Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051613.t1 | XP_003589004.1 | 83.8 | 229 | 37 | 0 | 1 | 229 | 1 | 229 | 6.00E-74 | 287.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051613.t1 | Q94B78 | 82.1 | 56 | 10 | 0 | 236 | 291 | 882 | 937 | 1.6e-19 | 98.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051613.t1 | G7I9Z4 | 83.8 | 229 | 37 | 0 | 1 | 229 | 1 | 229 | 4.3e-74 | 287.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051613 | MS.gene065446 | 0.81182 | 5.78E-51 | -1.69E-46 |
| MS.gene051613 | MS.gene06666 | 0.806145 | 9.48E-50 | -1.69E-46 |
| MS.gene051613 | MS.gene067427 | 0.800352 | 1.50E-48 | -1.69E-46 |
| MS.gene051613 | MS.gene28209 | 0.809761 | 1.61E-50 | -1.69E-46 |
| MS.gene051613 | MS.gene28435 | 0.803816 | 2.91E-49 | -1.69E-46 |
| MS.gene051613 | MS.gene38659 | 0.805948 | 1.04E-49 | -1.69E-46 |
| MS.gene051613 | MS.gene41990 | 0.80736 | 5.25E-50 | -1.69E-46 |
| MS.gene051613 | MS.gene44356 | 0.802435 | 5.62E-49 | -1.69E-46 |
| MS.gene051613 | MS.gene49642 | 0.813179 | 2.92E-51 | -1.69E-46 |
| MS.gene051613 | MS.gene49643 | 0.825432 | 4.70E-54 | -1.69E-46 |
| MS.gene051613 | MS.gene49651 | 0.814823 | 1.27E-51 | -1.69E-46 |
| MS.gene051613 | MS.gene50904 | 0.800927 | 1.15E-48 | -1.69E-46 |
| MS.gene051613 | MS.gene55165 | -0.807046 | 6.12E-50 | -1.69E-46 |
| MS.gene051613 | MS.gene63897 | 0.802543 | 5.34E-49 | -1.69E-46 |
| MS.gene051613 | MS.gene65201 | 0.805147 | 1.54E-49 | -1.69E-46 |
| MS.gene051613 | MS.gene68663 | 0.815324 | 9.80E-52 | -1.69E-46 |
| MS.gene051613 | MS.gene83939 | 0.811854 | 5.68E-51 | -1.69E-46 |
| MS.gene051613 | MS.gene89289 | 0.810556 | 1.09E-50 | -1.69E-46 |
| MS.gene051613 | MS.gene89666 | 0.805804 | 1.12E-49 | -1.69E-46 |
| MS.gene051613 | MS.gene90651 | 0.811955 | 5.40E-51 | -1.69E-46 |
| MS.gene051613 | MS.gene91008 | 0.803115 | 4.07E-49 | -1.69E-46 |
| MS.gene051613 | MS.gene93996 | 0.801312 | 9.55E-49 | -1.69E-46 |
| MS.gene051613 | MS.gene96613 | 0.844361 | 7.93E-59 | -1.69E-46 |
| MS.gene051613 | MS.gene97625 | 0.809724 | 1.64E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051613.t1 | MTR_1g016270 | 89.787 | 235 | 24 | 0 | 1 | 235 | 1 | 235 | 4.49e-124 | 355 |
| MS.gene051613.t1 | MTR_8g097140 | 45.532 | 235 | 84 | 7 | 4 | 234 | 3 | 197 | 2.09e-41 | 143 |
| MS.gene051613.t1 | MTR_1g016280 | 87.719 | 57 | 7 | 0 | 236 | 292 | 26 | 82 | 1.17e-30 | 110 |
| MS.gene051613.t1 | MTR_1g016230 | 83.636 | 55 | 9 | 0 | 237 | 291 | 900 | 954 | 1.41e-22 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051613.t1 | AT4G33010 | 82.143 | 56 | 10 | 0 | 236 | 291 | 882 | 937 | 2.54e-23 | 100 |
| MS.gene051613.t1 | AT4G33010 | 82.143 | 56 | 10 | 0 | 236 | 291 | 882 | 937 | 2.75e-23 | 100 |
| MS.gene051613.t1 | AT2G26080 | 82.143 | 56 | 10 | 0 | 236 | 291 | 888 | 943 | 3.32e-23 | 100 |
| MS.gene051613.t1 | AT5G60030 | 53.968 | 63 | 29 | 0 | 1 | 63 | 1 | 63 | 6.46e-16 | 76.3 |
| MS.gene051613.t1 | AT5G60030 | 57.627 | 59 | 25 | 0 | 1 | 59 | 1 | 59 | 7.28e-16 | 75.5 |
| MS.gene051613.t1 | AT5G60030 | 53.968 | 63 | 29 | 0 | 1 | 63 | 1 | 63 | 9.02e-16 | 76.3 |
| MS.gene051613.t1 | AT1G75335 | 57.627 | 59 | 25 | 0 | 1 | 59 | 1 | 59 | 4.24e-15 | 70.1 |
Find 62 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTGACTTAAGAGGCTTTA+AGG | 0.097607 | 1.3:-5889447 | MS.gene051613:intron |
| GGAAAGAAGAAACTTGAATT+TGG | 0.237098 | 1.3:-5890583 | MS.gene051613:CDS |
| AAGAAGGAAAGGAGTGTAGA+AGG | 0.341318 | 1.3:-5890469 | MS.gene051613:CDS |
| AGACGTTTCACGACATCTTC+AGG | 0.369073 | 1.3:+5889309 | None:intergenic |
| AATGGTGTGAAGAGTGAAAA+TGG | 0.377376 | 1.3:-5890286 | MS.gene051613:CDS |
| TGAAAAGGAGAAGAATTTAG+AGG | 0.379641 | 1.3:-5890362 | MS.gene051613:CDS |
| GTGAAACGTCTCATGGATAA+TGG | 0.380895 | 1.3:-5889297 | MS.gene051613:CDS |
| AAGAAGAAAGGAAGTGAGTT+AGG | 0.388209 | 1.3:-5890550 | MS.gene051613:CDS |
| TATCATCTGTTGTGTGGCTT+CGG | 0.394553 | 1.3:+5890707 | None:intergenic |
| AACAGATGATAGTGGTAGAT+TGG | 0.396815 | 1.3:-5890695 | MS.gene051613:CDS |
| GTTCTCAGGATGTAGAAATT+AGG | 0.411639 | 1.3:-5890252 | MS.gene051613:CDS |
| GAATTCATCGTTGACTTAAG+AGG | 0.416931 | 1.3:-5889455 | MS.gene051613:CDS |
| CTCCTCAGGAGTTTGAAATT+AGG | 0.444891 | 1.3:-5890411 | MS.gene051613:CDS |
| TGGAGGGCTAGTTGGTTCTC+AGG | 0.460306 | 1.3:-5890266 | MS.gene051613:CDS |
| AGAAGAACAAGAAGAAGGAA+AGG | 0.471884 | 1.3:-5890480 | MS.gene051613:CDS |
| GAGAAGCGTGATAAGAAAGA+TGG | 0.475565 | 1.3:-5890604 | MS.gene051613:CDS |
| GTTGTCAGCAGAGACAAAAT+TGG | 0.479329 | 1.3:+5890840 | None:intergenic |
| AAATGAAGTGGGGAGTGAAA+AGG | 0.480460 | 1.3:-5890377 | MS.gene051613:CDS |
| CGAGAAGAAGAACAAGAAGA+AGG | 0.484309 | 1.3:-5890485 | MS.gene051613:CDS |
| GGAGATAGCGTAAAGAAGAA+AGG | 0.485653 | 1.3:-5890562 | MS.gene051613:CDS |
| AGTGAAAATGGAGGGCTAGT+TGG | 0.489017 | 1.3:-5890274 | MS.gene051613:CDS |
| TTTGCAATGTAGAATACTGC+TGG | 0.499869 | 1.3:-5889339 | MS.gene051613:intron |
| ACAGATGATAGTGGTAGATT+GGG | 0.501389 | 1.3:-5890694 | MS.gene051613:CDS |
| GGATAAGTATGCTATTAATT+CGG | 0.505468 | 1.3:+5888601 | None:intergenic |
| CTCATGGATAATGGATTTCA+CGG | 0.505832 | 1.3:-5889288 | MS.gene051613:CDS |
| GAAAGGAAGTGAGTTAGGTC+AGG | 0.510402 | 1.3:-5890545 | MS.gene051613:CDS |
| GTTCGGAGTGATGTTAAACT+TGG | 0.516279 | 1.3:-5890661 | MS.gene051613:CDS |
| GTTAAACTTGGTCGTGAAGT+TGG | 0.522028 | 1.3:-5890649 | MS.gene051613:CDS |
| TGGAGGGATAGTTCCTCCTC+AGG | 0.526446 | 1.3:-5890425 | MS.gene051613:CDS |
| GCTTCATAAGAAGCTTAAAC+CGG | 0.526448 | 1.3:-5890752 | MS.gene051613:CDS |
| TTAAACCGGCGCAGTCTCAC+AGG | 0.535460 | 1.3:-5890738 | MS.gene051613:CDS |
| TTATCTCCTTCGTGCATCCA+CGG | 0.536881 | 1.3:-5890794 | MS.gene051613:CDS |
| ACAATAGCATTGCTTGTGCC+TGG | 0.538450 | 1.3:-5889261 | MS.gene051613:CDS |
| GAGAATGTGAAGGTTGAAAG+TGG | 0.538487 | 1.3:-5890445 | MS.gene051613:CDS |
| TTCTTCCTGTGAGACTGCGC+CGG | 0.543929 | 1.3:+5890733 | None:intergenic |
| GACTCAATCATGAGTGTACC+AGG | 0.546259 | 1.3:+5889243 | None:intergenic |
| ATGTGAAGGTTGAAAGTGGA+GGG | 0.546588 | 1.3:-5890441 | MS.gene051613:CDS |
| TGAAGTTGGTGGTTCTATCG+TGG | 0.560407 | 1.3:-5890635 | MS.gene051613:CDS |
| GTCTACTGAAAGTGAAAGCA+AGG | 0.560958 | 1.3:-5889223 | MS.gene051613:intron |
| GAAGTTGGTGGTTCTATCGT+GGG | 0.565559 | 1.3:-5890634 | MS.gene051613:CDS |
| GAGTTAGGTCAGGACGATGA+AGG | 0.567638 | 1.3:-5890535 | MS.gene051613:CDS |
| GATTGGGCGAAAGTTCTGTT+CGG | 0.577864 | 1.3:-5890678 | MS.gene051613:CDS |
| ACGAGAACAAGACAAAGAAG+TGG | 0.581117 | 1.3:-5890323 | MS.gene051613:CDS |
| AGATGTCGTGAAACGTCTCA+TGG | 0.588391 | 1.3:-5889304 | MS.gene051613:CDS |
| GACGATGAAGGAAGAACGGA+GGG | 0.595325 | 1.3:-5890523 | MS.gene051613:CDS |
| GACCTAATTTCAAACTCCTG+AGG | 0.598620 | 1.3:+5890409 | None:intergenic |
| AAACTTGGTCGTGAAGTTGG+TGG | 0.600549 | 1.3:-5890646 | MS.gene051613:CDS |
| TTGCAATGTAGAATACTGCT+GGG | 0.605364 | 1.3:-5889338 | MS.gene051613:intron |
| AGCCACACAACAGATGATAG+TGG | 0.614962 | 1.3:-5890703 | MS.gene051613:CDS |
| TTTAGAGGTTGAGAATGCGA+AGG | 0.617223 | 1.3:-5890347 | MS.gene051613:CDS |
| TCAGGACGATGAAGGAAGAA+CGG | 0.621358 | 1.3:-5890527 | MS.gene051613:CDS |
| TACCACTATCATCTGTTGTG+TGG | 0.623536 | 1.3:+5890701 | None:intergenic |
| TTAGAGGTTGAGAATGCGAA+GGG | 0.624398 | 1.3:-5890346 | MS.gene051613:CDS |
| ATTGAGCTCGTTGAAAGCCG+TGG | 0.632164 | 1.3:+5890777 | None:intergenic |
| CTAATTTCAAACTCCTGAGG+AGG | 0.638743 | 1.3:+5890412 | None:intergenic |
| GGACGATGAAGGAAGAACGG+AGG | 0.651421 | 1.3:-5890524 | MS.gene051613:CDS |
| GTTGGTGGTTCTATCGTGGG+TGG | 0.664797 | 1.3:-5890631 | MS.gene051613:CDS |
| TGTAGAAGGTGAGAATGTGA+AGG | 0.671362 | 1.3:-5890455 | MS.gene051613:CDS |
| TGAAAGCCGTGGATGCACGA+AGG | 0.685445 | 1.3:+5890788 | None:intergenic |
| GTGTGAAGAGTGAAAATGGA+GGG | 0.692434 | 1.3:-5890282 | MS.gene051613:CDS |
| AATGTGAAGGTTGAAAGTGG+AGG | 0.718185 | 1.3:-5890442 | MS.gene051613:CDS |
| GGTGTGAAGAGTGAAAATGG+AGG | 0.782075 | 1.3:-5890283 | MS.gene051613:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATAATTATATGATTAAT+TGG | + | chr1.3:5890137-5890156 | None:intergenic | 10.0% |
| !! | AATAAATTAAATGTTGTAGA+GGG | - | chr1.3:5889326-5889345 | MS.gene051613:CDS | 15.0% |
| !! | CATTCACAAAAACAAAATAT+AGG | + | chr1.3:5889827-5889846 | None:intergenic | 20.0% |
| !! | GAACAGAAAGAAAAAAAAAA+TGG | + | chr1.3:5890893-5890912 | None:intergenic | 20.0% |
| !! | GAATAAATTAAATGTTGTAG+AGG | - | chr1.3:5889325-5889344 | MS.gene051613:CDS | 20.0% |
| !! | GTAAACAAACTATCAAAATA+AGG | + | chr1.3:5890547-5890566 | None:intergenic | 20.0% |
| !! | TAAAAAGTGGAAATAAGATT+TGG | - | chr1.3:5890683-5890702 | MS.gene051613:CDS | 20.0% |
| !! | TAAATTCCTCTTATGTTATA+TGG | + | chr1.3:5889607-5889626 | None:intergenic | 20.0% |
| !!! | AATCTTTTTCAATTTTGATC+AGG | - | chr1.3:5889532-5889551 | MS.gene051613:intron | 20.0% |
| !!! | AGAAATGTTGATTTAGATAT+AGG | - | chr1.3:5890716-5890735 | MS.gene051613:CDS | 20.0% |
| !!! | TTTTTTTTTTCTTTCTGTTC+AGG | - | chr1.3:5890893-5890912 | MS.gene051613:CDS | 20.0% |
| ! | AAAAAAAAACTCTTCTTCCT+AGG | + | chr1.3:5890346-5890365 | None:intergenic | 25.0% |
| ! | AAAATGAAAAGAAAACACGA+GGG | - | chr1.3:5889419-5889438 | MS.gene051613:intron | 25.0% |
| ! | AAACAACTTCAATCATCAAA+TGG | + | chr1.3:5890109-5890128 | None:intergenic | 25.0% |
| ! | TAAAGTATGAATGAAAACCA+AGG | + | chr1.3:5889987-5890006 | None:intergenic | 25.0% |
| ! | TATAATAGTAAATTCGCCTT+TGG | + | chr1.3:5890520-5890539 | None:intergenic | 25.0% |
| ! | TATACTTGTAACACTTGATT+TGG | - | chr1.3:5890816-5890835 | MS.gene051613:CDS | 25.0% |
| ! | TGACAAAAACAATGTAATAG+AGG | + | chr1.3:5889640-5889659 | None:intergenic | 25.0% |
| !! | ATGATAAGTTTTCACTTGTA+AGG | - | chr1.3:5889731-5889750 | MS.gene051613:intron | 25.0% |
| !!! | ACATTGTTTTTGTCATACTA+GGG | - | chr1.3:5889645-5889664 | MS.gene051613:intron | 25.0% |
| !!! | TACATTGTTTTTGTCATACT+AGG | - | chr1.3:5889644-5889663 | MS.gene051613:intron | 25.0% |
| AATGAGCATACATTGAAGTT+AGG | + | chr1.3:5890442-5890461 | None:intergenic | 30.0% | |
| AGAAAAAAAAAATGGCTGAG+TGG | + | chr1.3:5890885-5890904 | None:intergenic | 30.0% | |
| AGATGCAGTGTTATAAGTTA+CGG | - | chr1.3:5889880-5889899 | MS.gene051613:intron | 30.0% | |
| CATATATGATCCTAGAAACA+CGG | + | chr1.3:5889959-5889978 | None:intergenic | 30.0% | |
| CTAGAAACACGGAAAAAAAT+TGG | + | chr1.3:5889948-5889967 | None:intergenic | 30.0% | |
| GAAAAAAAAAATGGCTGAGT+GGG | + | chr1.3:5890884-5890903 | None:intergenic | 30.0% | |
| GAAAATGAAAAGAAAACACG+AGG | - | chr1.3:5889418-5889437 | MS.gene051613:intron | 30.0% | |
| GGAAAGAAGAAACTTGAATT+TGG | - | chr1.3:5888942-5888961 | MS.gene051613:intron | 30.0% | |
| GTACTACCATATAACATAAG+AGG | - | chr1.3:5889598-5889617 | MS.gene051613:intron | 30.0% | |
| GTGGACAAAAAACTAAGTAA+TGG | - | chr1.3:5889221-5889240 | MS.gene051613:intron | 30.0% | |
| TCGAAAAAGAGAAATGAAGT+GGG | - | chr1.3:5889137-5889156 | MS.gene051613:intron | 30.0% | |
| TGAAAAGGAGAAGAATTTAG+AGG | - | chr1.3:5889163-5889182 | MS.gene051613:intron | 30.0% | |
| TGTTTACTAGATTCACTTGA+TGG | - | chr1.3:5889685-5889704 | MS.gene051613:intron | 30.0% | |
| TTTAGATATAGGATTGCTTG+AGG | - | chr1.3:5890727-5890746 | MS.gene051613:CDS | 30.0% | |
| ! | CTCATTGACTAACTCATTTA+AGG | - | chr1.3:5890456-5890475 | MS.gene051613:CDS | 30.0% |
| !!! | ACACTTGATTTGGATCTTTT+TGG | - | chr1.3:5890826-5890845 | MS.gene051613:CDS | 30.0% |
| !!! | CAATTTTTTTCCGTGTTTCT+AGG | - | chr1.3:5889946-5889965 | MS.gene051613:intron | 30.0% |
| !!! | CATTGTTTTTGTCATACTAG+GGG | - | chr1.3:5889646-5889665 | MS.gene051613:intron | 30.0% |
| !!! | CTCATTTAAGGTTTTGACTT+AGG | - | chr1.3:5890468-5890487 | MS.gene051613:CDS | 30.0% |
| AAATGTTGTAGAGGGAAAGA+CGG | - | chr1.3:5889334-5889353 | MS.gene051613:intron | 35.0% | |
| AAGAAGAAAGGAAGTGAGTT+AGG | - | chr1.3:5888975-5888994 | MS.gene051613:intron | 35.0% | |
| AATGGTGTGAAGAGTGAAAA+TGG | - | chr1.3:5889239-5889258 | MS.gene051613:CDS | 35.0% | |
| AGAAGAACAAGAAGAAGGAA+AGG | - | chr1.3:5889045-5889064 | MS.gene051613:intron | 35.0% | |
| CGAAAAAGAGAAATGAAGTG+GGG | - | chr1.3:5889138-5889157 | MS.gene051613:intron | 35.0% | |
| CGAGGGTTAAGCTTAAATTT+AGG | - | chr1.3:5889436-5889455 | MS.gene051613:intron | 35.0% | |
| GAAAGCAAGGTATGCATATA+TGG | - | chr1.3:5890315-5890334 | MS.gene051613:CDS | 35.0% | |
| GAGCAAAAGAAACACAAACA+AGG | + | chr1.3:5890372-5890391 | None:intergenic | 35.0% | |
| GCTTCATAAGAAGCTTAAAC+CGG | - | chr1.3:5888773-5888792 | MS.gene051613:intron | 35.0% | |
| GGATCATATATGATGAACCT+TGG | - | chr1.3:5889967-5889986 | MS.gene051613:intron | 35.0% | |
| GTAGTGTCATATAACATCAG+AGG | - | chr1.3:5889780-5889799 | MS.gene051613:intron | 35.0% | |
| GTCGAAAAAGAGAAATGAAG+TGG | - | chr1.3:5889136-5889155 | MS.gene051613:intron | 35.0% | |
| GTTATTTATGACTTCCTCCT+CGG | + | chr1.3:5889912-5889931 | None:intergenic | 35.0% | |
| GTTCTCAGGATGTAGAAATT+AGG | - | chr1.3:5889273-5889292 | MS.gene051613:CDS | 35.0% | |
| GTTTCCATCAAGATCTTGAA+CGG | - | chr1.3:5890651-5890670 | MS.gene051613:CDS | 35.0% | |
| TATTTGTGCATTCTGTCCAA+AGG | - | chr1.3:5890501-5890520 | MS.gene051613:CDS | 35.0% | |
| TGGACAGAATGCACAAATAA+AGG | + | chr1.3:5890500-5890519 | None:intergenic | 35.0% | |
| TTGCAATGTAGAATACTGCT+GGG | - | chr1.3:5890187-5890206 | MS.gene051613:intron | 35.0% | |
| TTGTAAGGTTGCTTACAATG+TGG | - | chr1.3:5889746-5889765 | MS.gene051613:intron | 35.0% | |
| TTTCCATCAAGATCTTGAAC+GGG | - | chr1.3:5890652-5890671 | MS.gene051613:CDS | 35.0% | |
| TTTGCAATGTAGAATACTGC+TGG | - | chr1.3:5890186-5890205 | MS.gene051613:intron | 35.0% | |
| ! | AATTTTGTCTCTGCTGACAA+CGG | - | chr1.3:5888687-5888706 | MS.gene051613:intron | 35.0% |
| ! | ATCAGGAATTTTCACTTGCA+AGG | - | chr1.3:5889549-5889568 | MS.gene051613:intron | 35.0% |
| ! | TGATGGCTGTTAAATCGTTT+TGG | - | chr1.3:5889702-5889721 | MS.gene051613:intron | 35.0% |
| !! | AACAGATGATAGTGGTAGAT+TGG | - | chr1.3:5888830-5888849 | MS.gene051613:intron | 35.0% |
| !! | ACAGATGATAGTGGTAGATT+GGG | - | chr1.3:5888831-5888850 | MS.gene051613:intron | 35.0% |
| !! | CTCATGGATAATGGATTTCA+CGG | - | chr1.3:5890237-5890256 | MS.gene051613:CDS | 35.0% |
| !! | GAATTCATCGTTGACTTAAG+AGG | - | chr1.3:5890070-5890089 | MS.gene051613:intron | 35.0% |
| AAAAACTCTTCTTCCTAGGC+AGG | + | chr1.3:5890342-5890361 | None:intergenic | 40.0% | |
| AAATGAAGTGGGGAGTGAAA+AGG | - | chr1.3:5889148-5889167 | MS.gene051613:intron | 40.0% | |
| AATGTGAAGGTTGAAAGTGG+AGG | - | chr1.3:5889083-5889102 | MS.gene051613:intron | 40.0% | |
| ACGAGAACAAGACAAAGAAG+TGG | - | chr1.3:5889202-5889221 | MS.gene051613:intron | 40.0% | |
| ACGGGTGAAGCTATAAAAAG+TGG | - | chr1.3:5890670-5890689 | MS.gene051613:CDS | 40.0% | |
| AGCATACATTGAAGTTAGGC+AGG | + | chr1.3:5890438-5890457 | None:intergenic | 40.0% | |
| ATGTGAAGGTTGAAAGTGGA+GGG | - | chr1.3:5889084-5889103 | MS.gene051613:intron | 40.0% | |
| CGAGAAGAAGAACAAGAAGA+AGG | - | chr1.3:5889040-5889059 | MS.gene051613:intron | 40.0% | |
| CTAATTTCAAACTCCTGAGG+AGG | + | chr1.3:5889116-5889135 | None:intergenic | 40.0% | |
| GACCTAATTTCAAACTCCTG+AGG | + | chr1.3:5889119-5889138 | None:intergenic | 40.0% | |
| GACTTCGCGGAAAAGAATTA+GGG | + | chr1.3:5890032-5890051 | None:intergenic | 40.0% | |
| GAGAATGTGAAGGTTGAAAG+TGG | - | chr1.3:5889080-5889099 | MS.gene051613:intron | 40.0% | |
| GGAGATAGCGTAAAGAAGAA+AGG | - | chr1.3:5888963-5888982 | MS.gene051613:intron | 40.0% | |
| GTCTACTGAAAGTGAAAGCA+AGG | - | chr1.3:5890302-5890321 | MS.gene051613:CDS | 40.0% | |
| GTGAAACGTCTCATGGATAA+TGG | - | chr1.3:5890228-5890247 | MS.gene051613:CDS | 40.0% | |
| GTGTGAAGAGTGAAAATGGA+GGG | - | chr1.3:5889243-5889262 | MS.gene051613:CDS | 40.0% | |
| GTTAAACTTGGTCGTGAAGT+TGG | - | chr1.3:5888876-5888895 | MS.gene051613:intron | 40.0% | |
| GTTCGGAGTGATGTTAAACT+TGG | - | chr1.3:5888864-5888883 | MS.gene051613:intron | 40.0% | |
| GTTGTCAGCAGAGACAAAAT+TGG | + | chr1.3:5888688-5888707 | None:intergenic | 40.0% | |
| TACCACTATCATCTGTTGTG+TGG | + | chr1.3:5888827-5888846 | None:intergenic | 40.0% | |
| TATCATCTGTTGTGTGGCTT+CGG | + | chr1.3:5888821-5888840 | None:intergenic | 40.0% | |
| TGACTTCGCGGAAAAGAATT+AGG | + | chr1.3:5890033-5890052 | None:intergenic | 40.0% | |
| TGTAGAAGGTGAGAATGTGA+AGG | - | chr1.3:5889070-5889089 | MS.gene051613:intron | 40.0% | |
| TTAGAGGTTGAGAATGCGAA+GGG | - | chr1.3:5889179-5889198 | MS.gene051613:intron | 40.0% | |
| TTTAGAGGTTGAGAATGCGA+AGG | - | chr1.3:5889178-5889197 | MS.gene051613:intron | 40.0% | |
| ! | AAGAAGGAAAGGAGTGTAGA+AGG | - | chr1.3:5889056-5889075 | MS.gene051613:intron | 40.0% |
| ! | CGAAAAAGAAGCATGAAGCT+GGG | - | chr1.3:5889297-5889316 | MS.gene051613:CDS | 40.0% |
| ! | CTCCTCAGGAGTTTGAAATT+AGG | - | chr1.3:5889114-5889133 | MS.gene051613:intron | 40.0% |
| ! | GAGAAGCGTGATAAGAAAGA+TGG | - | chr1.3:5888921-5888940 | MS.gene051613:intron | 40.0% |
| ! | TCGAAAAAGAAGCATGAAGC+TGG | - | chr1.3:5889296-5889315 | MS.gene051613:CDS | 40.0% |
| !! | CAACTGTTTCATTGACTTCG+CGG | + | chr1.3:5890045-5890064 | None:intergenic | 40.0% |
| !! | CGTTGACTTAAGAGGCTTTA+AGG | - | chr1.3:5890078-5890097 | MS.gene051613:intron | 40.0% |
| AAAAAATGGCTGAGTGGGAG+AGG | + | chr1.3:5890879-5890898 | None:intergenic | 45.0% | |
| AAACTTGGTCGTGAAGTTGG+TGG | - | chr1.3:5888879-5888898 | MS.gene051613:intron | 45.0% | |
| AAGACGTGGAAGAGAGATCT+GGG | - | chr1.3:5889381-5889400 | MS.gene051613:intron | 45.0% | |
| ACAATAGCATTGCTTGTGCC+TGG | - | chr1.3:5890264-5890283 | MS.gene051613:CDS | 45.0% | |
| AGACGTTTCACGACATCTTC+AGG | + | chr1.3:5890219-5890238 | None:intergenic | 45.0% | |
| AGATGTCGTGAAACGTCTCA+TGG | - | chr1.3:5890221-5890240 | MS.gene051613:intron | 45.0% | |
| AGCCACACAACAGATGATAG+TGG | - | chr1.3:5888822-5888841 | MS.gene051613:intron | 45.0% | |
| ATAAGTTACGGAATCAGCCG+AGG | - | chr1.3:5889892-5889911 | MS.gene051613:intron | 45.0% | |
| ATGCATATATGGACCTGCCT+AGG | - | chr1.3:5890326-5890345 | MS.gene051613:CDS | 45.0% | |
| GAAAGGAAGTGAGTTAGGTC+AGG | - | chr1.3:5888980-5888999 | MS.gene051613:intron | 45.0% | |
| GAAGAGGAAGAATGAAGACG+TGG | - | chr1.3:5889367-5889386 | MS.gene051613:intron | 45.0% | |
| GACTCAATCATGAGTGTACC+AGG | + | chr1.3:5890285-5890304 | None:intergenic | 45.0% | |
| GATTGGGCGAAAGTTCTGTT+CGG | - | chr1.3:5888847-5888866 | MS.gene051613:intron | 45.0% | |
| GGTGTGAAGAGTGAAAATGG+AGG | - | chr1.3:5889242-5889261 | MS.gene051613:CDS | 45.0% | |
| TCACCCGTTCAAGATCTTGA+TGG | + | chr1.3:5890658-5890677 | None:intergenic | 45.0% | |
| TCAGGACGATGAAGGAAGAA+CGG | - | chr1.3:5888998-5889017 | MS.gene051613:intron | 45.0% | |
| TTATCTCCTTCGTGCATCCA+CGG | - | chr1.3:5888731-5888750 | MS.gene051613:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1.3:5889489-5889508 | None:intergenic | 45.0% |
| ! | AGTGAAAATGGAGGGCTAGT+TGG | - | chr1.3:5889251-5889270 | MS.gene051613:CDS | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1.3:5889490-5889509 | None:intergenic | 45.0% |
| !! | GAAGTTGGTGGTTCTATCGT+GGG | - | chr1.3:5888891-5888910 | MS.gene051613:intron | 45.0% |
| !! | TGAAGTTGGTGGTTCTATCG+TGG | - | chr1.3:5888890-5888909 | MS.gene051613:intron | 45.0% |
| AACATTTGGCTGAGTGGGAG+AGG | - | chr1.3:5890792-5890811 | MS.gene051613:CDS | 50.0% | |
| ACATTTGGCTGAGTGGGAGA+GGG | - | chr1.3:5890793-5890812 | MS.gene051613:CDS | 50.0% | |
| AGACGGAGCAAAGGAAGAAG+AGG | - | chr1.3:5889351-5889370 | MS.gene051613:intron | 50.0% | |
| AGACGTGGAAGAGAGATCTG+GGG | - | chr1.3:5889382-5889401 | MS.gene051613:intron | 50.0% | |
| AGCAGGAACATTTGGCTGAG+TGG | - | chr1.3:5890786-5890805 | MS.gene051613:CDS | 50.0% | |
| ATTGAGCTCGTTGAAAGCCG+TGG | + | chr1.3:5888751-5888770 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1.3:5889488-5889507 | MS.gene051613:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr1.3:5889485-5889504 | None:intergenic | 50.0% | |
| GAAGACGTGGAAGAGAGATC+TGG | - | chr1.3:5889380-5889399 | MS.gene051613:intron | 50.0% | |
| GACGATGAAGGAAGAACGGA+GGG | - | chr1.3:5889002-5889021 | MS.gene051613:intron | 50.0% | |
| GAGTTAGGTCAGGACGATGA+AGG | - | chr1.3:5888990-5889009 | MS.gene051613:intron | 50.0% | |
| GCAGGAACATTTGGCTGAGT+GGG | - | chr1.3:5890787-5890806 | MS.gene051613:CDS | 50.0% | |
| GCCAAATGTTCCTGCTGTTC+AGG | + | chr1.3:5890782-5890801 | None:intergenic | 50.0% | |
| GCCTGAACAGCAGGAACATT+TGG | - | chr1.3:5890778-5890797 | MS.gene051613:CDS | 50.0% | |
| TAGAGGGAAAGACGGAGCAA+AGG | - | chr1.3:5889342-5889361 | MS.gene051613:intron | 50.0% | |
| TTGCAAGGTTGCTTACAGCG+TGG | - | chr1.3:5889564-5889583 | MS.gene051613:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1.3:5889491-5889510 | None:intergenic | 50.0% |
| AGTTACGGAATCAGCCGAGG+AGG | - | chr1.3:5889895-5889914 | MS.gene051613:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1.3:5889483-5889502 | MS.gene051613:intron | 55.0% | |
| GATAGCCGACCCCACTTAGT+GGG | - | chr1.3:5889477-5889496 | MS.gene051613:intron | 55.0% | |
| GGACGATGAAGGAAGAACGG+AGG | - | chr1.3:5889001-5889020 | MS.gene051613:intron | 55.0% | |
| TGAAAGCCGTGGATGCACGA+AGG | + | chr1.3:5888740-5888759 | None:intergenic | 55.0% | |
| TGATAGCCGACCCCACTTAG+TGG | - | chr1.3:5889476-5889495 | MS.gene051613:intron | 55.0% | |
| TGGAGGGATAGTTCCTCCTC+AGG | - | chr1.3:5889100-5889119 | MS.gene051613:intron | 55.0% | |
| TTAAACCGGCGCAGTCTCAC+AGG | - | chr1.3:5888787-5888806 | MS.gene051613:intron | 55.0% | |
| TTCTTCCTGTGAGACTGCGC+CGG | + | chr1.3:5888795-5888814 | None:intergenic | 55.0% | |
| !! | GTTGGTGGTTCTATCGTGGG+TGG | - | chr1.3:5888894-5888913 | MS.gene051613:intron | 55.0% |
| !! | TGGAGGGCTAGTTGGTTCTC+AGG | - | chr1.3:5889259-5889278 | MS.gene051613:CDS | 55.0% |
| ! | TGAGAGCACGCCTGAACAGC+AGG | - | chr1.3:5890769-5890788 | MS.gene051613:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 5888615 | 5890932 | 5888615 | ID=MS.gene051613 |
| chr1.3 | mRNA | 5888615 | 5890932 | 5888615 | ID=MS.gene051613.t1;Parent=MS.gene051613 |
| chr1.3 | exon | 5890227 | 5890932 | 5890227 | ID=MS.gene051613.t1.exon1;Parent=MS.gene051613.t1 |
| chr1.3 | CDS | 5890227 | 5890932 | 5890227 | ID=cds.MS.gene051613.t1;Parent=MS.gene051613.t1 |
| chr1.3 | exon | 5889448 | 5889485 | 5889448 | ID=MS.gene051613.t1.exon2;Parent=MS.gene051613.t1 |
| chr1.3 | CDS | 5889448 | 5889485 | 5889448 | ID=cds.MS.gene051613.t1;Parent=MS.gene051613.t1 |
| chr1.3 | exon | 5889224 | 5889349 | 5889224 | ID=MS.gene051613.t1.exon3;Parent=MS.gene051613.t1 |
| chr1.3 | CDS | 5889224 | 5889349 | 5889224 | ID=cds.MS.gene051613.t1;Parent=MS.gene051613.t1 |
| chr1.3 | exon | 5888615 | 5888632 | 5888615 | ID=MS.gene051613.t1.exon4;Parent=MS.gene051613.t1 |
| chr1.3 | CDS | 5888615 | 5888632 | 5888615 | ID=cds.MS.gene051613.t1;Parent=MS.gene051613.t1 |
| Gene Sequence |
| Protein sequence |
