Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51602.t1 | XP_003623975.1 | 96.4 | 527 | 19 | 0 | 1 | 527 | 1 | 527 | 1.90E-288 | 1001.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51602.t1 | Q6EWX0 | 57.4 | 531 | 215 | 6 | 3 | 532 | 4 | 524 | 1.0e-168 | 594.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51602.t1 | G7L4P5 | 96.4 | 527 | 19 | 0 | 1 | 527 | 1 | 527 | 1.4e-288 | 1001.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51602 | MS.gene35150 | PPI |
| MS.gene51602 | MS.gene072702 | PPI |
| MS.gene51602 | MS.gene61735 | PPI |
| MS.gene51602 | MS.gene061260 | PPI |
| MS.gene22500 | MS.gene51602 | PPI |
| MS.gene51602 | MS.gene023147 | PPI |
| MS.gene51602 | MS.gene041794 | PPI |
| MS.gene51602 | MS.gene61736 | PPI |
| MS.gene51602 | MS.gene028307 | PPI |
| MS.gene51602 | MS.gene07051 | PPI |
| MS.gene51602 | MS.gene36485 | PPI |
| MS.gene51602 | MS.gene28807 | PPI |
| MS.gene51602 | MS.gene041861 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51602.t1 | MTR_7g077840 | 96.964 | 527 | 16 | 0 | 1 | 527 | 1 | 527 | 0.0 | 1049 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51602.t1 | AT4G29910 | 58.365 | 526 | 208 | 6 | 3 | 527 | 4 | 519 | 0.0 | 619 |
| MS.gene51602.t1 | AT4G29910 | 58.004 | 531 | 212 | 6 | 3 | 532 | 34 | 554 | 0.0 | 617 |
Find 103 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTGAACGATGTATTTA+AGG | 0.039494 | 7.2:+28158767 | MS.gene51602:CDS |
| TTACTTCCTTTGTTTGTTTA+TGG | 0.082867 | 7.2:+28157903 | MS.gene51602:CDS |
| ATCTGAAGACTTGGTCTTAA+AGG | 0.176570 | 7.2:+28159632 | MS.gene51602:CDS |
| CTAAAAGGTCATTAATTGTT+AGG | 0.230888 | 7.2:-28157776 | None:intergenic |
| TCACGAGATTGTGCGTCTTT+TGG | 0.252294 | 7.2:+28157863 | MS.gene51602:CDS |
| GGTTTGCTTGGTTCCTCAAT+AGG | 0.253121 | 7.2:-28158454 | None:intergenic |
| ATAACCCATGTTAGTGTAAA+AGG | 0.259909 | 7.2:-28158375 | None:intergenic |
| AAAGACCTTGTCGTTCTTCT+TGG | 0.270351 | 7.2:-28157693 | None:intergenic |
| AAACAAACAAAGGAAGTAAT+GGG | 0.347305 | 7.2:-28157899 | None:intergenic |
| TCGTTCTTCTTGGGATTTGT+GGG | 0.353908 | 7.2:-28157683 | None:intergenic |
| TACCGAGTTGAGCCTTCAAT+TGG | 0.365816 | 7.2:-28159597 | None:intergenic |
| TGTGTAATCAGGAAAGTAAA+TGG | 0.366600 | 7.2:-28158411 | None:intergenic |
| GAAATGACGAATACAACTTC+TGG | 0.370051 | 7.2:-28158475 | None:intergenic |
| TAGAGTCTCCTCCAACTAAA+AGG | 0.373158 | 7.2:-28157791 | None:intergenic |
| CTCTCCAGTGGAAAAGTTCC+AGG | 0.373590 | 7.2:-28159399 | None:intergenic |
| AATTATTCAGACATCTCAAT+AGG | 0.389184 | 7.2:+28157961 | MS.gene51602:CDS |
| TGAATCTGACTACTTCTTCC+AGG | 0.389815 | 7.2:-28157843 | None:intergenic |
| GTCGTTCTTCTTGGGATTTG+TGG | 0.391231 | 7.2:-28157684 | None:intergenic |
| TCGATTATCAGAACCACCTT+TGG | 0.394739 | 7.2:-28158982 | None:intergenic |
| TTGTGAACCTCTAAGTGATA+AGG | 0.402008 | 7.2:+28158674 | MS.gene51602:CDS |
| TAAAAGGTCATTAATTGTTA+GGG | 0.402778 | 7.2:-28157775 | None:intergenic |
| CTCTTGTTTATTCTAGTTGT+AGG | 0.407262 | 7.2:+28157985 | MS.gene51602:CDS |
| AAGACCTTGTCGTTCTTCTT+GGG | 0.408898 | 7.2:-28157692 | None:intergenic |
| GAATAATTGAAGAATGATAC+TGG | 0.409547 | 7.2:-28157946 | None:intergenic |
| ATGTTAGTGTAAAAGGTATC+TGG | 0.415813 | 7.2:-28158368 | None:intergenic |
| ATATCACCTTCTGTGTAATC+AGG | 0.421532 | 7.2:-28158422 | None:intergenic |
| GTGTAATCAGGAAAGTAAAT+GGG | 0.423617 | 7.2:-28158410 | None:intergenic |
| CCTTCGAGTGAAGTTGAAAC+TGG | 0.426012 | 7.2:+28158801 | MS.gene51602:CDS |
| TTACACTAACATGGGTTATG+TGG | 0.430020 | 7.2:+28158379 | MS.gene51602:CDS |
| CTTCGCATTAGCATAACAAT+TGG | 0.432380 | 7.2:-28158078 | None:intergenic |
| TGTGAACCTCTAAGTGATAA+GGG | 0.439039 | 7.2:+28158675 | MS.gene51602:CDS |
| CATTAATTGTTAGGGATTCA+AGG | 0.441406 | 7.2:-28157767 | None:intergenic |
| TGTTTATGGAGGTGCTTCTA+CGG | 0.442354 | 7.2:+28157917 | MS.gene51602:CDS |
| TTTCTTCGTGAAACATTAAC+CGG | 0.444332 | 7.2:+28158131 | MS.gene51602:CDS |
| AGTGAAGCATCAAGAGTAGC+AGG | 0.447937 | 7.2:-28158951 | None:intergenic |
| TTTGTTCATCTTCATCAGCT+GGG | 0.448183 | 7.2:-28159464 | None:intergenic |
| AATACAACTTCTGGTTTGCT+TGG | 0.449113 | 7.2:-28158466 | None:intergenic |
| CTCCTCTTCATGTCTTCACT+AGG | 0.450709 | 7.2:-28158711 | None:intergenic |
| GGTAAAGAGACGAAGCATAA+GGG | 0.458104 | 7.2:+28158822 | MS.gene51602:CDS |
| CTTCCTTTGTTTGTTTATGG+AGG | 0.462255 | 7.2:+28157906 | MS.gene51602:CDS |
| ACAACCTTCAATATGATCTT+CGG | 0.467205 | 7.2:+28159900 | MS.gene51602:CDS |
| TAAGGGGAATCTGAAGAGAT+TGG | 0.467367 | 7.2:+28158839 | MS.gene51602:CDS |
| ATAACCGAAGATCATATTGA+AGG | 0.469011 | 7.2:-28159904 | None:intergenic |
| TGGTAAAGAGACGAAGCATA+AGG | 0.472743 | 7.2:+28158821 | MS.gene51602:CDS |
| AGCCTTTCTGTAGAATTACT+AGG | 0.473672 | 7.2:+28158604 | MS.gene51602:CDS |
| TAAACAAACAAAGGAAGTAA+TGG | 0.475308 | 7.2:-28157900 | None:intergenic |
| TGAAGGTTGTAGACCGCTCT+TGG | 0.478034 | 7.2:-28159887 | None:intergenic |
| CCTCTAAGTGATAAGGGAAA+AGG | 0.486029 | 7.2:+28158681 | MS.gene51602:CDS |
| GTTTATGGAGGTGCTTCTAC+GGG | 0.488444 | 7.2:+28157918 | MS.gene51602:CDS |
| TTGGAGAGATCTGAGGAAAT+CGG | 0.495611 | 7.2:+28158858 | MS.gene51602:CDS |
| CTGATAATCGAAAGCGAAAG+AGG | 0.504756 | 7.2:+28158994 | MS.gene51602:CDS |
| TACTTTCCTGATTACACAGA+AGG | 0.511531 | 7.2:+28158416 | MS.gene51602:CDS |
| ACTAAGATACATGGATAAAG+AGG | 0.514425 | 7.2:+28157656 | None:intergenic |
| ATGAAAATCAGACCAACCTC+AGG | 0.521853 | 7.2:-28158332 | None:intergenic |
| TGTAGAATTACTAGGCAGGT+TGG | 0.526393 | 7.2:+28158612 | MS.gene51602:CDS |
| TTTCTGTAGAATTACTAGGC+AGG | 0.530292 | 7.2:+28158608 | MS.gene51602:CDS |
| AAAGAAGGAAATGTTGGAAG+AGG | 0.533397 | 7.2:+28159359 | MS.gene51602:CDS |
| ACCGAGTTGAGCCTTCAATT+GGG | 0.534244 | 7.2:-28159596 | None:intergenic |
| AACTAGAAATTATATCATCT+AGG | 0.541748 | 7.2:-28157818 | None:intergenic |
| AGAAACAATGCACTGAAAGA+TGG | 0.543949 | 7.2:-28159430 | None:intergenic |
| TCAGGAAAGTAAATGGGGAT+AGG | 0.544906 | 7.2:-28158404 | None:intergenic |
| CTTCAGATTATTTATAACAC+CGG | 0.547371 | 7.2:-28158150 | None:intergenic |
| AAAATTAGCATTGCAGAGAG+TGG | 0.552781 | 7.2:-28159553 | None:intergenic |
| CGTTCTTCTTGGGATTTGTG+GGG | 0.562446 | 7.2:-28157682 | None:intergenic |
| ATCATAGAGATTAAACAGCA+AGG | 0.565860 | 7.2:-28158297 | None:intergenic |
| TCATAGAGATTAAACAGCAA+GGG | 0.568496 | 7.2:-28158296 | None:intergenic |
| CCAGTTTCAACTTCACTCGA+AGG | 0.571131 | 7.2:-28158801 | None:intergenic |
| CTAGGAGCTCAATGTGGTAG+CGG | 0.571359 | 7.2:+28159498 | MS.gene51602:CDS |
| ATATTCGTCAAATCCTATTG+AGG | 0.571651 | 7.2:+28158441 | MS.gene51602:CDS |
| AACAGGAAACATGATCTACT+TGG | 0.572077 | 7.2:+28158220 | MS.gene51602:CDS |
| TGCCTAGTAATTCTACAGAA+AGG | 0.574180 | 7.2:-28158606 | None:intergenic |
| GGTACAATATTTGAAGTGGA+TGG | 0.578879 | 7.2:-28157723 | None:intergenic |
| CTTAAATACATCGTTCAAAG+AGG | 0.584918 | 7.2:-28158766 | None:intergenic |
| ATCAACTATATCTGAAGACT+TGG | 0.588459 | 7.2:+28159623 | MS.gene51602:CDS |
| CGGTGTTATAAATAATCTGA+AGG | 0.588859 | 7.2:+28158151 | MS.gene51602:CDS |
| GAAGAGGAACTACTAATGAA+AGG | 0.592132 | 7.2:+28159375 | MS.gene51602:CDS |
| GAACAAAAGAATGAAGAACT+AGG | 0.593521 | 7.2:+28159480 | MS.gene51602:CDS |
| ATGCTAAAGATGCCTGAGGT+TGG | 0.596497 | 7.2:+28158320 | MS.gene51602:CDS |
| GCTGGAAAAGAAGGAAATGT+TGG | 0.600775 | 7.2:+28159353 | MS.gene51602:CDS |
| TCCCTAGTGAAGACATGAAG+AGG | 0.602962 | 7.2:+28158709 | MS.gene51602:CDS |
| AAATACATCGTTCAAAGAGG+AGG | 0.606106 | 7.2:-28158763 | None:intergenic |
| TCCTCTTCATGTCTTCACTA+GGG | 0.609445 | 7.2:-28158710 | None:intergenic |
| GTAAAGAGACGAAGCATAAG+GGG | 0.615552 | 7.2:+28158823 | MS.gene51602:CDS |
| CTACAACTAGAATAAACAAG+AGG | 0.616716 | 7.2:-28157984 | None:intergenic |
| GCCCAATTGAAGGCTCAACT+CGG | 0.619028 | 7.2:+28159595 | MS.gene51602:CDS |
| GGAAGTAATGGGGAATTCAA+CGG | 0.622314 | 7.2:-28157888 | None:intergenic |
| AAGAGTAGCAGGGTTTCTAG+AGG | 0.622395 | 7.2:-28158940 | None:intergenic |
| TGTAATCAGGAAAGTAAATG+GGG | 0.623436 | 7.2:-28158409 | None:intergenic |
| GCACCTCCATAAACAAACAA+AGG | 0.623874 | 7.2:-28157909 | None:intergenic |
| AGAAAATTGACAAAATCAGA+CGG | 0.625993 | 7.2:-28158113 | None:intergenic |
| GAAGAGATTGGAGAGATCTG+AGG | 0.630497 | 7.2:+28158851 | MS.gene51602:CDS |
| GAACTACTAATGAAAGGACC+TGG | 0.635191 | 7.2:+28159381 | MS.gene51602:CDS |
| TGCAGGTACAATATTTGAAG+TGG | 0.636267 | 7.2:-28157727 | None:intergenic |
| ATGGCTATCAACCTCTCCAG+TGG | 0.639552 | 7.2:-28159411 | None:intergenic |
| GTGAAGCATCAAGAGTAGCA+GGG | 0.645856 | 7.2:-28158950 | None:intergenic |
| TTCAAAGAGGAGGCAATATG+CGG | 0.652269 | 7.2:-28158753 | None:intergenic |
| CAGACTCGAACAAGATACGC+TGG | 0.657694 | 7.2:-28158019 | None:intergenic |
| CTAGTGAAGACATGAAGAGG+AGG | 0.671922 | 7.2:+28158712 | MS.gene51602:CDS |
| AACAAACAAAGGAAGTAATG+GGG | 0.674348 | 7.2:-28157898 | None:intergenic |
| TCTGATAGATCTACCAAGAG+CGG | 0.694150 | 7.2:+28159874 | MS.gene51602:intron |
| TGATATGCTAAAGATGCCTG+AGG | 0.719075 | 7.2:+28158316 | MS.gene51602:CDS |
| GAAGAACTAGGAGCTCAATG+TGG | 0.747887 | 7.2:+28159492 | MS.gene51602:CDS |
| AAATCCCAAGAAGAACGACA+AGG | 0.747956 | 7.2:+28157688 | MS.gene51602:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGCTAATTTTATTTTTAA+GGG | + | chr7.2:28159564-28159583 | MS.gene51602:CDS | 10.0% |
| !!! | CAATGCTAATTTTATTTTTA+AGG | + | chr7.2:28159563-28159582 | MS.gene51602:CDS | 15.0% |
| !! | AACTAGAAATTATATCATCT+AGG | - | chr7.2:28157821-28157840 | None:intergenic | 20.0% |
| !! | AGAAAAATAAAACCAACAAA+AGG | - | chr7.2:28159119-28159138 | None:intergenic | 20.0% |
| !! | TAAAAGGTCATTAATTGTTA+GGG | - | chr7.2:28157778-28157797 | None:intergenic | 20.0% |
| !! | TGTATAAATACTTTGACAAT+GGG | - | chr7.2:28159798-28159817 | None:intergenic | 20.0% |
| !!! | TCACAATATTTTTCAAATAG+TGG | - | chr7.2:28158660-28158679 | None:intergenic | 20.0% |
| ! | AAACAAACAAAGGAAGTAAT+GGG | - | chr7.2:28157902-28157921 | None:intergenic | 25.0% |
| ! | AATTATTCAGACATCTCAAT+AGG | + | chr7.2:28157961-28157980 | MS.gene51602:CDS | 25.0% |
| ! | AATTTCAACATTGTTTAAGC+AGG | + | chr7.2:28159753-28159772 | MS.gene51602:intron | 25.0% |
| ! | AGAAAATTGACAAAATCAGA+CGG | - | chr7.2:28158116-28158135 | None:intergenic | 25.0% |
| ! | CTAAAAGGTCATTAATTGTT+AGG | - | chr7.2:28157779-28157798 | None:intergenic | 25.0% |
| ! | CTGTATAAATACTTTGACAA+TGG | - | chr7.2:28159799-28159818 | None:intergenic | 25.0% |
| ! | CTTCAGATTATTTATAACAC+CGG | - | chr7.2:28158153-28158172 | None:intergenic | 25.0% |
| ! | GAATAATTGAAGAATGATAC+TGG | - | chr7.2:28157949-28157968 | None:intergenic | 25.0% |
| ! | GTAGTTGATTGATAAGATTT+AGG | + | chr7.2:28159238-28159257 | MS.gene51602:intron | 25.0% |
| ! | TAAACAAACAAAGGAAGTAA+TGG | - | chr7.2:28157903-28157922 | None:intergenic | 25.0% |
| !! | ACAATTAATGACCTTTTAGT+TGG | + | chr7.2:28157780-28157799 | MS.gene51602:CDS | 25.0% |
| !! | ATTTTCATCTTGTTAGAGAT+TGG | + | chr7.2:28158252-28158271 | MS.gene51602:CDS | 25.0% |
| !! | TTACTTCCTTTGTTTGTTTA+TGG | + | chr7.2:28157903-28157922 | MS.gene51602:CDS | 25.0% |
| !! | TTTTCATCTTGTTAGAGATT+GGG | + | chr7.2:28158253-28158272 | MS.gene51602:CDS | 25.0% |
| !!! | GATATAATTTCTAGTTTTCC+TGG | + | chr7.2:28157825-28157844 | MS.gene51602:CDS | 25.0% |
| AACAAACAAAGGAAGTAATG+GGG | - | chr7.2:28157901-28157920 | None:intergenic | 30.0% | |
| ACAACCTTCAATATGATCTT+CGG | + | chr7.2:28159900-28159919 | MS.gene51602:CDS | 30.0% | |
| AGATCACGTAATGCTTAAAA+TGG | - | chr7.2:28158539-28158558 | None:intergenic | 30.0% | |
| ATAACCCATGTTAGTGTAAA+AGG | - | chr7.2:28158378-28158397 | None:intergenic | 30.0% | |
| ATAACCGAAGATCATATTGA+AGG | - | chr7.2:28159907-28159926 | None:intergenic | 30.0% | |
| ATATTCGTCAAATCCTATTG+AGG | + | chr7.2:28158441-28158460 | MS.gene51602:CDS | 30.0% | |
| ATCAACTATATCTGAAGACT+TGG | + | chr7.2:28159623-28159642 | MS.gene51602:CDS | 30.0% | |
| ATCATAGAGATTAAACAGCA+AGG | - | chr7.2:28158300-28158319 | None:intergenic | 30.0% | |
| CAATAAATAACTCTTCTCAC+AGG | - | chr7.2:28159168-28159187 | None:intergenic | 30.0% | |
| CATTAATTGTTAGGGATTCA+AGG | - | chr7.2:28157770-28157789 | None:intergenic | 30.0% | |
| CTACAACTAGAATAAACAAG+AGG | - | chr7.2:28157987-28158006 | None:intergenic | 30.0% | |
| CTCACAGGAAAAAATGAAAA+TGG | - | chr7.2:28159153-28159172 | None:intergenic | 30.0% | |
| CTCTTTGAACGATGTATTTA+AGG | + | chr7.2:28158767-28158786 | MS.gene51602:CDS | 30.0% | |
| CTTAAATACATCGTTCAAAG+AGG | - | chr7.2:28158769-28158788 | None:intergenic | 30.0% | |
| GAACAAAAGAATGAAGAACT+AGG | + | chr7.2:28159480-28159499 | MS.gene51602:CDS | 30.0% | |
| GCTCAATAAGAATGAACTAT+GGG | - | chr7.2:28159270-28159289 | None:intergenic | 30.0% | |
| GTGTAATCAGGAAAGTAAAT+GGG | - | chr7.2:28158413-28158432 | None:intergenic | 30.0% | |
| TCATAGAGATTAAACAGCAA+GGG | - | chr7.2:28158299-28158318 | None:intergenic | 30.0% | |
| TGCTCAATAAGAATGAACTA+TGG | - | chr7.2:28159271-28159290 | None:intergenic | 30.0% | |
| TGTAATCAGGAAAGTAAATG+GGG | - | chr7.2:28158412-28158431 | None:intergenic | 30.0% | |
| TGTGTAATCAGGAAAGTAAA+TGG | - | chr7.2:28158414-28158433 | None:intergenic | 30.0% | |
| TTTCTTCGTGAAACATTAAC+CGG | + | chr7.2:28158131-28158150 | MS.gene51602:CDS | 30.0% | |
| ! | AGATACCTTTTACACTAACA+TGG | + | chr7.2:28158370-28158389 | MS.gene51602:CDS | 30.0% |
| ! | ATTTGAATGAAGCCTTTTGT+TGG | + | chr7.2:28159104-28159123 | MS.gene51602:intron | 30.0% |
| ! | CTCTTGTTTATTCTAGTTGT+AGG | + | chr7.2:28157985-28158004 | MS.gene51602:CDS | 30.0% |
| ! | GATACCTTTTACACTAACAT+GGG | + | chr7.2:28158371-28158390 | MS.gene51602:CDS | 30.0% |
| ! | GTTTTCAGCACATCAAAAAA+TGG | - | chr7.2:28159042-28159061 | None:intergenic | 30.0% |
| !! | ATATGCTTTTTGATGCATAC+AGG | + | chr7.2:28159316-28159335 | MS.gene51602:intron | 30.0% |
| !! | ATGTTAGTGTAAAAGGTATC+TGG | - | chr7.2:28158371-28158390 | None:intergenic | 30.0% |
| !! | ATTAATGACCTTTTAGTTGG+AGG | + | chr7.2:28157783-28157802 | MS.gene51602:CDS | 30.0% |
| !! | CGGTGTTATAAATAATCTGA+AGG | + | chr7.2:28158151-28158170 | MS.gene51602:CDS | 30.0% |
| !! | TATGCTTTTTGATGCATACA+GGG | + | chr7.2:28159317-28159336 | MS.gene51602:intron | 30.0% |
| !!! | AATTGGCAGCATTTTTTCTA+TGG | - | chr7.2:28158064-28158083 | None:intergenic | 30.0% |
| AAAAAGAAGATACATGGTGG+GGG | + | chr7.2:28158197-28158216 | MS.gene51602:CDS | 35.0% | |
| AAAATTAGCATTGCAGAGAG+TGG | - | chr7.2:28159556-28159575 | None:intergenic | 35.0% | |
| AAACAAAGCCATTCAGACAA+TGG | - | chr7.2:28159200-28159219 | None:intergenic | 35.0% | |
| AAAGAAGGAAATGTTGGAAG+AGG | + | chr7.2:28159359-28159378 | MS.gene51602:CDS | 35.0% | |
| AAATACATCGTTCAAAGAGG+AGG | - | chr7.2:28158766-28158785 | None:intergenic | 35.0% | |
| AACAGGAAACATGATCTACT+TGG | + | chr7.2:28158220-28158239 | MS.gene51602:CDS | 35.0% | |
| ACTTTGACAATGGGAACTTA+AGG | - | chr7.2:28159789-28159808 | None:intergenic | 35.0% | |
| AGAAACAATGCACTGAAAGA+TGG | - | chr7.2:28159433-28159452 | None:intergenic | 35.0% | |
| AGCCTTTCTGTAGAATTACT+AGG | + | chr7.2:28158604-28158623 | MS.gene51602:CDS | 35.0% | |
| ATATCACCTTCTGTGTAATC+AGG | - | chr7.2:28158425-28158444 | None:intergenic | 35.0% | |
| ATCCCGAAAAAGAAGATACA+TGG | + | chr7.2:28158191-28158210 | MS.gene51602:CDS | 35.0% | |
| CGAAAAAGAAGATACATGGT+GGG | + | chr7.2:28158195-28158214 | MS.gene51602:CDS | 35.0% | |
| CTTCGCATTAGCATAACAAT+TGG | - | chr7.2:28158081-28158100 | None:intergenic | 35.0% | |
| GAAAAAGAAGATACATGGTG+GGG | + | chr7.2:28158196-28158215 | MS.gene51602:CDS | 35.0% | |
| GAAATGACGAATACAACTTC+TGG | - | chr7.2:28158478-28158497 | None:intergenic | 35.0% | |
| GAAGAGGAACTACTAATGAA+AGG | + | chr7.2:28159375-28159394 | MS.gene51602:CDS | 35.0% | |
| TACTTTCCTGATTACACAGA+AGG | + | chr7.2:28158416-28158435 | MS.gene51602:CDS | 35.0% | |
| TGCAGGTACAATATTTGAAG+TGG | - | chr7.2:28157730-28157749 | None:intergenic | 35.0% | |
| TGCCTAGTAATTCTACAGAA+AGG | - | chr7.2:28158609-28158628 | None:intergenic | 35.0% | |
| TGTGAACCTCTAAGTGATAA+GGG | + | chr7.2:28158675-28158694 | MS.gene51602:CDS | 35.0% | |
| TTGTGAACCTCTAAGTGATA+AGG | + | chr7.2:28158674-28158693 | MS.gene51602:CDS | 35.0% | |
| TTTCTGTAGAATTACTAGGC+AGG | + | chr7.2:28158608-28158627 | MS.gene51602:CDS | 35.0% | |
| TTTGTTCATCTTCATCAGCT+GGG | - | chr7.2:28159467-28159486 | None:intergenic | 35.0% | |
| ! | CACCATGTATCTTCTTTTTC+GGG | - | chr7.2:28158196-28158215 | None:intergenic | 35.0% |
| ! | CCACCATGTATCTTCTTTTT+CGG | - | chr7.2:28158197-28158216 | None:intergenic | 35.0% |
| ! | CTTCCTTTGTTTGTTTATGG+AGG | + | chr7.2:28157906-28157925 | MS.gene51602:CDS | 35.0% |
| ! | GGTACAATATTTGAAGTGGA+TGG | - | chr7.2:28157726-28157745 | None:intergenic | 35.0% |
| ! | TTACACTAACATGGGTTATG+TGG | + | chr7.2:28158379-28158398 | MS.gene51602:CDS | 35.0% |
| ! | TTTTGTTCATCTTCATCAGC+TGG | - | chr7.2:28159468-28159487 | None:intergenic | 35.0% |
| !! | AATACAACTTCTGGTTTGCT+TGG | - | chr7.2:28158469-28158488 | None:intergenic | 35.0% |
| !! | ATCTGAAGACTTGGTCTTAA+AGG | + | chr7.2:28159632-28159651 | MS.gene51602:CDS | 35.0% |
| !!! | GCTTCACTTTTTGATTCCAA+AGG | + | chr7.2:28158966-28158985 | MS.gene51602:CDS | 35.0% |
| !!! | TCACTTTTTGATTCCAAAGG+TGG | + | chr7.2:28158969-28158988 | MS.gene51602:CDS | 35.0% |
| AAAGACCTTGTCGTTCTTCT+TGG | - | chr7.2:28157696-28157715 | None:intergenic | 40.0% | |
| AAAGCCATTCAGACAATGGT+TGG | - | chr7.2:28159196-28159215 | None:intergenic | 40.0% | |
| AAATCCCAAGAAGAACGACA+AGG | + | chr7.2:28157688-28157707 | MS.gene51602:CDS | 40.0% | |
| AAGACCTTGTCGTTCTTCTT+GGG | - | chr7.2:28157695-28157714 | None:intergenic | 40.0% | |
| AGCGAAAGAGGAAGTAAGTA+TGG | + | chr7.2:28159006-28159025 | MS.gene51602:intron | 40.0% | |
| AGTTCCAACCATTGTCTGAA+TGG | + | chr7.2:28159189-28159208 | MS.gene51602:intron | 40.0% | |
| ATGAAAATCAGACCAACCTC+AGG | - | chr7.2:28158335-28158354 | None:intergenic | 40.0% | |
| CATTGTTTAAGCAGGTTGCA+AGG | + | chr7.2:28159761-28159780 | MS.gene51602:intron | 40.0% | |
| CCGAAAAAGAAGATACATGG+TGG | + | chr7.2:28158194-28158213 | MS.gene51602:CDS | 40.0% | |
| CCTCTAAGTGATAAGGGAAA+AGG | + | chr7.2:28158681-28158700 | MS.gene51602:CDS | 40.0% | |
| CTCGCGTACATGTGTAATAA+AGG | + | chr7.2:28159725-28159744 | MS.gene51602:intron | 40.0% | |
| CTGATAATCGAAAGCGAAAG+AGG | + | chr7.2:28158994-28159013 | MS.gene51602:CDS | 40.0% | |
| CTTTAACAATGACAGCTTCG+CGG | + | chr7.2:28159830-28159849 | MS.gene51602:intron | 40.0% | |
| GAACTACTAATGAAAGGACC+TGG | + | chr7.2:28159381-28159400 | MS.gene51602:CDS | 40.0% | |
| GCACCTCCATAAACAAACAA+AGG | - | chr7.2:28157912-28157931 | None:intergenic | 40.0% | |
| GCTGGAAAAGAAGGAAATGT+TGG | + | chr7.2:28159353-28159372 | MS.gene51602:CDS | 40.0% | |
| GGTAAAGAGACGAAGCATAA+GGG | + | chr7.2:28158822-28158841 | MS.gene51602:CDS | 40.0% | |
| GTAAAGAGACGAAGCATAAG+GGG | + | chr7.2:28158823-28158842 | MS.gene51602:CDS | 40.0% | |
| TAAGGGGAATCTGAAGAGAT+TGG | + | chr7.2:28158839-28158858 | MS.gene51602:CDS | 40.0% | |
| TAGAGTCTCCTCCAACTAAA+AGG | - | chr7.2:28157794-28157813 | None:intergenic | 40.0% | |
| TCAGGAAAGTAAATGGGGAT+AGG | - | chr7.2:28158407-28158426 | None:intergenic | 40.0% | |
| TCCTCTTCATGTCTTCACTA+GGG | - | chr7.2:28158713-28158732 | None:intergenic | 40.0% | |
| TCGATTATCAGAACCACCTT+TGG | - | chr7.2:28158985-28159004 | None:intergenic | 40.0% | |
| TCGTTCTTCTTGGGATTTGT+GGG | - | chr7.2:28157686-28157705 | None:intergenic | 40.0% | |
| TCTGATAGATCTACCAAGAG+CGG | + | chr7.2:28159874-28159893 | MS.gene51602:intron | 40.0% | |
| TGAATCTGACTACTTCTTCC+AGG | - | chr7.2:28157846-28157865 | None:intergenic | 40.0% | |
| TGATATGCTAAAGATGCCTG+AGG | + | chr7.2:28158316-28158335 | MS.gene51602:CDS | 40.0% | |
| TGGTAAAGAGACGAAGCATA+AGG | + | chr7.2:28158821-28158840 | MS.gene51602:CDS | 40.0% | |
| TGTAGAATTACTAGGCAGGT+TGG | + | chr7.2:28158612-28158631 | MS.gene51602:CDS | 40.0% | |
| TTCAAAGAGGAGGCAATATG+CGG | - | chr7.2:28158756-28158775 | None:intergenic | 40.0% | |
| TTGGAGAGATCTGAGGAAAT+CGG | + | chr7.2:28158858-28158877 | MS.gene51602:CDS | 40.0% | |
| ! | CCTTTTCCCTTATCACTTAG+AGG | - | chr7.2:28158684-28158703 | None:intergenic | 40.0% |
| ! | GGAAGTAATGGGGAATTCAA+CGG | - | chr7.2:28157891-28157910 | None:intergenic | 40.0% |
| !! | TGAAAAAGCGCTGGAAAAGA+AGG | + | chr7.2:28159344-28159363 | MS.gene51602:CDS | 40.0% |
| !! | TGTTTATGGAGGTGCTTCTA+CGG | + | chr7.2:28157917-28157936 | MS.gene51602:CDS | 40.0% |
| ATGCTAAAGATGCCTGAGGT+TGG | + | chr7.2:28158320-28158339 | MS.gene51602:CDS | 45.0% | |
| CCAGTTTCAACTTCACTCGA+AGG | - | chr7.2:28158804-28158823 | None:intergenic | 45.0% | |
| CCTTCGAGTGAAGTTGAAAC+TGG | + | chr7.2:28158801-28158820 | MS.gene51602:CDS | 45.0% | |
| CGCGAAGCTGTCATTGTTAA+AGG | - | chr7.2:28159832-28159851 | None:intergenic | 45.0% | |
| CGTTCTTCTTGGGATTTGTG+GGG | - | chr7.2:28157685-28157704 | None:intergenic | 45.0% | |
| CTAGTGAAGACATGAAGAGG+AGG | + | chr7.2:28158712-28158731 | MS.gene51602:CDS | 45.0% | |
| CTCCTCTTCATGTCTTCACT+AGG | - | chr7.2:28158714-28158733 | None:intergenic | 45.0% | |
| GAAGAACTAGGAGCTCAATG+TGG | + | chr7.2:28159492-28159511 | MS.gene51602:CDS | 45.0% | |
| GAAGAGATTGGAGAGATCTG+AGG | + | chr7.2:28158851-28158870 | MS.gene51602:CDS | 45.0% | |
| GGAAAAAGCTGCCCAATTGA+AGG | + | chr7.2:28159585-28159604 | MS.gene51602:CDS | 45.0% | |
| GTCGTTCTTCTTGGGATTTG+TGG | - | chr7.2:28157687-28157706 | None:intergenic | 45.0% | |
| TCCCTAGTGAAGACATGAAG+AGG | + | chr7.2:28158709-28158728 | MS.gene51602:CDS | 45.0% | |
| ! | AAGAGTAGCAGGGTTTCTAG+AGG | - | chr7.2:28158943-28158962 | None:intergenic | 45.0% |
| ! | ACCGAGTTGAGCCTTCAATT+GGG | - | chr7.2:28159599-28159618 | None:intergenic | 45.0% |
| ! | AGTGAAGCATCAAGAGTAGC+AGG | - | chr7.2:28158954-28158973 | None:intergenic | 45.0% |
| ! | CACGAGATTGTGCGTCTTTT+GGG | + | chr7.2:28157864-28157883 | MS.gene51602:CDS | 45.0% |
| ! | GGTTTGCTTGGTTCCTCAAT+AGG | - | chr7.2:28158457-28158476 | None:intergenic | 45.0% |
| ! | GTGAAGCATCAAGAGTAGCA+GGG | - | chr7.2:28158953-28158972 | None:intergenic | 45.0% |
| ! | TACCGAGTTGAGCCTTCAAT+TGG | - | chr7.2:28159600-28159619 | None:intergenic | 45.0% |
| ! | TCACGAGATTGTGCGTCTTT+TGG | + | chr7.2:28157863-28157882 | MS.gene51602:CDS | 45.0% |
| !! | CTGCTGTTTACTTTTGCTGC+AGG | - | chr7.2:28157747-28157766 | None:intergenic | 45.0% |
| !! | GTTTATGGAGGTGCTTCTAC+GGG | + | chr7.2:28157918-28157937 | MS.gene51602:CDS | 45.0% |
| !!! | CTTTTCCAGCGCTTTTTCAG+TGG | - | chr7.2:28159343-28159362 | None:intergenic | 45.0% |
| ATGGCTATCAACCTCTCCAG+TGG | - | chr7.2:28159414-28159433 | None:intergenic | 50.0% | |
| CAGACTCGAACAAGATACGC+TGG | - | chr7.2:28158022-28158041 | None:intergenic | 50.0% | |
| CTAGGAGCTCAATGTGGTAG+CGG | + | chr7.2:28159498-28159517 | MS.gene51602:CDS | 50.0% | |
| CTCTCCAGTGGAAAAGTTCC+AGG | - | chr7.2:28159402-28159421 | None:intergenic | 50.0% | |
| GCCCAATTGAAGGCTCAACT+CGG | + | chr7.2:28159595-28159614 | MS.gene51602:CDS | 50.0% | |
| TGAAGGTTGTAGACCGCTCT+TGG | - | chr7.2:28159890-28159909 | None:intergenic | 50.0% | |
| ! | AAGATACATGGTGGGGGAAC+AGG | + | chr7.2:28158203-28158222 | MS.gene51602:CDS | 50.0% |
| ! | AGGACCTGGAACTTTTCCAC+TGG | + | chr7.2:28159395-28159414 | MS.gene51602:CDS | 50.0% |
| ! | CTGGAACTTTTCCACTGGAG+AGG | + | chr7.2:28159400-28159419 | MS.gene51602:CDS | 50.0% |
| AATGACAGCTTCGCGGAGCT+TGG | + | chr7.2:28159837-28159856 | MS.gene51602:intron | 55.0% | |
| ! | CAGGGCCACTGAAAAAGCGC+TGG | + | chr7.2:28159335-28159354 | MS.gene51602:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 28157666 | 28159929 | 28157666 | ID=MS.gene51602 |
| chr7.2 | mRNA | 28157666 | 28159929 | 28157666 | ID=MS.gene51602.t1;Parent=MS.gene51602 |
| chr7.2 | exon | 28157666 | 28158501 | 28157666 | ID=MS.gene51602.t1.exon1;Parent=MS.gene51602.t1 |
| chr7.2 | CDS | 28157666 | 28158501 | 28157666 | ID=cds.MS.gene51602.t1;Parent=MS.gene51602.t1 |
| chr7.2 | exon | 28158593 | 28159018 | 28158593 | ID=MS.gene51602.t1.exon2;Parent=MS.gene51602.t1 |
| chr7.2 | CDS | 28158593 | 28159018 | 28158593 | ID=cds.MS.gene51602.t1;Parent=MS.gene51602.t1 |
| chr7.2 | exon | 28159338 | 28159653 | 28159338 | ID=MS.gene51602.t1.exon3;Parent=MS.gene51602.t1 |
| chr7.2 | CDS | 28159338 | 28159653 | 28159338 | ID=cds.MS.gene51602.t1;Parent=MS.gene51602.t1 |
| chr7.2 | exon | 28159882 | 28159929 | 28159882 | ID=MS.gene51602.t1.exon4;Parent=MS.gene51602.t1 |
| chr7.2 | CDS | 28159882 | 28159929 | 28159882 | ID=cds.MS.gene51602.t1;Parent=MS.gene51602.t1 |
| Gene Sequence |
| Protein sequence |
