Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50904.t1 | AES99755.2 | 66.2 | 71 | 7 | 1 | 1 | 71 | 1 | 54 | 1.70E-12 | 82.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50904.t1 | G7K7C5 | 66.2 | 71 | 7 | 1 | 1 | 71 | 1 | 54 | 1.3e-12 | 82.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene50904 | 0.805079 | 1.59E-49 | -1.69E-46 |
| MS.gene049977 | MS.gene50904 | 0.817832 | 2.69E-52 | -1.69E-46 |
| MS.gene051613 | MS.gene50904 | 0.800927 | 1.15E-48 | -1.69E-46 |
| MS.gene056776 | MS.gene50904 | 0.815965 | 7.05E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50904.t1 | MTR_5g084370 | 60.000 | 55 | 5 | 1 | 17 | 71 | 17 | 54 | 6.30e-13 | 63.2 |
| MS.gene50904.t1 | MTR_7g050405 | 95.000 | 40 | 2 | 0 | 73 | 112 | 112 | 151 | 7.02e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCATCCACTCGAAGAAAA+AGG | 0.267544 | 3.3:-14430068 | None:intergenic |
| CAAAACCTTTGTTCCACTTC+CGG | 0.302523 | 3.3:-14427809 | None:intergenic |
| AAACAGGATACTGCATCTTT+TGG | 0.320733 | 3.3:+14427968 | MS.gene50904:intron |
| CATAGAACTGTTGGAATTAA+CGG | 0.364166 | 3.3:-14427875 | None:intergenic |
| AGCTTATGTTGTTATTCAGC+TGG | 0.387479 | 3.3:+14429992 | MS.gene50904:CDS |
| TGCTGTTGCGGTGCTGGTGG+TGG | 0.388686 | 3.3:+14429899 | MS.gene50904:CDS |
| CACAAACCGCACCACAGGAC+AGG | 0.390028 | 3.3:-14429922 | None:intergenic |
| CTGTCCTGTGGTGCGGTTTG+TGG | 0.404468 | 3.3:+14429923 | MS.gene50904:CDS |
| GACTGAACAATGGCAGGATT+CGG | 0.435178 | 3.3:+14427763 | None:intergenic |
| CTGCAGCAGTGGCAGTTAGC+AGG | 0.464105 | 3.3:+14429946 | MS.gene50904:CDS |
| GGGTTTGACAAGGTCGGTGG+TGG | 0.475442 | 3.3:+14427838 | MS.gene50904:CDS |
| CATGACCTTCATAGAACTGT+TGG | 0.484367 | 3.3:-14427884 | None:intergenic |
| GGTGGTGATGGTGCCGGAAG+TGG | 0.486897 | 3.3:+14427796 | MS.gene50904:CDS |
| CCATTCATAATCAATGTTGA+CGG | 0.488564 | 3.3:-14428038 | None:intergenic |
| AAGGGACAATAAAACCCGTC+TGG | 0.489785 | 3.3:-14430049 | None:intergenic |
| CGGTGCACATCGGCCATGAC+AGG | 0.497947 | 3.3:+14428013 | MS.gene50904:CDS |
| TAATTCCAACAGTTCTATGA+AGG | 0.500068 | 3.3:+14427879 | MS.gene50904:CDS |
| CCGTCAACATTGATTATGAA+TGG | 0.508279 | 3.3:+14428038 | MS.gene50904:CDS |
| GCAGCCACAAACCGCACCAC+AGG | 0.522063 | 3.3:-14429927 | None:intergenic |
| AATGTTGACGGTTCCTGTCA+TGG | 0.526743 | 3.3:-14428026 | None:intergenic |
| GCGGTTTGTGGCTGCAGCAG+TGG | 0.550530 | 3.3:+14429935 | MS.gene50904:CDS |
| GGTTAAGACTGAACAATGGC+AGG | 0.551228 | 3.3:+14427757 | None:intergenic |
| GCTGGTGGTGGCCTGTCCTG+TGG | 0.559356 | 3.3:+14429911 | MS.gene50904:CDS |
| AATGGTGGGTTTGACAAGGT+CGG | 0.560867 | 3.3:+14427832 | MS.gene50904:CDS |
| GAAGTACATCTATTCCAGAC+GGG | 0.562427 | 3.3:+14430035 | MS.gene50904:CDS |
| GGGGTCGCCGCGGTGCACAT+CGG | 0.563740 | 3.3:+14428003 | MS.gene50904:CDS |
| GCAGTGGCAGTTAGCAGGTG+CGG | 0.571360 | 3.3:+14429951 | MS.gene50904:CDS |
| TGACAAGGTCGGTGGTGGAG+TGG | 0.576900 | 3.3:+14427843 | MS.gene50904:CDS |
| TACAGAGGTGGTGATGGTGC+CGG | 0.578930 | 3.3:+14427790 | MS.gene50904:CDS |
| TTTGAATGGTGGGTTTGACA+AGG | 0.593014 | 3.3:+14427828 | MS.gene50904:CDS |
| GGTGGGTTTGACAAGGTCGG+TGG | 0.594855 | 3.3:+14427835 | MS.gene50904:CDS |
| TGAAGTACATCTATTCCAGA+CGG | 0.598535 | 3.3:+14430034 | MS.gene50904:CDS |
| TGGTGGCCTGTCCTGTGGTG+CGG | 0.603802 | 3.3:+14429916 | MS.gene50904:CDS |
| GGTGGTTACAGAGGTGGTGA+TGG | 0.612810 | 3.3:+14427784 | MS.gene50904:CDS |
| TGAACAATGGCAGGATTCGG+TGG | 0.629242 | 3.3:+14427766 | None:intergenic |
| GCAGGATTCGGTGGTTACAG+AGG | 0.637049 | 3.3:+14427775 | MS.gene50904:CDS |
| GGATTCGGTGGTTACAGAGG+TGG | 0.643969 | 3.3:+14427778 | MS.gene50904:CDS |
| TGGTGCCGGAAGTGGAACAA+AGG | 0.675473 | 3.3:+14427804 | MS.gene50904:CDS |
| GATTAGAGGAGGGGTCGCCG+CGG | 0.702663 | 3.3:+14427993 | MS.gene50904:CDS |
| GTCATGGCCGATGTGCACCG+CGG | 0.749893 | 3.3:-14428010 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTAATAAGTTAGAT+GGG | + | chr3.3:14429393-14429412 | MS.gene50904:intron | 10.0% |
| !!! | ATATTGATTCTATAAATTAA+AGG | + | chr3.3:14428862-14428881 | MS.gene50904:intron | 10.0% |
| !!! | TAAATTTTTAATAAGTTAGA+TGG | + | chr3.3:14429392-14429411 | MS.gene50904:intron | 10.0% |
| !! | TATTTATTTGTTTCATTCAT+TGG | - | chr3.3:14428950-14428969 | None:intergenic | 15.0% |
| !!! | ATTTTTGTAGAAATTTCTAA+TGG | + | chr3.3:14429622-14429641 | MS.gene50904:intron | 15.0% |
| !!! | TTTGTGAATTTATTTTAAAC+AGG | + | chr3.3:14427952-14427971 | MS.gene50904:intron | 15.0% |
| !! | AATAAATTCACAAAGAGAAA+TGG | - | chr3.3:14427946-14427965 | None:intergenic | 20.0% |
| !! | ATAAAACTATATTTCAGCTT+AGG | + | chr3.3:14428676-14428695 | MS.gene50904:intron | 20.0% |
| !! | ATAAATTCACAAAGAGAAAT+GGG | - | chr3.3:14427945-14427964 | None:intergenic | 20.0% |
| !! | ATAAGCAAAAAAGTTTATCT+TGG | - | chr3.3:14429683-14429702 | None:intergenic | 20.0% |
| !!! | AAACATCATTTTATTTTCCT+AGG | + | chr3.3:14428753-14428772 | MS.gene50904:intron | 20.0% |
| !!! | AAATAAGATTAGTTCAATGT+TGG | + | chr3.3:14428383-14428402 | MS.gene50904:intron | 20.0% |
| !!! | ATTGTTTTTTTCATTCTATC+CGG | + | chr3.3:14429544-14429563 | MS.gene50904:intron | 20.0% |
| ! | ATAACCTATGAAAAACCATA+AGG | - | chr3.3:14429474-14429493 | None:intergenic | 25.0% |
| ! | CAATTAAAGAAGGAAATTTG+AGG | - | chr3.3:14429098-14429117 | None:intergenic | 25.0% |
| ! | TGATTGAACTAATGTTTGAA+TGG | + | chr3.3:14428699-14428718 | MS.gene50904:intron | 25.0% |
| !! | TCAAAATAACCTCTTTTATG+AGG | + | chr3.3:14428921-14428940 | MS.gene50904:intron | 25.0% |
| !!! | AACTTGAAAGTTGATAATGT+TGG | + | chr3.3:14428897-14428916 | MS.gene50904:intron | 25.0% |
| !!! | CAACTTTCAAGTTAATTTCA+AGG | - | chr3.3:14428890-14428909 | None:intergenic | 25.0% |
| !!! | GCTGAAATATAGTTTTATCA+AGG | - | chr3.3:14428674-14428693 | None:intergenic | 25.0% |
| AAAGTCAAACACATAGGTAA+AGG | - | chr3.3:14428521-14428540 | None:intergenic | 30.0% | |
| AAATCACATAAATAAGGGTC+TGG | + | chr3.3:14428204-14428223 | MS.gene50904:intron | 30.0% | |
| AACGATCATGCAATTAAAGA+AGG | - | chr3.3:14429108-14429127 | None:intergenic | 30.0% | |
| AAGAATAATAGATAGGCAGA+TGG | - | chr3.3:14428439-14428458 | None:intergenic | 30.0% | |
| AATGCTACATATTATGCAAG+AGG | + | chr3.3:14428253-14428272 | MS.gene50904:intron | 30.0% | |
| AGAAGATAACTCCAAATAAG+AGG | - | chr3.3:14428073-14428092 | None:intergenic | 30.0% | |
| ATATGTAGCATTTGCAATTG+AGG | - | chr3.3:14428245-14428264 | None:intergenic | 30.0% | |
| ATGCAATAAACTGACAACAA+TGG | - | chr3.3:14428178-14428197 | None:intergenic | 30.0% | |
| ATTGCAAAAGTCAAACACAT+AGG | - | chr3.3:14428527-14428546 | None:intergenic | 30.0% | |
| CATAGAACTGTTGGAATTAA+CGG | - | chr3.3:14427878-14427897 | None:intergenic | 30.0% | |
| CCATTCATAATCAATGTTGA+CGG | - | chr3.3:14428041-14428060 | None:intergenic | 30.0% | |
| CCTATCTATTATTCTTGAAG+AGG | + | chr3.3:14428443-14428462 | MS.gene50904:intron | 30.0% | |
| CCTCTTCAAGAATAATAGAT+AGG | - | chr3.3:14428446-14428465 | None:intergenic | 30.0% | |
| CTCCCAAATCACATAAATAA+GGG | + | chr3.3:14428199-14428218 | MS.gene50904:intron | 30.0% | |
| TAATTATTTCGTCGATCTCA+AGG | + | chr3.3:14429139-14429158 | MS.gene50904:intron | 30.0% | |
| TAATTCCAACAGTTCTATGA+AGG | + | chr3.3:14427879-14427898 | MS.gene50904:CDS | 30.0% | |
| TTGAATGGAGATTAATAGCA+TGG | + | chr3.3:14428714-14428733 | MS.gene50904:intron | 30.0% | |
| ! | AGACCCTTATTTATGTGATT+TGG | - | chr3.3:14428205-14428224 | None:intergenic | 30.0% |
| ! | GAATCCTTATGGTTTTTCAT+AGG | + | chr3.3:14429467-14429486 | MS.gene50904:intron | 30.0% |
| ! | GACCCTTATTTATGTGATTT+GGG | - | chr3.3:14428204-14428223 | None:intergenic | 30.0% |
| !! | TATGTGTTTGACTTTTGCAA+TGG | + | chr3.3:14428526-14428545 | MS.gene50904:intron | 30.0% |
| !!! | TTTTTTGCGTTGAATCCTTA+TGG | + | chr3.3:14429456-14429475 | MS.gene50904:intron | 30.0% |
| AATAATAGATAGGCAGATGG+AGG | - | chr3.3:14428436-14428455 | None:intergenic | 35.0% | |
| ACTATAAGTGATGTCTCAAG+AGG | - | chr3.3:14429315-14429334 | None:intergenic | 35.0% | |
| AGGTCATGATGTGATTAAAC+AGG | + | chr3.3:14427899-14427918 | MS.gene50904:intron | 35.0% | |
| ATCAGAAAAAGTGACTCCAA+GGG | - | chr3.3:14429025-14429044 | None:intergenic | 35.0% | |
| CACGCATTAAAAATGTGCTT+TGG | - | chr3.3:14429751-14429770 | None:intergenic | 35.0% | |
| CATTCAATTTGTGCAGTATG+AGG | + | chr3.3:14428284-14428303 | MS.gene50904:intron | 35.0% | |
| CTATCAAACCATTGCAAGAA+GGG | - | chr3.3:14428820-14428839 | None:intergenic | 35.0% | |
| GATAACTCCAAATAAGAGGA+AGG | - | chr3.3:14428069-14428088 | None:intergenic | 35.0% | |
| GCTCCCAAATCACATAAATA+AGG | + | chr3.3:14428198-14428217 | MS.gene50904:intron | 35.0% | |
| GGATTCAACGCAAAAAAAGA+AGG | - | chr3.3:14429453-14429472 | None:intergenic | 35.0% | |
| TATCAAACCATTGCAAGAAG+GGG | - | chr3.3:14428819-14428838 | None:intergenic | 35.0% | |
| TGAAGTACATCTATTCCAGA+CGG | + | chr3.3:14430034-14430053 | MS.gene50904:CDS | 35.0% | |
| TGAGACATCACTTATAGTGT+TGG | + | chr3.3:14429317-14429336 | MS.gene50904:intron | 35.0% | |
| ! | AAACAGGATACTGCATCTTT+TGG | + | chr3.3:14427968-14427987 | MS.gene50904:intron | 35.0% |
| ! | AAATTTGAGGCAAGTGTGAT+GGG | - | chr3.3:14429085-14429104 | None:intergenic | 35.0% |
| ! | AGCTTATGTTGTTATTCAGC+TGG | + | chr3.3:14429992-14430011 | MS.gene50904:CDS | 35.0% |
| ! | ATCATGAGTCACTTTGTCTA+TGG | + | chr3.3:14429279-14429298 | MS.gene50904:intron | 35.0% |
| ! | CAAAGCACATTTTTAATGCG+TGG | + | chr3.3:14429749-14429768 | MS.gene50904:intron | 35.0% |
| ! | CCGTCAACATTGATTATGAA+TGG | + | chr3.3:14428038-14428057 | MS.gene50904:CDS | 35.0% |
| ! | GATTAATAGCATGGACTAAG+AGG | + | chr3.3:14428723-14428742 | MS.gene50904:intron | 35.0% |
| ! | TTATTTTCCTAGGTCAGCTT+AGG | + | chr3.3:14428763-14428782 | MS.gene50904:intron | 35.0% |
| !! | ATGTTGGTTTGCTTTCAAAG+AGG | + | chr3.3:14428399-14428418 | MS.gene50904:intron | 35.0% |
| !! | CATTGGTTTCCTCATAAAAG+AGG | - | chr3.3:14428933-14428952 | None:intergenic | 35.0% |
| !!! | AGTGGAACAAAGGTTTTGAA+TGG | + | chr3.3:14427814-14427833 | MS.gene50904:CDS | 35.0% |
| !!! | GAACAAAGGTTTTGAATGGT+GGG | + | chr3.3:14427818-14427837 | MS.gene50904:CDS | 35.0% |
| !!! | TTTTTTTCATTCTATCCGGC+AGG | + | chr3.3:14429548-14429567 | MS.gene50904:intron | 35.0% |
| ATCAAACCATTGCAAGAAGG+GGG | - | chr3.3:14428818-14428837 | None:intergenic | 40.0% | |
| ATTCGATGTCGTAGTCGAAT+TGG | + | chr3.3:14429178-14429197 | MS.gene50904:intron | 40.0% | |
| CAAAACCTTTGTTCCACTTC+CGG | - | chr3.3:14427812-14427831 | None:intergenic | 40.0% | |
| CAAGAAGACAACAATGTTGC+AGG | - | chr3.3:14429239-14429258 | None:intergenic | 40.0% | |
| CACATAAATAAGGGTCTGGA+AGG | + | chr3.3:14428208-14428227 | MS.gene50904:intron | 40.0% | |
| CATCAGAAAAAGTGACTCCA+AGG | - | chr3.3:14429026-14429045 | None:intergenic | 40.0% | |
| CATGACCTTCATAGAACTGT+TGG | - | chr3.3:14427887-14427906 | None:intergenic | 40.0% | |
| GAAGTACATCTATTCCAGAC+GGG | + | chr3.3:14430035-14430054 | MS.gene50904:CDS | 40.0% | |
| GCAATGAAGCCAATTCAACT+CGG | - | chr3.3:14429210-14429229 | None:intergenic | 40.0% | |
| GCTATCAAACCATTGCAAGA+AGG | - | chr3.3:14428821-14428840 | None:intergenic | 40.0% | |
| TCATCAAGATATCCAACCCT+TGG | + | chr3.3:14429006-14429025 | MS.gene50904:intron | 40.0% | |
| ! | ATGTGCTTTGGATCGATTAG+TGG | - | chr3.3:14429739-14429758 | None:intergenic | 40.0% |
| ! | ATTGTCCCTTTTTCTTCGAG+TGG | + | chr3.3:14430062-14430081 | MS.gene50904:CDS | 40.0% |
| ! | CGTAATACTCTGATTTGCAC+TGG | + | chr3.3:14429420-14429439 | MS.gene50904:intron | 40.0% |
| ! | GAAATTTGAGGCAAGTGTGA+TGG | - | chr3.3:14429086-14429105 | None:intergenic | 40.0% |
| !! | TTTGAATGGTGGGTTTGACA+AGG | + | chr3.3:14427828-14427847 | MS.gene50904:CDS | 40.0% |
| !!! | ATCTTTTGGTGGATTAGAGG+AGG | + | chr3.3:14427982-14428001 | MS.gene50904:CDS | 40.0% |
| !!! | GGAACAAAGGTTTTGAATGG+TGG | + | chr3.3:14427817-14427836 | MS.gene50904:CDS | 40.0% |
| !!! | GGAGTCACTTTTTCTGATGT+TGG | + | chr3.3:14429027-14429046 | MS.gene50904:intron | 40.0% |
| !!! | TCTTTTGGTGGATTAGAGGA+GGG | + | chr3.3:14427983-14428002 | MS.gene50904:CDS | 40.0% |
| !!! | TGCATCTTTTGGTGGATTAG+AGG | + | chr3.3:14427979-14427998 | MS.gene50904:CDS | 40.0% |
| !!! | TGGTTTTTTTGGTCCTGTCA+TGG | + | chr3.3:14429867-14429886 | MS.gene50904:intron | 40.0% |
| !!! | TTTTTTCCCCCTTCTTGCAA+TGG | + | chr3.3:14428809-14428828 | MS.gene50904:intron | 40.0% |
| AAGGGACAATAAAACCCGTC+TGG | - | chr3.3:14430052-14430071 | None:intergenic | 45.0% | |
| AATGTTGACGGTTCCTGTCA+TGG | - | chr3.3:14428029-14428048 | None:intergenic | 45.0% | |
| GAAAAAGTGACTCCAAGGGT+TGG | - | chr3.3:14429021-14429040 | None:intergenic | 45.0% | |
| GCTGGTGTCTTTATGCTGAA+GGG | + | chr3.3:14429842-14429861 | MS.gene50904:intron | 45.0% | |
| GGTAGTGCCTTCCTCTTATT+TGG | + | chr3.3:14428059-14428078 | MS.gene50904:intron | 45.0% | |
| GTCGATCTCAAGGTTGTTGT+TGG | + | chr3.3:14429149-14429168 | MS.gene50904:intron | 45.0% | |
| TAAGCAAATCCTCAACCTGC+CGG | - | chr3.3:14429566-14429585 | None:intergenic | 45.0% | |
| TCAACGTTTGCGATTCTTCG+TGG | + | chr3.3:14429597-14429616 | MS.gene50904:intron | 45.0% | |
| TGCTGGTGTCTTTATGCTGA+AGG | + | chr3.3:14429841-14429860 | MS.gene50904:intron | 45.0% | |
| TGTCTTTATGCTGAAGGGAC+TGG | + | chr3.3:14429847-14429866 | MS.gene50904:intron | 45.0% | |
| TTCAGCATAAAGACACCAGC+AGG | - | chr3.3:14429842-14429861 | None:intergenic | 45.0% | |
| ! | AGCATGGACTAAGAGGCTTT+GGG | + | chr3.3:14428730-14428749 | MS.gene50904:intron | 45.0% |
| ! | AGGTTGAGGATTTGCTTAGG+AGG | + | chr3.3:14429568-14429587 | MS.gene50904:intron | 45.0% |
| ! | CAGGATACTGCATCTTTTGG+TGG | + | chr3.3:14427971-14427990 | MS.gene50904:intron | 45.0% |
| ! | GATCTCAAGGTTGTTGTTGG+TGG | + | chr3.3:14429152-14429171 | MS.gene50904:intron | 45.0% |
| ! | GTCACTTTGTCTATGGCAAG+AGG | + | chr3.3:14429286-14429305 | MS.gene50904:intron | 45.0% |
| ! | TAGCATGGACTAAGAGGCTT+TGG | + | chr3.3:14428729-14428748 | MS.gene50904:intron | 45.0% |
| ! | TGGTTGTGTCCGAGTTGAAT+TGG | + | chr3.3:14429198-14429217 | MS.gene50904:intron | 45.0% |
| !! | AATGGTGGGTTTGACAAGGT+CGG | + | chr3.3:14427832-14427851 | MS.gene50904:CDS | 45.0% |
| !!! | AATGCGTGGAGTGCTGTTTT+TGG | + | chr3.3:14429763-14429782 | MS.gene50904:intron | 45.0% |
| !!! | CTTTTGGTGGATTAGAGGAG+GGG | + | chr3.3:14427984-14428003 | MS.gene50904:CDS | 45.0% |
| !!! | GCTGAAGGGACTGGTTTTTT+TGG | + | chr3.3:14429856-14429875 | MS.gene50904:intron | 45.0% |
| !! | AAATTTATATAACATAAATT+CGG | - | chr3.3:14429379-14429398 | None:intergenic | 5.0% |
| !! | AATATAATAAAAGTTTAAAT+TGG | + | chr3.3:14428966-14428985 | MS.gene50904:intron | 5.0% |
| AGCAAAACTGCAGCCATGAC+AGG | - | chr3.3:14429883-14429902 | None:intergenic | 50.0% | |
| CCAATCACCTAAGCTGACCT+AGG | - | chr3.3:14428773-14428792 | None:intergenic | 50.0% | |
| CCTAGGTCAGCTTAGGTGAT+TGG | + | chr3.3:14428770-14428789 | MS.gene50904:intron | 50.0% | |
| CTTCCTGCTGTGTGCAAATG+TGG | + | chr3.3:14429816-14429835 | MS.gene50904:intron | 50.0% | |
| TCATTCTATCCGGCAGGTTG+AGG | + | chr3.3:14429554-14429573 | MS.gene50904:intron | 50.0% | |
| ! | GGCAGGTTGAGGATTTGCTT+AGG | + | chr3.3:14429565-14429584 | MS.gene50904:intron | 50.0% |
| !!! | GTGCTGTTTTTGGAGTGCAG+CGG | + | chr3.3:14429773-14429792 | MS.gene50904:intron | 50.0% |
| !!! | TGGCTGCAGTTTTGCTGTTG+CGG | + | chr3.3:14429887-14429906 | MS.gene50904:intron | 50.0% |
| !!! | TGTTTTTGGAGTGCAGCGGT+GGG | + | chr3.3:14429777-14429796 | MS.gene50904:intron | 50.0% |
| AGGCCACATTTGCACACAGC+AGG | - | chr3.3:14429822-14429841 | None:intergenic | 55.0% | |
| GGTGGTTACAGAGGTGGTGA+TGG | + | chr3.3:14427784-14427803 | MS.gene50904:CDS | 55.0% | |
| TGTGTGCAAATGTGGCCTGC+TGG | + | chr3.3:14429824-14429843 | MS.gene50904:intron | 55.0% | |
| ! | TGGTGCCGGAAGTGGAACAA+AGG | + | chr3.3:14427804-14427823 | MS.gene50904:CDS | 55.0% |
| !! | GCAGGATTCGGTGGTTACAG+AGG | + | chr3.3:14427775-14427794 | MS.gene50904:CDS | 55.0% |
| !! | GGATTCGGTGGTTACAGAGG+TGG | + | chr3.3:14427778-14427797 | MS.gene50904:CDS | 55.0% |
| !! | TACAGAGGTGGTGATGGTGC+CGG | + | chr3.3:14427790-14427809 | MS.gene50904:CDS | 55.0% |
| !!! | CAGTTTTGCTGTTGCGGTGC+TGG | + | chr3.3:14429893-14429912 | MS.gene50904:intron | 55.0% |
| !!! | CTGTTTTTGGAGTGCAGCGG+TGG | + | chr3.3:14429776-14429795 | MS.gene50904:intron | 55.0% |
| !!! | GTTTTTGGAGTGCAGCGGTG+GGG | + | chr3.3:14429778-14429797 | MS.gene50904:intron | 55.0% |
| !!! | TTTTGCTGTTGCGGTGCTGG+TGG | + | chr3.3:14429896-14429915 | MS.gene50904:CDS | 55.0% |
| !!! | TTTTTGGAGTGCAGCGGTGG+GGG | + | chr3.3:14429779-14429798 | MS.gene50904:intron | 55.0% |
| CACAAACCGCACCACAGGAC+AGG | - | chr3.3:14429925-14429944 | None:intergenic | 60.0% | |
| CTGCAGCAGTGGCAGTTAGC+AGG | + | chr3.3:14429946-14429965 | MS.gene50904:CDS | 60.0% | |
| CTGTCCTGTGGTGCGGTTTG+TGG | + | chr3.3:14429923-14429942 | MS.gene50904:CDS | 60.0% | |
| GCAGTGGCAGTTAGCAGGTG+CGG | + | chr3.3:14429951-14429970 | MS.gene50904:CDS | 60.0% | |
| GGGTTTGACAAGGTCGGTGG+TGG | + | chr3.3:14427838-14427857 | MS.gene50904:CDS | 60.0% | |
| ! | GGTGGGTTTGACAAGGTCGG+TGG | + | chr3.3:14427835-14427854 | MS.gene50904:CDS | 60.0% |
| !! | TGACAAGGTCGGTGGTGGAG+TGG | + | chr3.3:14427843-14427862 | MS.gene50904:CDS | 60.0% |
| CGGTGCACATCGGCCATGAC+AGG | + | chr3.3:14428013-14428032 | MS.gene50904:CDS | 65.0% | |
| GATTAGAGGAGGGGTCGCCG+CGG | + | chr3.3:14427993-14428012 | MS.gene50904:CDS | 65.0% | |
| GCAGCCACAAACCGCACCAC+AGG | - | chr3.3:14429930-14429949 | None:intergenic | 65.0% | |
| GCGGTTTGTGGCTGCAGCAG+TGG | + | chr3.3:14429935-14429954 | MS.gene50904:CDS | 65.0% | |
| GTCATGGCCGATGTGCACCG+CGG | - | chr3.3:14428013-14428032 | None:intergenic | 65.0% | |
| TGGTGGCCTGTCCTGTGGTG+CGG | + | chr3.3:14429916-14429935 | MS.gene50904:CDS | 65.0% | |
| ! | CGGTGGGGGTTGGGGGTTTT+GGG | + | chr3.3:14429793-14429812 | MS.gene50904:intron | 65.0% |
| !! | GGTGGTGATGGTGCCGGAAG+TGG | + | chr3.3:14427796-14427815 | MS.gene50904:CDS | 65.0% |
| !! | TGCTGTTGCGGTGCTGGTGG+TGG | + | chr3.3:14429899-14429918 | MS.gene50904:CDS | 65.0% |
| AGTGCAGCGGTGGGGGTTGG+GGG | + | chr3.3:14429786-14429805 | MS.gene50904:intron | 70.0% | |
| GAGTGCAGCGGTGGGGGTTG+GGG | + | chr3.3:14429785-14429804 | MS.gene50904:intron | 70.0% | |
| GGAGTGCAGCGGTGGGGGTT+GGG | + | chr3.3:14429784-14429803 | MS.gene50904:intron | 70.0% | |
| TGGAGTGCAGCGGTGGGGGT+TGG | + | chr3.3:14429783-14429802 | MS.gene50904:intron | 70.0% | |
| ! | GCGGTGGGGGTTGGGGGTTT+TGG | + | chr3.3:14429792-14429811 | MS.gene50904:intron | 70.0% |
| !! | GCTGGTGGTGGCCTGTCCTG+TGG | + | chr3.3:14429911-14429930 | MS.gene50904:CDS | 70.0% |
| GGGGTCGCCGCGGTGCACAT+CGG | + | chr3.3:14428003-14428022 | MS.gene50904:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 14427772 | 14430088 | 14427772 | ID=MS.gene50904 |
| chr3.3 | mRNA | 14427772 | 14430088 | 14427772 | ID=MS.gene50904.t1;Parent=MS.gene50904 |
| chr3.3 | exon | 14427772 | 14427900 | 14427772 | ID=MS.gene50904.t1.exon1;Parent=MS.gene50904.t1 |
| chr3.3 | CDS | 14427772 | 14427900 | 14427772 | ID=cds.MS.gene50904.t1;Parent=MS.gene50904.t1 |
| chr3.3 | exon | 14427974 | 14428059 | 14427974 | ID=MS.gene50904.t1.exon2;Parent=MS.gene50904.t1 |
| chr3.3 | CDS | 14427974 | 14428059 | 14427974 | ID=cds.MS.gene50904.t1;Parent=MS.gene50904.t1 |
| chr3.3 | exon | 14429896 | 14430088 | 14429896 | ID=MS.gene50904.t1.exon3;Parent=MS.gene50904.t1 |
| chr3.3 | CDS | 14429896 | 14430088 | 14429896 | ID=cds.MS.gene50904.t1;Parent=MS.gene50904.t1 |
| Gene Sequence |
| Protein sequence |
