AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51052

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51052.t1 MTR_4g107840 97.131 244 7 0 1 244 1 244 1.27e-179 493
MS.gene51052.t1 MTR_8g469150 34.982 283 138 5 1 244 1 276 6.97e-49 162
MS.gene51052.t1 MTR_7g009330 35.106 282 137 6 2 244 3 277 1.56e-47 159
MS.gene51052.t1 MTR_6g011390 34.035 285 140 6 1 244 1 278 2.27e-46 155
MS.gene51052.t1 MTR_8g469150 34.457 267 130 4 1 228 1 261 1.77e-45 153
MS.gene51052.t1 MTR_5g015580 26.855 283 161 5 1 244 1 276 8.60e-30 112
MS.gene51052.t1 MTR_1g018205 25.177 282 165 5 2 244 3 277 2.86e-24 98.2
MS.gene51052.t1 MTR_4g128300 24.742 291 160 5 1 244 1 279 4.11e-22 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51052.t1 AT3G01280 35.689 283 136 6 1 244 1 276 1.14e-50 167
MS.gene51052.t1 AT5G15090 31.802 283 145 7 1 244 1 274 5.59e-41 142
MS.gene51052.t1 AT5G15090 31.802 283 145 7 1 244 1 274 5.59e-41 142
MS.gene51052.t1 AT5G67500 28.421 285 154 6 1 244 1 276 9.10e-32 118
MS.gene51052.t1 AT5G57490 27.682 289 149 7 1 244 1 274 1.24e-29 112
MS.gene51052.t1 AT5G67500 26.774 310 154 6 1 244 1 303 5.37e-28 108
MS.gene51052.t1 AT5G67500 27.509 269 146 5 1 228 1 261 4.85e-27 106
MS.gene51052.t1 AT3G49920 28.279 244 157 3 1 244 1 226 6.74e-19 82.8

Find 69 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCCGGCGAAATGGATTT+TGG 0.152016 8.4:-19342609 MS.gene51052:CDS
ACTGGATGCATTGGATTATT+AGG 0.191506 8.4:-19343199 MS.gene51052:CDS
CTCTCATTCAACAAGGATTT+TGG 0.192793 8.4:-19342650 MS.gene51052:CDS
CGAGCCTTTAGCAATGTTTC+AGG 0.209136 8.4:+19342699 None:intergenic
TTGCAATGGCCGTCTGGGTT+AGG 0.244222 8.4:+19342790 None:intergenic
AATAGATTCACTGGGATTAC+TGG 0.244615 8.4:-19343217 MS.gene51052:CDS
CTTGTGTTGCAATGGCCGTC+TGG 0.310688 8.4:+19342784 None:intergenic
TGCAATGGCCGTCTGGGTTA+GGG 0.312768 8.4:+19342791 None:intergenic
TCACTTTCACTACCAATTCA+TGG 0.317926 8.4:-19344172 MS.gene51052:CDS
AAGAAATTCTACCTGGATTC+AGG 0.317980 8.4:-19343407 MS.gene51052:CDS
GACCCTGTTGTAAAATTATC+AGG 0.320742 8.4:-19343157 MS.gene51052:CDS
ACAGAATGCTTGTTCCTAAA+AGG 0.329840 8.4:+19343134 None:intergenic
GGGGTTTACTTCATGATAAA+TGG 0.338544 8.4:+19342812 None:intergenic
AAAGGCTCGCTTTGACAGTT+CGG 0.382952 8.4:-19342685 MS.gene51052:CDS
CTGCATTCCAATCCATGAAT+TGG 0.405723 8.4:+19344160 None:intergenic
TGTAACTATGGCCGGCGAAA+TGG 0.408333 8.4:-19342616 MS.gene51052:CDS
AAGGCTCGCTTTGACAGTTC+GGG 0.409065 8.4:-19342684 MS.gene51052:CDS
TTCACTACCAATTCATGGAT+TGG 0.415231 8.4:-19344167 MS.gene51052:CDS
AATGGTACCTTCCCGGAGTC+TGG 0.421783 8.4:+19343363 None:intergenic
ACCAAGTTGACTGCTGGCTT+CGG 0.424833 8.4:-19343067 MS.gene51052:CDS
GCAAGGCAACATTGGCTCCT+AGG 0.425523 8.4:+19343110 None:intergenic
CCTGGTGTATATTCTAATCT+TGG 0.430429 8.4:-19344348 MS.gene51052:CDS
CAATTCATGGATTGGAATGC+AGG 0.439436 8.4:-19344159 MS.gene51052:CDS
ACAAAGTAATGGTACCTTCC+CGG 0.441553 8.4:+19343356 None:intergenic
ATATTCTAATCTTGGCGATA+AGG 0.441721 8.4:-19344340 MS.gene51052:CDS
AGCTTGTCACTCAAGGAAAC+TGG 0.442221 8.4:-19342753 MS.gene51052:CDS
ACTGGGATTACTGGATGCAT+TGG 0.448328 8.4:-19343208 MS.gene51052:CDS
CAGGGTCATATGCTCCATCT+TGG 0.460843 8.4:+19343173 None:intergenic
ACAAGGTCAATGAAGCTTCA+AGG 0.465289 8.4:+19343029 None:intergenic
GCCATGGAGACTCCAACCTT+TGG 0.474824 8.4:+19342567 None:intergenic
CAGTACTTGAATAGATTCAC+TGG 0.475573 8.4:-19343226 MS.gene51052:CDS
AACTTGGTTATCGATCTTGT+TGG 0.497298 8.4:+19343082 None:intergenic
TTTGACAGTTCGGGCAAAGT+AGG 0.498953 8.4:-19342675 MS.gene51052:CDS
AGCAAAATGAGCAAGAGTCC+TGG 0.500833 8.4:-19344366 None:intergenic
GCAATGGCCGTCTGGGTTAG+GGG 0.501382 8.4:+19342792 None:intergenic
CAAGGCAACATTGGCTCCTA+GGG 0.505987 8.4:+19343111 None:intergenic
TTTATTAGATTGTCTTTACA+AGG 0.506198 8.4:-19344217 MS.gene51052:intron
GCCGAAGCCAGCAGTCAACT+TGG 0.507792 8.4:+19343066 None:intergenic
AATTGGTAGTGAAAGTGAAT+AGG 0.508379 8.4:+19344177 None:intergenic
TTGTGTTGCAATGGCCGTCT+GGG 0.533482 8.4:+19342785 None:intergenic
GGAACAAGCATTCTGTCCCT+AGG 0.535981 8.4:-19343127 MS.gene51052:CDS
AAGGAAACTGGTGTCACCAT+TGG 0.538400 8.4:-19342741 MS.gene51052:CDS
AAATGTACCGTACCAGACTC+CGG 0.544121 8.4:-19343375 MS.gene51052:CDS
CAATGGCCGTCTGGGTTAGG+GGG 0.545151 8.4:+19342793 None:intergenic
TTGAAAACAGTCCTGAATCC+AGG 0.545165 8.4:+19343396 None:intergenic
ACAGTTCAAGAAATTCTACC+TGG 0.548340 8.4:-19343414 MS.gene51052:intron
TCGATAACCAAGTTGACTGC+TGG 0.549363 8.4:-19343073 MS.gene51052:CDS
GGCCCCAAAATCCATTTCGC+CGG 0.561250 8.4:+19342605 None:intergenic
CGATCTTGTTGGTATGTGCA+AGG 0.562305 8.4:+19343093 None:intergenic
AACCTTTGGAATCTTATCAT+CGG 0.566666 8.4:+19342581 None:intergenic
AAATGCATGCTGAGCACCAA+TGG 0.571123 8.4:+19342725 None:intergenic
AATGCAGGCTTCTCATGTAA+AGG 0.571808 8.4:-19344144 MS.gene51052:intron
GGATTATTAGGAAACCAAGA+TGG 0.572580 8.4:-19343187 MS.gene51052:CDS
TCCAAAGGTTGGAGTCTCCA+TGG 0.577690 8.4:-19342568 MS.gene51052:CDS
ATGCTTCACTTGTGTTGCAA+TGG 0.577920 8.4:+19342776 None:intergenic
GATGATAAGATTCCAAAGGT+TGG 0.579129 8.4:-19342579 MS.gene51052:CDS
AATCTTGGCGATAAGGCCAA+AGG 0.579547 8.4:-19344333 MS.gene51052:intron
AGATTAGGGTCTTAGAGCCA+TGG 0.589733 8.4:+19342551 None:intergenic
AATGTACCGTACCAGACTCC+GGG 0.592748 8.4:-19343374 MS.gene51052:CDS
CTTTGGAATCTTATCATCGG+TGG 0.598433 8.4:+19342584 None:intergenic
GAAGCATAGCTTGTCACTCA+AGG 0.598774 8.4:-19342760 MS.gene51052:CDS
TACCTTCCCGGAGTCTGGTA+CGG 0.603084 8.4:+19343368 None:intergenic
GGTCAATGAAGCTTCAAGGA+AGG 0.612698 8.4:+19343033 None:intergenic
AGTACTTGAATAGATTCACT+GGG 0.614520 8.4:-19343225 MS.gene51052:CDS
TGGTATGTGCAAGGCAACAT+TGG 0.624437 8.4:+19343102 None:intergenic
CCAAGATTAGAATATACACC+AGG 0.632111 8.4:+19344348 None:intergenic
CACCGATGATAAGATTCCAA+AGG 0.660499 8.4:-19342583 MS.gene51052:CDS
TACCGTACCAGACTCCGGGA+AGG 0.677553 8.4:-19343370 MS.gene51052:intron
GTAGGTGCTCTCATTCAACA+AGG 0.711960 8.4:-19342657 MS.gene51052:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCACATTATTTAAATCA+AGG - chr8.4:19343133-19343152 MS.gene51052:CDS 15.0%
!! TATCACATTATTTAAATCAA+GGG - chr8.4:19343134-19343153 MS.gene51052:CDS 15.0%
!! TTAAATATTTCATATTATGC+AGG - chr8.4:19344051-19344070 MS.gene51052:intron 15.0%
!!! ATTTTTCTGATAAATTTAGT+CGG + chr8.4:19343933-19343952 None:intergenic 15.0%
!!! TACTTTTATTTTTCTACTTA+TGG - chr8.4:19342904-19342923 MS.gene51052:intron 15.0%
!!! TTTCTATACATATTTCTAAA+CGG + chr8.4:19343359-19343378 None:intergenic 15.0%
!! AATTTATCAGAAAAATGGAT+AGG - chr8.4:19343937-19343956 MS.gene51052:intron 20.0%
!! ATTTCAGTATAATACTAGTA+AGG + chr8.4:19342663-19342682 None:intergenic 20.0%
!! GACTAAATTTATCAGAAAAA+TGG - chr8.4:19343932-19343951 MS.gene51052:intron 20.0%
!! TGATACTATACATAGTATAT+AGG + chr8.4:19343589-19343608 None:intergenic 20.0%
!! TTTATTAGATTGTCTTTACA+AGG - chr8.4:19342697-19342716 MS.gene51052:CDS 20.0%
! AAAGATAGAAAATGGAATGA+TGG + chr8.4:19343079-19343098 None:intergenic 25.0%
! AAGATAGAAAATGGAATGAT+GGG + chr8.4:19343078-19343097 None:intergenic 25.0%
! AGACTACAAAAGATAGAAAA+TGG + chr8.4:19343087-19343106 None:intergenic 25.0%
! ATATCAACTTAGCTTATGTT+TGG - chr8.4:19342801-19342820 MS.gene51052:CDS 25.0%
! ATGGAATTTGATAAAACCTT+TGG + chr8.4:19342600-19342619 None:intergenic 25.0%
! CAATCTTCATTTCATATGAT+TGG - chr8.4:19343268-19343287 MS.gene51052:intron 25.0%
! GAGAAAGTTTGAAAAATTTG+AGG + chr8.4:19343056-19343075 None:intergenic 25.0%
! TAGAATTTCTTGAACTGTAA+TGG + chr8.4:19343498-19343517 None:intergenic 25.0%
! TATAGGTAAGTACAAAGTAA+TGG + chr8.4:19343572-19343591 None:intergenic 25.0%
! TATGAATTCATTGTGATTTG+AGG + chr8.4:19343658-19343677 None:intergenic 25.0%
! TCAAATCACAATGAATTCAT+AGG - chr8.4:19343657-19343676 MS.gene51052:intron 25.0%
!! AGGGTTCTAATAAATTAACA+TGG + chr8.4:19343420-19343439 None:intergenic 25.0%
!! CATTGAATGGTATTTTGTTA+TGG + chr8.4:19343193-19343212 None:intergenic 25.0%
!! TTCTAAAGATTCAAATGGAA+TGG + chr8.4:19342619-19342638 None:intergenic 25.0%
!!! TATGATGGATATATCTTACA+AGG + chr8.4:19343905-19343924 None:intergenic 25.0%
AATCACAATGAATTCATAGG+TGG - chr8.4:19343660-19343679 MS.gene51052:intron 30.0%
ACTTCCAACAGAATAACATT+TGG + chr8.4:19342958-19342977 None:intergenic 30.0%
AGTACTTGAATAGATTCACT+GGG - chr8.4:19343689-19343708 MS.gene51052:intron 30.0%
ATATTCTAATCTTGGCGATA+AGG - chr8.4:19342574-19342593 MS.gene51052:CDS 30.0%
ATGTATGTGAAGTCATTGAA+TGG + chr8.4:19343206-19343225 None:intergenic 30.0%
ATGTTATTCTGTTGGAAGTA+TGG - chr8.4:19342959-19342978 MS.gene51052:intron 30.0%
ATTTAGTCGGTAGTTTATGA+TGG + chr8.4:19343920-19343939 None:intergenic 30.0%
CACATTATTTAAATCAAGGG+TGG - chr8.4:19343137-19343156 MS.gene51052:CDS 30.0%
TAAAAGATTAAGCCTCTGTT+TGG + chr8.4:19342886-19342905 None:intergenic 30.0%
TATTAGAACCCTGAATGAAA+TGG - chr8.4:19343428-19343447 MS.gene51052:intron 30.0%
TTAGCCAAATGTTATTCTGT+TGG - chr8.4:19342951-19342970 MS.gene51052:intron 30.0%
! CACTCTTCTAAAGATTCAAA+TGG + chr8.4:19342624-19342643 None:intergenic 30.0%
! GTAAAATTATCAGGCCTTTT+AGG - chr8.4:19343766-19343785 MS.gene51052:intron 30.0%
! TTTTCCTGAAACATTGCTAA+AGG - chr8.4:19344211-19344230 MS.gene51052:CDS 30.0%
!! AACCTTTGGAATCTTATCAT+CGG + chr8.4:19344336-19344355 None:intergenic 30.0%
!! AATTGGTAGTGAAAGTGAAT+AGG + chr8.4:19342740-19342759 None:intergenic 30.0%
!!! AGATTTTTTGTAACTATGGC+CGG - chr8.4:19344290-19344309 MS.gene51052:intron 30.0%
!!! GCAGAGATTTTTTGTAACTA+TGG - chr8.4:19344286-19344305 MS.gene51052:intron 30.0%
AACTTGGTTATCGATCTTGT+TGG + chr8.4:19343835-19343854 None:intergenic 35.0%
AAGAAATTCTACCTGGATTC+AGG - chr8.4:19343507-19343526 MS.gene51052:intron 35.0%
AATAGATTCACTGGGATTAC+TGG - chr8.4:19343697-19343716 MS.gene51052:intron 35.0%
ACAGAATGCTTGTTCCTAAA+AGG + chr8.4:19343783-19343802 None:intergenic 35.0%
ACAGTTCAAGAAATTCTACC+TGG - chr8.4:19343500-19343519 MS.gene51052:intron 35.0%
ACTGGATGCATTGGATTATT+AGG - chr8.4:19343715-19343734 MS.gene51052:intron 35.0%
CAGTACTTGAATAGATTCAC+TGG - chr8.4:19343688-19343707 MS.gene51052:intron 35.0%
CCAAGATTAGAATATACACC+AGG + chr8.4:19342569-19342588 None:intergenic 35.0%
CCTGGTGTATATTCTAATCT+TGG - chr8.4:19342566-19342585 MS.gene51052:CDS 35.0%
GACCCTGTTGTAAAATTATC+AGG - chr8.4:19343757-19343776 MS.gene51052:intron 35.0%
GATGATAAGATTCCAAAGGT+TGG - chr8.4:19344335-19344354 MS.gene51052:CDS 35.0%
GGATTATTAGGAAACCAAGA+TGG - chr8.4:19343727-19343746 MS.gene51052:intron 35.0%
GGGGTTTACTTCATGATAAA+TGG + chr8.4:19344105-19344124 None:intergenic 35.0%
TCACTTTCACTACCAATTCA+TGG - chr8.4:19342742-19342761 MS.gene51052:CDS 35.0%
TGGCATCTAAATTTGCACTT+AGG - chr8.4:19343288-19343307 MS.gene51052:intron 35.0%
TTCACTACCAATTCATGGAT+TGG - chr8.4:19342747-19342766 MS.gene51052:CDS 35.0%
TTTAGACTGCAAGAATGAGA+AGG - chr8.4:19342849-19342868 MS.gene51052:intron 35.0%
! AGGCCTGATAATTTTACAAC+AGG + chr8.4:19343763-19343782 None:intergenic 35.0%
! AGGTAATGCCATTTCATTCA+GGG + chr8.4:19343439-19343458 None:intergenic 35.0%
! CTCTCATTCAACAAGGATTT+TGG - chr8.4:19344264-19344283 MS.gene51052:intron 35.0%
! GGCCTGATAATTTTACAACA+GGG + chr8.4:19343762-19343781 None:intergenic 35.0%
! TTAGCTTATGTTTGGAACTG+CGG - chr8.4:19342809-19342828 MS.gene51052:CDS 35.0%
AATGCAGGCTTCTCATGTAA+AGG - chr8.4:19342770-19342789 MS.gene51052:CDS 40.0%
ACAAAGTAATGGTACCTTCC+CGG + chr8.4:19343561-19343580 None:intergenic 40.0%
ACAAGGTCAATGAAGCTTCA+AGG + chr8.4:19343888-19343907 None:intergenic 40.0%
ACATGGCTCTCATTTGTTTG+TGG + chr8.4:19343403-19343422 None:intergenic 40.0%
AGAAACAGTTTAGCCCTCAA+AGG - chr8.4:19343374-19343393 MS.gene51052:CDS 40.0%
ATGCTTCACTTGTGTTGCAA+TGG + chr8.4:19344141-19344160 None:intergenic 40.0%
CACCGATGATAAGATTCCAA+AGG - chr8.4:19344331-19344350 MS.gene51052:intron 40.0%
CTGCATTCCAATCCATGAAT+TGG + chr8.4:19342757-19342776 None:intergenic 40.0%
TTGAAAACAGTCCTGAATCC+AGG + chr8.4:19343521-19343540 None:intergenic 40.0%
TTGTTTGTGGAGACCTTTGA+GGG + chr8.4:19343390-19343409 None:intergenic 40.0%
TTTGTTTGTGGAGACCTTTG+AGG + chr8.4:19343391-19343410 None:intergenic 40.0%
! CAGGTAATGCCATTTCATTC+AGG + chr8.4:19343440-19343459 None:intergenic 40.0%
!! CAATTCATGGATTGGAATGC+AGG - chr8.4:19342755-19342774 MS.gene51052:CDS 40.0%
!! CTTTGGAATCTTATCATCGG+TGG + chr8.4:19344333-19344352 None:intergenic 40.0%
AAAGGCTCGCTTTGACAGTT+CGG - chr8.4:19344229-19344248 MS.gene51052:intron 45.0%
AAATGCATGCTGAGCACCAA+TGG + chr8.4:19344192-19344211 None:intergenic 45.0%
AAATGTACCGTACCAGACTC+CGG - chr8.4:19343539-19343558 MS.gene51052:intron 45.0%
AATCTTGGCGATAAGGCCAA+AGG - chr8.4:19342581-19342600 MS.gene51052:CDS 45.0%
ACTGGGATTACTGGATGCAT+TGG - chr8.4:19343706-19343725 MS.gene51052:intron 45.0%
AGCTTGTCACTCAAGGAAAC+TGG - chr8.4:19344161-19344180 MS.gene51052:CDS 45.0%
CGAGCCTTTAGCAATGTTTC+AGG + chr8.4:19344218-19344237 None:intergenic 45.0%
CGATCTTGTTGGTATGTGCA+AGG + chr8.4:19343824-19343843 None:intergenic 45.0%
GGTCAATGAAGCTTCAAGGA+AGG + chr8.4:19343884-19343903 None:intergenic 45.0%
GTAGGTGCTCTCATTCAACA+AGG - chr8.4:19344257-19344276 MS.gene51052:intron 45.0%
TGGTATGTGCAAGGCAACAT+TGG + chr8.4:19343815-19343834 None:intergenic 45.0%
TTTGACAGTTCGGGCAAAGT+AGG - chr8.4:19344239-19344258 MS.gene51052:intron 45.0%
! ATGTTTGGAACTGCGGTGAT+CGG - chr8.4:19342816-19342835 MS.gene51052:CDS 45.0%
! GAAGCATAGCTTGTCACTCA+AGG - chr8.4:19344154-19344173 MS.gene51052:CDS 45.0%
! TCGATAACCAAGTTGACTGC+TGG - chr8.4:19343841-19343860 MS.gene51052:intron 45.0%
!! AAGGAAACTGGTGTCACCAT+TGG - chr8.4:19344173-19344192 MS.gene51052:CDS 45.0%
AAGGCTCGCTTTGACAGTTC+GGG - chr8.4:19344230-19344249 MS.gene51052:intron 50.0%
AATGTACCGTACCAGACTCC+GGG - chr8.4:19343540-19343559 MS.gene51052:intron 50.0%
ACTACAGTCAGACATGCTGC+AGG + chr8.4:19343459-19343478 None:intergenic 50.0%
AGTAAACCCCCTAACCCAGA+CGG - chr8.4:19344115-19344134 MS.gene51052:intron 50.0%
CAAGAATGAGAAGGCTACCG+CGG - chr8.4:19342858-19342877 MS.gene51052:intron 50.0%
CAGGGTCATATGCTCCATCT+TGG + chr8.4:19343744-19343763 None:intergenic 50.0%
GGAACAAGCATTCTGTCCCT+AGG - chr8.4:19343787-19343806 MS.gene51052:intron 50.0%
TAAGCCTCTGTTTGGATCCG+CGG + chr8.4:19342878-19342897 None:intergenic 50.0%
TCCAAAGGTTGGAGTCTCCA+TGG - chr8.4:19344346-19344365 MS.gene51052:CDS 50.0%
TGTAACTATGGCCGGCGAAA+TGG - chr8.4:19344298-19344317 MS.gene51052:intron 50.0%
TTGTGTTGCAATGGCCGTCT+GGG + chr8.4:19344132-19344151 None:intergenic 50.0%
!! ACCAAGTTGACTGCTGGCTT+CGG - chr8.4:19343847-19343866 MS.gene51052:intron 50.0%
!! ATGGCCGGCGAAATGGATTT+TGG - chr8.4:19344305-19344324 MS.gene51052:intron 50.0%
!! CAAGGCAACATTGGCTCCTA+GGG + chr8.4:19343806-19343825 None:intergenic 50.0%
!! TGGCCGGCGAAATGGATTTT+GGG - chr8.4:19344306-19344325 MS.gene51052:intron 50.0%
AATGGTACCTTCCCGGAGTC+TGG + chr8.4:19343554-19343573 None:intergenic 55.0%
CTTGTGTTGCAATGGCCGTC+TGG + chr8.4:19344133-19344152 None:intergenic 55.0%
GCCATGGAGACTCCAACCTT+TGG + chr8.4:19344350-19344369 None:intergenic 55.0%
GGCCCCAAAATCCATTTCGC+CGG + chr8.4:19344312-19344331 None:intergenic 55.0%
TACCTTCCCGGAGTCTGGTA+CGG + chr8.4:19343549-19343568 None:intergenic 55.0%
TGCAATGGCCGTCTGGGTTA+GGG + chr8.4:19344126-19344145 None:intergenic 55.0%
TTGCAATGGCCGTCTGGGTT+AGG + chr8.4:19344127-19344146 None:intergenic 55.0%
!! GCAAGGCAACATTGGCTCCT+AGG + chr8.4:19343807-19343826 None:intergenic 55.0%
!! GGCCGGCGAAATGGATTTTG+GGG - chr8.4:19344307-19344326 MS.gene51052:intron 55.0%
GCCGAAGCCAGCAGTCAACT+TGG + chr8.4:19343851-19343870 None:intergenic 60.0%
GCTACCGCGGATCCAAACAG+AGG - chr8.4:19342871-19342890 MS.gene51052:intron 60.0%
TACCGTACCAGACTCCGGGA+AGG - chr8.4:19343544-19343563 MS.gene51052:intron 60.0%
! CAATGGCCGTCTGGGTTAGG+GGG + chr8.4:19344124-19344143 None:intergenic 60.0%
! GCAATGGCCGTCTGGGTTAG+GGG + chr8.4:19344125-19344144 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 19342554 19344382 19342554 ID=MS.gene51052
chr8.4 mRNA 19342554 19344382 19342554 ID=MS.gene51052.t1;Parent=MS.gene51052
chr8.4 exon 19344334 19344382 19344334 ID=MS.gene51052.t1.exon1;Parent=MS.gene51052.t1
chr8.4 CDS 19344334 19344382 19344334 ID=cds.MS.gene51052.t1;Parent=MS.gene51052.t1
chr8.4 exon 19344145 19344231 19344145 ID=MS.gene51052.t1.exon2;Parent=MS.gene51052.t1
chr8.4 CDS 19344145 19344231 19344145 ID=cds.MS.gene51052.t1;Parent=MS.gene51052.t1
chr8.4 exon 19343371 19343432 19343371 ID=MS.gene51052.t1.exon3;Parent=MS.gene51052.t1
chr8.4 CDS 19343371 19343432 19343371 ID=cds.MS.gene51052.t1;Parent=MS.gene51052.t1
chr8.4 exon 19343031 19343257 19343031 ID=MS.gene51052.t1.exon4;Parent=MS.gene51052.t1
chr8.4 CDS 19343031 19343257 19343031 ID=cds.MS.gene51052.t1;Parent=MS.gene51052.t1
chr8.4 exon 19342554 19342863 19342554 ID=MS.gene51052.t1.exon5;Parent=MS.gene51052.t1
chr8.4 CDS 19342554 19342863 19342554 ID=cds.MS.gene51052.t1;Parent=MS.gene51052.t1
Gene Sequence

>MS.gene51052

ATGAGCAAGAGTCCTGGTGTATATTCTAATCTTGGCGATAAGGCCAAAGGTTTTATCAAATTCCATTCCATTTGAATCTTTAGAAGAGTGTATTATCTATAAGCTTCCTTACTAGTATTATACTGAAATAAATTTGTTTATTTTTTATTAGATTGTCTTTACAAGGACTATGTTCAACAATCACCTATTCACTTTCACTACCAATTCATGGATTGGAATGCAGGCTTCTCATGTAAAGGTATTGTGAATATCAACTTAGCTTATGTTTGGAACTGCGGTGATCGGTGAAAACTGTTTTAGACTGCAAGAATGAGAAGGCTACCGCGGATCCAAACAGAGGCTTAATCTTTTACTTTTATTTTTCTACTTATGGTTGAAACTATGATTTTTTTTTTTTTTAGCCAAATGTTATTCTGTTGGAAGTATGGATAATAACAAATGAATGAGCAAACTGATATTTTGCTCATTGATTTCTTACTGAATGATTCAATGATTTAGTCCTCAAATTTTTCAAACTTTCTCCCATCATTCCATTTTCTATCTTTTGTAGTCTAGTTTGAATCATTTAAATATAAAATCATATCACATTATTTAAATCAAGGGTGGAATTGAACGTAAATTACAATGAAGATTACTCCATAACAAAATACCATTCAATGACTTCACATACATGCTGAGTTTTCAGAAACTATCAAAATTTTTTTCATCTTTTTTCAATCTTCATTTCATATGATTGGCATCTAAATTTGCACTTAGGAAACAAGTGAGTATCTCATAGAATCATAGTTTATGTATGCTATATCCGTTTAGAAATATGTATAGAAACAGTTTAGCCCTCAAAGGTCTCCACAAACAAATGAGAGCCATGTTAATTTATTAGAACCCTGAATGAAATGGCATTACCTGCAGCATGTCTGACTGTAGTGCTTTTGCTGCTGTATCCATTACAGTTCAAGAAATTCTACCTGGATTCAGGACTGTTTTCAAATGTACCGTACCAGACTCCGGGAAGGTACCATTACTTTGTACTTACCTATATACTATGTATAGTATCATCTTTAATAGTTTTAGTGTTTTTTTGTTCATTGCATCTGAGTATTTCCTCAAATCACAATGAATTCATAGGTGGAACTACAGTACTTGAATAGATTCACTGGGATTACTGGATGCATTGGATTATTAGGAAACCAAGATGGAGCATATGACCCTGTTGTAAAATTATCAGGCCTTTTAGGAACAAGCATTCTGTCCCTAGGAGCCAATGTTGCCTTGCACATACCAACAAGATCGATAACCAAGTTGACTGCTGGCTTCGGCTTAAACACTGCCTTCCTTGAAGCTTCATTGACCTTGTAAGATATATCCATCATAAACTACCGACTAAATTTATCAGAAAAATGGATAGGAATATCAATTAGTGATCTCTAAACTAACTTTAGCATTTAATTAATCATTACTGCTTAGTGTTCTGCTACTGTTTCTTTTGTCGAGCTTGAATTAAATATTTCATATTATGCAGGCATGACAGCTTTGACACTCTAAAAGCGACCATTTATCATGAAGTAAACCCCCTAACCCAGACGGCCATTGCAACACAAGTGAAGCATAGCTTGTCACTCAAGGAAACTGGTGTCACCATTGGTGCTCAGCATGCATTTTTTCCTGAAACATTGCTAAAGGCTCGCTTTGACAGTTCGGGCAAAGTAGGTGCTCTCATTCAACAAGGATTTTGGCAGAGATTTTTTGTAACTATGGCCGGCGAAATGGATTTTGGGGCCACCGATGATAAGATTCCAAAGGTTGGAGTCTCCATGGCTCTAAGACCCTAA
Protein sequence

>MS.gene51052.t1

MSKSPGVYSNLGDKAKDCLYKDYVQQSPIHFHYQFMDWNAGFSCKVQEILPGFRTVFKCTVPDSGKVELQYLNRFTGITGCIGLLGNQDGAYDPVVKLSGLLGTSILSLGANVALHIPTRSITKLTAGFGLNTAFLEASLTLHDSFDTLKATIYHEVNPLTQTAIATQVKHSLSLKETGVTIGAQHAFFPETLLKARFDSSGKVGALIQQGFWQRFFVTMAGEMDFGATDDKIPKVGVSMALRP