AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052178


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052178.t1 MTR_3g100650 89.324 281 16 3 1 274 1 274 4.70e-149 418
MS.gene052178.t1 MTR_5g065440 63.846 260 71 4 27 274 20 268 6.45e-98 288
MS.gene052178.t1 MTR_5g032600 54.167 216 70 7 71 274 74 272 3.29e-61 194
MS.gene052178.t1 MTR_4g134580 43.515 239 92 6 74 273 112 346 2.32e-54 180
MS.gene052178.t1 MTR_1g077020 44.554 202 91 3 72 273 6 186 1.05e-52 170
MS.gene052178.t1 MTR_2g076780 43.541 209 99 5 75 273 37 236 5.02e-48 160
MS.gene052178.t1 MTR_5g020510 43.333 210 105 3 70 273 94 295 7.43e-48 161
MS.gene052178.t1 MTR_8g069080 42.788 208 103 3 74 273 68 267 3.64e-47 158
MS.gene052178.t1 MTR_7g010300 41.121 214 98 5 72 273 85 282 7.83e-46 157
MS.gene052178.t1 MTR_6g012280 42.786 201 106 4 75 273 91 284 1.25e-38 138
MS.gene052178.t1 MTR_8g069380 51.163 86 41 1 189 274 31 115 2.49e-21 87.0
MS.gene052178.t1 MTR_3g039810 61.290 62 24 0 73 134 18 79 1.04e-20 84.3
MS.gene052178.t1 MTR_8g051480 54.667 75 33 1 199 273 55 128 1.42e-20 85.1
MS.gene052178.t1 MTR_8g442330 34.756 164 68 5 85 248 15 139 5.96e-20 84.0
MS.gene052178.t1 MTR_7g070643 80.435 46 9 0 68 113 75 120 9.30e-19 82.0
MS.gene052178.t1 MTR_8g467340 53.968 63 29 0 211 273 271 333 2.65e-18 84.0
MS.gene052178.t1 MTR_8g467340 56.364 55 22 1 72 124 61 115 4.25e-13 68.9
MS.gene052178.t1 MTR_6g080300 80.952 42 8 0 72 113 51 92 1.46e-17 76.3
MS.gene052178.t1 MTR_6g073013 55.000 60 26 1 211 269 101 160 1.33e-16 76.3
MS.gene052178.t1 MTR_6g073013 52.000 50 23 1 75 123 19 68 6.94e-11 60.5
MS.gene052178.t1 MTR_6g012220 55.769 52 19 1 72 123 18 65 3.60e-13 63.9
MS.gene052178.t1 MTR_2g007810 93.103 29 2 0 85 113 19 47 2.80e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052178.t1 AT4G24660 53.202 203 65 5 73 274 47 220 6.94e-66 205
MS.gene052178.t1 AT4G24660 52.261 199 65 5 73 270 47 216 1.18e-62 197
MS.gene052178.t1 AT2G02540 37.931 261 135 6 28 273 36 284 9.75e-60 192
MS.gene052178.t1 AT2G02540 37.931 261 135 6 28 273 36 284 9.75e-60 192
MS.gene052178.t1 AT1G14440 46.117 206 93 6 73 273 88 280 3.53e-53 175
MS.gene052178.t1 AT1G14440 46.117 206 93 6 73 273 88 280 3.53e-53 175
MS.gene052178.t1 AT5G65410 45.536 224 74 5 65 274 65 254 5.10e-51 169
MS.gene052178.t1 AT2G18350 47.317 205 84 4 71 273 78 260 5.39e-50 166
MS.gene052178.t1 AT1G75240 41.126 231 108 2 72 274 73 303 1.03e-45 156
MS.gene052178.t1 AT3G50890 43.415 205 89 5 74 272 59 242 1.52e-45 154
MS.gene052178.t1 AT1G69600 41.000 200 103 6 73 270 29 215 6.03e-37 131
MS.gene052178.t1 AT5G15210 37.619 210 104 4 65 267 46 235 9.52e-37 132
MS.gene052178.t1 AT3G28920 33.766 231 91 4 73 270 50 251 5.61e-34 125
MS.gene052178.t1 AT5G60480 37.931 203 88 4 72 268 34 204 1.84e-32 119
MS.gene052178.t1 AT1G74660 69.355 62 19 0 73 134 37 98 2.22e-24 94.7
MS.gene052178.t1 AT1G74660 72.414 58 16 0 73 130 37 94 4.08e-24 93.6
MS.gene052178.t1 AT5G42780 31.553 206 100 5 75 270 64 238 5.87e-24 97.4
MS.gene052178.t1 AT3G28917 66.667 60 19 1 72 130 30 89 1.56e-21 87.0
MS.gene052178.t1 AT1G18835 60.317 63 22 1 72 134 23 82 1.73e-19 81.3
MS.gene052178.t1 AT5G39760 53.846 65 30 0 209 273 198 262 5.09e-19 85.5
MS.gene052178.t1 AT1G14687 26.866 201 104 7 71 267 3 164 5.27e-14 68.9

Find 89 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCATTTGCGGAGAAAAT+TGG 0.226300 3.2:-83874935 MS.gene052178:CDS
TAACATGCCACCGGCGTAAC+AGG 0.280829 3.2:+83875541 None:intergenic
TTTCTTTGCGGTGAAAGTTC+CGG 0.342082 3.2:+83875263 None:intergenic
CTTCTTCCTCTTCCTCCTCT+AGG 0.360974 3.2:+83875590 None:intergenic
GGTGGTAGTGGAGGAGGAAG+TGG 0.392563 3.2:-83875010 MS.gene052178:CDS
TATCAAGAGACATGTGCTTA+AGG 0.397983 3.2:-83874855 MS.gene052178:CDS
ACCGCCTGTGGCGGTGGCTG+TGG 0.407928 3.2:+83875447 None:intergenic
AGAGACATGTGCTTAAGGTT+TGG 0.408486 3.2:-83874850 MS.gene052178:CDS
GGATAAGATGCTTGCATTTG+CGG 0.410009 3.2:-83874945 MS.gene052178:CDS
ATTGATGGTGGTGGTGTTGA+GGG 0.417800 3.2:+83875206 None:intergenic
CCACCACCACCGCTGCTGCT+TGG 0.417998 3.2:+83875031 None:intergenic
AGCAGCAGCGGTGGTGGTGG+TGG 0.434714 3.2:-83875028 MS.gene052178:CDS
AAAATTCACACAGGAACAAA+AGG 0.449497 3.2:-83874966 MS.gene052178:CDS
AACGGACGATGTTGTGATAT+CGG 0.449782 3.2:+83875115 None:intergenic
TTGTATCTGACCGTTCCTGC+TGG 0.450197 3.2:+83875409 None:intergenic
CACAATAACAAGCACACTCT+TGG 0.453753 3.2:-83874824 MS.gene052178:CDS
GCAGCCACAGCCACCGCCAC+AGG 0.454683 3.2:-83875451 MS.gene052178:CDS
GGTGGTGGTGGTAGTGGAGG+AGG 0.457454 3.2:-83875016 MS.gene052178:CDS
GACACCACCGCCTGTGGCGG+TGG 0.458751 3.2:+83875441 None:intergenic
TTGTGATATCGGTGGAGTTA+CGG 0.462629 3.2:+83875126 None:intergenic
ATTCACCGTCGATTTCTTTG+CGG 0.470970 3.2:+83875251 None:intergenic
CCAAGCAGCAGCGGTGGTGG+TGG 0.471348 3.2:-83875031 MS.gene052178:CDS
TTGCATTTGCGGAGAAAATT+GGG 0.474261 3.2:-83874934 MS.gene052178:CDS
GTTGAGGGTGATGAGACCGC+TGG 0.475704 3.2:+83875221 None:intergenic
GATTGATGGTGGTGGTGTTG+AGG 0.481387 3.2:+83875205 None:intergenic
TGGTGGAAACCAGGCGGAGG+AGG 0.482300 3.2:+83875154 None:intergenic
CGCTTGGAAACTCAGGAGTT+AGG 0.485005 3.2:-83875513 MS.gene052178:CDS
AACGCTGCACGGTGGTAGTA+AGG 0.486813 3.2:+83875178 None:intergenic
TCCACCAGCTGCATCGAGTA+GGG 0.488823 3.2:-83875086 MS.gene052178:CDS
AATGGGGTTCCCTGTTACGC+CGG 0.489920 3.2:-83875551 MS.gene052178:CDS
CGAAGACCTAGAGGAGGAAG+AGG 0.490659 3.2:-83875596 MS.gene052178:CDS
GCAGCGTTACCTCCTCCGCC+TGG 0.493199 3.2:-83875163 MS.gene052178:CDS
TTCCAGTGTTCCTTCTTCTC+CGG 0.499051 3.2:+83875315 None:intergenic
GAGGAAGTGGAACGAAGAAA+AGG 0.501558 3.2:-83874997 MS.gene052178:CDS
ACAGGCGGTGGTGTCAAAAG+TGG 0.508398 3.2:-83875433 MS.gene052178:CDS
AATCCAAGCAGCAGCGGTGG+TGG 0.510288 3.2:-83875034 MS.gene052178:CDS
TTGAGGGTGATGAGACCGCT+GGG 0.515445 3.2:+83875222 None:intergenic
GGTGGAATCGGTTCAGCGGA+CGG 0.518412 3.2:-83875478 MS.gene052178:CDS
GGTAGTAAGGTGATGATTGA+TGG 0.522359 3.2:+83875191 None:intergenic
GGTGTCAAAAGTGGGCCAGC+AGG 0.527350 3.2:-83875424 MS.gene052178:CDS
TGGTGGTGGAAACCAGGCGG+AGG 0.539701 3.2:+83875151 None:intergenic
GTGGAGTTACGGAGTGGTGG+TGG 0.542600 3.2:+83875137 None:intergenic
AGAAGAAGGAACACTGGAAG+CGG 0.543572 3.2:-83875311 MS.gene052178:CDS
GTGCTGCTTGTAACTGTCAC+CGG 0.544839 3.2:-83875282 MS.gene052178:CDS
CAAAAGTGGGCCAGCAGGAA+CGG 0.546267 3.2:-83875419 MS.gene052178:CDS
GGGGTTCCCTGTTACGCCGG+TGG 0.551765 3.2:-83875548 MS.gene052178:CDS
ACAGCCACCGCCACAGGCGG+TGG 0.555495 3.2:-83875445 MS.gene052178:CDS
GTGGCATGTTACGACTCGCT+TGG 0.557648 3.2:-83875529 MS.gene052178:CDS
AAGAATCACGCCGTCAGCAT+AGG 0.558884 3.2:-83875376 MS.gene052178:CDS
ACGGAGTGGTGGTGGAAACC+AGG 0.562207 3.2:+83875145 None:intergenic
TTTGACACCACCGCCTGTGG+CGG 0.564151 3.2:+83875438 None:intergenic
AATCCCCTACTCGATGCAGC+TGG 0.564604 3.2:+83875082 None:intergenic
TACGACTCGCTTGGAAACTC+AGG 0.569322 3.2:-83875520 MS.gene052178:CDS
AATCACGCCGTCAGCATAGG+TGG 0.574956 3.2:-83875373 MS.gene052178:CDS
ATAGGTGGTCACGCCGTGGA+TGG 0.576462 3.2:-83875358 MS.gene052178:CDS
CCCCTACTCGATGCAGCTGG+TGG 0.577449 3.2:+83875085 None:intergenic
CAGGCGGTGGTGTCAAAAGT+GGG 0.580393 3.2:-83875432 MS.gene052178:CDS
AATTGGGTGGAGAATTCAGA+AGG 0.584858 3.2:-83874918 MS.gene052178:CDS
AACATGCCACCGGCGTAACA+GGG 0.586523 3.2:+83875542 None:intergenic
TCAAATCCAAGCAGCAGCGG+TGG 0.591349 3.2:-83875037 MS.gene052178:CDS
AGCGAGTCGTAACATGCCAC+CGG 0.591718 3.2:+83875532 None:intergenic
GCCACAGCCACCGCCACAGG+CGG 0.603984 3.2:-83875448 MS.gene052178:CDS
AGAATTCAGAAGGAAGATGA+AGG 0.605493 3.2:-83874908 MS.gene052178:CDS
GCAGCTGGTGGAAGAGCCAA+CGG 0.605589 3.2:+83875097 None:intergenic
CATTTGCGGAGAAAATTGGG+TGG 0.607411 3.2:-83874931 MS.gene052178:CDS
GCGGAGGAGGTAACGCTGCA+CGG 0.609223 3.2:+83875167 None:intergenic
TCGGTGGAGTTACGGAGTGG+TGG 0.614261 3.2:+83875134 None:intergenic
GGCGTGACCACCTATGCTGA+CGG 0.619665 3.2:+83875366 None:intergenic
CCACCAGCTGCATCGAGTAG+GGG 0.624461 3.2:-83875085 MS.gene052178:CDS
TTCCACCAGCTGCATCGAGT+AGG 0.625338 3.2:-83875087 MS.gene052178:CDS
CAGCATAGGTGGTCACGCCG+TGG 0.632841 3.2:-83875362 MS.gene052178:CDS
TGGCGGTGGAATCGGTTCAG+CGG 0.633285 3.2:-83875482 MS.gene052178:CDS
AAGGTGATGATTGATGGTGG+TGG 0.637795 3.2:+83875197 None:intergenic
GATATCACAACATCGTCCGT+TGG 0.638979 3.2:-83875113 MS.gene052178:CDS
TGCCGGAGAAGAAGGAACAC+TGG 0.644421 3.2:-83875317 MS.gene052178:CDS
GGACGATGTTGTGATATCGG+TGG 0.659157 3.2:+83875118 None:intergenic
GAGTGGTGGTGGAAACCAGG+CGG 0.674377 3.2:+83875148 None:intergenic
GGAATCGGTTCAGCGGACGG+AGG 0.678169 3.2:-83875475 MS.gene052178:CDS
GTTTAGAACAAAATTCACAC+AGG 0.682835 3.2:-83874975 MS.gene052178:CDS
TGATGAACACGAAGACCTAG+AGG 0.684893 3.2:-83875605 MS.gene052178:CDS
AAACTCGCAACATCCATCCA+CGG 0.687116 3.2:+83875345 None:intergenic
AGTAAGGTGATGATTGATGG+TGG 0.691042 3.2:+83875194 None:intergenic
GTGTCAAATCCAAGCAGCAG+CGG 0.696717 3.2:-83875040 MS.gene052178:CDS
TTTCACCGCAAAGAAATCGA+CGG 0.699703 3.2:-83875256 MS.gene052178:CDS
TGAACACGAAGACCTAGAGG+AGG 0.711856 3.2:-83875602 MS.gene052178:CDS
ATATCGGTGGAGTTACGGAG+TGG 0.773672 3.2:+83875131 None:intergenic
ACGGTGAATTCACTCCCCAG+CGG 0.785774 3.2:-83875237 MS.gene052178:CDS
GAGGAGGTAACGCTGCACGG+TGG 0.795380 3.2:+83875170 None:intergenic
TGAGGGTGATGAGACCGCTG+GGG 0.809094 3.2:+83875223 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAAATTCACACAGGAACAAA+AGG - chr3.2:83875458-83875477 MS.gene052178:CDS 30.0%
AAGAAGAAGAAGAAGAAATG+GGG - chr3.2:83874857-83874876 MS.gene052178:CDS 30.0%
AGAAGAAGAAGAAGAAGAAA+TGG - chr3.2:83874855-83874874 MS.gene052178:CDS 30.0%
GAAGAAGAAGAAGAAGAAAT+GGG - chr3.2:83874856-83874875 MS.gene052178:CDS 30.0%
! GTTTAGAACAAAATTCACAC+AGG - chr3.2:83875449-83875468 MS.gene052178:CDS 30.0%
AGAATTCAGAAGGAAGATGA+AGG - chr3.2:83875516-83875535 MS.gene052178:CDS 35.0%
TATCAAGAGACATGTGCTTA+AGG - chr3.2:83875569-83875588 MS.gene052178:CDS 35.0%
TTGCATTTGCGGAGAAAATT+GGG - chr3.2:83875490-83875509 MS.gene052178:CDS 35.0%
AACGGACGATGTTGTGATAT+CGG + chr3.2:83875312-83875331 None:intergenic 40.0%
AATTGGGTGGAGAATTCAGA+AGG - chr3.2:83875506-83875525 MS.gene052178:CDS 40.0%
AGAGACATGTGCTTAAGGTT+TGG - chr3.2:83875574-83875593 MS.gene052178:CDS 40.0%
AGTAAGGTGATGATTGATGG+TGG + chr3.2:83875233-83875252 None:intergenic 40.0%
CACAATAACAAGCACACTCT+TGG - chr3.2:83875600-83875619 MS.gene052178:CDS 40.0%
CTTGCATTTGCGGAGAAAAT+TGG - chr3.2:83875489-83875508 MS.gene052178:CDS 40.0%
GGATAAGATGCTTGCATTTG+CGG - chr3.2:83875479-83875498 MS.gene052178:CDS 40.0%
GGTAGTAAGGTGATGATTGA+TGG + chr3.2:83875236-83875255 None:intergenic 40.0%
TCAGGAGTTAGGTCCAAAAA+TGG - chr3.2:83874922-83874941 MS.gene052178:CDS 40.0%
TTGTGATATCGGTGGAGTTA+CGG + chr3.2:83875301-83875320 None:intergenic 40.0%
TTTCACCGCAAAGAAATCGA+CGG - chr3.2:83875168-83875187 MS.gene052178:CDS 40.0%
TTTCTTTGCGGTGAAAGTTC+CGG + chr3.2:83875164-83875183 None:intergenic 40.0%
!! ATTCACCGTCGATTTCTTTG+CGG + chr3.2:83875176-83875195 None:intergenic 40.0%
AAACTCGCAACATCCATCCA+CGG + chr3.2:83875082-83875101 None:intergenic 45.0%
AGAAGAAGGAACACTGGAAG+CGG - chr3.2:83875113-83875132 MS.gene052178:CDS 45.0%
CATTTGCGGAGAAAATTGGG+TGG - chr3.2:83875493-83875512 MS.gene052178:CDS 45.0%
GAGGAAGTGGAACGAAGAAA+AGG - chr3.2:83875427-83875446 MS.gene052178:CDS 45.0%
GATATCACAACATCGTCCGT+TGG - chr3.2:83875311-83875330 MS.gene052178:CDS 45.0%
GGAGTTAGGTCCAAAAATGG+CGG - chr3.2:83874925-83874944 MS.gene052178:CDS 45.0%
TCCAAAAATGGCGGTGGAAT+CGG - chr3.2:83874934-83874953 MS.gene052178:CDS 45.0%
TGATGAACACGAAGACCTAG+AGG - chr3.2:83874819-83874838 MS.gene052178:CDS 45.0%
TTCCAGTGTTCCTTCTTCTC+CGG + chr3.2:83875112-83875131 None:intergenic 45.0%
!! AAGGTGATGATTGATGGTGG+TGG + chr3.2:83875230-83875249 None:intergenic 45.0%
!! ATTGATGGTGGTGGTGTTGA+GGG + chr3.2:83875221-83875240 None:intergenic 45.0%
!!! TGTTGCGAGTTTTTAGCTGC+CGG - chr3.2:83875090-83875109 MS.gene052178:CDS 45.0%
!!! TTTTTAGCTGCCGGAGAAGA+AGG - chr3.2:83875099-83875118 MS.gene052178:CDS 45.0%
AAGAATCACGCCGTCAGCAT+AGG - chr3.2:83875048-83875067 MS.gene052178:CDS 50.0%
ATATCGGTGGAGTTACGGAG+TGG + chr3.2:83875296-83875315 None:intergenic 50.0%
CGCTTGGAAACTCAGGAGTT+AGG - chr3.2:83874911-83874930 MS.gene052178:CDS 50.0%
CTTCTTCCTCTTCCTCCTCT+AGG + chr3.2:83874837-83874856 None:intergenic 50.0%
GGACGATGTTGTGATATCGG+TGG + chr3.2:83875309-83875328 None:intergenic 50.0%
GTGTCAAATCCAAGCAGCAG+CGG - chr3.2:83875384-83875403 MS.gene052178:CDS 50.0%
GTTAGGTCCAAAAATGGCGG+TGG - chr3.2:83874928-83874947 MS.gene052178:CDS 50.0%
TACGACTCGCTTGGAAACTC+AGG - chr3.2:83874904-83874923 MS.gene052178:CDS 50.0%
TGAACACGAAGACCTAGAGG+AGG - chr3.2:83874822-83874841 MS.gene052178:CDS 50.0%
TTGTATCTGACCGTTCCTGC+TGG + chr3.2:83875018-83875037 None:intergenic 50.0%
!! ACCGATTCCACCGCCATTTT+TGG + chr3.2:83874938-83874957 None:intergenic 50.0%
!! GATTGATGGTGGTGGTGTTG+AGG + chr3.2:83875222-83875241 None:intergenic 50.0%
!! GTGCTGCTTGTAACTGTCAC+CGG - chr3.2:83875142-83875161 MS.gene052178:CDS 50.0%
AACATGCCACCGGCGTAACA+GGG + chr3.2:83874885-83874904 None:intergenic 55.0%
AACGCTGCACGGTGGTAGTA+AGG + chr3.2:83875249-83875268 None:intergenic 55.0%
AATCACGCCGTCAGCATAGG+TGG - chr3.2:83875051-83875070 MS.gene052178:CDS 55.0%
AATCCCCTACTCGATGCAGC+TGG + chr3.2:83875345-83875364 None:intergenic 55.0%
AATGGGGTTCCCTGTTACGC+CGG - chr3.2:83874873-83874892 MS.gene052178:CDS 55.0%
ACGGTGAATTCACTCCCCAG+CGG - chr3.2:83875187-83875206 MS.gene052178:CDS 55.0%
AGCGAGTCGTAACATGCCAC+CGG + chr3.2:83874895-83874914 None:intergenic 55.0%
CAAAAGTGGGCCAGCAGGAA+CGG - chr3.2:83875005-83875024 MS.gene052178:CDS 55.0%
CGAAGACCTAGAGGAGGAAG+AGG - chr3.2:83874828-83874847 MS.gene052178:CDS 55.0%
GTGGCATGTTACGACTCGCT+TGG - chr3.2:83874895-83874914 MS.gene052178:CDS 55.0%
TAACATGCCACCGGCGTAAC+AGG + chr3.2:83874886-83874905 None:intergenic 55.0%
TCAAATCCAAGCAGCAGCGG+TGG - chr3.2:83875387-83875406 MS.gene052178:CDS 55.0%
TCCACCAGCTGCATCGAGTA+GGG - chr3.2:83875338-83875357 MS.gene052178:CDS 55.0%
TGCCGGAGAAGAAGGAACAC+TGG - chr3.2:83875107-83875126 MS.gene052178:CDS 55.0%
TTCCACCAGCTGCATCGAGT+AGG - chr3.2:83875337-83875356 MS.gene052178:CDS 55.0%
TTGAGGGTGATGAGACCGCT+GGG + chr3.2:83875205-83875224 None:intergenic 55.0%
! ACAGGCGGTGGTGTCAAAAG+TGG - chr3.2:83874991-83875010 MS.gene052178:CDS 55.0%
! ACTTTTGACACCACCGCCTG+TGG + chr3.2:83874992-83875011 None:intergenic 55.0%
! CAGGCGGTGGTGTCAAAAGT+GGG - chr3.2:83874992-83875011 MS.gene052178:CDS 55.0%
AATCCAAGCAGCAGCGGTGG+TGG - chr3.2:83875390-83875409 MS.gene052178:CDS 60.0%
ATAGGTGGTCACGCCGTGGA+TGG - chr3.2:83875066-83875085 MS.gene052178:CDS 60.0%
CCACCAGCTGCATCGAGTAG+GGG - chr3.2:83875339-83875358 MS.gene052178:CDS 60.0%
GCAGCTGGTGGAAGAGCCAA+CGG + chr3.2:83875330-83875349 None:intergenic 60.0%
GGCGTGACCACCTATGCTGA+CGG + chr3.2:83875061-83875080 None:intergenic 60.0%
GGTGTCAAAAGTGGGCCAGC+AGG - chr3.2:83875000-83875019 MS.gene052178:CDS 60.0%
GTGGAGTTACGGAGTGGTGG+TGG + chr3.2:83875290-83875309 None:intergenic 60.0%
GTTGAGGGTGATGAGACCGC+TGG + chr3.2:83875206-83875225 None:intergenic 60.0%
TCGGTGGAGTTACGGAGTGG+TGG + chr3.2:83875293-83875312 None:intergenic 60.0%
TGAGGGTGATGAGACCGCTG+GGG + chr3.2:83875204-83875223 None:intergenic 60.0%
TTTGACACCACCGCCTGTGG+CGG + chr3.2:83874989-83875008 None:intergenic 60.0%
! GGTGGAATCGGTTCAGCGGA+CGG - chr3.2:83874946-83874965 MS.gene052178:CDS 60.0%
! TGGCGGTGGAATCGGTTCAG+CGG - chr3.2:83874942-83874961 MS.gene052178:CDS 60.0%
!! ACGGAGTGGTGGTGGAAACC+AGG + chr3.2:83875282-83875301 None:intergenic 60.0%
!! GAGTGGTGGTGGAAACCAGG+CGG + chr3.2:83875279-83875298 None:intergenic 60.0%
!! GGTGGTAGTGGAGGAGGAAG+TGG - chr3.2:83875414-83875433 MS.gene052178:CDS 60.0%
CAGCATAGGTGGTCACGCCG+TGG - chr3.2:83875062-83875081 MS.gene052178:CDS 65.0%
CCCCTACTCGATGCAGCTGG+TGG + chr3.2:83875342-83875361 None:intergenic 65.0%
GAGGAGGTAACGCTGCACGG+TGG + chr3.2:83875257-83875276 None:intergenic 65.0%
GCGGAGGAGGTAACGCTGCA+CGG + chr3.2:83875260-83875279 None:intergenic 65.0%
TGGTGGAAACCAGGCGGAGG+AGG + chr3.2:83875273-83875292 None:intergenic 65.0%
! GGAATCGGTTCAGCGGACGG+AGG - chr3.2:83874949-83874968 MS.gene052178:CDS 65.0%
!! AGCGGTGGTGGTGGTGGTAG+TGG - chr3.2:83875402-83875421 MS.gene052178:CDS 65.0%
!! GGTGGTGGTGGTAGTGGAGG+AGG - chr3.2:83875408-83875427 MS.gene052178:CDS 65.0%
!! GGTGGTGGTGGTGGTAGTGG+AGG - chr3.2:83875405-83875424 MS.gene052178:CDS 65.0%
!! TGGTGGTGGAAACCAGGCGG+AGG + chr3.2:83875276-83875295 None:intergenic 65.0%
CCACCACCACCGCTGCTGCT+TGG + chr3.2:83875396-83875415 None:intergenic 70.0%
GCAGCGTTACCTCCTCCGCC+TGG - chr3.2:83875261-83875280 MS.gene052178:CDS 70.0%
GGGGTTCCCTGTTACGCCGG+TGG - chr3.2:83874876-83874895 MS.gene052178:CDS 70.0%
! CCAAGCAGCAGCGGTGGTGG+TGG - chr3.2:83875393-83875412 MS.gene052178:CDS 70.0%
!! AGCAGCAGCGGTGGTGGTGG+TGG - chr3.2:83875396-83875415 MS.gene052178:CDS 70.0%
ACAGCCACCGCCACAGGCGG+TGG - chr3.2:83874979-83874998 MS.gene052178:CDS 75.0%
ACCGCCTGTGGCGGTGGCTG+TGG + chr3.2:83874980-83874999 None:intergenic 75.0%
GACACCACCGCCTGTGGCGG+TGG + chr3.2:83874986-83875005 None:intergenic 75.0%
GCAGCCACAGCCACCGCCAC+AGG - chr3.2:83874973-83874992 MS.gene052178:CDS 75.0%
GCCACAGCCACCGCCACAGG+CGG - chr3.2:83874976-83874995 MS.gene052178:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 83874811 83875635 83874811 ID=MS.gene052178
chr3.2 mRNA 83874811 83875635 83874811 ID=MS.gene052178.t1;Parent=MS.gene052178
chr3.2 exon 83874811 83875635 83874811 ID=MS.gene052178.t1.exon1;Parent=MS.gene052178.t1
chr3.2 CDS 83874811 83875635 83874811 ID=cds.MS.gene052178.t1;Parent=MS.gene052178.t1
Gene Sequence

>MS.gene052178

ATGGAATTTGATGAACACGAAGACCTAGAGGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAATGGGGTTCCCTGTTACGCCGGTGGCATGTTACGACTCGCTTGGAAACTCAGGAGTTAGGTCCAAAAATGGCGGTGGAATCGGTTCAGCGGACGGAGGAGCAGCCACAGCCACCGCCACAGGCGGTGGTGTCAAAAGTGGGCCAGCAGGAACGGTCAGATACAAAGAATGTCAAAAGAATCACGCCGTCAGCATAGGTGGTCACGCCGTGGATGGATGTTGCGAGTTTTTAGCTGCCGGAGAAGAAGGAACACTGGAAGCGGTGATTTGTGCTGCTTGTAACTGTCACCGGAACTTTCACCGCAAAGAAATCGACGGTGAATTCACTCCCCAGCGGTCTCATCACCCTCAACACCACCACCATCAATCATCACCTTACTACCACCGTGCAGCGTTACCTCCTCCGCCTGGTTTCCACCACCACTCCGTAACTCCACCGATATCACAACATCGTCCGTTGGCTCTTCCACCAGCTGCATCGAGTAGGGGATTCAGCAGAGAAGAAGATAACGTGTCAAATCCAAGCAGCAGCGGTGGTGGTGGTGGTAGTGGAGGAGGAAGTGGAACGAAGAAAAGGTTTAGAACAAAATTCACACAGGAACAAAAGGATAAGATGCTTGCATTTGCGGAGAAAATTGGGTGGAGAATTCAGAAGGAAGATGAAGGTGCAATCGAACAATTCTGTGCTGACAATTTTATCAAGAGACATGTGCTTAAGGTTTGGATGCACAATAACAAGCACACTCTTGGTAAGAAACCCTAA

Protein sequence

>MS.gene052178.t1

MEFDEHEDLEEEEEEEEEEEEMGFPVTPVACYDSLGNSGVRSKNGGGIGSADGGAATATATGGGVKSGPAGTVRYKECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEFTPQRSHHPQHHHHQSSPYYHRAALPPPPGFHHHSVTPPISQHRPLALPPAASSRGFSREEDNVSNPSSSGGGGGSGGGSGTKKRFRTKFTQEQKDKMLAFAEKIGWRIQKEDEGAIEQFCADNFIKRHVLKVWMHNNKHTLGKKP