AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51471

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51471.t1 MTR_3g006760 99.290 704 4 1 1 703 1 704 0.0 1419
MS.gene51471.t1 MTR_3g006760 99.086 547 4 1 1 546 1 547 0.0 1107
MS.gene51471.t1 MTR_8g043980 76.307 574 102 11 142 703 195 746 0.0 849
MS.gene51471.t1 MTR_2g084355 68.687 198 36 1 348 545 6 177 2.10e-87 275
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51471.t1 AT2G27100 61.300 646 202 19 84 703 97 720 0.0 695

Find 242 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGTAACCTTCGCTTTAA+AGG 0.144365 3.4:+2232307 None:intergenic
GCCTTTAAAGCGAAGGTTAC+TGG 0.178081 3.4:-2232308 MS.gene51471:CDS
CCGTGGCTTAACATCTATTA+AGG 0.179953 3.4:-2233302 MS.gene51471:CDS
ATATCTTCTTGTATCCTTCT+AGG 0.180061 3.4:+2233457 None:intergenic
CGTAAGCTTGACAAGGAAAA+AGG 0.217997 3.4:-2233412 MS.gene51471:CDS
ATCTGTTTCCTCCTCTGAAT+TGG 0.224196 3.4:+2233570 None:intergenic
ATGACAGTAACTTCTTCTTC+TGG 0.235175 3.4:+2230914 None:intergenic
TCTTCATGCCTTGCTCCTTC+TGG 0.255229 3.4:+2233163 None:intergenic
GGATATCAAAACGGAATTTC+TGG 0.258959 3.4:-2236666 MS.gene51471:intron
ATTCATGGTGTAGATTATTA+TGG 0.272200 3.4:-2233229 MS.gene51471:CDS
AAGTTGCGATGCAGATGTTT+AGG 0.279432 3.4:-2231957 MS.gene51471:CDS
CTCCTCTGAATTGGGCTCAC+TGG 0.296081 3.4:+2233579 None:intergenic
TAGCGGCGGTCACGATAGTT+AGG 0.305964 3.4:+2238090 None:intergenic
GGGTTGGGGTTAGGTGGAGG+TGG 0.324888 3.4:+2238249 None:intergenic
TCTGTTTCCTCCTCTGAATT+GGG 0.330335 3.4:+2233571 None:intergenic
ACATGGCAGGGGATCTAATA+AGG 0.335645 3.4:-2233527 MS.gene51471:CDS
GAAAAGTATGGTTGGAAGTA+TGG 0.336039 3.4:-2232983 MS.gene51471:CDS
ACTGGCTTGCTCTGATTTAG+TGG 0.341815 3.4:+2233597 None:intergenic
AGTTGCGATGCAGATGTTTA+GGG 0.344816 3.4:-2231956 MS.gene51471:CDS
ACACACTTATAACATATCTT+TGG 0.344912 3.4:-2233255 MS.gene51471:CDS
AACATCTATTAAGGGCTTAG+AGG 0.355957 3.4:-2233293 MS.gene51471:CDS
GGAGGTGGAGCGGTGGTGGT+TGG 0.356369 3.4:+2238288 None:intergenic
AACATCTGCATCGCAACTTC+TGG 0.357957 3.4:+2231961 None:intergenic
AAATCGCGACGACGAGGGTT+GGG 0.359076 3.4:+2238234 None:intergenic
CTCCTGGATGAATTGCTTAT+AGG 0.362268 3.4:+2234380 None:intergenic
CGCGGCCACCTCGGCCGCCA+CGG 0.365642 3.4:+2238172 None:intergenic
ACATATCTTTGGCGGATTCA+TGG 0.376855 3.4:-2233244 MS.gene51471:CDS
CTCCGCATCCGTCGGGGATC+AGG 0.378643 3.4:+2231832 None:intergenic
CATAGACTATCGGAGCTTGT+AGG 0.379735 3.4:-2230894 None:intergenic
CCAGGTACAGGCATCAAAAC+TGG 0.382108 3.4:+2232106 None:intergenic
CGACGACGAGGGTTGGGGTT+AGG 0.385071 3.4:+2238240 None:intergenic
TTGTTCTGTCGCTCCTATCC+TGG 0.391046 3.4:+2232248 None:intergenic
ATTACTGTAAGTAAATTTGT+TGG 0.391234 3.4:+2233979 None:intergenic
GGCCGAGGTGGCCGCGGTGG+AGG 0.393766 3.4:-2238165 MS.gene51471:CDS
CGTGGCGGCCGAGGTGGCCG+CGG 0.394289 3.4:-2238171 MS.gene51471:CDS
CCCCTTCTAGATCTCTTATA+CGG 0.400477 3.4:+2238030 None:intergenic
TATGAACGGGGAGGTGGAAG+GGG 0.400499 3.4:-2236741 MS.gene51471:CDS
TCAGGAATGACGATGCGTTC+TGG 0.403076 3.4:-2231907 MS.gene51471:CDS
TGACAGTAACTTCTTCTTCT+GGG 0.410350 3.4:+2230915 None:intergenic
TTTATACCTATTCAGGCCTC+TGG 0.412686 3.4:-2232004 MS.gene51471:intron
GCCTGGATCCCTTGGAAGTA+AGG 0.418306 3.4:-2233075 MS.gene51471:CDS
CACTTATAACATATCTTTGG+CGG 0.418530 3.4:-2233252 MS.gene51471:CDS
AAAATTAGGGATGAAAAGTA+TGG 0.418748 3.4:-2232995 MS.gene51471:CDS
CGAGGGTTGGGGTTAGGTGG+AGG 0.418872 3.4:+2238246 None:intergenic
GTTAGTTCCAACACAAGCTC+TGG 0.419611 3.4:+2232887 None:intergenic
AGGAGGAGGTGGAGCGGTGG+TGG 0.419667 3.4:+2238284 None:intergenic
CGTGGCTTAACATCTATTAA+GGG 0.420071 3.4:-2233301 MS.gene51471:CDS
GCAGAGAAGGTTGGACAGCC+TGG 0.420227 3.4:-2233092 MS.gene51471:CDS
CGTCCTCACCGTGGCGGCCG+AGG 0.422279 3.4:-2238180 MS.gene51471:CDS
TAAGTACCTCCGCATCCGTC+GGG 0.423656 3.4:+2231825 None:intergenic
AGAAGATATTCATCAGGTTC+AGG 0.424015 3.4:-2233443 MS.gene51471:CDS
CGAGGTGGCCGCGGTGGAGG+TGG 0.424378 3.4:-2238162 MS.gene51471:CDS
CTTAGAGGGTGTTGAGCTAC+TGG 0.424649 3.4:-2233278 MS.gene51471:CDS
GGCGTTCCACCAGGAGCATC+AGG 0.425251 3.4:+2232720 None:intergenic
GAACGGGGAGGTGGAAGGGG+TGG 0.427644 3.4:-2236738 MS.gene51471:CDS
GAATGAAAATGCTCGACGTT+TGG 0.427952 3.4:-2233797 MS.gene51471:CDS
AGCTAAGTCGGGGTCAGAAT+GGG 0.431013 3.4:-2233137 MS.gene51471:CDS
CTTTGCAGTCCTTACTTCCA+AGG 0.431457 3.4:+2233066 None:intergenic
CACCTCCACCGCGGCCACCT+CGG 0.431991 3.4:+2238163 None:intergenic
TCACTTCGGTGGCTATGAAC+GGG 0.433155 3.4:-2236754 MS.gene51471:CDS
TGAAAGATGATCGTGGGAAT+CGG 0.435042 3.4:-2232276 MS.gene51471:CDS
TCCTTACTTCCAAGGGATCC+AGG 0.438671 3.4:+2233074 None:intergenic
TGCGTTCTGGTCCTCACATA+GGG 0.441667 3.4:-2231894 MS.gene51471:CDS
ACCTGAGATTGCTGCATGAC+AGG 0.446698 3.4:+2232699 None:intergenic
CTGTCAGTTCTGAACCTAGA+AGG 0.448137 3.4:-2233471 MS.gene51471:CDS
GGAACTAACATCAAAATTGC+GGG 0.448450 3.4:-2232873 MS.gene51471:CDS
GTATATCATCTTCAAGCTCC+TGG 0.449728 3.4:+2234364 None:intergenic
GGTTTCCCAACTGCCTCTCA+TGG 0.451422 3.4:+2232197 None:intergenic
TCATGGGATGGCGAACTGTC+AGG 0.456344 3.4:+2232214 None:intergenic
GTTGGACAGCCTGGATCCCT+TGG 0.462251 3.4:-2233083 MS.gene51471:CDS
TTATGCAATTACCTGTCGTT+AGG 0.463422 3.4:+2237994 None:intergenic
CAGCTAAGTCGGGGTCAGAA+TGG 0.467971 3.4:-2233138 MS.gene51471:CDS
TTGATGCCTGTACCTGGTGC+CGG 0.468596 3.4:-2232100 MS.gene51471:CDS
TGATGCCTGTACCTGGTGCC+GGG 0.471237 3.4:-2232099 MS.gene51471:intron
CGACGAGACTGCTGCGGAGG+AGG 0.471743 3.4:+2238063 None:intergenic
CATGAAGAAACAGCTAAGTC+GGG 0.472186 3.4:-2233148 MS.gene51471:CDS
GATAGGAGCGACAGAACAAA+TGG 0.472382 3.4:-2232244 MS.gene51471:CDS
TATGATTTGTGCAGAAATCC+AGG 0.472977 3.4:-2233634 MS.gene51471:intron
GGAGGTGGGAGATCGTCGTC+AGG 0.475713 3.4:+2238264 None:intergenic
CGCCGTATAAGAGATCTAGA+AGG 0.476081 3.4:-2238032 MS.gene51471:CDS
GCCTGTCATGCAGCAATCTC+AGG 0.476952 3.4:-2232700 MS.gene51471:intron
GAACTGACAGGGTGAGCCTT+CGG 0.478155 3.4:+2233484 None:intergenic
CGATTTCTCTGCTGCTCCGA+AGG 0.478520 3.4:-2233500 MS.gene51471:CDS
ATCGCAACTTCTGGTGGAGC+AGG 0.479254 3.4:+2231970 None:intergenic
TCTCACATGCCTAAAACCTT+TGG 0.481229 3.4:+2233186 None:intergenic
GGTGGCTATGAACGGGGAGG+TGG 0.481462 3.4:-2236747 MS.gene51471:CDS
TCCCACGATCATCTTTCAAT+CGG 0.481981 3.4:+2232281 None:intergenic
GTGGATGCAGAGTTTAAACC+TGG 0.485312 3.4:+2233616 None:intergenic
GGCAGATTTCCACATCGATC+TGG 0.487532 3.4:-2236693 MS.gene51471:CDS
TGTAGTGATCCTGATGCTCC+TGG 0.490637 3.4:-2232729 MS.gene51471:intron
GGCGGCCGAGGTGGCCGCGG+TGG 0.490769 3.4:-2238168 MS.gene51471:CDS
GCTATGAACGGGGAGGTGGA+AGG 0.493281 3.4:-2236743 MS.gene51471:CDS
CCATCCCATGAGAGGCAGTT+GGG 0.495045 3.4:-2232202 MS.gene51471:CDS
TCGTGGGAATCGGCGAGACC+AGG 0.497837 3.4:-2232266 MS.gene51471:CDS
CCATCTTCGTATGATCCATC+AGG 0.498285 3.4:-2231925 MS.gene51471:CDS
ATACCACTCCGCATCCTTGT+GGG 0.498677 3.4:+2234159 None:intergenic
AAAATCGCGACGACGAGGGT+TGG 0.499103 3.4:+2238233 None:intergenic
GGTTGGGGTTAGGTGGAGGT+GGG 0.500708 3.4:+2238250 None:intergenic
CTCGGCCGCCACGGTGAGGA+CGG 0.500922 3.4:+2238181 None:intergenic
CATAGCCACCGAAGTGATCA+TGG 0.502264 3.4:+2236760 None:intergenic
GCATGAAGAAACAGCTAAGT+CGG 0.504054 3.4:-2233149 MS.gene51471:CDS
TTTGCAGTCCTTACTTCCAA+GGG 0.506157 3.4:+2233067 None:intergenic
GAGCGGTGGTGGTTGGAGAT+CGG 0.506162 3.4:+2238295 None:intergenic
ATGCGTTCTGGTCCTCACAT+AGG 0.506680 3.4:-2231895 MS.gene51471:CDS
GGCATCAAAACTGGAGGAGG+GGG 0.507533 3.4:+2232115 None:intergenic
CAAATCTGCATAACCGCGAT+TGG 0.508789 3.4:+2235312 None:intergenic
TTTAGGCATGTGAGACCAGA+AGG 0.513433 3.4:-2233178 MS.gene51471:CDS
ATGCAGATGTTTAGGGATCA+AGG 0.515375 3.4:-2231949 MS.gene51471:CDS
ATCTGCATCGCAACTTCTGG+TGG 0.515886 3.4:+2231964 None:intergenic
AATCGCGACGACGAGGGTTG+GGG 0.517751 3.4:+2238235 None:intergenic
CTATGAACGGGGAGGTGGAA+GGG 0.518205 3.4:-2236742 MS.gene51471:CDS
AGATCGTCGTCAGGAGGAGG+TGG 0.519392 3.4:+2238273 None:intergenic
GGGAGATCGTCGTCAGGAGG+AGG 0.522110 3.4:+2238270 None:intergenic
GTTATGCAGATTTGCCAAGT+GGG 0.524038 3.4:-2235303 MS.gene51471:CDS
TGCATGACAGGCGTTCCACC+AGG 0.524219 3.4:+2232711 None:intergenic
ATCACTTCGGTGGCTATGAA+CGG 0.525110 3.4:-2236755 MS.gene51471:CDS
GATACAAGAAGATATTCATC+AGG 0.525306 3.4:-2233449 MS.gene51471:CDS
CCCAACTGCCTCTCATGGGA+TGG 0.526209 3.4:+2232202 None:intergenic
TATACTCTGACTTGTACTCT+TGG 0.527237 3.4:+2234212 None:intergenic
ACCAACCCGGCACCAGGTAC+AGG 0.528126 3.4:+2232094 None:intergenic
GAAACAATGTTCGATGCATA+TGG 0.530275 3.4:-2232169 MS.gene51471:CDS
TCTGGTGGAGCAGGAACAAA+GGG 0.532051 3.4:+2231979 None:intergenic
TTAGGGATGAAAAGTATGGT+TGG 0.532966 3.4:-2232991 MS.gene51471:CDS
CTTCTAGGTTCAGAACTGAC+AGG 0.537567 3.4:+2233472 None:intergenic
TAAGGCTCGCAGTGGATCTG+TGG 0.539326 3.4:-2233341 MS.gene51471:CDS
TACCTGTCGTTAGGTCTATG+AGG 0.541014 3.4:+2238003 None:intergenic
AAGCCACGGATAATTACTAC+AGG 0.543566 3.4:+2233316 None:intergenic
ACAGGCATCAAAACTGGAGG+AGG 0.544938 3.4:+2232112 None:intergenic
CCGTCGGGGATCAGGTCTAA+AGG 0.547560 3.4:+2231840 None:intergenic
GAACGCATCGTCATTCCTGA+TGG 0.548956 3.4:+2231910 None:intergenic
CGGTCACGATAGTTAGGGCT+AGG 0.549799 3.4:+2238096 None:intergenic
GACCTGATCCCCGACGGATG+CGG 0.552652 3.4:-2231834 MS.gene51471:CDS
ACATCTATTAAGGGCTTAGA+GGG 0.553584 3.4:-2233292 MS.gene51471:CDS
GTTTCCCAACTGCCTCTCAT+GGG 0.553750 3.4:+2232198 None:intergenic
TTTCAATACCCACAAGGATG+CGG 0.555795 3.4:-2234167 MS.gene51471:CDS
CTAGATCTCTTATACGGCGG+AGG 0.558280 3.4:+2238036 None:intergenic
CCTCACCGTGGCGGCCGAGG+TGG 0.560575 3.4:-2238177 MS.gene51471:CDS
CCTGATGGATCATACGAAGA+TGG 0.561638 3.4:+2231925 None:intergenic
TTATACCTATTCAGGCCTCT+GGG 0.561914 3.4:-2232003 MS.gene51471:intron
AGAGCAACCAACCCGGCACC+AGG 0.562907 3.4:+2232088 None:intergenic
AGGACAAGCCTTTAAAGCGA+AGG 0.563691 3.4:-2232315 MS.gene51471:CDS
GCCATCCCATGAGAGGCAGT+TGG 0.567581 3.4:-2232203 MS.gene51471:CDS
TTCTGGTGGAGCAGGAACAA+AGG 0.568203 3.4:+2231978 None:intergenic
GTAAAAGAAGAAGACATGGC+AGG 0.568918 3.4:-2233540 MS.gene51471:CDS
CATACCACTCCGCATCCTTG+TGG 0.569979 3.4:+2234158 None:intergenic
ATTTACTTACAGTAATTGAA+AGG 0.571034 3.4:-2233972 MS.gene51471:intron
CGATGTGGAAATCTGCCACC+AGG 0.571313 3.4:+2236699 None:intergenic
CTTCTAGATCTCTTATACGG+CGG 0.571503 3.4:+2238033 None:intergenic
TTATGCAGATTTGCCAAGTG+GGG 0.573070 3.4:-2235302 MS.gene51471:CDS
GTCCTATAAGCAATTCATCC+AGG 0.574466 3.4:-2234382 MS.gene51471:CDS
TGCTGCAGCAGCTGACATGT+TGG 0.575171 3.4:-2233032 MS.gene51471:CDS
GCCGTATAAGAGATCTAGAA+GGG 0.575206 3.4:-2238031 MS.gene51471:CDS
GACAGTAACTTCTTCTTCTG+GGG 0.578270 3.4:+2230916 None:intergenic
ATAAGTACCTCCGCATCCGT+CGG 0.578460 3.4:+2231824 None:intergenic
GGAATCGGCGAGACCAGGAT+AGG 0.578499 3.4:-2232261 MS.gene51471:CDS
AGCCAGTGAGCCCAATTCAG+AGG 0.578683 3.4:-2233581 MS.gene51471:CDS
CATCGAACATTGTTTCATCA+CGG 0.580490 3.4:+2232176 None:intergenic
TAAAAGAAGAAGACATGGCA+GGG 0.583889 3.4:-2233539 MS.gene51471:CDS
GAACGACGAGACTGCTGCGG+AGG 0.585310 3.4:+2238060 None:intergenic
AAGTTACTGTCATAGACTAT+CGG 0.585625 3.4:-2230904 MS.gene51471:CDS
GCCGATTGAAAGATGATCGT+GGG 0.585756 3.4:-2232282 MS.gene51471:CDS
AGCGGCGGTCACGATAGTTA+GGG 0.586078 3.4:+2238091 None:intergenic
ATGTGAGACCAGAAGGAGCA+AGG 0.587740 3.4:-2233171 MS.gene51471:CDS
GTCAGGAGGAGGTGGAGCGG+TGG 0.588117 3.4:+2238281 None:intergenic
TCTGAGTTGAATGATACAGC+AGG 0.589557 3.4:+2232142 None:intergenic
CCACCTCGGCCGCCACGGTG+AGG 0.591302 3.4:+2238177 None:intergenic
AAGGCTCGCAGTGGATCTGT+GGG 0.592274 3.4:-2233340 MS.gene51471:CDS
AAATGCTCGACGTTTGGCAA+AGG 0.592998 3.4:-2233791 MS.gene51471:CDS
TTTCCACATCGATCTGGAGG+GGG 0.594827 3.4:-2236687 MS.gene51471:CDS
TACCTACGCTCAGCTTCAGA+TGG 0.594958 3.4:+2234339 None:intergenic
CGGGGATCAGGTCTAAAGGT+GGG 0.597507 3.4:+2231844 None:intergenic
TATGCAGATTTGCCAAGTGG+GGG 0.600967 3.4:-2235301 MS.gene51471:CDS
TTAGTTCCAACACAAGCTCT+GGG 0.603595 3.4:+2232888 None:intergenic
AGATTTCCACATCGATCTGG+AGG 0.603786 3.4:-2236690 MS.gene51471:CDS
GGTGGGAGATCGTCGTCAGG+AGG 0.604290 3.4:+2238267 None:intergenic
CGACGAGGGTTGGGGTTAGG+TGG 0.605859 3.4:+2238243 None:intergenic
TCGGGGATCAGGTCTAAAGG+TGG 0.610998 3.4:+2231843 None:intergenic
TGGAACTAACATCAAAATTG+CGG 0.612164 3.4:-2232874 MS.gene51471:CDS
GGCCGCCACGGTGAGGACGG+CGG 0.613259 3.4:+2238184 None:intergenic
GGCGTTTGATGTCTCTATCA+CGG 0.614422 3.4:+2238127 None:intergenic
CTGATCCCCGACGGATGCGG+AGG 0.614753 3.4:-2231831 MS.gene51471:intron
CAGGCATCAAAACTGGAGGA+GGG 0.615388 3.4:+2232113 None:intergenic
GTCCTCATAGACCTAACGAC+AGG 0.615608 3.4:-2238005 MS.gene51471:intron
GGTTATGCAGATTTGCCAAG+TGG 0.618297 3.4:-2235304 MS.gene51471:CDS
ATTTCCACATCGATCTGGAG+GGG 0.621278 3.4:-2236688 MS.gene51471:CDS
GTCGTCAGGAGGAGGTGGAG+CGG 0.622070 3.4:+2238278 None:intergenic
ACAGTTCGCCATCCCATGAG+AGG 0.622464 3.4:-2232210 MS.gene51471:CDS
TCAGAGGAGGAAACAGATGC+CGG 0.623419 3.4:-2233565 MS.gene51471:CDS
TTTGGCCATGATCACTTCGG+TGG 0.625230 3.4:-2236765 MS.gene51471:CDS
GTGGTGCAGTTATCAAGACT+TGG 0.626723 3.4:-2230942 MS.gene51471:intron
AAAACACCCAGAGCTTGTGT+TGG 0.626883 3.4:-2232894 MS.gene51471:CDS
AGTGATCCTGATGCTCCTGG+TGG 0.627928 3.4:-2232726 MS.gene51471:CDS
GGAGAACGACGAGACTGCTG+CGG 0.631420 3.4:+2238057 None:intergenic
CCTTTAGACCTGATCCCCGA+CGG 0.633767 3.4:-2231840 MS.gene51471:CDS
GATTTCCACATCGATCTGGA+GGG 0.634289 3.4:-2236689 MS.gene51471:CDS
CACTTCGGTGGCTATGAACG+GGG 0.634430 3.4:-2236753 MS.gene51471:CDS
AGGTTTGGCCATGATCACTT+CGG 0.635013 3.4:-2236768 MS.gene51471:CDS
AAGTACCTCCGCATCCGTCG+GGG 0.635573 3.4:+2231826 None:intergenic
GACCGCCGTCCTCACCGTGG+CGG 0.636148 3.4:-2238186 MS.gene51471:CDS
GGCCGATTGAAAGATGATCG+TGG 0.636197 3.4:-2232283 MS.gene51471:CDS
TATGGTTGGAAGTATGGCTG+TGG 0.637523 3.4:-2232977 MS.gene51471:CDS
TTAAAGCGAAGGTTACTGGA+AGG 0.638659 3.4:-2232304 MS.gene51471:CDS
GGTCGTGAGATTCGAGAGGG+AGG 0.640564 3.4:+2238316 None:intergenic
CCTTAATAGATGTTAAGCCA+CGG 0.640737 3.4:+2233302 None:intergenic
CAGTGAGCCCAATTCAGAGG+AGG 0.641145 3.4:-2233578 MS.gene51471:CDS
CGTTCTGGTCCTCACATAGG+GGG 0.645123 3.4:-2231892 MS.gene51471:CDS
GCGTTCTGGTCCTCACATAG+GGG 0.645525 3.4:-2231893 MS.gene51471:CDS
CTTGAGACTAGTGATGCCAA+AGG 0.645562 3.4:-2233202 MS.gene51471:CDS
GCAGATCTGGATGCCAATCG+CGG 0.645963 3.4:-2235325 MS.gene51471:intron
CTTGGAAGTAAGGACTGCAA+AGG 0.649139 3.4:-2233065 MS.gene51471:CDS
TGTTGTTCGTAAGCTTGACA+AGG 0.650753 3.4:-2233419 MS.gene51471:CDS
CGGTCAAAATCGCGACGACG+AGG 0.651901 3.4:+2238228 None:intergenic
GGGAGGAACAGCAATCATAG+AGG 0.652456 3.4:+2231864 None:intergenic
TTCTAGGTTCAGAACTGACA+GGG 0.653359 3.4:+2233473 None:intergenic
GGCTATGCAGATGATAGACC+TGG 0.653573 3.4:-2236717 MS.gene51471:CDS
GGTCAAAATCGCGACGACGA+GGG 0.656572 3.4:+2238229 None:intergenic
AGGCATCAAAACTGGAGGAG+GGG 0.658058 3.4:+2232114 None:intergenic
AATAGTGATAAGGCTCGCAG+TGG 0.662545 3.4:-2233349 MS.gene51471:CDS
AGCTTATTTCAATACCCACA+AGG 0.664399 3.4:-2234173 MS.gene51471:CDS
ATCGGTCGTGAGATTCGAGA+GGG 0.664847 3.4:+2238313 None:intergenic
GGCCCTGTAGTAATTATCCG+TGG 0.666056 3.4:-2233319 MS.gene51471:CDS
GCTGCGGAGGAGGAGAATAG+CGG 0.667835 3.4:+2238073 None:intergenic
TGCCATCTGAAGCTGAGCGT+AGG 0.669466 3.4:-2234341 MS.gene51471:intron
AAAAGAAGAAGACATGGCAG+GGG 0.670768 3.4:-2233538 MS.gene51471:CDS
ACAATGTTCGATGCATATGG+TGG 0.677228 3.4:-2232166 MS.gene51471:CDS
ATGAAGAAACAGCTAAGTCG+GGG 0.681698 3.4:-2233147 MS.gene51471:CDS
GGATCAGGTCTAAAGGTGGG+AGG 0.688645 3.4:+2231847 None:intergenic
GCGGAGGAGGAGAATAGCGG+CGG 0.691138 3.4:+2238076 None:intergenic
TTCGGTGGCTATGAACGGGG+AGG 0.691284 3.4:-2236750 MS.gene51471:CDS
CGAAATCTCTGTCGTCACGA+CGG 0.694181 3.4:+2238208 None:intergenic
GGTGGTAAAAGAAGAAGACA+TGG 0.697775 3.4:-2233544 MS.gene51471:CDS
GATCGGTCGTGAGATTCGAG+AGG 0.698207 3.4:+2238312 None:intergenic
GCAGGAACAAAGGGTCCCAG+AGG 0.699153 3.4:+2231988 None:intergenic
GGTACAGGCATCAAAACTGG+AGG 0.702355 3.4:+2232109 None:intergenic
GAGGAGGAAACAGATGCCGG+TGG 0.705310 3.4:-2233562 MS.gene51471:CDS
TTCGACCGCCGTCCTCACCG+TGG 0.713062 3.4:-2238189 MS.gene51471:CDS
CCGTATAAGAGATCTAGAAG+GGG 0.715875 3.4:-2238030 MS.gene51471:CDS
ATACCCACAAGGATGCGGAG+TGG 0.729545 3.4:-2234162 MS.gene51471:intron
AGCCACGGATAATTACTACA+GGG 0.753218 3.4:+2233317 None:intergenic
TATGCAGATGATAGACCTGG+TGG 0.763982 3.4:-2236714 MS.gene51471:CDS
TGTAGTAACCACCTCCACCG+CGG 0.784401 3.4:+2238154 None:intergenic
AGTTAGGGCTAGGACTACGA+CGG 0.787338 3.4:+2238106 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr3.4 gene 2230895 2238355 2230895 ID=MS.gene51471
chr3.4 mRNA 2230895 2238355 2230895 ID=MS.gene51471.t1;Parent=MS.gene51471
chr3.4 exon 2238006 2238355 2238006 ID=MS.gene51471.t1.exon1;Parent=MS.gene51471.t1
chr3.4 CDS 2238006 2238355 2238006 ID=cds.MS.gene51471.t1;Parent=MS.gene51471.t1
chr3.4 exon 2236667 2236788 2236667 ID=MS.gene51471.t1.exon2;Parent=MS.gene51471.t1
chr3.4 CDS 2236667 2236788 2236667 ID=cds.MS.gene51471.t1;Parent=MS.gene51471.t1
chr3.4 exon 2235292 2235343 2235292 ID=MS.gene51471.t1.exon3;Parent=MS.gene51471.t1
chr3.4 CDS 2235292 2235343 2235292 ID=cds.MS.gene51471.t1;Parent=MS.gene51471.t1
chr3.4 exon 2234342 2234416 2234342 ID=MS.gene51471.t1.exon4;Parent=MS.gene51471.t1
chr3.4 CDS 2234342 2234416 2234342 ID=cds.MS.gene51471.t1;Parent=MS.gene51471.t1
chr3.4 exon 2234163 2234237 2234163 ID=MS.gene51471.t1.exon5;Parent=MS.gene51471.t1
chr3.4 CDS 2234163 2234237 2234163 ID=cds.MS.gene51471.t1;Parent=MS.gene51471.t1
chr3.4 exon 2233973 2234020 2233973 ID=MS.gene51471.t1.exon6;Parent=MS.gene51471.t1
chr3.4 CDS 2233973 2234020 2233973 ID=cds.MS.gene51471.t1;Parent=MS.gene51471.t1
chr3.4 exon 2233754 2233822 2233754 ID=MS.gene51471.t1.exon7;Parent=MS.gene51471.t1
chr3.4 CDS 2233754 2233822 2233754 ID=cds.MS.gene51471.t1;Parent=MS.gene51471.t1
chr3.4 exon 2232845 2233642 2232845 ID=MS.gene51471.t1.exon8;Parent=MS.gene51471.t1
chr3.4 CDS 2232845 2233642 2232845 ID=cds.MS.gene51471.t1;Parent=MS.gene51471.t1
chr3.4 exon 2232701 2232746 2232701 ID=MS.gene51471.t1.exon9;Parent=MS.gene51471.t1
chr3.4 CDS 2232701 2232746 2232701 ID=cds.MS.gene51471.t1;Parent=MS.gene51471.t1
chr3.4 exon 2232100 2232335 2232100 ID=MS.gene51471.t1.exon10;Parent=MS.gene51471.t1
chr3.4 CDS 2232100 2232335 2232100 ID=cds.MS.gene51471.t1;Parent=MS.gene51471.t1
chr3.4 exon 2231832 2232011 2231832 ID=MS.gene51471.t1.exon11;Parent=MS.gene51471.t1
chr3.4 CDS 2231832 2232011 2231832 ID=cds.MS.gene51471.t1;Parent=MS.gene51471.t1
chr3.4 exon 2230895 2230955 2230895 ID=MS.gene51471.t1.exon12;Parent=MS.gene51471.t1
chr3.4 CDS 2230895 2230955 2230895 ID=cds.MS.gene51471.t1;Parent=MS.gene51471.t1
Gene Sequence

>MS.gene51471

ATGGCCGAAGTCGAAAACCTCCCTCTCGAATCTCACGACCGATCTCCAACCACCACCGCTCCACCTCCTCCTGACGACGATCTCCCACCTCCACCTAACCCCAACCCTCGTCGTCGCGATTTTGACCGTCGTGACGACAGAGATTTCGACCGCCGTCCTCACCGTGGCGGCCGAGGTGGCCGCGGTGGAGGTGGTTACTACAATAACCGTGATAGAGACATCAAACGCCGTCGTAGTCCTAGCCCTAACTATCGTGACCGCCGCTATTCTCCTCCTCCGCAGCAGTCTCGTCGTTCTCCTCCGCCGTATAAGAGATCTAGAAGGGGTAGTCCTCATAGACCTAACGACAGGTAATTGCATAATTGAATTAATCGTTTATTAATTGAGGTTTTTATGAGTAATTGATAGCATTTAATTTAGGGTTAGGTTTTATTTATACGAACTGTAGAATAGGGTTAGTTGTTTTAATTTTGAATTTTGTGCAAGAAATTTTAGATTGCGGTAGTAATTATAAGCTTATACAAATATTTATTGTGCAAGAAATTTTAGATTGCGGTAGTAATTATAAGCTTATACAAGTATTTATGATGAAGTTAAACTTCAGAGCTCGTAAAAATCGAAGATGCAAAAGTTAAATATGAAATTTTTATTTTTATTTTTTGTTAAGATTCAGTTTTTTTTCTTCTTCTTTTGAATAATTGTTTATTGGGATGTTTATCTAATGAAAAGCCATTGTTTATAGTCATAAGGCCTGTTTGGATTGACTTATTTGAATTTATCTACTGGAATAAGTTTTGTGATGATGTTTGGGAGAACTATGAAAGTAGTAGCTATTGACAATTTTCAGCCTAATCTCATAAATTCTCCAAGATAAAACTTATTTGAAATTAAGCTTTTTGCAGCTTAATTTCACAAGTTCTCCAAGATAGCATATGAAAACAACTTATAGCATATTCAAAAACAATTTAACTTTATTTTGTCTTTTCCAATAGAAATGGCTTATGTAAGCTTATGCATAAGTGCTTGTGCTAAAAGCTGCAGATAAGTTGTTTATCCAAACAGGGGCAGAAGTTATATTCAACATGTTTAAATGAAATTGTGTGCCTATGGACTTTTATGGTTTCTGATGTCTTACAAATCGTACCAATTGTAACTGACTACTTTATAATGAAAGGTTATATGTTGAGAGTCATCAGTCATGTACTTAATTTTTCATGGGATTTGTTTGAAGGATTTTATTCTTGTTTGTTGTATAATGTAGAAGGATTTAACTTGTATACACTGTTAGTGTAAAGATGTTTTACACTGTTACTCAATCTTATCTGGCGGATCATTAAAAACATTGGACTTTATTCATAACTATTTTTAAAGTCATGTATTTGATTGGTTGTTGGTTGTGATTTGCTGACAGAGTATACAAATTACACTCATATAAAAATCTATTTAGATTATAGAGTATGTATACTTTCCTGTATTATTTGTTTTCTTTGCATCCATTTACCCTATGCATCAGAAACTATGTTAATATATTCCCTCCTCCAATTGCTTTGTTATGTGCGTAAAACAGGTTTGGCCATGATCACTTCGGTGGCTATGAACGGGGAGGTGGAAGGGGTGGCTATGCAGATGATAGACCTGGTGGCAGATTTCCACATCGATCTGGAGGGGGATATCAAAACGGAATTTCTGGTATGTCAATAGTTGCAAATAATTTTCAAATATAGTTATTCTAAAATACCTATAAATGCAATTTTTTTTTAGCTTTAGTTTCTGACTTTTTCGTTTGATTGAACTTATTAAACTCAGCGATACCCATCATTGTTTACTGATACATATGTATGCATAGAAGTGTAGTTTCTTTTGTTTTTTATGTTAGGATTTCAGTGTTGCATTTGTTACTTACTGGTGATTTTTAAAATGGTGTTATTACTTGGTGCAAACTTTTTTATCTGTTTGAGTGATCTTAATATTTTTTCAAATATTAAGAAATTGTACAGAAAATGTCTGGGAATTATTCCATTTACAACCAAGATTTGCTCTTGCTCCCTAAGCAAGTGTTAGTTAGTGGGTATAGGTTGATATTTCAGTATCCCTAATCTGAGTTGCTGCACACTTTTGTAACCCAATCAAATGTGATTGTTGTTTTGGAGACTATTCTTTCAGCACTAGTAGCATGTAAATTAACATGATTAGTCCAGATGTGTGAAACATACTGTCTAAAAGATATTTTTCATTATCACATATATTATTATCATAATCCCATAATTCAGCATGTATTTTATGATTCTCTTTAGTCTATTCAGTGTTTTTGGGTTTGGCTACTTGAGGTAGCGATTTGAGATTGGTCACTATGCTCCGGTGTCATTTTTAGTTCTTTCATGCATCGTGTTTAATAAAATACTTCTGTAGTAAAAGGTTACTTCTTCAGACGGTGCATAGAAAATATTAGTATATCATTATGAGTTATAAATTACTCGATCTCTTTTTTTTTTTTGTATATCCTCTATTGATTTTTTTATTTTATTTTATTCTTTTCTCCTGATGGAAGTCAAATTATTTCCATTCTTGTCATTCAAAACTGAGCATCAAATCAATTTTTCGCACTGTAATATTGAGACATTCAATGGCAAGCATGCTGCTTTTCAGCAGTCATAAAAAAGAAAATAAATATCAGATTGAAAAGATTGTCCTTGTTTGCTGTTCAGTGGTTTAAGTGGGTATGGTTTCTCTCACGTCCCCTGCATGGCATTCTTAAACCAATACTGTTTTTTTTATTCTCTCCCCACCTCTTAATGGAGGGGTGTGTTTGTGTCCCCCTGGCTGTTGTTTGGTATTTATATTTCAAGCTTACCGTTATCTAGTTCTAAATCTTGATCAATTAATTGGGAAAGGTTTGTTATAAAATAACTCTTACTACGAGCTATCAAATATGTATAAATTTCCTTTTAGGGTGACGTAAATTATTTTTAATATGTTTTTTATGTTATGGGTTTTATGGGTTTTATTTTGCAGATCTGGATGCCAATCGCGGTTATGCAGATTTGCCAAGTGGGGGTGCTCGAAGGTCAGTTTTGTACTTGACAATTTAAACTATGAATAACTTATATTGCCTGCCTGTATCATGTATTTCTTTGAAAACAGACAACTAATCTCATCAATGAAGGTTATTGACAAACGAAATATGGCAAACATGCCAATATACTAAGAGTGCAAGATCTGTAACATGAGATCTACAGATTTATTGTTAAGAAATTTTCAAATATTCTTAGATGGTAATGTTCCAATATCTTGAATGGGTGGCTTGATTTGAAGATACACCTTGTTATAGTGATTATACAAGGTCAGTACCAGATCTCTGTTGAGTGCTACTATTTGTTGAACCGCTTTGAGATGAGATTATGGATGTTCTTGGAGGAATTTGACGTGCGGGGGTGTGATGTGAACACCCCAATTCTCCTATGGCGATAAATAGGCATATGGAATTCAGATCCAAACAAATGCTCTCTGCAGGGAACAAAATATTAAAATATTATAGGACAGTTGTTGTTAAGAAGACTGAGGGGCTGTTTGAAAGCGGTGGTAAAGATTCGAAATGCTCTCCCCATTTTGTCAATTTGCCACTTCTTTCAAACAATCCCAAAGTCTTCTTTGGCAGCTGGGGGGCCTGGGGCTTTATCACATTATCTGTTTACTTTGAGGAAGATTGGTTTCAGGCTCTATGGAGGAGGTTTCTCTTTTGTTTTTCATTTGGCTACTTCATTTGACATGTATTAAAAGCATTAACCTAGATGAATGATAGTCAAATGGTTAGAGATAGAGGGAGGCCACAGAAATCCTGATTTGTGGGATGATGGTTGCTTTTATTTTACTGTATTGAACTTAGCAATGTGATATTTTGGGGAAAGTCTGTTCACTTGAAGAGCTTGTGAATTATTTCAGAGAGGGGTTGATGTCCTATAAGCAATTCATCCAGGAGCTTGAAGATGATATACTGCCATCTGAAGCTGAGCGTAGGTAAGTTTAAAAAAATAACATCCTTTTACGTTTTTTCTTAGCTCTTAGTACTAAAGAATTTGTGATATGCCATTGATGAATGATGTTGCAATTTGTTTTTCTAGATACCAAGAGTACAAGTCAGAGTATATTACTACCCAAAAACGAGCTTATTTCAATACCCACAAGGATGCGGAGTGGTATGTTTTTTTTCCCACTGCTGAAATTTCAATTGACTCTTGAAATATTCTCTTTTGTAGAGTATAAATTAGCATCTTGTTTCACGTTGAAGCAATCTTGTGTTCATTCCGTTAATTGATTTTGATCTAAACTTTGATGTAGGTTGAAAGATAAGTATCATCCAACAAATTTACTTACAGTAATTGAAAGGTGAGTTTTTTCAAAACTTGCAGTTTATTGAAGAGCTGAACGCAGCTCCCTCTTTACGTTGATGAATGGTAGAGAAATAGTCAGGAAGACTAATATTTTGATTAAAGATGTCTAATTATATTCAATCCTATCTGGCACATAATCTTTTAGGAGGAATGAAAATGCTCGACGTTTGGCAAAGGAGTTTTTGCTTGATTTGCAAAGTGGAGCACTAGACATGTATGTTTTTGTCCTCTCTCACTTTATGTGTGTTTATTATGCCTTCTCTTCCTCCTCACGCTTGCCTAAATTCATTGAATTATGAGAGTAATTTAATTATGATTTGTGCAGAAATCCAGGTTTAAACTCTGCATCCACTAAATCAGAGCAAGCCAGTGAGCCCAATTCAGAGGAGGAAACAGATGCCGGTGGTAAAAGAAGAAGACATGGCAGGGGATCTAATAAGGACAACGATTTCTCTGCTGCTCCGAAGGCTCACCCTGTCAGTTCTGAACCTAGAAGGATACAAGAAGATATTCATCAGGTTCAGGCTGTTGTTCGTAAGCTTGACAAGGAAAAAGGGATTGAAGATAATATTTTATGCACCAATGATCATAGTAAAAATAGTGATAAGGCTCGCAGTGGATCTGTGGGCCCTGTAGTAATTATCCGTGGCTTAACATCTATTAAGGGCTTAGAGGGTGTTGAGCTACTGGACACACTTATAACATATCTTTGGCGGATTCATGGTGTAGATTATTATGGAATGCTTGAGACTAGTGATGCCAAAGGTTTTAGGCATGTGAGACCAGAAGGAGCAAGGCATGAAGAAACAGCTAAGTCGGGGTCAGAATGGGAGAAAAAACTTGATTCATTTTGGCAGAGAAGGTTGGACAGCCTGGATCCCTTGGAAGTAAGGACTGCAAAGGAGAAGATAGATGCTGCAGCAGCTGACATGTTGGATCCATATGTTAGAAAAATTAGGGATGAAAAGTATGGTTGGAAGTATGGCTGTGGAGCCAAGAGTTGCACAAAGCTTTTTCATGCTGTTGAGTTTGTGTACAAACATCTCAAGCTAAAACACCCAGAGCTTGTGTTGGAACTAACATCAAAATTGCGGGAAGATCTTTATTTTCAAAATTACATGAAGTAAGTATCAATTAACTGAGCTTTTTATTTTTGTTTAGTGGTTAATCTTGCAAGTGGTGGTGGAAATATTAAATATATTGATGTTACCTTCATTGTAGTGATCCTGATGCTCCTGGTGGAACGCCTGTCATGCAGCAATCTCAGGTAGAATGGCAATTTTATTTACCATACAATTTTATATCTAGAAGAAAATTATTACAAATGATGATTCTTGACTTGCTAAAACCGTGATCACATGTTTTGAAAACATTTTGGTCTCTTGTCTACCTTAATATATAGGATTTTACAAGCAACTTTGCAGATGTGGTCTGCACATCTTGTGCAATTAGCAATTTTTTGATTAAAACTTTCCTTGAAATATATGCTGCTATCTATGGGGCAAGAAGCATGATGTTTCATTTCACAATTGGGAAATTTATTAAGCTTTCCAATATATTTCTGCACAAAGTCATTATGGTTTGATTCTAAAACATCCATTCTCCATTTTCTTTCTTCCCTCTCTATTTAAGGACAAGCCTTTAAAGCGAAGGTTACTGGAAGGCCGATTGAAAGATGATCGTGGGAATCGGCGAGACCAGGATAGGAGCGACAGAACAAATGGAGATAGACCTGACAGTTCGCCATCCCATGAGAGGCAGTTGGGAAACCGTGATGAAACAATGTTCGATGCATATGGTGGACCTGCTGTATCATTCAACTCAGATATGCCCCCTCCTCCAGTTTTGATGCCTGTACCTGGTGCCGGGTTGGTTGCTCTTTTACTTCTCTTCAATCTATACAATTAAAAGCTTTATTGAGGTTTGCTGGTGCTTATATAATTTATACCTATTCAGGCCTCTGGGACCCTTTGTTCCTGCTCCACCAGAAGTTGCGATGCAGATGTTTAGGGATCAAGGACCATCTTCGTATGATCCATCAGGAATGACGATGCGTTCTGGTCCTCACATAGGGGGACAAGCCTCTATGATTGCTGTTCCTCCCACCTTTAGACCTGATCCCCGACGGATGCGGAGGTACTTATTCTGCTAGACCCTTGTTTATATATGTTCCCTTTTGGTATCTCCAAATCATACTATTTTTTATGTGCCCTTATATATGTGATTTTTAGAGCTTAATCTGCTTTGCAACATGTTATTTTATTGTACTCCCTCCGGTCCTTTATATAAGAAACAAAAGACATAAAACATCAAGACCAAGGAAGTACATTGAAAATAGTCATCTTTATTTAATACACCTCTACATTTAAAAAAATTCCATGAATACCCCTAAATTAATTACTCTTTATTCCACCAACTTATTTACTTTTAATATTCTCTCTCATAATAAATAAGGGCAAAAATAAAATTTAACTTCAAACATCCTTGAAACTTGGTCAATGTTTCTTATATAAAGGACCAAAAAAATTCTCACTTTTGTTTCTAGTAAAAAGGACCGAAGGTAGTATTTTAACTGGCCTCAGAATGCTTAGTGCATGCATGATGCTTTTTTCCAGTTCCATAAAGTTGATTGACATTTTGGGTGCTCTCCAGTAGAATTGGTTTTGGTTTTGGAACTGTTCTAACTTGGGAGAGATATTTCTAGCCTTTGCCTATACGCATAATCTTTTACTCAAATTTATTTTGATCTCACTTTTACGTGAATTAATTCAAACAAAAATTACTTAATATGCAGCTTACTTTAATCAACAAAATCAATTTTATAAAACACATGTGGATTATTAAAATAACATGAGGTGGGAGTATTTCTATTTTCTACTGTGGAAATGAAGACGTTAGTGTGTCTTCGATACTCAAAAGTTATCCATCCATTATCTAACATATTGAGTTGTTTGTTGTATGTGATTGACTGTTTAGTGGAATGTTTAAACTAATTTCCTAATCGTGGTGCAGTTATCAAGACTTGGATGCCCCAGAAGAAGAAGTTACTGTCATAGACTATCGGAGCTTGTAG
Protein sequence

>MS.gene51471.t1

MAEVENLPLESHDRSPTTTAPPPPDDDLPPPPNPNPRRRDFDRRDDRDFDRRPHRGGRGGRGGGGYYNNRDRDIKRRRSPSPNYRDRRYSPPPQQSRRSPPPYKRSRRGSPHRPNDRFGHDHFGGYERGGGRGGYADDRPGGRFPHRSGGGYQNGISDLDANRGYADLPSGGARREGLMSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAYFNTHKDAEWLKDKYHPTNLLTVIERRNENARRLAKEFLLDLQSGALDINPGLNSASTKSEQASEPNSEEETDAGGKRRRHGRGSNKDNDFSAAPKAHPVSSEPRRIQEDIHQVQAVVRKLDKEKGIEDNILCTNDHSKNSDKARSGSVGPVVIIRGLTSIKGLEGVELLDTLITYLWRIHGVDYYGMLETSDAKGFRHVRPEGARHEETAKSGSEWEKKLDSFWQRRLDSLDPLEVRTAKEKIDAAAADMLDPYVRKIRDEKYGWKYGCGAKSCTKLFHAVEFVYKHLKLKHPELVLELTSKLREDLYFQNYMNDPDAPGGTPVMQQSQDKPLKRRLLEGRLKDDRGNRRDQDRSDRTNGDRPDSSPSHERQLGNRDETMFDAYGGPAVSFNSDMPPPPVLMPVPGAGPLGPFVPAPPEVAMQMFRDQGPSSYDPSGMTMRSGPHIGGQASMIAVPPTFRPDPRRMRSYQDLDAPEEEVTVIDYRSL