Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51055.t1 | XP_003609006.1 | 96.1 | 205 | 8 | 0 | 8 | 212 | 40 | 244 | 1.20E-105 | 392.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51055.t1 | Q9SRH5 | 42.0 | 205 | 110 | 3 | 10 | 212 | 79 | 276 | 1.2e-37 | 157.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51055.t1 | G7JPX4 | 96.1 | 205 | 8 | 0 | 8 | 212 | 40 | 244 | 8.9e-106 | 392.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054713 | MS.gene51055 | 0.865561 | 5.40E-65 | -1.69E-46 |
MS.gene055860 | MS.gene51055 | 0.806428 | 8.27E-50 | -1.69E-46 |
MS.gene058042 | MS.gene51055 | 0.973702 | 7.06E-137 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51055.t1 | MTR_4g107840 | 96.098 | 205 | 8 | 0 | 8 | 212 | 40 | 244 | 2.43e-144 | 402 |
MS.gene51055.t1 | MTR_8g469150 | 40.566 | 212 | 117 | 3 | 3 | 212 | 72 | 276 | 1.46e-46 | 155 |
MS.gene51055.t1 | MTR_7g009330 | 41.176 | 204 | 111 | 3 | 11 | 212 | 81 | 277 | 7.47e-46 | 153 |
MS.gene51055.t1 | MTR_8g469150 | 40.306 | 196 | 109 | 2 | 3 | 196 | 72 | 261 | 4.33e-43 | 146 |
MS.gene51055.t1 | MTR_6g011390 | 37.209 | 215 | 122 | 4 | 2 | 212 | 73 | 278 | 4.50e-42 | 143 |
MS.gene51055.t1 | MTR_5g015580 | 27.358 | 212 | 145 | 3 | 3 | 212 | 72 | 276 | 1.88e-25 | 100 |
MS.gene51055.t1 | MTR_1g018205 | 25.943 | 212 | 148 | 3 | 3 | 212 | 73 | 277 | 1.58e-21 | 89.7 |
MS.gene51055.t1 | MTR_4g128300 | 29.016 | 193 | 129 | 2 | 22 | 212 | 93 | 279 | 3.50e-21 | 89.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51055.t1 | AT3G01280 | 41.951 | 205 | 110 | 3 | 10 | 212 | 79 | 276 | 6.00e-49 | 161 |
MS.gene51055.t1 | AT5G15090 | 36.275 | 204 | 119 | 4 | 11 | 212 | 80 | 274 | 1.05e-38 | 135 |
MS.gene51055.t1 | AT5G15090 | 36.275 | 204 | 119 | 4 | 11 | 212 | 80 | 274 | 1.05e-38 | 135 |
MS.gene51055.t1 | AT5G57490 | 30.189 | 212 | 137 | 4 | 3 | 212 | 72 | 274 | 9.50e-29 | 108 |
MS.gene51055.t1 | AT5G67500 | 30.189 | 212 | 139 | 3 | 3 | 212 | 72 | 276 | 8.22e-28 | 106 |
MS.gene51055.t1 | AT5G67500 | 30.189 | 212 | 139 | 3 | 3 | 212 | 99 | 303 | 1.08e-27 | 107 |
MS.gene51055.t1 | AT5G67500 | 29.064 | 203 | 135 | 3 | 3 | 203 | 72 | 267 | 3.16e-23 | 95.1 |
MS.gene51055.t1 | AT3G49920 | 34.127 | 126 | 82 | 1 | 87 | 212 | 102 | 226 | 1.10e-15 | 73.2 |
Find 58 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGCCGGCGAAATGGATTT+TGG | 0.152016 | 8.4:+19270627 | MS.gene51055:CDS |
ACTGGATGCATTGGATTATT+AGG | 0.191506 | 8.4:+19270037 | MS.gene51055:CDS |
CTCTCATTCAACAAGGATTT+TGG | 0.192793 | 8.4:+19270586 | MS.gene51055:CDS |
CGAGCCTTTAGCAATGTTTC+AGG | 0.209136 | 8.4:-19270537 | None:intergenic |
TTGCAATGGCCGTCTGGGTT+AGG | 0.244222 | 8.4:-19270446 | None:intergenic |
AATAGATTCACTGGGATTAC+TGG | 0.244615 | 8.4:+19270019 | MS.gene51055:CDS |
CTTGTGTTGCAATGGCCGTC+TGG | 0.310688 | 8.4:-19270452 | None:intergenic |
TGCAATGGCCGTCTGGGTTA+GGG | 0.312768 | 8.4:-19270445 | None:intergenic |
AAGAAATTCTACCTGGATTC+AGG | 0.317980 | 8.4:+19269829 | MS.gene51055:CDS |
GACCCTGTTGTAAAATTATC+AGG | 0.320742 | 8.4:+19270079 | MS.gene51055:CDS |
ACAGAATGCTTGTTCCTAAA+AGG | 0.329840 | 8.4:-19270102 | None:intergenic |
GGGGTTTACTTCATGATAAA+TGG | 0.338544 | 8.4:-19270424 | None:intergenic |
TAGAATTTCTTGAACTGTAA+TGG | 0.369739 | 8.4:-19269817 | None:intergenic |
AAAGGCTCGCTTTGACAGTT+CGG | 0.382952 | 8.4:+19270551 | MS.gene51055:CDS |
TGTAACTATGGCCGGCGAAA+TGG | 0.408333 | 8.4:+19270620 | MS.gene51055:CDS |
AAGGCTCGCTTTGACAGTTC+GGG | 0.409065 | 8.4:+19270552 | MS.gene51055:CDS |
AATGGTACCTTCCCGGAGTC+TGG | 0.421783 | 8.4:-19269873 | None:intergenic |
ACCAAGTTGACTGCTGGCTT+CGG | 0.424833 | 8.4:+19270169 | MS.gene51055:CDS |
GCAAGGCAACATTGGCTCCT+AGG | 0.425523 | 8.4:-19270126 | None:intergenic |
ACAAAGTAATGGTACCTTCC+CGG | 0.441553 | 8.4:-19269880 | None:intergenic |
AGCTTGTCACTCAAGGAAAC+TGG | 0.442221 | 8.4:+19270483 | MS.gene51055:CDS |
ACTGGGATTACTGGATGCAT+TGG | 0.448328 | 8.4:+19270028 | MS.gene51055:CDS |
CAGGGTCATATGCTCCATCT+TGG | 0.460843 | 8.4:-19270063 | None:intergenic |
ACAAGGTCAATGAAGCTTCA+AGG | 0.465289 | 8.4:-19270207 | None:intergenic |
GCCATGGAGACTCCAACCTT+TGG | 0.474824 | 8.4:-19270669 | None:intergenic |
CAGTACTTGAATAGATTCAC+TGG | 0.475573 | 8.4:+19270010 | MS.gene51055:CDS |
AACTTGGTTATCGATCTTGT+TGG | 0.497298 | 8.4:-19270154 | None:intergenic |
TTTGACAGTTCGGGCAAAGT+AGG | 0.498953 | 8.4:+19270561 | MS.gene51055:CDS |
GCAATGGCCGTCTGGGTTAG+GGG | 0.501382 | 8.4:-19270444 | None:intergenic |
CAAGGCAACATTGGCTCCTA+GGG | 0.505987 | 8.4:-19270125 | None:intergenic |
GCCGAAGCCAGCAGTCAACT+TGG | 0.507792 | 8.4:-19270170 | None:intergenic |
TTGTGTTGCAATGGCCGTCT+GGG | 0.533482 | 8.4:-19270451 | None:intergenic |
GGAACAAGCATTCTGTCCCT+AGG | 0.535981 | 8.4:+19270109 | MS.gene51055:CDS |
AAGGAAACTGGTGTCACCAT+TGG | 0.538400 | 8.4:+19270495 | MS.gene51055:CDS |
AAATGTACCGTACCAGACTC+CGG | 0.544121 | 8.4:+19269861 | MS.gene51055:CDS |
CAATGGCCGTCTGGGTTAGG+GGG | 0.545151 | 8.4:-19270443 | None:intergenic |
TTGAAAACAGTCCTGAATCC+AGG | 0.545165 | 8.4:-19269840 | None:intergenic |
ACAGTTCAAGAAATTCTACC+TGG | 0.548340 | 8.4:+19269822 | MS.gene51055:CDS |
TCGATAACCAAGTTGACTGC+TGG | 0.549363 | 8.4:+19270163 | MS.gene51055:CDS |
GGCCCCAAAATCCATTTCGC+CGG | 0.561250 | 8.4:-19270631 | None:intergenic |
CGATCTTGTTGGTATGTGCA+AGG | 0.562305 | 8.4:-19270143 | None:intergenic |
AACCTTTGGAATCTTATCAT+CGG | 0.566666 | 8.4:-19270655 | None:intergenic |
AAATGCATGCTGAGCACCAA+TGG | 0.571123 | 8.4:-19270511 | None:intergenic |
GGATTATTAGGAAACCAAGA+TGG | 0.572580 | 8.4:+19270049 | MS.gene51055:CDS |
TCCAAAGGTTGGAGTCTCCA+TGG | 0.577690 | 8.4:+19270668 | MS.gene51055:CDS |
ATGCTTCACTTGTGTTGCAA+TGG | 0.577920 | 8.4:-19270460 | None:intergenic |
GATGATAAGATTCCAAAGGT+TGG | 0.579129 | 8.4:+19270657 | MS.gene51055:CDS |
AGATTAGGGTCTTAGAGCCA+TGG | 0.589733 | 8.4:-19270685 | None:intergenic |
AATGTACCGTACCAGACTCC+GGG | 0.592748 | 8.4:+19269862 | MS.gene51055:CDS |
CTTTGGAATCTTATCATCGG+TGG | 0.598433 | 8.4:-19270652 | None:intergenic |
GAAGCATAGCTTGTCACTCA+AGG | 0.598774 | 8.4:+19270476 | MS.gene51055:CDS |
TACCTTCCCGGAGTCTGGTA+CGG | 0.603084 | 8.4:-19269868 | None:intergenic |
GGTCAATGAAGCTTCAAGGA+AGG | 0.612698 | 8.4:-19270203 | None:intergenic |
AGTACTTGAATAGATTCACT+GGG | 0.614520 | 8.4:+19270011 | MS.gene51055:CDS |
TGGTATGTGCAAGGCAACAT+TGG | 0.624437 | 8.4:-19270134 | None:intergenic |
CACCGATGATAAGATTCCAA+AGG | 0.660499 | 8.4:+19270653 | MS.gene51055:CDS |
TACCGTACCAGACTCCGGGA+AGG | 0.677553 | 8.4:+19269866 | MS.gene51055:CDS |
GTAGGTGCTCTCATTCAACA+AGG | 0.711960 | 8.4:+19270579 | MS.gene51055:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAATATTTCATATTATGC+AGG | + | chr8.4:19270373-19270392 | MS.gene51055:intron | 15.0% |
!!! | ATTTTTCTGATAAATTTAGT+CGG | - | chr8.4:19270255-19270274 | None:intergenic | 15.0% |
!! | AATTTATCAGAAAAATGGAT+AGG | + | chr8.4:19270259-19270278 | MS.gene51055:intron | 20.0% |
!! | GACTAAATTTATCAGAAAAA+TGG | + | chr8.4:19270254-19270273 | MS.gene51055:intron | 20.0% |
!! | TGATACTATACATAGTATAT+AGG | - | chr8.4:19269911-19269930 | None:intergenic | 20.0% |
! | TAGAATTTCTTGAACTGTAA+TGG | - | chr8.4:19269820-19269839 | None:intergenic | 25.0% |
! | TATAGGTAAGTACAAAGTAA+TGG | - | chr8.4:19269894-19269913 | None:intergenic | 25.0% |
! | TATGAATTCATTGTGATTTG+AGG | - | chr8.4:19269980-19269999 | None:intergenic | 25.0% |
! | TCAAATCACAATGAATTCAT+AGG | + | chr8.4:19269979-19269998 | MS.gene51055:intron | 25.0% |
!!! | TATGATGGATATATCTTACA+AGG | - | chr8.4:19270227-19270246 | None:intergenic | 25.0% |
AATCACAATGAATTCATAGG+TGG | + | chr8.4:19269982-19270001 | MS.gene51055:intron | 30.0% | |
AGTACTTGAATAGATTCACT+GGG | + | chr8.4:19270011-19270030 | MS.gene51055:CDS | 30.0% | |
ATTTAGTCGGTAGTTTATGA+TGG | - | chr8.4:19270242-19270261 | None:intergenic | 30.0% | |
! | GTAAAATTATCAGGCCTTTT+AGG | + | chr8.4:19270088-19270107 | MS.gene51055:CDS | 30.0% |
! | TTTTCCTGAAACATTGCTAA+AGG | + | chr8.4:19270533-19270552 | MS.gene51055:CDS | 30.0% |
!! | AACCTTTGGAATCTTATCAT+CGG | - | chr8.4:19270658-19270677 | None:intergenic | 30.0% |
!!! | AGATTTTTTGTAACTATGGC+CGG | + | chr8.4:19270612-19270631 | MS.gene51055:CDS | 30.0% |
!!! | GCAGAGATTTTTTGTAACTA+TGG | + | chr8.4:19270608-19270627 | MS.gene51055:CDS | 30.0% |
AACTTGGTTATCGATCTTGT+TGG | - | chr8.4:19270157-19270176 | None:intergenic | 35.0% | |
AAGAAATTCTACCTGGATTC+AGG | + | chr8.4:19269829-19269848 | MS.gene51055:CDS | 35.0% | |
AATAGATTCACTGGGATTAC+TGG | + | chr8.4:19270019-19270038 | MS.gene51055:CDS | 35.0% | |
ACAGAATGCTTGTTCCTAAA+AGG | - | chr8.4:19270105-19270124 | None:intergenic | 35.0% | |
ACAGTTCAAGAAATTCTACC+TGG | + | chr8.4:19269822-19269841 | MS.gene51055:CDS | 35.0% | |
ACTGGATGCATTGGATTATT+AGG | + | chr8.4:19270037-19270056 | MS.gene51055:CDS | 35.0% | |
CAGTACTTGAATAGATTCAC+TGG | + | chr8.4:19270010-19270029 | MS.gene51055:CDS | 35.0% | |
GACCCTGTTGTAAAATTATC+AGG | + | chr8.4:19270079-19270098 | MS.gene51055:CDS | 35.0% | |
GATGATAAGATTCCAAAGGT+TGG | + | chr8.4:19270657-19270676 | MS.gene51055:CDS | 35.0% | |
GGATTATTAGGAAACCAAGA+TGG | + | chr8.4:19270049-19270068 | MS.gene51055:CDS | 35.0% | |
GGGGTTTACTTCATGATAAA+TGG | - | chr8.4:19270427-19270446 | None:intergenic | 35.0% | |
! | AGGCCTGATAATTTTACAAC+AGG | - | chr8.4:19270085-19270104 | None:intergenic | 35.0% |
! | CTCTCATTCAACAAGGATTT+TGG | + | chr8.4:19270586-19270605 | MS.gene51055:CDS | 35.0% |
! | GGCCTGATAATTTTACAACA+GGG | - | chr8.4:19270084-19270103 | None:intergenic | 35.0% |
ACAAAGTAATGGTACCTTCC+CGG | - | chr8.4:19269883-19269902 | None:intergenic | 40.0% | |
ACAAGGTCAATGAAGCTTCA+AGG | - | chr8.4:19270210-19270229 | None:intergenic | 40.0% | |
ATGCTTCACTTGTGTTGCAA+TGG | - | chr8.4:19270463-19270482 | None:intergenic | 40.0% | |
CACCGATGATAAGATTCCAA+AGG | + | chr8.4:19270653-19270672 | MS.gene51055:CDS | 40.0% | |
TTGAAAACAGTCCTGAATCC+AGG | - | chr8.4:19269843-19269862 | None:intergenic | 40.0% | |
!! | CTTTGGAATCTTATCATCGG+TGG | - | chr8.4:19270655-19270674 | None:intergenic | 40.0% |
AAAGGCTCGCTTTGACAGTT+CGG | + | chr8.4:19270551-19270570 | MS.gene51055:CDS | 45.0% | |
AAATGCATGCTGAGCACCAA+TGG | - | chr8.4:19270514-19270533 | None:intergenic | 45.0% | |
AAATGTACCGTACCAGACTC+CGG | + | chr8.4:19269861-19269880 | MS.gene51055:CDS | 45.0% | |
ACTGGGATTACTGGATGCAT+TGG | + | chr8.4:19270028-19270047 | MS.gene51055:CDS | 45.0% | |
AGCTTGTCACTCAAGGAAAC+TGG | + | chr8.4:19270483-19270502 | MS.gene51055:CDS | 45.0% | |
CGAGCCTTTAGCAATGTTTC+AGG | - | chr8.4:19270540-19270559 | None:intergenic | 45.0% | |
CGATCTTGTTGGTATGTGCA+AGG | - | chr8.4:19270146-19270165 | None:intergenic | 45.0% | |
GGTCAATGAAGCTTCAAGGA+AGG | - | chr8.4:19270206-19270225 | None:intergenic | 45.0% | |
GTAGGTGCTCTCATTCAACA+AGG | + | chr8.4:19270579-19270598 | MS.gene51055:CDS | 45.0% | |
TGGTATGTGCAAGGCAACAT+TGG | - | chr8.4:19270137-19270156 | None:intergenic | 45.0% | |
TTTGACAGTTCGGGCAAAGT+AGG | + | chr8.4:19270561-19270580 | MS.gene51055:CDS | 45.0% | |
! | GAAGCATAGCTTGTCACTCA+AGG | + | chr8.4:19270476-19270495 | MS.gene51055:CDS | 45.0% |
! | TCGATAACCAAGTTGACTGC+TGG | + | chr8.4:19270163-19270182 | MS.gene51055:CDS | 45.0% |
!! | AAGGAAACTGGTGTCACCAT+TGG | + | chr8.4:19270495-19270514 | MS.gene51055:CDS | 45.0% |
AAGGCTCGCTTTGACAGTTC+GGG | + | chr8.4:19270552-19270571 | MS.gene51055:CDS | 50.0% | |
AATGTACCGTACCAGACTCC+GGG | + | chr8.4:19269862-19269881 | MS.gene51055:CDS | 50.0% | |
AGTAAACCCCCTAACCCAGA+CGG | + | chr8.4:19270437-19270456 | MS.gene51055:CDS | 50.0% | |
CAGGGTCATATGCTCCATCT+TGG | - | chr8.4:19270066-19270085 | None:intergenic | 50.0% | |
GGAACAAGCATTCTGTCCCT+AGG | + | chr8.4:19270109-19270128 | MS.gene51055:CDS | 50.0% | |
TCCAAAGGTTGGAGTCTCCA+TGG | + | chr8.4:19270668-19270687 | MS.gene51055:CDS | 50.0% | |
TGTAACTATGGCCGGCGAAA+TGG | + | chr8.4:19270620-19270639 | MS.gene51055:CDS | 50.0% | |
TTGTGTTGCAATGGCCGTCT+GGG | - | chr8.4:19270454-19270473 | None:intergenic | 50.0% | |
!! | ACCAAGTTGACTGCTGGCTT+CGG | + | chr8.4:19270169-19270188 | MS.gene51055:CDS | 50.0% |
!! | ATGGCCGGCGAAATGGATTT+TGG | + | chr8.4:19270627-19270646 | MS.gene51055:CDS | 50.0% |
!! | CAAGGCAACATTGGCTCCTA+GGG | - | chr8.4:19270128-19270147 | None:intergenic | 50.0% |
!! | TGGCCGGCGAAATGGATTTT+GGG | + | chr8.4:19270628-19270647 | MS.gene51055:CDS | 50.0% |
AATGGTACCTTCCCGGAGTC+TGG | - | chr8.4:19269876-19269895 | None:intergenic | 55.0% | |
CTTGTGTTGCAATGGCCGTC+TGG | - | chr8.4:19270455-19270474 | None:intergenic | 55.0% | |
GCCATGGAGACTCCAACCTT+TGG | - | chr8.4:19270672-19270691 | None:intergenic | 55.0% | |
GGCCCCAAAATCCATTTCGC+CGG | - | chr8.4:19270634-19270653 | None:intergenic | 55.0% | |
TACCTTCCCGGAGTCTGGTA+CGG | - | chr8.4:19269871-19269890 | None:intergenic | 55.0% | |
TGCAATGGCCGTCTGGGTTA+GGG | - | chr8.4:19270448-19270467 | None:intergenic | 55.0% | |
TTGCAATGGCCGTCTGGGTT+AGG | - | chr8.4:19270449-19270468 | None:intergenic | 55.0% | |
!! | GCAAGGCAACATTGGCTCCT+AGG | - | chr8.4:19270129-19270148 | None:intergenic | 55.0% |
!! | GGCCGGCGAAATGGATTTTG+GGG | + | chr8.4:19270629-19270648 | MS.gene51055:CDS | 55.0% |
GCCGAAGCCAGCAGTCAACT+TGG | - | chr8.4:19270173-19270192 | None:intergenic | 60.0% | |
TACCGTACCAGACTCCGGGA+AGG | + | chr8.4:19269866-19269885 | MS.gene51055:CDS | 60.0% | |
! | CAATGGCCGTCTGGGTTAGG+GGG | - | chr8.4:19270446-19270465 | None:intergenic | 60.0% |
! | GCAATGGCCGTCTGGGTTAG+GGG | - | chr8.4:19270447-19270466 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 19269786 | 19270704 | 19269786 | ID=MS.gene51055 |
chr8.4 | mRNA | 19269786 | 19270704 | 19269786 | ID=MS.gene51055.t1;Parent=MS.gene51055 |
chr8.4 | exon | 19269786 | 19269887 | 19269786 | ID=MS.gene51055.t1.exon1;Parent=MS.gene51055.t1 |
chr8.4 | CDS | 19269786 | 19269887 | 19269786 | ID=cds.MS.gene51055.t1;Parent=MS.gene51055.t1 |
chr8.4 | exon | 19270001 | 19270227 | 19270001 | ID=MS.gene51055.t1.exon2;Parent=MS.gene51055.t1 |
chr8.4 | CDS | 19270001 | 19270227 | 19270001 | ID=cds.MS.gene51055.t1;Parent=MS.gene51055.t1 |
chr8.4 | exon | 19270395 | 19270704 | 19270395 | ID=MS.gene51055.t1.exon3;Parent=MS.gene51055.t1 |
chr8.4 | CDS | 19270395 | 19270704 | 19270395 | ID=cds.MS.gene51055.t1;Parent=MS.gene51055.t1 |
Gene Sequence |
Protein sequence |