Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51520.t1 | RHN65308.1 | 73.9 | 421 | 87 | 2 | 1 | 420 | 1 | 399 | 1.70E-93 | 353.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51520.t1 | A0A396IKN8 | 73.9 | 421 | 87 | 2 | 1 | 420 | 1 | 399 | 1.2e-93 | 353.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049698 | MS.gene51520 | 0.807588 | 4.70E-50 | -1.69E-46 |
| MS.gene058909 | MS.gene51520 | 0.829436 | 5.15E-55 | -1.69E-46 |
| MS.gene058912 | MS.gene51520 | 0.825791 | 3.87E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51520.t1 | MTR_3g007480 | 82.543 | 464 | 37 | 3 | 1 | 420 | 1 | 464 | 0.0 | 717 |
| MS.gene51520.t1 | MTR_8g046245 | 27.907 | 430 | 246 | 18 | 9 | 416 | 24 | 411 | 8.83e-16 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAACTGGTTCTTCTTC+TGG | 0.192285 | 3.4:+3092851 | None:intergenic |
| GGGACACTACCTGGAATATT+TGG | 0.193957 | 3.4:+3092878 | None:intergenic |
| TGTGATATTGGCAATATTAA+AGG | 0.196479 | 3.4:-3092935 | MS.gene51520:CDS |
| AACTGGTTCTTCTTCTGGTT+GGG | 0.200791 | 3.4:+3092856 | None:intergenic |
| TTACTTTCAACATTTGATTT+AGG | 0.203987 | 3.4:+3092764 | None:intergenic |
| GCTAAAGTTGAGTATGATTT+TGG | 0.225786 | 3.4:-3093040 | MS.gene51520:CDS |
| GTTCCATCACATTGTGATAT+TGG | 0.249319 | 3.4:-3092947 | MS.gene51520:CDS |
| ACTGAACCTCTTTGCATAAC+TGG | 0.257207 | 3.4:+3092025 | None:intergenic |
| GATCAGCTGGATCAAATAAA+AGG | 0.294691 | 3.4:-3092994 | MS.gene51520:CDS |
| AGATCCTTTGCTTTCGTCCT+TGG | 0.309842 | 3.4:+3092202 | None:intergenic |
| AAAAGAGTCTTTACCTCAAA+AGG | 0.312680 | 3.4:-3092534 | MS.gene51520:CDS |
| GAAATGATCAATGATAAATT+TGG | 0.327006 | 3.4:-3092128 | MS.gene51520:CDS |
| AAGTGTAAAAGATGAGAATA+AGG | 0.339593 | 3.4:-3092333 | MS.gene51520:CDS |
| CAACTGGTTCTTCTTCTGGT+TGG | 0.345411 | 3.4:+3092855 | None:intergenic |
| AAAAGAGTCTTTACCTCAAA+AGG | 0.355490 | 3.4:-3092576 | MS.gene51520:CDS |
| ACTGGTTCTTCTTCTGGTTG+GGG | 0.391074 | 3.4:+3092857 | None:intergenic |
| CTGATTGTTCAAATTCCTGA+TGG | 0.416874 | 3.4:-3093734 | MS.gene51520:intron |
| ACGCGAAGAACGATACTTGT+AGG | 0.421266 | 3.4:+3091932 | None:intergenic |
| ACAAGAGTCTTTACCTCAAA+AGG | 0.426442 | 3.4:-3092618 | MS.gene51520:CDS |
| ACAATCAGAAGGTGTGAGTC+TGG | 0.429448 | 3.4:+3093749 | None:intergenic |
| CTTGATACTTTACATTGAAA+CGG | 0.443963 | 3.4:+3092969 | None:intergenic |
| AGTTGCAAAAGTTGAAAGTA+AGG | 0.451119 | 3.4:-3092483 | MS.gene51520:CDS |
| ATCACAATGCCAAATATTCC+AGG | 0.452545 | 3.4:-3092887 | MS.gene51520:CDS |
| ACATGAGTCTAAGCCTCAAA+AGG | 0.453852 | 3.4:-3092420 | MS.gene51520:CDS |
| AATATTAAAGGTAAGATTGA+TGG | 0.465846 | 3.4:-3092923 | MS.gene51520:CDS |
| CCTCAAAAGGGTCAAGATCA+AGG | 0.469599 | 3.4:-3092407 | MS.gene51520:CDS |
| TGATGAGGTAAATGATCAAA+AGG | 0.479305 | 3.4:-3092813 | MS.gene51520:CDS |
| TGAGAATAAGGAAAAGCAAA+TGG | 0.489525 | 3.4:-3092321 | MS.gene51520:CDS |
| ACAATTCTTGTGGTTGCACT+TGG | 0.497082 | 3.4:-3091966 | MS.gene51520:CDS |
| CTGGTTCTTCTTCTGGTTGG+GGG | 0.510790 | 3.4:+3092858 | None:intergenic |
| GGTTGTAAAAGAAGAAACTA+AGG | 0.515240 | 3.4:-3092300 | MS.gene51520:CDS |
| TCGTTCTTCGCGTAGAGCAT+AGG | 0.518943 | 3.4:-3091922 | None:intergenic |
| ATTCTTCCCCTACACTTGAA+AGG | 0.537484 | 3.4:-3092229 | MS.gene51520:CDS |
| AAAGAGTCTTTACCTCAAAA+GGG | 0.542957 | 3.4:-3092533 | MS.gene51520:CDS |
| AAAGAGTCTTTACCTCAAAA+GGG | 0.558710 | 3.4:-3092575 | MS.gene51520:CDS |
| AATGAAAACATACAAAGAGA+AGG | 0.559419 | 3.4:-3092156 | MS.gene51520:CDS |
| CATGAGTCTAAGCCTCAAAA+GGG | 0.570863 | 3.4:-3092419 | MS.gene51520:CDS |
| ATGAAAACATACAAAGAGAA+GGG | 0.576008 | 3.4:-3092155 | MS.gene51520:CDS |
| TTGAGGTAAAGACTCTTGTG+TGG | 0.578109 | 3.4:+3092622 | None:intergenic |
| CTGTAACCAGTTATGCAAAG+AGG | 0.578436 | 3.4:-3092031 | MS.gene51520:CDS |
| AAATAATAATAAAGCTGATG+AGG | 0.583535 | 3.4:-3092828 | MS.gene51520:CDS |
| TTCGTAGTCATATGATTGCA+AGG | 0.590913 | 3.4:+3093805 | None:intergenic |
| AAAACCAAGGACGAAAGCAA+AGG | 0.593213 | 3.4:-3092206 | MS.gene51520:CDS |
| TTGCCAATATCACAATGTGA+TGG | 0.596036 | 3.4:+3092944 | None:intergenic |
| CAGGAATTTGAACAATCAGA+AGG | 0.596828 | 3.4:+3093738 | None:intergenic |
| GTTGCAAAAGTTGATAGCAA+AGG | 0.598881 | 3.4:-3092680 | MS.gene51520:CDS |
| ACTGGTTACAGCTTGAGTAG+TGG | 0.610976 | 3.4:+3092043 | None:intergenic |
| AACAGTAAAGTCACATGTGG+CGG | 0.614000 | 3.4:-3092255 | MS.gene51520:CDS |
| CACTGGTGCAACAATTCTTG+TGG | 0.614455 | 3.4:-3091976 | MS.gene51520:CDS |
| AAACAAAAGCTAATATACAC+TGG | 0.628935 | 3.4:-3091993 | MS.gene51520:CDS |
| GAGACTTCAACTCAATCAGA+AGG | 0.630544 | 3.4:-3092446 | MS.gene51520:CDS |
| AACATACAAAGAGAAGGGAA+AGG | 0.642709 | 3.4:-3092150 | MS.gene51520:CDS |
| AAAAGATTCTTGATTCAACA+AGG | 0.644606 | 3.4:-3092091 | MS.gene51520:CDS |
| AGAAACAGTAAAGTCACATG+TGG | 0.668295 | 3.4:-3092258 | MS.gene51520:CDS |
| TGGAGGAAAAGTTTCAACTG+TGG | 0.675102 | 3.4:+3092178 | None:intergenic |
| AAGGACAAGAATCAAAGACA+TGG | 0.679753 | 3.4:-3092072 | MS.gene51520:CDS |
| TACACTTGAAAGGAAAACCA+AGG | 0.691297 | 3.4:-3092219 | MS.gene51520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAACTACTATAAA+AGG | + | chr3.4:3092574-3092593 | None:intergenic | 10.0% |
| !! | TTAAATAGTAATATTTAACA+GGG | - | chr3.4:3092604-3092623 | MS.gene51520:CDS | 10.0% |
| !!! | TTGTGTTTATTTATTTTTTT+TGG | - | chr3.4:3092069-3092088 | MS.gene51520:CDS | 10.0% |
| !! | ATTACACAACATATTAAATT+TGG | - | chr3.4:3092260-3092279 | MS.gene51520:CDS | 15.0% |
| !! | CTTAAATAGTAATATTTAAC+AGG | - | chr3.4:3092603-3092622 | MS.gene51520:CDS | 15.0% |
| !!! | TGTGTAATTTAAAGTTAAAT+AGG | + | chr3.4:3092248-3092267 | None:intergenic | 15.0% |
| !!! | TTATTATTATTTTCTTCAAC+TGG | + | chr3.4:3092899-3092918 | None:intergenic | 15.0% |
| !! | AAATAATAATAAAGCTGATG+AGG | - | chr3.4:3092907-3092926 | MS.gene51520:CDS | 20.0% |
| !! | AATATTAAAGGTAAGATTGA+TGG | - | chr3.4:3092812-3092831 | MS.gene51520:CDS | 20.0% |
| !! | ATAAAAATTCTGATAAGCAA+TGG | + | chr3.4:3092212-3092231 | None:intergenic | 20.0% |
| !! | GAAATGATCAATGATAAATT+TGG | - | chr3.4:3093607-3093626 | MS.gene51520:intron | 20.0% |
| !! | TTAAGAACCTTTATAAAGAA+AGG | + | chr3.4:3092131-3092150 | None:intergenic | 20.0% |
| !!! | CTTTTTTCCTTTCTTTATAA+AGG | - | chr3.4:3092121-3092140 | MS.gene51520:CDS | 20.0% |
| !!! | GTATTCTTTTTTTCAATTAC+TGG | + | chr3.4:3091965-3091984 | None:intergenic | 20.0% |
| !!! | TTACTTTCAACATTTGATTT+AGG | + | chr3.4:3092974-3092993 | None:intergenic | 20.0% |
| ! | AAAAGATTCTTGATTCAACA+AGG | - | chr3.4:3093644-3093663 | MS.gene51520:intron | 25.0% |
| ! | AAACAAAAGCTAATATACAC+TGG | - | chr3.4:3093742-3093761 | MS.gene51520:CDS | 25.0% |
| ! | AAGTGTAAAAGATGAGAATA+AGG | - | chr3.4:3093402-3093421 | MS.gene51520:intron | 25.0% |
| ! | AATGAAAACATACAAAGAGA+AGG | - | chr3.4:3093579-3093598 | MS.gene51520:intron | 25.0% |
| ! | ATGAAAACATACAAAGAGAA+GGG | - | chr3.4:3093580-3093599 | MS.gene51520:intron | 25.0% |
| ! | CTTGATACTTTACATTGAAA+CGG | + | chr3.4:3092769-3092788 | None:intergenic | 25.0% |
| ! | GTTAAATAGGTAAAAGTCTT+TGG | + | chr3.4:3092235-3092254 | None:intergenic | 25.0% |
| ! | TGTGATATTGGCAATATTAA+AGG | - | chr3.4:3092800-3092819 | MS.gene51520:CDS | 25.0% |
| !! | TTCTCTTTGTATGTTTTCAT+TGG | + | chr3.4:3093580-3093599 | None:intergenic | 25.0% |
| !!! | CTTTTTGAGAAATTTCTTCT+TGG | + | chr3.4:3093186-3093205 | None:intergenic | 25.0% |
| !!! | TAGTTCGGTTTTTAAAACAT+TGG | + | chr3.4:3092383-3092402 | None:intergenic | 25.0% |
| AAAAGAGTCTTTACCTCAAA+AGG | - | chr3.4:3093159-3093178 | MS.gene51520:intron | 30.0% | |
| AAAGAGTCTTTACCTCAAAA+GGG | - | chr3.4:3093160-3093179 | MS.gene51520:intron | 30.0% | |
| AAATTCTGATAAGCAATGGA+AGG | + | chr3.4:3092208-3092227 | None:intergenic | 30.0% | |
| AATTATTTAATGCACCCTAC+AGG | - | chr3.4:3092650-3092669 | MS.gene51520:CDS | 30.0% | |
| AGTTGCAAAAGTTGAAAGTA+AGG | - | chr3.4:3093252-3093271 | MS.gene51520:intron | 30.0% | |
| CAAGAACATATGAATAGAAG+TGG | + | chr3.4:3092052-3092071 | None:intergenic | 30.0% | |
| GGTTGTAAAAGAAGAAACTA+AGG | - | chr3.4:3093435-3093454 | MS.gene51520:intron | 30.0% | |
| TATAAAAGGCTAACATCTGT+TGG | + | chr3.4:3092560-3092579 | None:intergenic | 30.0% | |
| TGAGAATAAGGAAAAGCAAA+TGG | - | chr3.4:3093414-3093433 | MS.gene51520:intron | 30.0% | |
| TGATGAGGTAAATGATCAAA+AGG | - | chr3.4:3092922-3092941 | MS.gene51520:CDS | 30.0% | |
| ! | AAGTTGAGTATGATTTTGGA+AGG | - | chr3.4:3092699-3092718 | MS.gene51520:CDS | 30.0% |
| ! | ATTTCTTCTTGATCCTTTTG+AGG | + | chr3.4:3093133-3093152 | None:intergenic | 30.0% |
| ! | GCTAAAGTTGAGTATGATTT+TGG | - | chr3.4:3092695-3092714 | MS.gene51520:CDS | 30.0% |
| ! | TCTTTGTATGTTTTCATTGG+AGG | + | chr3.4:3093577-3093596 | None:intergenic | 30.0% |
| !! | AGTTGAGTATGATTTTGGAA+GGG | - | chr3.4:3092700-3092719 | MS.gene51520:CDS | 30.0% |
| !!! | AATTTTTTGAGCATCTTGTG+GGG | + | chr3.4:3093008-3093027 | None:intergenic | 30.0% |
| !!! | GAATTTTTTGAGCATCTTGT+GGG | + | chr3.4:3093009-3093028 | None:intergenic | 30.0% |
| !!! | GGTTTGGTTTTTGAAAACAT+TGG | - | chr3.4:3092528-3092547 | MS.gene51520:CDS | 30.0% |
| !!! | TGAATTTTTTGAGCATCTTG+TGG | + | chr3.4:3093010-3093029 | None:intergenic | 30.0% |
| !!! | TTTGCATCTTTTGTTTCTGT+AGG | + | chr3.4:3093367-3093386 | None:intergenic | 30.0% |
| AACATACAAAGAGAAGGGAA+AGG | - | chr3.4:3093585-3093604 | MS.gene51520:intron | 35.0% | |
| AACCGAACTAGATATCAAAC+CGG | - | chr3.4:3092393-3092412 | MS.gene51520:CDS | 35.0% | |
| AAGGACAAGAATCAAAGACA+TGG | - | chr3.4:3093663-3093682 | MS.gene51520:intron | 35.0% | |
| ACAAGAGTCTTTACCTCAAA+AGG | - | chr3.4:3093117-3093136 | MS.gene51520:intron | 35.0% | |
| AGAAACAGTAAAGTCACATG+TGG | - | chr3.4:3093477-3093496 | MS.gene51520:intron | 35.0% | |
| ATCACAATGCCAAATATTCC+AGG | - | chr3.4:3092848-3092867 | MS.gene51520:CDS | 35.0% | |
| CAGGAATTTGAACAATCAGA+AGG | + | chr3.4:3092000-3092019 | None:intergenic | 35.0% | |
| CTGATTGTTCAAATTCCTGA+TGG | - | chr3.4:3092001-3092020 | MS.gene51520:CDS | 35.0% | |
| GATCAGCTGGATCAAATAAA+AGG | - | chr3.4:3092741-3092760 | MS.gene51520:CDS | 35.0% | |
| GCTCTTGTTCGAATGTTATA+AGG | + | chr3.4:3092450-3092469 | None:intergenic | 35.0% | |
| GTTAAACCAAACAAACCATC+AGG | + | chr3.4:3092019-3092038 | None:intergenic | 35.0% | |
| GTTCCATCACATTGTGATAT+TGG | - | chr3.4:3092788-3092807 | MS.gene51520:CDS | 35.0% | |
| TACACTTGAAAGGAAAACCA+AGG | - | chr3.4:3093516-3093535 | MS.gene51520:intron | 35.0% | |
| TTCGTAGTCATATGATTGCA+AGG | + | chr3.4:3091933-3091952 | None:intergenic | 35.0% | |
| TTGCCAATATCACAATGTGA+TGG | + | chr3.4:3092794-3092813 | None:intergenic | 35.0% | |
| ! | ATTTCTTCTTGACCCTTTTG+AGG | + | chr3.4:3093217-3093236 | None:intergenic | 35.0% |
| ! | TTTTTACTACGGTTGGATTC+TGG | + | chr3.4:3092477-3092496 | None:intergenic | 35.0% |
| !! | CAAATTCCTGATGGTTTGTT+TGG | - | chr3.4:3092010-3092029 | MS.gene51520:CDS | 35.0% |
| !! | GTTGCAAAAGTTGATAGCAA+AGG | - | chr3.4:3093055-3093074 | MS.gene51520:CDS | 35.0% |
| !! | TGGTTTTCCTTTCAAGTGTA+GGG | + | chr3.4:3093516-3093535 | None:intergenic | 35.0% |
| !! | TTGGTTTTCCTTTCAAGTGT+AGG | + | chr3.4:3093517-3093536 | None:intergenic | 35.0% |
| !!! | CCTCGTATTGCTTTTTACTA+CGG | + | chr3.4:3092488-3092507 | None:intergenic | 35.0% |
| !!! | GTATTGCTTTTTACTACGGT+TGG | + | chr3.4:3092484-3092503 | None:intergenic | 35.0% |
| AAAACCAAGGACGAAAGCAA+AGG | - | chr3.4:3093529-3093548 | MS.gene51520:intron | 40.0% | |
| AAAGCAATACGAGGTTCAAC+CGG | - | chr3.4:3092494-3092513 | MS.gene51520:CDS | 40.0% | |
| AACAGTAAAGTCACATGTGG+CGG | - | chr3.4:3093480-3093499 | MS.gene51520:intron | 40.0% | |
| ACAATTCTTGTGGTTGCACT+TGG | - | chr3.4:3093769-3093788 | MS.gene51520:CDS | 40.0% | |
| ACATGAGTCTAAGCCTCAAA+AGG | - | chr3.4:3093315-3093334 | MS.gene51520:intron | 40.0% | |
| ACTGAACCTCTTTGCATAAC+TGG | + | chr3.4:3093713-3093732 | None:intergenic | 40.0% | |
| ATTCTTCCCCTACACTTGAA+AGG | - | chr3.4:3093506-3093525 | MS.gene51520:intron | 40.0% | |
| CATGAGTCTAAGCCTCAAAA+GGG | - | chr3.4:3093316-3093335 | MS.gene51520:intron | 40.0% | |
| CCGTAGTAAAAAGCAATACG+AGG | - | chr3.4:3092485-3092504 | MS.gene51520:CDS | 40.0% | |
| CGTAGAGTTATATGTATCGC+CGG | + | chr3.4:3092415-3092434 | None:intergenic | 40.0% | |
| CTGTAACCAGTTATGCAAAG+AGG | - | chr3.4:3093704-3093723 | MS.gene51520:intron | 40.0% | |
| GAGACTTCAACTCAATCAGA+AGG | - | chr3.4:3093289-3093308 | MS.gene51520:intron | 40.0% | |
| TGGAGGAAAAGTTTCAACTG+TGG | + | chr3.4:3093560-3093579 | None:intergenic | 40.0% | |
| TTGAGGTAAAGACTCTTGTG+TGG | + | chr3.4:3093116-3093135 | None:intergenic | 40.0% | |
| ! | AACTGGTTCTTCTTCTGGTT+GGG | + | chr3.4:3092882-3092901 | None:intergenic | 40.0% |
| ! | ATTTCTTCTTGGCCCTTTTG+AGG | + | chr3.4:3093175-3093194 | None:intergenic | 40.0% |
| ! | TCTTCAACTGGTTCTTCTTC+TGG | + | chr3.4:3092887-3092906 | None:intergenic | 40.0% |
| ! | TTTGGAAGGGTGAGAGTTTT+TGG | - | chr3.4:3092713-3092732 | MS.gene51520:CDS | 40.0% |
| !! | GGTTTTCCTTTCAAGTGTAG+GGG | + | chr3.4:3093515-3093534 | None:intergenic | 40.0% |
| !!! | GTTTTTGGTGAAAGATCAGC+TGG | - | chr3.4:3092728-3092747 | MS.gene51520:CDS | 40.0% |
| ACGCGAAGAACGATACTTGT+AGG | + | chr3.4:3093806-3093825 | None:intergenic | 45.0% | |
| ACTGGTTACAGCTTGAGTAG+TGG | + | chr3.4:3093695-3093714 | None:intergenic | 45.0% | |
| AGATCCTTTGCTTTCGTCCT+TGG | + | chr3.4:3093536-3093555 | None:intergenic | 45.0% | |
| CACTGGTGCAACAATTCTTG+TGG | - | chr3.4:3093759-3093778 | MS.gene51520:CDS | 45.0% | |
| CCTCAAAAGGGTCAAGATCA+AGG | - | chr3.4:3093328-3093347 | MS.gene51520:intron | 45.0% | |
| GGGACACTACCTGGAATATT+TGG | + | chr3.4:3092860-3092879 | None:intergenic | 45.0% | |
| ! | ACAATCAGAAGGTGTGAGTC+TGG | + | chr3.4:3091989-3092008 | None:intergenic | 45.0% |
| ! | ACTGGTTCTTCTTCTGGTTG+GGG | + | chr3.4:3092881-3092900 | None:intergenic | 45.0% |
| ! | CAACTGGTTCTTCTTCTGGT+TGG | + | chr3.4:3092883-3092902 | None:intergenic | 45.0% |
| ! | CCTTGATCTTGACCCTTTTG+AGG | + | chr3.4:3093331-3093350 | None:intergenic | 45.0% |
| !! | CGCCGGTTTGATATCTAGTT+CGG | + | chr3.4:3092398-3092417 | None:intergenic | 45.0% |
| ACCAAACCGAACTGTCCAAC+CGG | + | chr3.4:3092516-3092535 | None:intergenic | 50.0% | |
| CAATACGAGGTTCAACCGGT+TGG | - | chr3.4:3092498-3092517 | MS.gene51520:CDS | 50.0% | |
| GTTCAACCGGTTGGACAGTT+CGG | - | chr3.4:3092507-3092526 | MS.gene51520:CDS | 50.0% | |
| ! | ACCCTACAGGTTTTGCACGA+GGG | - | chr3.4:3092663-3092682 | MS.gene51520:CDS | 50.0% |
| ! | CTGGTTCTTCTTCTGGTTGG+GGG | + | chr3.4:3092880-3092899 | None:intergenic | 50.0% |
| ! | GGTTTTGCACGAGGGGATAT+TGG | - | chr3.4:3092671-3092690 | MS.gene51520:CDS | 50.0% |
| ACCGGTTGGACAGTTCGGTT+TGG | - | chr3.4:3092512-3092531 | MS.gene51520:CDS | 55.0% | |
| CCCCTCGTGCAAAACCTGTA+GGG | + | chr3.4:3092667-3092686 | None:intergenic | 55.0% | |
| TCCCCTCGTGCAAAACCTGT+AGG | + | chr3.4:3092668-3092687 | None:intergenic | 55.0% | |
| ! | CACCCTACAGGTTTTGCACG+AGG | - | chr3.4:3092662-3092681 | MS.gene51520:CDS | 55.0% |
| ! | CCCTACAGGTTTTGCACGAG+GGG | - | chr3.4:3092664-3092683 | MS.gene51520:CDS | 55.0% |
| TCTGGTTGGGGGACACTACC+TGG | + | chr3.4:3092869-3092888 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 3091923 | 3093834 | 3091923 | ID=MS.gene51520 |
| chr3.4 | mRNA | 3091923 | 3093834 | 3091923 | ID=MS.gene51520.t1;Parent=MS.gene51520 |
| chr3.4 | exon | 3093735 | 3093834 | 3093735 | ID=MS.gene51520.t1.exon1;Parent=MS.gene51520.t1 |
| chr3.4 | CDS | 3093735 | 3093834 | 3093735 | ID=cds.MS.gene51520.t1;Parent=MS.gene51520.t1 |
| chr3.4 | exon | 3091923 | 3093085 | 3091923 | ID=MS.gene51520.t1.exon2;Parent=MS.gene51520.t1 |
| chr3.4 | CDS | 3091923 | 3093085 | 3091923 | ID=cds.MS.gene51520.t1;Parent=MS.gene51520.t1 |
| Gene Sequence |
| Protein sequence |
