 202 |
MS.gene51814.t1 | AT2G03470 | 48.718 | 195 | 96 | 1 | 134 | 328 | 108 | 298 | 3.48e-59 | 202 |
MS.gene51814.t1 | AT4G11400 | 40.000 | 190 | 95 | 5 | 145 | 330 | 370 | 544 | 6.10e-29 | 120 |
MS.gene51814.t1 | AT4G11400 | 40.000 | 190 | 95 | 5 | 145 | 330 | 370 | 544 | 6.10e-29 | 120 |
MS.gene51814.t1 | AT5G04110 | 31.868 | 182 | 115 | 4 | 146 | 325 | 358 | 532 | 1.76e-22 | 101 |
MS.gene51814.t1 | AT5G04110 | 31.868 | 182 | 115 | 4 | 146 | 325 | 358 | 532 | 1.76e-22 | 101 |
MS.gene51814.t1 | AT5G04110 | 31.868 | 182 | 115 | 4 | 146 | 325 | 359 | 533 | 1.77e-22 | 101 |
MS.gene51814.t1 | AT2G46040 | 35.165 | 182 | 99 | 6 | 151 | 326 | 362 | 530 | 7.73e-17 | 84.0 |
MS.gene51814.t1 | AT2G46040 | 35.165 | 182 | 99 | 6 | 151 | 326 | 362 | 530 | 7.73e-17 | 84.0 |
MS.gene51814.t1 | AT2G46040 | 35.165 | 182 | 99 | 6 | 151 | 326 | 376 | 544 | 9.35e-17 | 83.6 |
MS.gene51814.t1 | AT5G04110 | 30.405 | 148 | 100 | 3 | 146 | 291 | 358 | 504 | 2.03e-14 | 76.3 |
Find 137 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTGAAGTACTCATGGAAAA+AGG | 0.244769 | 3.4:+16118200 | None:intergenic |
CATCCCTCAACAAGAATTTC+TGG | 0.247523 | 3.4:-16117702 | MS.gene51814:CDS |
ATTGAGAAATTCATTGAATT+GGG | 0.268674 | 3.4:-16117811 | MS.gene51814:CDS |
CTCATGAGTTAATGTCCTTA+TGG | 0.270357 | 3.4:+16118143 | None:intergenic |
CTGAAATATATTGGCCGTTC+TGG | 0.274949 | 3.4:+16118177 | None:intergenic |
TTCATTGAATTGGGGTTTGC+TGG | 0.296184 | 3.4:-16117802 | MS.gene51814:CDS |
TATCACTATCAGCACTTAAT+AGG | 0.298492 | 3.4:+16117575 | None:intergenic |
CATCCCAAACATGTTGGTCC+TGG | 0.308074 | 3.4:+16117278 | None:intergenic |
GATGAAAATTGTGATGTTAA+TGG | 0.308465 | 3.4:-16117397 | MS.gene51814:CDS |
CAGATTCAAACCTCAATGTT+TGG | 0.315295 | 3.4:-16118023 | MS.gene51814:CDS |
GATTGAGAAATTCATTGAAT+TGG | 0.317579 | 3.4:-16117812 | MS.gene51814:CDS |
CGCTGGGACCTGCATGCTTC+GGG | 0.328924 | 3.4:+16118591 | None:intergenic |
ACAAGTATCATCTTCATAGA+TGG | 0.329130 | 3.4:+16117477 | None:intergenic |
AAGCCCAGGACCAACATGTT+TGG | 0.344788 | 3.4:-16117282 | MS.gene51814:CDS |
TGAATTGGGGTTTGCTGGCA+TGG | 0.361365 | 3.4:-16117797 | MS.gene51814:CDS |
AGCCCAGGACCAACATGTTT+GGG | 0.368080 | 3.4:-16117281 | MS.gene51814:CDS |
AGGAGAATGTTCAAGGAGTA+TGG | 0.375340 | 3.4:+16118110 | None:intergenic |
CGTTCTGGACTGAAATATAT+TGG | 0.377694 | 3.4:+16118168 | None:intergenic |
GCTGGGGACTCTCCTGTGAT+AGG | 0.378845 | 3.4:-16118297 | MS.gene51814:CDS |
TCGCTGGGACCTGCATGCTT+CGG | 0.383524 | 3.4:+16118590 | None:intergenic |
CACCTGAAGTCTTGGCCAAA+TGG | 0.383926 | 3.4:+16118519 | None:intergenic |
CCGCAATGATGATCACTTAG+AGG | 0.384163 | 3.4:-16117443 | MS.gene51814:CDS |
AGATTCAAACCTCAATGTTT+GGG | 0.386204 | 3.4:-16118022 | MS.gene51814:CDS |
CATTGGGGCAGCAACTATAA+TGG | 0.390607 | 3.4:-16117172 | MS.gene51814:CDS |
TAGGTATTCCTGCTTCTACT+TGG | 0.392488 | 3.4:-16118278 | MS.gene51814:CDS |
ACCCATTTGGCCAAGACTTC+AGG | 0.405780 | 3.4:-16118521 | MS.gene51814:intron |
GAGTGGGAATGGTGATCATT+GGG | 0.407252 | 3.4:-16117188 | MS.gene51814:CDS |
AAATTCTTGTTGAGGGATGC+TGG | 0.410628 | 3.4:+16117706 | None:intergenic |
GAAAGCGAGCTGAGCAGAAC+AGG | 0.412737 | 3.4:-16117603 | MS.gene51814:CDS |
ATGTGTAAGACAACATATAA+TGG | 0.417704 | 3.4:-16117866 | MS.gene51814:CDS |
TTTAGCCTTGATGATGAAGT+TGG | 0.419143 | 3.4:-16117934 | MS.gene51814:CDS |
TCATGAGTTAATGTCCTTAT+GGG | 0.424228 | 3.4:+16118144 | None:intergenic |
AATGTCCTTATGGGTCGTTC+TGG | 0.428131 | 3.4:+16118153 | None:intergenic |
ATCCCAAACATGTTGGTCCT+GGG | 0.430334 | 3.4:+16117279 | None:intergenic |
GATGCACCAGGGTGGGATCC+TGG | 0.430640 | 3.4:-16117106 | MS.gene51814:CDS |
ATGGACATCCTAGAGGGGCT+GGG | 0.451477 | 3.4:-16118314 | MS.gene51814:CDS |
AGAGTGGGAATGGTGATCAT+TGG | 0.452381 | 3.4:-16117189 | MS.gene51814:CDS |
ATCATCTTCAGAAGTGCAAC+TGG | 0.452483 | 3.4:+16118251 | None:intergenic |
TGATCAGCTCCAACTGATAC+AGG | 0.454985 | 3.4:+16118081 | None:intergenic |
GATGGACATCCTAGAGGGGC+TGG | 0.457386 | 3.4:-16118315 | MS.gene51814:CDS |
CCCTCATCTGATTCAAGCCC+AGG | 0.459996 | 3.4:-16117296 | MS.gene51814:CDS |
AGGCTAAATAATTCCATCTC+AGG | 0.465214 | 3.4:+16117949 | None:intergenic |
GTTCCAGAAATTCTTGTTGA+GGG | 0.466806 | 3.4:+16117699 | None:intergenic |
ACCTGAAGTCTTGGCCAAAT+GGG | 0.467786 | 3.4:+16118520 | None:intergenic |
CTTGATGATGAAGTTGGAAA+AGG | 0.469243 | 3.4:-16117928 | MS.gene51814:CDS |
TAAACTCCCACCTGAAGTCT+TGG | 0.475135 | 3.4:+16118511 | None:intergenic |
ATCTTGCTCTAAAAGTAAGA+TGG | 0.482487 | 3.4:-16117077 | MS.gene51814:CDS |
TGATGATTGCGACACCCATT+TGG | 0.482669 | 3.4:-16118534 | MS.gene51814:CDS |
AGCATCTCCTCAGCATCAAA+AGG | 0.482810 | 3.4:+16118632 | None:intergenic |
CAATGAATTTCTCAATCCCA+AGG | 0.484694 | 3.4:+16117818 | None:intergenic |
CTGGAGCATTGTGATGCACC+AGG | 0.488708 | 3.4:-16117118 | MS.gene51814:CDS |
CAGAATCCTCATCTTCCTCA+TGG | 0.490672 | 3.4:+16117512 | None:intergenic |
CATCCCCATCCCAAACATTG+AGG | 0.498295 | 3.4:+16118013 | None:intergenic |
ATCACCATCAATGTTCCTCT+TGG | 0.498646 | 3.4:+16117360 | None:intergenic |
CAAACCTCAATGTTTGGGAT+GGG | 0.499908 | 3.4:-16118017 | MS.gene51814:CDS |
CTTGATATGCATCACTCTAG+TGG | 0.500136 | 3.4:-16117322 | MS.gene51814:CDS |
TGGGTGTCGCAATCATCATC+AGG | 0.505398 | 3.4:+16118539 | None:intergenic |
GAATTGGGGTTTGCTGGCAT+GGG | 0.506212 | 3.4:-16117796 | MS.gene51814:CDS |
ATGACATGGGAGTTGCTTCA+AGG | 0.507286 | 3.4:-16117225 | MS.gene51814:CDS |
TGTTAACGGTAGAAAATCGC+TGG | 0.507449 | 3.4:+16118574 | None:intergenic |
TCAAGCTGATGTTCCTGCAT+GGG | 0.508514 | 3.4:-16118058 | MS.gene51814:CDS |
TGGACATCCTAGAGGGGCTG+GGG | 0.508901 | 3.4:-16118313 | MS.gene51814:CDS |
AATAATTCCATCTCAGGCAT+AGG | 0.513120 | 3.4:+16117955 | None:intergenic |
CAAGTATCATCTTCATAGAT+GGG | 0.519904 | 3.4:+16117478 | None:intergenic |
TTGAGAAATTCATTGAATTG+GGG | 0.521028 | 3.4:-16117810 | MS.gene51814:CDS |
TCCATACACGTCACATGACA+TGG | 0.523040 | 3.4:-16117239 | MS.gene51814:CDS |
TCAAACCTCAATGTTTGGGA+TGG | 0.524692 | 3.4:-16118018 | MS.gene51814:CDS |
TTAGAGCAAGATACAAAGCC+AGG | 0.525570 | 3.4:+16117088 | None:intergenic |
ACCATTCCCACTCTTCACCT+TGG | 0.525767 | 3.4:+16117198 | None:intergenic |
TGATGCTGAGGAGATGCTTG+AGG | 0.526167 | 3.4:-16118627 | MS.gene51814:CDS |
CCCTCTAGGATGTCCATCAC+AGG | 0.527463 | 3.4:+16118320 | None:intergenic |
CCCATGTCATGTGACGTGTA+TGG | 0.528843 | 3.4:+16117238 | None:intergenic |
CCTCGCAAGCCTGTATCAGT+TGG | 0.530589 | 3.4:-16118090 | MS.gene51814:CDS |
TGACATGGGAGTTGCTTCAA+GGG | 0.532666 | 3.4:-16117224 | MS.gene51814:CDS |
CAAGCTGATGTTCCTGCATG+GGG | 0.538451 | 3.4:-16118057 | MS.gene51814:CDS |
TATTATCCCTATGCCTGAGA+TGG | 0.538511 | 3.4:-16117962 | MS.gene51814:CDS |
CTCAGGCATAGGGATAATAC+AGG | 0.539552 | 3.4:+16117966 | None:intergenic |
ATAATTCCATCTCAGGCATA+GGG | 0.542120 | 3.4:+16117956 | None:intergenic |
AAACCTCAATGTTTGGGATG+GGG | 0.542867 | 3.4:-16118016 | MS.gene51814:CDS |
CATACCAAGAGGAACATTGA+TGG | 0.543048 | 3.4:-16117364 | MS.gene51814:CDS |
GGAGAGTCCCCAGCCCCTCT+AGG | 0.543130 | 3.4:+16118306 | None:intergenic |
ACCAAGGTGAAGAGTGGGAA+TGG | 0.543330 | 3.4:-16117199 | MS.gene51814:CDS |
TTCAAACACCCGAAGCATGC+AGG | 0.544378 | 3.4:-16118599 | MS.gene51814:CDS |
GAGAACAAGTGGCTCAAAAG+TGG | 0.552554 | 3.4:-16117774 | MS.gene51814:CDS |
GCTTGCGAGGAGAATGTTCA+AGG | 0.553211 | 3.4:+16118103 | None:intergenic |
TCAGTCCAGAACGACCCATA+AGG | 0.556681 | 3.4:-16118158 | MS.gene51814:CDS |
AGTTCCAGAAATTCTTGTTG+AGG | 0.557435 | 3.4:+16117698 | None:intergenic |
ATCAAGCTGATGTTCCTGCA+TGG | 0.557524 | 3.4:-16118059 | MS.gene51814:CDS |
GTTCTGGACTGAAGTACTCA+TGG | 0.558958 | 3.4:+16118193 | None:intergenic |
GAAGCAGGAATACCTATCAC+AGG | 0.558967 | 3.4:+16118285 | None:intergenic |
GTAAGCAATGGTTACAGCCA+AGG | 0.561471 | 3.4:-16117148 | MS.gene51814:CDS |
GTTCAAGGAGTATGGAATAG+AGG | 0.561760 | 3.4:+16118118 | None:intergenic |
TGCTGGCATGGGAGAACAAG+TGG | 0.566560 | 3.4:-16117785 | MS.gene51814:CDS |
CTGGTGGGCCAAGTAGAAGC+AGG | 0.570184 | 3.4:+16118270 | None:intergenic |
CACTATCAGCACTTAATAGG+TGG | 0.573148 | 3.4:+16117578 | None:intergenic |
AACTATAATGGAGTAAGCAA+TGG | 0.575552 | 3.4:-16117160 | MS.gene51814:CDS |
TTACAGCCAAGGGTATGTGC+TGG | 0.575897 | 3.4:-16117137 | MS.gene51814:CDS |
CTTGCTGTTGAAACCTGTGA+TGG | 0.582868 | 3.4:-16118333 | MS.gene51814:CDS |
AATGCTCCAGCACATACCCT+TGG | 0.585409 | 3.4:+16117131 | None:intergenic |
TGCTACCCATGAGGAAGATG+AGG | 0.586723 | 3.4:-16117518 | MS.gene51814:CDS |
AGGGAGACCAAGGTGAAGAG+TGG | 0.588865 | 3.4:-16117205 | MS.gene51814:CDS |
ATCTTCAGAAGTGCAACTGG+TGG | 0.589388 | 3.4:+16118254 | None:intergenic |
TCTTCTATCATGCTACATGT+AGG | 0.594709 | 3.4:+16117046 | None:intergenic |
CCTGTGATGGACATCCTAGA+GGG | 0.599466 | 3.4:-16118320 | MS.gene51814:CDS |
GGGAGACCAAGGTGAAGAGT+GGG | 0.600028 | 3.4:-16117204 | MS.gene51814:CDS |
AGAATCCTCATCTTCCTCAT+GGG | 0.600761 | 3.4:+16117513 | None:intergenic |
CTGATAGTGATAATGATGAA+TGG | 0.603537 | 3.4:-16117564 | MS.gene51814:CDS |
TCCTGGGCTTGAATCAGATG+AGG | 0.606024 | 3.4:+16117295 | None:intergenic |
CCTGGGCTTGAATCAGATGA+GGG | 0.606854 | 3.4:+16117296 | None:intergenic |
AATGAATTTCTCAATCCCAA+GGG | 0.607074 | 3.4:+16117819 | None:intergenic |
TAAGCAATGGTTACAGCCAA+GGG | 0.614655 | 3.4:-16117147 | MS.gene51814:CDS |
GATGTATAGGCTGTTCTGAA+CGG | 0.621550 | 3.4:+16118226 | None:intergenic |
GATTGTAGCTGCGAGGACAG+TGG | 0.623911 | 3.4:-16117898 | MS.gene51814:CDS |
AGTTGCTTCAAGGGAGACCA+AGG | 0.631504 | 3.4:-16117215 | MS.gene51814:CDS |
CCAACTGATACAGGCTTGCG+AGG | 0.632606 | 3.4:+16118090 | None:intergenic |
CATAAGGACATTAACTCATG+AGG | 0.642135 | 3.4:-16118142 | MS.gene51814:CDS |
TCTTCAGAAGTGCAACTGGT+GGG | 0.643393 | 3.4:+16118255 | None:intergenic |
GCATTGTGATGCACCAGGGT+GGG | 0.646215 | 3.4:-16117113 | MS.gene51814:CDS |
GTTAACGGTAGAAAATCGCT+GGG | 0.649982 | 3.4:+16118575 | None:intergenic |
ACAAAGCCAGGATCCCACCC+TGG | 0.650732 | 3.4:+16117100 | None:intergenic |
TACATGTAGCATGATAGAAG+AGG | 0.651894 | 3.4:-16117044 | MS.gene51814:CDS |
CCATACACGTCACATGACAT+GGG | 0.663767 | 3.4:-16117238 | MS.gene51814:CDS |
ATGAGTACTTCAGTCCAGAA+CGG | 0.667987 | 3.4:-16118191 | MS.gene51814:CDS |
CCTCTAAGTGATCATCATTG+CGG | 0.670801 | 3.4:+16117443 | None:intergenic |
ACCTGTGATGGACATCCTAG+AGG | 0.674785 | 3.4:-16118321 | MS.gene51814:CDS |
TGGAGCATTGTGATGCACCA+GGG | 0.681363 | 3.4:-16117117 | MS.gene51814:CDS |
CTGGGCTTGAATCAGATGAG+GGG | 0.684489 | 3.4:+16117297 | None:intergenic |
AGTGGGAATGGTGATCATTG+GGG | 0.687140 | 3.4:-16117187 | MS.gene51814:CDS |
AGATGAACATCTATTTCACA+AGG | 0.692555 | 3.4:-16117743 | MS.gene51814:CDS |
CAATGAAGTTGCTACCCATG+AGG | 0.694283 | 3.4:-16117527 | MS.gene51814:CDS |
AGCATTGTGATGCACCAGGG+TGG | 0.699405 | 3.4:-16117114 | MS.gene51814:CDS |
CTGTGATGGACATCCTAGAG+GGG | 0.704316 | 3.4:-16118319 | MS.gene51814:CDS |
GAATATTAGATCATACCAAG+AGG | 0.712614 | 3.4:-16117375 | MS.gene51814:CDS |
AGTGATAATGATGAATGGCA+AGG | 0.715180 | 3.4:-16117559 | MS.gene51814:CDS |
ATAGAGGAAGGATATGCACA+AGG | 0.716188 | 3.4:-16118378 | MS.gene51814:intron |
AAGAACTGATTGTAGCTGCG+AGG | 0.720002 | 3.4:-16117905 | MS.gene51814:CDS |
GAGGAAGGATATGCACAAGG+TGG | 0.730040 | 3.4:-16118375 | MS.gene51814:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAACTATTAAAAACCCT+TGG | - | chr3.4:16117815-16117834 | MS.gene51814:CDS | 20.0% |
!! | AAAAACTATTAAAAACCCTT+GGG | - | chr3.4:16117816-16117835 | MS.gene51814:CDS | 20.0% |
!! | ACTATGTAATATACATTTCA+AGG | - | chr3.4:16117192-16117211 | MS.gene51814:CDS | 20.0% |
!! | ATTGAGAAATTCATTGAATT+GGG | - | chr3.4:16117839-16117858 | MS.gene51814:CDS | 20.0% |
! | ATGTGTAAGACAACATATAA+TGG | - | chr3.4:16117784-16117803 | MS.gene51814:CDS | 25.0% |
! | GATGAAAATTGTGATGTTAA+TGG | - | chr3.4:16118253-16118272 | MS.gene51814:CDS | 25.0% |
! | GATTGAGAAATTCATTGAAT+TGG | - | chr3.4:16117838-16117857 | MS.gene51814:CDS | 25.0% |
! | TTGAGAAATTCATTGAATTG+GGG | - | chr3.4:16117840-16117859 | MS.gene51814:CDS | 25.0% |
AAGCTGAAAAAAGAATGATG+GGG | - | chr3.4:16117660-16117679 | MS.gene51814:CDS | 30.0% | |
AATGAATTTCTCAATCCCAA+GGG | + | chr3.4:16117834-16117853 | None:intergenic | 30.0% | |
ACAAGTATCATCTTCATAGA+TGG | + | chr3.4:16118176-16118195 | None:intergenic | 30.0% | |
ACATTGTAATTCATAGAGGA+AGG | - | chr3.4:16117260-16117279 | MS.gene51814:CDS | 30.0% | |
AGATGAACATCTATTTCACA+AGG | - | chr3.4:16117907-16117926 | MS.gene51814:CDS | 30.0% | |
AGATTCAAACCTCAATGTTT+GGG | - | chr3.4:16117628-16117647 | MS.gene51814:CDS | 30.0% | |
CAAGTATCATCTTCATAGAT+GGG | + | chr3.4:16118175-16118194 | None:intergenic | 30.0% | |
GAAGCTGAAAAAAGAATGAT+GGG | - | chr3.4:16117659-16117678 | MS.gene51814:CDS | 30.0% | |
GAATATTAGATCATACCAAG+AGG | - | chr3.4:16118275-16118294 | MS.gene51814:CDS | 30.0% | |
GGAAAAACAGATTCTGTTAA+CGG | + | chr3.4:16117093-16117112 | None:intergenic | 30.0% | |
GTCTACATTGTAATTCATAG+AGG | - | chr3.4:16117256-16117275 | MS.gene51814:CDS | 30.0% | |
TATCACTATCAGCACTTAAT+AGG | + | chr3.4:16118078-16118097 | None:intergenic | 30.0% | |
TCATGAGTTAATGTCCTTAT+GGG | + | chr3.4:16117509-16117528 | None:intergenic | 30.0% | |
TGAAGCTGAAAAAAGAATGA+TGG | - | chr3.4:16117658-16117677 | MS.gene51814:CDS | 30.0% | |
! | AACTATAATGGAGTAAGCAA+TGG | - | chr3.4:16118490-16118509 | MS.gene51814:intron | 30.0% |
! | CTGATAGTGATAATGATGAA+TGG | - | chr3.4:16118086-16118105 | MS.gene51814:CDS | 30.0% |
! | GTTTTTAATCTTGTGCAGTT+TGG | - | chr3.4:16117162-16117181 | MS.gene51814:CDS | 30.0% |
!! | ATCTTGCTCTAAAAGTAAGA+TGG | - | chr3.4:16118573-16118592 | MS.gene51814:CDS | 30.0% |
AATAATTCCATCTCAGGCAT+AGG | + | chr3.4:16117698-16117717 | None:intergenic | 35.0% | |
AGGCTAAATAATTCCATCTC+AGG | + | chr3.4:16117704-16117723 | None:intergenic | 35.0% | |
AGTTCCAGAAATTCTTGTTG+AGG | + | chr3.4:16117955-16117974 | None:intergenic | 35.0% | |
ATAATTCCATCTCAGGCATA+GGG | + | chr3.4:16117697-16117716 | None:intergenic | 35.0% | |
CAATGAATTTCTCAATCCCA+AGG | + | chr3.4:16117835-16117854 | None:intergenic | 35.0% | |
CAGATTCAAACCTCAATGTT+TGG | - | chr3.4:16117627-16117646 | MS.gene51814:CDS | 35.0% | |
CATAAGGACATTAACTCATG+AGG | - | chr3.4:16117508-16117527 | MS.gene51814:CDS | 35.0% | |
CTCATGAGTTAATGTCCTTA+TGG | + | chr3.4:16117510-16117529 | None:intergenic | 35.0% | |
GTTCCAGAAATTCTTGTTGA+GGG | + | chr3.4:16117954-16117973 | None:intergenic | 35.0% | |
TACATGTAGCATGATAGAAG+AGG | - | chr3.4:16118606-16118625 | MS.gene51814:CDS | 35.0% | |
TCTTCTATCATGCTACATGT+AGG | + | chr3.4:16118607-16118626 | None:intergenic | 35.0% | |
TGGAAAAAGGGAAGATGTAT+AGG | + | chr3.4:16117440-16117459 | None:intergenic | 35.0% | |
! | ACTGAAGTACTCATGGAAAA+AGG | + | chr3.4:16117453-16117472 | None:intergenic | 35.0% |
! | AGCATGATAGAAGAGGTTTT+TGG | - | chr3.4:16118613-16118632 | MS.gene51814:CDS | 35.0% |
! | AGTGATAATGATGAATGGCA+AGG | - | chr3.4:16118091-16118110 | MS.gene51814:CDS | 35.0% |
! | CGTTCTGGACTGAAATATAT+TGG | + | chr3.4:16117485-16117504 | None:intergenic | 35.0% |
! | CTGAAGTACTCATGGAAAAA+GGG | + | chr3.4:16117452-16117471 | None:intergenic | 35.0% |
! | CTTTTCCAACTTCATCATCA+AGG | + | chr3.4:16117724-16117743 | None:intergenic | 35.0% |
! | TTTTCCTTCACGAAGCAAAA+AGG | - | chr3.4:16117988-16118007 | MS.gene51814:CDS | 35.0% |
!! | ATAGAAGAGGTTTTTGGAGA+TGG | - | chr3.4:16118619-16118638 | MS.gene51814:CDS | 35.0% |
!! | CTTGATGATGAAGTTGGAAA+AGG | - | chr3.4:16117722-16117741 | MS.gene51814:CDS | 35.0% |
!! | CTTTTTCATCCCAAACATGT+TGG | + | chr3.4:16118381-16118400 | None:intergenic | 35.0% |
!! | TTTAGCCTTGATGATGAAGT+TGG | - | chr3.4:16117716-16117735 | MS.gene51814:CDS | 35.0% |
AAATTCTTGTTGAGGGATGC+TGG | + | chr3.4:16117947-16117966 | None:intergenic | 40.0% | |
AGAATCCTCATCTTCCTCAT+GGG | + | chr3.4:16118140-16118159 | None:intergenic | 40.0% | |
AGGAGAATGTTCAAGGAGTA+TGG | + | chr3.4:16117543-16117562 | None:intergenic | 40.0% | |
ATAGAGGAAGGATATGCACA+AGG | - | chr3.4:16117272-16117291 | MS.gene51814:CDS | 40.0% | |
ATCACCATCAATGTTCCTCT+TGG | + | chr3.4:16118293-16118312 | None:intergenic | 40.0% | |
ATGAGTACTTCAGTCCAGAA+CGG | - | chr3.4:16117459-16117478 | MS.gene51814:CDS | 40.0% | |
CACTATCAGCACTTAATAGG+TGG | + | chr3.4:16118075-16118094 | None:intergenic | 40.0% | |
CATACCAAGAGGAACATTGA+TGG | - | chr3.4:16118286-16118305 | MS.gene51814:CDS | 40.0% | |
CATCCCTCAACAAGAATTTC+TGG | - | chr3.4:16117948-16117967 | MS.gene51814:CDS | 40.0% | |
CCTCTAAGTGATCATCATTG+CGG | + | chr3.4:16118210-16118229 | None:intergenic | 40.0% | |
CTGAAATATATTGGCCGTTC+TGG | + | chr3.4:16117476-16117495 | None:intergenic | 40.0% | |
CTTGATATGCATCACTCTAG+TGG | - | chr3.4:16118328-16118347 | MS.gene51814:CDS | 40.0% | |
GCTTCGTGAAGGAAAAACAA+TGG | + | chr3.4:16117984-16118003 | None:intergenic | 40.0% | |
GTTAACGGTAGAAAATCGCT+GGG | + | chr3.4:16117078-16117097 | None:intergenic | 40.0% | |
TAAGCAATGGTTACAGCCAA+GGG | - | chr3.4:16118503-16118522 | MS.gene51814:intron | 40.0% | |
TAGGTATTCCTGCTTCTACT+TGG | - | chr3.4:16117372-16117391 | MS.gene51814:CDS | 40.0% | |
TATTATCCCTATGCCTGAGA+TGG | - | chr3.4:16117688-16117707 | MS.gene51814:CDS | 40.0% | |
TCAAACCTCAATGTTTGGGA+TGG | - | chr3.4:16117632-16117651 | MS.gene51814:CDS | 40.0% | |
TGTTAACGGTAGAAAATCGC+TGG | + | chr3.4:16117079-16117098 | None:intergenic | 40.0% | |
TTAGAGCAAGATACAAAGCC+AGG | + | chr3.4:16118565-16118584 | None:intergenic | 40.0% | |
TTCATTGAATTGGGGTTTGC+TGG | - | chr3.4:16117848-16117867 | MS.gene51814:CDS | 40.0% | |
! | AAACCTCAATGTTTGGGATG+GGG | - | chr3.4:16117634-16117653 | MS.gene51814:CDS | 40.0% |
! | ATCATCTTCAGAAGTGCAAC+TGG | + | chr3.4:16117402-16117421 | None:intergenic | 40.0% |
! | ATCTCCTTTTTGCTTCGTGA+AGG | + | chr3.4:16117995-16118014 | None:intergenic | 40.0% |
! | CAAACCTCAATGTTTGGGAT+GGG | - | chr3.4:16117633-16117652 | MS.gene51814:CDS | 40.0% |
! | GATGTATAGGCTGTTCTGAA+CGG | + | chr3.4:16117427-16117446 | None:intergenic | 40.0% |
! | GTTCAAGGAGTATGGAATAG+AGG | + | chr3.4:16117535-16117554 | None:intergenic | 40.0% |
AAGAACTGATTGTAGCTGCG+AGG | - | chr3.4:16117745-16117764 | MS.gene51814:CDS | 45.0% | |
AATGTCCTTATGGGTCGTTC+TGG | + | chr3.4:16117500-16117519 | None:intergenic | 45.0% | |
ACCTGAAGTCTTGGCCAAAT+GGG | + | chr3.4:16117133-16117152 | None:intergenic | 45.0% | |
AGAGTGGGAATGGTGATCAT+TGG | - | chr3.4:16118461-16118480 | MS.gene51814:intron | 45.0% | |
AGCATCTCCTCAGCATCAAA+AGG | + | chr3.4:16117021-16117040 | None:intergenic | 45.0% | |
AGTGGGAATGGTGATCATTG+GGG | - | chr3.4:16118463-16118482 | MS.gene51814:intron | 45.0% | |
ATCAAGCTGATGTTCCTGCA+TGG | - | chr3.4:16117591-16117610 | MS.gene51814:CDS | 45.0% | |
ATCCCAAACATGTTGGTCCT+GGG | + | chr3.4:16118374-16118393 | None:intergenic | 45.0% | |
ATGACATGGGAGTTGCTTCA+AGG | - | chr3.4:16118425-16118444 | MS.gene51814:intron | 45.0% | |
ATTTGGCCAAGACTTCAGGT+GGG | - | chr3.4:16117133-16117152 | MS.gene51814:CDS | 45.0% | |
CAATGAAGTTGCTACCCATG+AGG | - | chr3.4:16118123-16118142 | MS.gene51814:CDS | 45.0% | |
CAGAATCCTCATCTTCCTCA+TGG | + | chr3.4:16118141-16118160 | None:intergenic | 45.0% | |
CATTGGGGCAGCAACTATAA+TGG | - | chr3.4:16118478-16118497 | MS.gene51814:intron | 45.0% | |
CCATACACGTCACATGACAT+GGG | - | chr3.4:16118412-16118431 | MS.gene51814:intron | 45.0% | |
CCGCAATGATGATCACTTAG+AGG | - | chr3.4:16118207-16118226 | MS.gene51814:CDS | 45.0% | |
CTCAGGCATAGGGATAATAC+AGG | + | chr3.4:16117687-16117706 | None:intergenic | 45.0% | |
GAAGCAGGAATACCTATCAC+AGG | + | chr3.4:16117368-16117387 | None:intergenic | 45.0% | |
GAGAACAAGTGGCTCAAAAG+TGG | - | chr3.4:16117876-16117895 | MS.gene51814:CDS | 45.0% | |
GAGTGGGAATGGTGATCATT+GGG | - | chr3.4:16118462-16118481 | MS.gene51814:intron | 45.0% | |
GTAAGCAATGGTTACAGCCA+AGG | - | chr3.4:16118502-16118521 | MS.gene51814:intron | 45.0% | |
TAAACTCCCACCTGAAGTCT+TGG | + | chr3.4:16117142-16117161 | None:intergenic | 45.0% | |
TCAAGCTGATGTTCCTGCAT+GGG | - | chr3.4:16117592-16117611 | MS.gene51814:CDS | 45.0% | |
TCCATACACGTCACATGACA+TGG | - | chr3.4:16118411-16118430 | MS.gene51814:intron | 45.0% | |
TGACATGGGAGTTGCTTCAA+GGG | - | chr3.4:16118426-16118445 | MS.gene51814:intron | 45.0% | |
TGATCAGCTCCAACTGATAC+AGG | + | chr3.4:16117572-16117591 | None:intergenic | 45.0% | |
TGATGATTGCGACACCCATT+TGG | - | chr3.4:16117116-16117135 | MS.gene51814:CDS | 45.0% | |
! | ATCTTCAGAAGTGCAACTGG+TGG | + | chr3.4:16117399-16117418 | None:intergenic | 45.0% |
! | GAAACGTCCTTTTGATGCTG+AGG | - | chr3.4:16117011-16117030 | MS.gene51814:CDS | 45.0% |
! | GTTCTGGACTGAAGTACTCA+TGG | + | chr3.4:16117460-16117479 | None:intergenic | 45.0% |
! | TCTTCAGAAGTGCAACTGGT+GGG | + | chr3.4:16117398-16117417 | None:intergenic | 45.0% |
! | TTCCTGCATGGGGTTTTTCT+GGG | - | chr3.4:16117603-16117622 | MS.gene51814:CDS | 45.0% |
!! | AGGTTTTTGGAGATGGACGA+AGG | - | chr3.4:16118626-16118645 | MS.gene51814:CDS | 45.0% |
!! | CTTGCTGTTGAAACCTGTGA+TGG | - | chr3.4:16117317-16117336 | MS.gene51814:CDS | 45.0% |
AAGCCCAGGACCAACATGTT+TGG | - | chr3.4:16118368-16118387 | MS.gene51814:CDS | 50.0% | |
AATGCTCCAGCACATACCCT+TGG | + | chr3.4:16118522-16118541 | None:intergenic | 50.0% | |
ACCAAGGTGAAGAGTGGGAA+TGG | - | chr3.4:16118451-16118470 | MS.gene51814:intron | 50.0% | |
ACCATTCCCACTCTTCACCT+TGG | + | chr3.4:16118455-16118474 | None:intergenic | 50.0% | |
ACCCATTTGGCCAAGACTTC+AGG | - | chr3.4:16117129-16117148 | MS.gene51814:CDS | 50.0% | |
AGCCCAGGACCAACATGTTT+GGG | - | chr3.4:16118369-16118388 | MS.gene51814:CDS | 50.0% | |
AGTTGCTTCAAGGGAGACCA+AGG | - | chr3.4:16118435-16118454 | MS.gene51814:intron | 50.0% | |
CAAGCTGATGTTCCTGCATG+GGG | - | chr3.4:16117593-16117612 | MS.gene51814:CDS | 50.0% | |
CACCTGAAGTCTTGGCCAAA+TGG | + | chr3.4:16117134-16117153 | None:intergenic | 50.0% | |
CATCCCAAACATGTTGGTCC+TGG | + | chr3.4:16118375-16118394 | None:intergenic | 50.0% | |
CATCCCCATCCCAAACATTG+AGG | + | chr3.4:16117640-16117659 | None:intergenic | 50.0% | |
CATTTGGCCAAGACTTCAGG+TGG | - | chr3.4:16117132-16117151 | MS.gene51814:CDS | 50.0% | |
CCCATGTCATGTGACGTGTA+TGG | + | chr3.4:16118415-16118434 | None:intergenic | 50.0% | |
CCTGGGCTTGAATCAGATGA+GGG | + | chr3.4:16118357-16118376 | None:intergenic | 50.0% | |
CTGGGCTTGAATCAGATGAG+GGG | + | chr3.4:16118356-16118375 | None:intergenic | 50.0% | |
GAGGAAGGATATGCACAAGG+TGG | - | chr3.4:16117275-16117294 | MS.gene51814:CDS | 50.0% | |
GCTTGCGAGGAGAATGTTCA+AGG | + | chr3.4:16117550-16117569 | None:intergenic | 50.0% | |
TCAGTCCAGAACGACCCATA+AGG | - | chr3.4:16117492-16117511 | MS.gene51814:CDS | 50.0% | |
TCCTGGGCTTGAATCAGATG+AGG | + | chr3.4:16118358-16118377 | None:intergenic | 50.0% | |
TGATGCTGAGGAGATGCTTG+AGG | - | chr3.4:16117023-16117042 | MS.gene51814:CDS | 50.0% | |
TGCTACCCATGAGGAAGATG+AGG | - | chr3.4:16118132-16118151 | MS.gene51814:CDS | 50.0% | |
TTCAAACACCCGAAGCATGC+AGG | - | chr3.4:16117051-16117070 | MS.gene51814:CDS | 50.0% | |
! | GTTCCTGCATGGGGTTTTTC+TGG | - | chr3.4:16117602-16117621 | MS.gene51814:CDS | 50.0% |
! | TGGGTGTCGCAATCATCATC+AGG | + | chr3.4:16117114-16117133 | None:intergenic | 50.0% |
! | TTACAGCCAAGGGTATGTGC+TGG | - | chr3.4:16118513-16118532 | MS.gene51814:intron | 50.0% |
!! | ACCTGTGATGGACATCCTAG+AGG | - | chr3.4:16117329-16117348 | MS.gene51814:CDS | 50.0% |
!! | CCTGTGATGGACATCCTAGA+GGG | - | chr3.4:16117330-16117349 | MS.gene51814:CDS | 50.0% |
!! | CTGTGATGGACATCCTAGAG+GGG | - | chr3.4:16117331-16117350 | MS.gene51814:CDS | 50.0% |
!! | GAATTGGGGTTTGCTGGCAT+GGG | - | chr3.4:16117854-16117873 | MS.gene51814:CDS | 50.0% |
!! | TGAATTGGGGTTTGCTGGCA+TGG | - | chr3.4:16117853-16117872 | MS.gene51814:CDS | 50.0% |
!! | TGGAGCATTGTGATGCACCA+GGG | - | chr3.4:16118533-16118552 | MS.gene51814:CDS | 50.0% |
AGCATTGTGATGCACCAGGG+TGG | - | chr3.4:16118536-16118555 | MS.gene51814:CDS | 55.0% | |
AGGGAGACCAAGGTGAAGAG+TGG | - | chr3.4:16118445-16118464 | MS.gene51814:intron | 55.0% | |
ATGGACATCCTAGAGGGGCT+GGG | - | chr3.4:16117336-16117355 | MS.gene51814:CDS | 55.0% | |
CCAACTGATACAGGCTTGCG+AGG | + | chr3.4:16117563-16117582 | None:intergenic | 55.0% | |
CCCTCATCTGATTCAAGCCC+AGG | - | chr3.4:16118354-16118373 | MS.gene51814:CDS | 55.0% | |
CCTCGCAAGCCTGTATCAGT+TGG | - | chr3.4:16117560-16117579 | MS.gene51814:CDS | 55.0% | |
GAAAGCGAGCTGAGCAGAAC+AGG | - | chr3.4:16118047-16118066 | MS.gene51814:CDS | 55.0% | |
GACCCAGAAAAACCCCATGC+AGG | + | chr3.4:16117608-16117627 | None:intergenic | 55.0% | |
GATTGTAGCTGCGAGGACAG+TGG | - | chr3.4:16117752-16117771 | MS.gene51814:CDS | 55.0% | |
GCATTGTGATGCACCAGGGT+GGG | - | chr3.4:16118537-16118556 | MS.gene51814:CDS | 55.0% | |
GGGAGACCAAGGTGAAGAGT+GGG | - | chr3.4:16118446-16118465 | MS.gene51814:intron | 55.0% | |
TGCTGGCATGGGAGAACAAG+TGG | - | chr3.4:16117865-16117884 | MS.gene51814:CDS | 55.0% | |
!! | CCCTCTAGGATGTCCATCAC+AGG | + | chr3.4:16117333-16117352 | None:intergenic | 55.0% |
!! | CTGGAGCATTGTGATGCACC+AGG | - | chr3.4:16118532-16118551 | MS.gene51814:CDS | 55.0% |
ACAAAGCCAGGATCCCACCC+TGG | + | chr3.4:16118553-16118572 | None:intergenic | 60.0% | |
GATGGACATCCTAGAGGGGC+TGG | - | chr3.4:16117335-16117354 | MS.gene51814:CDS | 60.0% | |
GCTGGGGACTCTCCTGTGAT+AGG | - | chr3.4:16117353-16117372 | MS.gene51814:CDS | 60.0% | |
TCGCTGGGACCTGCATGCTT+CGG | + | chr3.4:16117063-16117082 | None:intergenic | 60.0% | |
TGGACATCCTAGAGGGGCTG+GGG | - | chr3.4:16117337-16117356 | MS.gene51814:CDS | 60.0% | |
! | CTGGTGGGCCAAGTAGAAGC+AGG | + | chr3.4:16117383-16117402 | None:intergenic | 60.0% |
CGCTGGGACCTGCATGCTTC+GGG | + | chr3.4:16117062-16117081 | None:intergenic | 65.0% | |
GATGCACCAGGGTGGGATCC+TGG | - | chr3.4:16118544-16118563 | MS.gene51814:CDS | 65.0% | |
GGAGAGTCCCCAGCCCCTCT+AGG | + | chr3.4:16117347-16117366 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 16117003 | 16118669 | 16117003 | ID=MS.gene51814 |
chr3.4 | mRNA | 16117003 | 16118669 | 16117003 | ID=MS.gene51814.t1;Parent=MS.gene51814 |
chr3.4 | exon | 16118522 | 16118669 | 16118522 | ID=MS.gene51814.t1.exon1;Parent=MS.gene51814.t1 |
chr3.4 | CDS | 16118522 | 16118669 | 16118522 | ID=cds.MS.gene51814.t1;Parent=MS.gene51814.t1 |
chr3.4 | exon | 16117003 | 16118396 | 16117003 | ID=MS.gene51814.t1.exon2;Parent=MS.gene51814.t1 |
chr3.4 | CDS | 16117003 | 16118396 | 16117003 | ID=cds.MS.gene51814.t1;Parent=MS.gene51814.t1 |
Gene Sequence |
Protein sequence |