Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51446.t1 | XP_013468649.1 | 97.6 | 861 | 20 | 1 | 1 | 861 | 1 | 860 | 0.00E+00 | 1731.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51446.t1 | O53732 | 42.8 | 285 | 153 | 3 | 571 | 848 | 144 | 425 | 8.2e-56 | 220.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51446.t1 | A0A072VM29 | 97.6 | 861 | 20 | 1 | 1 | 861 | 1 | 860 | 0.0e+00 | 1731.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051471 | MS.gene51446 | 0.809835 | 1.55E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene51446 | 0.802447 | 5.59E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene51446 | 0.807481 | 4.95E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene51446 | 0.808476 | 3.04E-50 | -1.69E-46 |
| MS.gene056314 | MS.gene51446 | 0.818791 | 1.63E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene51446 | 0.814628 | 1.40E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene51446 | 0.808722 | 2.69E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene51446 | 0.808647 | 2.79E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene51446 | 0.818264 | 2.15E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51446.t1 | MTR_1g073700 | 97.561 | 861 | 20 | 1 | 1 | 861 | 1 | 860 | 0.0 | 1753 |
| MS.gene51446.t1 | MTR_1g044520 | 68.409 | 861 | 223 | 5 | 1 | 855 | 1 | 818 | 0.0 | 1214 |
| MS.gene51446.t1 | MTR_3g104740 | 28.270 | 237 | 157 | 6 | 577 | 808 | 81 | 309 | 1.27e-21 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51446.t1 | AT3G23510 | 74.276 | 863 | 218 | 3 | 1 | 861 | 1 | 861 | 0.0 | 1369 |
| MS.gene51446.t1 | AT3G23530 | 74.508 | 863 | 216 | 3 | 1 | 861 | 1 | 861 | 0.0 | 1368 |
| MS.gene51446.t1 | AT3G23470 | 67.544 | 456 | 145 | 2 | 407 | 859 | 25 | 480 | 0.0 | 662 |
| MS.gene51446.t1 | AT3G23470 | 67.544 | 456 | 145 | 2 | 407 | 859 | 25 | 480 | 0.0 | 662 |
| MS.gene51446.t1 | AT3G23470 | 67.550 | 453 | 144 | 2 | 410 | 859 | 1 | 453 | 0.0 | 659 |
| MS.gene51446.t1 | AT3G23480 | 66.140 | 443 | 147 | 3 | 410 | 851 | 1 | 441 | 0.0 | 618 |
| MS.gene51446.t1 | AT3G23480 | 61.233 | 454 | 148 | 6 | 410 | 859 | 1 | 430 | 0.0 | 558 |
| MS.gene51446.t1 | AT3G23480 | 61.501 | 413 | 132 | 5 | 451 | 859 | 4 | 393 | 1.66e-175 | 514 |
| MS.gene51446.t1 | AT3G23460 | 54.275 | 269 | 103 | 6 | 421 | 687 | 2 | 252 | 2.05e-83 | 270 |
| MS.gene51446.t1 | AT3G23460 | 71.053 | 76 | 22 | 0 | 780 | 855 | 209 | 284 | 8.03e-33 | 129 |
| MS.gene51446.t1 | AT4G33110 | 29.804 | 255 | 169 | 7 | 559 | 811 | 60 | 306 | 3.93e-25 | 108 |
| MS.gene51446.t1 | AT4G33110 | 29.804 | 255 | 169 | 7 | 559 | 811 | 60 | 306 | 3.93e-25 | 108 |
| MS.gene51446.t1 | AT4G33120 | 26.374 | 273 | 189 | 7 | 559 | 825 | 60 | 326 | 1.85e-22 | 100 |
Find 179 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTACCTGCTCTTCAATTT+TGG | 0.081221 | 1.3:+53124763 | None:intergenic |
| CCTGATGCTTTGAGATTATT+AGG | 0.163231 | 1.3:-53126753 | MS.gene51446:CDS |
| TACATACCTTCCAATAAAAT+TGG | 0.167387 | 1.3:+53125359 | None:intergenic |
| TTGTGTTCTCAGTGAAATTT+TGG | 0.197558 | 1.3:-53122885 | MS.gene51446:intron |
| GTTGAGGTGTTACAGCTTAT+TGG | 0.231147 | 1.3:-53125461 | MS.gene51446:intron |
| CTATCATATTTGTATGTCTT+TGG | 0.234916 | 1.3:+53123752 | None:intergenic |
| TGATGGACTTCTTGTTCTTC+AGG | 0.266991 | 1.3:-53123555 | MS.gene51446:intron |
| TTCCTATTTGTGGTTCTATT+TGG | 0.270846 | 1.3:-53127585 | MS.gene51446:CDS |
| CTCAAAGAATTCCATCATAT+TGG | 0.270898 | 1.3:+53128596 | None:intergenic |
| TGATTTGGACCTTGGTTTCA+TGG | 0.272691 | 1.3:-53131226 | MS.gene51446:CDS |
| AAAGAAGAGCTTCAGAATAA+TGG | 0.273819 | 1.3:-53126996 | MS.gene51446:CDS |
| TATGATGAGAGAAGAATTAT+TGG | 0.288707 | 1.3:-53126717 | MS.gene51446:CDS |
| GACATCTGCAAAGTTCTTCA+TGG | 0.299126 | 1.3:-53124628 | MS.gene51446:CDS |
| ATGCATTGAATCCTTACTTT+TGG | 0.299833 | 1.3:-53128455 | MS.gene51446:CDS |
| ATTTCATGAAGATGGATTAA+AGG | 0.305706 | 1.3:-53126015 | MS.gene51446:intron |
| ACTGCAGCTCATGGAATTCT+TGG | 0.312206 | 1.3:-53125839 | MS.gene51446:CDS |
| GAATACATGGAAGAATTCTT+TGG | 0.321598 | 1.3:-53123602 | MS.gene51446:CDS |
| TTGGTTTCATGGTCTTCAAT+AGG | 0.325877 | 1.3:-53131215 | MS.gene51446:CDS |
| GTGGTTGGTGGTGGGATTAG+TGG | 0.327974 | 1.3:-53131354 | MS.gene51446:CDS |
| TGATCCTCTCTGCAGCTCTT+TGG | 0.331575 | 1.3:-53127402 | MS.gene51446:intron |
| TTTGGTTTCAGCTTATGTTT+TGG | 0.333472 | 1.3:-53131331 | MS.gene51446:CDS |
| AAACATGAAATTCTTGAGAT+TGG | 0.333905 | 1.3:-53124104 | MS.gene51446:CDS |
| ATGTTTACCTTTGAGGGAAC+TGG | 0.340227 | 1.3:-53125424 | MS.gene51446:CDS |
| TTTGCAGGATGTGTCGTTTA+CGG | 0.342934 | 1.3:-53126828 | MS.gene51446:intron |
| TGGTTTCATGGTCTTCAATA+GGG | 0.343252 | 1.3:-53131214 | MS.gene51446:intron |
| CTAAGCACATGGTACCTTCT+TGG | 0.345342 | 1.3:-53125790 | MS.gene51446:CDS |
| TTGGTTTCATCGTCTGAAAA+AGG | 0.347734 | 1.3:-53126942 | MS.gene51446:intron |
| ATTGAAGTTGTTAAAAGAAC+TGG | 0.353382 | 1.3:-53124059 | MS.gene51446:CDS |
| TAATGCTGATGGTGTTGATT+TGG | 0.360937 | 1.3:-53131241 | MS.gene51446:CDS |
| CAAGAAGGTACCATGTGCTT+AGG | 0.366493 | 1.3:+53125791 | None:intergenic |
| TGGTGGTGGGATTAGTGGTT+TGG | 0.366618 | 1.3:-53131349 | MS.gene51446:CDS |
| ACAAAGTTTGTGTGACATAC+TGG | 0.371309 | 1.3:-53126508 | MS.gene51446:CDS |
| TGAACTCTCAAAACACTCTT+GGG | 0.376065 | 1.3:+53125388 | None:intergenic |
| ACATACCTTCCAATAAAATT+GGG | 0.378336 | 1.3:+53125360 | None:intergenic |
| AGTTAAAGATGCTGGCCTTC+GGG | 0.382566 | 1.3:-53123979 | MS.gene51446:intron |
| AAGAAGAGCTTCAGAATAAT+GGG | 0.387322 | 1.3:-53126995 | MS.gene51446:CDS |
| CTAATCATTTGCCAAAAGTA+AGG | 0.389886 | 1.3:+53128444 | None:intergenic |
| TCAAAGAATTCCATCATATT+GGG | 0.391112 | 1.3:+53128597 | None:intergenic |
| CTAGCAGATGCATACATTAA+TGG | 0.392160 | 1.3:-53124959 | MS.gene51446:CDS |
| TGAGAGTCTTGGAGTTGAAA+TGG | 0.395229 | 1.3:-53128577 | MS.gene51446:CDS |
| TGTATGTCTTTGGTAATTGC+CGG | 0.395473 | 1.3:+53123762 | None:intergenic |
| TAAAGAACCAGTGGTAATAA+AGG | 0.395909 | 1.3:+53125724 | None:intergenic |
| TATGGATCACAATGAGTCTC+TGG | 0.400490 | 1.3:-53127764 | MS.gene51446:CDS |
| ATGGAATTCTTTGAGAGTCT+TGG | 0.402654 | 1.3:-53128588 | MS.gene51446:CDS |
| GGTTATGGATTTCATGAAGA+TGG | 0.403889 | 1.3:-53126023 | MS.gene51446:CDS |
| TGGCATCCGCATCCAGACTA+TGG | 0.404974 | 1.3:-53123230 | MS.gene51446:intron |
| TGCTGCCCCATTCGCAGCCT+CGG | 0.409671 | 1.3:+53128514 | None:intergenic |
| CTGAGTTCCTTTATTACCAC+TGG | 0.409745 | 1.3:-53125731 | MS.gene51446:CDS |
| GGCAGCAGAAACGGTTTGTC+CGG | 0.410335 | 1.3:-53128498 | MS.gene51446:CDS |
| AGTTCAAAGATGATGCTATA+AGG | 0.411304 | 1.3:-53128410 | MS.gene51446:intron |
| TACTCATCATAACGCTCATC+CGG | 0.413131 | 1.3:+53123333 | None:intergenic |
| GTGAACTCTCAAAACACTCT+TGG | 0.413336 | 1.3:+53125387 | None:intergenic |
| CAGAAAATACATTGCTTAAG+TGG | 0.413575 | 1.3:-53126321 | MS.gene51446:CDS |
| ATACTCTCACACAGGCTAGA+AGG | 0.417607 | 1.3:-53124587 | MS.gene51446:CDS |
| ACCCATCAGCATGGAGTGCT+TGG | 0.418029 | 1.3:-53126553 | MS.gene51446:CDS |
| TGTATGTAGATTCCTATTTG+TGG | 0.420321 | 1.3:-53127595 | MS.gene51446:intron |
| GCTTGAGAATAACCTAGATA+TGG | 0.421078 | 1.3:-53127782 | MS.gene51446:CDS |
| GAGTTAAAGATGCTGGCCTT+CGG | 0.424650 | 1.3:-53123980 | MS.gene51446:CDS |
| GATGGTGTTGATTTGGACCT+TGG | 0.425424 | 1.3:-53131234 | MS.gene51446:CDS |
| CCTAATAATCTCAAAGCATC+AGG | 0.429258 | 1.3:+53126753 | None:intergenic |
| TATTAGATTGTACCATAGTC+TGG | 0.429735 | 1.3:+53123218 | None:intergenic |
| CCGCAATCACCACCTACTTC+AGG | 0.430513 | 1.3:-53127506 | MS.gene51446:intron |
| AGAGTTGCAGTGGTTGGTGG+TGG | 0.430696 | 1.3:-53131363 | MS.gene51446:CDS |
| GGAACAATGTTTACCTTTGA+GGG | 0.431478 | 1.3:-53125430 | MS.gene51446:CDS |
| GACCAAATAGAACCACAAAT+AGG | 0.432546 | 1.3:+53127583 | None:intergenic |
| ACGCACACTTGGGAATTATC+AGG | 0.436845 | 1.3:-53122789 | MS.gene51446:intron |
| CGCAGCCTCGGCCTTTGTCT+AGG | 0.436904 | 1.3:+53128526 | None:intergenic |
| ACTCATTGTGATCCATATCT+AGG | 0.437102 | 1.3:+53127770 | None:intergenic |
| CATGTGTCTTTAGGGGTTGG+TGG | 0.437757 | 1.3:-53124677 | MS.gene51446:intron |
| CAAAGACATACAAATATGAT+AGG | 0.440729 | 1.3:-53123751 | MS.gene51446:CDS |
| ATACTCATGTGCAGTGTTCA+AGG | 0.452458 | 1.3:-53124401 | MS.gene51446:intron |
| ACATTGCTTAAGTGGTCAAC+TGG | 0.455428 | 1.3:-53126313 | MS.gene51446:CDS |
| CAAAGGCCGAGGCTGCGAAT+GGG | 0.456518 | 1.3:-53128520 | MS.gene51446:CDS |
| TGCGAATGGGGCAGCAGAAA+CGG | 0.458081 | 1.3:-53128507 | MS.gene51446:CDS |
| TCATTTGTTGATAAAGATGA+AGG | 0.459873 | 1.3:-53124929 | MS.gene51446:CDS |
| AAGAAGGTACCATGTGCTTA+GGG | 0.463566 | 1.3:+53125792 | None:intergenic |
| GTACCTTCTTGGAAAGAACT+TGG | 0.464070 | 1.3:-53125779 | MS.gene51446:CDS |
| AGGAACAATGTTTACCTTTG+AGG | 0.465754 | 1.3:-53125431 | MS.gene51446:CDS |
| GTATGAGAAAGAAGATTACT+TGG | 0.468571 | 1.3:-53131283 | MS.gene51446:CDS |
| GGATGAATTTAAATCTCTGT+TGG | 0.470475 | 1.3:+53124789 | None:intergenic |
| TCTTCATGGACCATGTTTCA+AGG | 0.471530 | 1.3:-53124614 | MS.gene51446:CDS |
| AAACCAGCCGTAAATAAAAT+CGG | 0.474194 | 1.3:+53124651 | None:intergenic |
| GTCATGACACAGGCAGATTT+AGG | 0.481912 | 1.3:-53124983 | MS.gene51446:CDS |
| GTAGAGCTAGACCGTATTCA+AGG | 0.482234 | 1.3:-53126253 | MS.gene51446:CDS |
| ACAAAGGCCGAGGCTGCGAA+TGG | 0.486114 | 1.3:-53128521 | MS.gene51446:CDS |
| ATTTGGTCATGCTCTTCTGA+AGG | 0.488152 | 1.3:-53127568 | MS.gene51446:CDS |
| TACCTTCTTGGAAAGAACTT+GGG | 0.489891 | 1.3:-53125778 | MS.gene51446:CDS |
| AATTTCTTCTATGCGACTAC+CGG | 0.492378 | 1.3:-53123781 | MS.gene51446:CDS |
| CTTGAGATTGGATGTGGATG+GGG | 0.492917 | 1.3:-53124092 | MS.gene51446:CDS |
| GAAATTCTTGAGATTGGATG+TGG | 0.499152 | 1.3:-53124098 | MS.gene51446:CDS |
| ATACTGGCTAAACATTCTTC+AGG | 0.499565 | 1.3:-53126492 | MS.gene51446:intron |
| GCTGGCATGACTGCAGCTCA+TGG | 0.503236 | 1.3:-53125848 | MS.gene51446:CDS |
| CTGAATGCAGTAACGTTCCC+AGG | 0.504504 | 1.3:+53122661 | None:intergenic |
| TGTGTCGTTTACGGCAAAGA+TGG | 0.505224 | 1.3:-53126819 | MS.gene51446:CDS |
| TGTGCTTAGGGTTGGTCTGA+AGG | 0.508207 | 1.3:+53125804 | None:intergenic |
| CTCCTCTGACAAAGTGATAC+CGG | 0.508711 | 1.3:+53124025 | None:intergenic |
| TTCCAAGCACTCCATGCTGA+TGG | 0.510970 | 1.3:+53126551 | None:intergenic |
| ATCACAAAATTATGTTAAGA+AGG | 0.511044 | 1.3:-53127349 | MS.gene51446:intron |
| TTGCAGAATATTGAAGAAGC+AGG | 0.511654 | 1.3:-53126382 | MS.gene51446:intron |
| CATTTCTAGACATTATGATC+TGG | 0.515475 | 1.3:-53124562 | MS.gene51446:intron |
| GCTTTGTATGCGGCAACTGA+TGG | 0.517716 | 1.3:+53126280 | None:intergenic |
| CCAACCCAAAATTGAAGAGC+AGG | 0.517767 | 1.3:-53124768 | MS.gene51446:intron |
| GAGAAATATGAGAGTTGCAG+TGG | 0.517895 | 1.3:-53131373 | None:intergenic |
| GCCCCAAGTTCTTTCCAAGA+AGG | 0.523486 | 1.3:+53125776 | None:intergenic |
| TCTTGAGATTGGATGTGGAT+GGG | 0.525582 | 1.3:-53124093 | MS.gene51446:CDS |
| TCAGTGATCCATACAAAAGC+TGG | 0.525706 | 1.3:-53122642 | MS.gene51446:CDS |
| GTGCTTAGGGTTGGTCTGAA+GGG | 0.530057 | 1.3:+53125805 | None:intergenic |
| CTTTGTATGCGGCAACTGAT+GGG | 0.531762 | 1.3:+53126281 | None:intergenic |
| TTTGTCCTAGTACCTGAAGT+AGG | 0.534342 | 1.3:+53127494 | None:intergenic |
| GGTGACCTATCCCAATATGA+TGG | 0.534373 | 1.3:-53128607 | MS.gene51446:CDS |
| AATATGATAGGATTATATCT+TGG | 0.535641 | 1.3:-53123739 | MS.gene51446:intron |
| TGTTTACCTTTGAGGGAACT+GGG | 0.536160 | 1.3:-53125423 | MS.gene51446:CDS |
| ATGAGCGTTATGATGAGTAT+AGG | 0.536472 | 1.3:-53123329 | MS.gene51446:CDS |
| ATGGATCACAATGAGTCTCT+GGG | 0.539159 | 1.3:-53127763 | MS.gene51446:CDS |
| AAAGGCCGAGGCTGCGAATG+GGG | 0.540676 | 1.3:-53128519 | MS.gene51446:CDS |
| TGGGGCAATTCCTCAAGTCA+AGG | 0.540736 | 1.3:-53127744 | MS.gene51446:CDS |
| CTGAGTAACCCCTTGACTTG+AGG | 0.544473 | 1.3:+53127734 | None:intergenic |
| ATGAGAGTTGCAGTGGTTGG+TGG | 0.545211 | 1.3:-53131366 | MS.gene51446:CDS |
| TCCAAGCACTCCATGCTGAT+GGG | 0.549415 | 1.3:+53126552 | None:intergenic |
| GAATTCCATCATATTGGGAT+AGG | 0.549525 | 1.3:+53128602 | None:intergenic |
| GGGGCAATTCCTCAAGTCAA+GGG | 0.550622 | 1.3:-53127743 | MS.gene51446:CDS |
| TATGCGGCAACTGATGGGAC+CGG | 0.554214 | 1.3:+53126286 | None:intergenic |
| AGTGAAATGATAGAAGCTGT+TGG | 0.554426 | 1.3:-53123629 | MS.gene51446:CDS |
| GTTGCCTACCCTCTCTAAGT+AGG | 0.559456 | 1.3:-53123266 | MS.gene51446:CDS |
| TTCTTGAGATTGGATGTGGA+TGG | 0.561971 | 1.3:-53124094 | MS.gene51446:CDS |
| GAGTTGCAGTGGTTGGTGGT+GGG | 0.565837 | 1.3:-53131362 | MS.gene51446:CDS |
| CAGTGGTAATAAAGGAACTC+AGG | 0.570251 | 1.3:+53125732 | None:intergenic |
| CATCTGACAGTTAGCCATTG+TGG | 0.573217 | 1.3:+53127375 | None:intergenic |
| TCTATAGTTCATATCAATCC+CGG | 0.573341 | 1.3:-53123352 | MS.gene51446:intron |
| ACCTTCTTGGAAAGAACTTG+GGG | 0.575673 | 1.3:-53125777 | MS.gene51446:CDS |
| ATGCGGCAACTGATGGGACC+GGG | 0.576146 | 1.3:+53126287 | None:intergenic |
| TGTTACAGCTTATTGGAGGA+AGG | 0.576939 | 1.3:-53125454 | MS.gene51446:intron |
| GAATCAGTAATGGCAAATGA+TGG | 0.578032 | 1.3:-53123572 | MS.gene51446:CDS |
| ACTATCAAACACTAAGATTG+TGG | 0.580836 | 1.3:-53123022 | MS.gene51446:CDS |
| TAGTCTGGATGCGGATGCCA+TGG | 0.583295 | 1.3:+53123233 | None:intergenic |
| GGTTCTGAAGAAGTGTATGA+TGG | 0.583424 | 1.3:-53126798 | MS.gene51446:CDS |
| TGGTTGTTGTGAATCAGTAA+TGG | 0.588714 | 1.3:-53123582 | MS.gene51446:CDS |
| CATTAATGTATGCATCTGCT+AGG | 0.590392 | 1.3:+53124960 | None:intergenic |
| AGAGAGGGTAGGCAACCTCC+TGG | 0.591232 | 1.3:+53123273 | None:intergenic |
| AAGTAGGATCACATCATCCA+TGG | 0.591586 | 1.3:-53123250 | MS.gene51446:CDS |
| GAGGTGTTACAGCTTATTGG+AGG | 0.595217 | 1.3:-53125458 | MS.gene51446:intron |
| AGGTACCATGTGCTTAGGGT+TGG | 0.595434 | 1.3:+53125796 | None:intergenic |
| TGATGTGATCCTACTTAGAG+AGG | 0.597804 | 1.3:+53123257 | None:intergenic |
| AGCTGTTGGACATGAATACA+TGG | 0.598486 | 1.3:-53123615 | MS.gene51446:CDS |
| ATTGTACCATAGTCTGGATG+CGG | 0.599048 | 1.3:+53123224 | None:intergenic |
| GTCAGCCTAGACAAAGGCCG+AGG | 0.599394 | 1.3:-53128531 | MS.gene51446:CDS |
| ACTCATCATAACGCTCATCC+GGG | 0.599580 | 1.3:+53123334 | None:intergenic |
| AGTGTATGATGGATGCATAA+TGG | 0.603498 | 1.3:-53126787 | MS.gene51446:CDS |
| CACAATGGCTAACTGTCAGA+TGG | 0.603736 | 1.3:-53127374 | MS.gene51446:CDS |
| TAAGTGGTCAACTGGCCACC+CGG | 0.607543 | 1.3:-53126305 | MS.gene51446:CDS |
| CTCTACTGAAGCTTTGTATG+CGG | 0.610654 | 1.3:+53126270 | None:intergenic |
| TAGAGCTAGACCGTATTCAA+GGG | 0.616435 | 1.3:-53126252 | MS.gene51446:CDS |
| GTCGAGCACGTTGAAAACTT+CGG | 0.617161 | 1.3:-53123053 | MS.gene51446:CDS |
| TGCCGCAAAACCCATCAGCA+TGG | 0.621412 | 1.3:-53126562 | MS.gene51446:CDS |
| CACCGGTATCACTTTGTCAG+AGG | 0.623821 | 1.3:-53124027 | MS.gene51446:CDS |
| AACTCTCAAAACACTCTTGG+GGG | 0.624346 | 1.3:+53125390 | None:intergenic |
| CCTGAAGTAGGTGGTGATTG+CGG | 0.626365 | 1.3:+53127506 | None:intergenic |
| TATGAGAAAGAAGATTACTT+GGG | 0.626650 | 1.3:-53131282 | MS.gene51446:CDS |
| AATATGAGAGTTGCAGTGGT+TGG | 0.628362 | 1.3:-53131369 | MS.gene51446:CDS |
| AAAATTTCATGGAAAAGCAG+AGG | 0.628592 | 1.3:-53122995 | MS.gene51446:intron |
| GAGAAAGAAGATTACTTGGG+AGG | 0.629633 | 1.3:-53131279 | MS.gene51446:CDS |
| GGCTAAAGGTGGAGTCAATG+TGG | 0.630863 | 1.3:-53131310 | MS.gene51446:CDS |
| GAACTCTCAAAACACTCTTG+GGG | 0.638316 | 1.3:+53125389 | None:intergenic |
| TGAATGCAGTAACGTTCCCA+GGG | 0.641508 | 1.3:+53122662 | None:intergenic |
| CATACCTTCCAATAAAATTG+GGG | 0.646666 | 1.3:+53125361 | None:intergenic |
| GATGTGATCCTACTTAGAGA+GGG | 0.646927 | 1.3:+53123258 | None:intergenic |
| TCAGGAATCTAGTTACAAAG+AGG | 0.657976 | 1.3:+53125750 | None:intergenic |
| AACTCACGTTAAAGAACCAG+TGG | 0.662119 | 1.3:+53125715 | None:intergenic |
| TACAGCTTATTGGAGGAAGG+AGG | 0.662186 | 1.3:-53125451 | MS.gene51446:intron |
| GGGCAATTCCTCAAGTCAAG+GGG | 0.666111 | 1.3:-53127742 | MS.gene51446:CDS |
| AGAACTGGTTGCAAATACAC+CGG | 0.676836 | 1.3:-53124044 | MS.gene51446:CDS |
| AGCTCTTTGGTAGACCACAA+TGG | 0.677786 | 1.3:-53127389 | MS.gene51446:CDS |
| TCAGACCAACCCTAAGCACA+TGG | 0.680819 | 1.3:-53125801 | MS.gene51446:CDS |
| CGGCAACTGATGGGACCGGG+TGG | 0.683926 | 1.3:+53126290 | None:intergenic |
| TGATCCTACTTAGAGAGGGT+AGG | 0.687401 | 1.3:+53123262 | None:intergenic |
| GTCCTAGTACCTGAAGTAGG+TGG | 0.687844 | 1.3:+53127497 | None:intergenic |
| TGTTTGTCAGGTCATGACAC+AGG | 0.688622 | 1.3:-53124993 | MS.gene51446:intron |
| TATTGAAGACCATGAAACCA+AGG | 0.698659 | 1.3:+53131217 | None:intergenic |
| TGGATCACAATGAGTCTCTG+GGG | 0.710739 | 1.3:-53127762 | MS.gene51446:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 53122636 | 53131388 | 53122636 | ID=MS.gene51446 |
| chr1.3 | mRNA | 53122636 | 53131388 | 53122636 | ID=MS.gene51446.t1;Parent=MS.gene51446 |
| chr1.3 | exon | 53131215 | 53131388 | 53131215 | ID=MS.gene51446.t1.exon1;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53131215 | 53131388 | 53131215 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53128411 | 53128628 | 53128411 | ID=MS.gene51446.t1.exon2;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53128411 | 53128628 | 53128411 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53127711 | 53127816 | 53127711 | ID=MS.gene51446.t1.exon3;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53127711 | 53127816 | 53127711 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53127507 | 53127608 | 53127507 | ID=MS.gene51446.t1.exon4;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53127507 | 53127608 | 53127507 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53127350 | 53127409 | 53127350 | ID=MS.gene51446.t1.exon5;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53127350 | 53127409 | 53127350 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53126943 | 53127021 | 53126943 | ID=MS.gene51446.t1.exon6;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53126943 | 53127021 | 53126943 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53126696 | 53126843 | 53126696 | ID=MS.gene51446.t1.exon7;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53126696 | 53126843 | 53126696 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53126493 | 53126616 | 53126493 | ID=MS.gene51446.t1.exon8;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53126493 | 53126616 | 53126493 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53126218 | 53126398 | 53126218 | ID=MS.gene51446.t1.exon9;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53126218 | 53126398 | 53126218 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53126016 | 53126044 | 53126016 | ID=MS.gene51446.t1.exon10;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53126016 | 53126044 | 53126016 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53125722 | 53125870 | 53125722 | ID=MS.gene51446.t1.exon11;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53125722 | 53125870 | 53125722 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53125366 | 53125468 | 53125366 | ID=MS.gene51446.t1.exon12;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53125366 | 53125468 | 53125366 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53124910 | 53125005 | 53124910 | ID=MS.gene51446.t1.exon13;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53124910 | 53125005 | 53124910 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53124769 | 53124821 | 53124769 | ID=MS.gene51446.t1.exon14;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53124769 | 53124821 | 53124769 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53124563 | 53124686 | 53124563 | ID=MS.gene51446.t1.exon15;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53124563 | 53124686 | 53124563 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53124402 | 53124464 | 53124402 | ID=MS.gene51446.t1.exon16;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53124402 | 53124464 | 53124402 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53124223 | 53124282 | 53124223 | ID=MS.gene51446.t1.exon17;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53124223 | 53124282 | 53124223 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53123980 | 53124141 | 53123980 | ID=MS.gene51446.t1.exon18;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53123980 | 53124141 | 53123980 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53123740 | 53123813 | 53123740 | ID=MS.gene51446.t1.exon19;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53123740 | 53123813 | 53123740 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53123556 | 53123649 | 53123556 | ID=MS.gene51446.t1.exon20;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53123556 | 53123649 | 53123556 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53123231 | 53123367 | 53123231 | ID=MS.gene51446.t1.exon21;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53123231 | 53123367 | 53123231 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53122996 | 53123076 | 53122996 | ID=MS.gene51446.t1.exon22;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53122996 | 53123076 | 53122996 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53122790 | 53122895 | 53122790 | ID=MS.gene51446.t1.exon23;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53122790 | 53122895 | 53122790 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| chr1.3 | exon | 53122636 | 53122698 | 53122636 | ID=MS.gene51446.t1.exon24;Parent=MS.gene51446.t1 |
| chr1.3 | CDS | 53122636 | 53122698 | 53122636 | ID=cds.MS.gene51446.t1;Parent=MS.gene51446.t1 |
| Gene Sequence |
| Protein sequence |
