Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51715.t1 | XP_003625428.1 | 92.6 | 527 | 39 | 0 | 1 | 527 | 98 | 624 | 3.10E-222 | 781.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51715.t1 | Q9C950 | 57.7 | 532 | 216 | 5 | 1 | 527 | 116 | 643 | 1.9e-140 | 500.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51715.t1 | G7KYI5 | 92.6 | 527 | 39 | 0 | 1 | 527 | 98 | 624 | 2.2e-222 | 781.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050085 | MS.gene51715 | 0.806985 | 6.30E-50 | -1.69E-46 |
| MS.gene050384 | MS.gene51715 | 0.812444 | 4.23E-51 | -1.69E-46 |
| MS.gene050386 | MS.gene51715 | 0.813012 | 3.17E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene51715 | 0.816795 | 4.60E-52 | -1.69E-46 |
| MS.gene050941 | MS.gene51715 | 0.803305 | 3.71E-49 | -1.69E-46 |
| MS.gene051856 | MS.gene51715 | 0.806345 | 8.61E-50 | -1.69E-46 |
| MS.gene056480 | MS.gene51715 | 0.808932 | 2.43E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51715.t1 | MTR_7g099060 | 94.307 | 527 | 30 | 0 | 1 | 527 | 98 | 624 | 0.0 | 939 |
| MS.gene51715.t1 | MTR_4g089070 | 68.587 | 538 | 156 | 5 | 1 | 527 | 120 | 655 | 0.0 | 710 |
| MS.gene51715.t1 | MTR_4g032885 | 54.461 | 538 | 219 | 7 | 1 | 527 | 125 | 647 | 5.12e-178 | 516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51715.t1 | AT1G61040 | 62.921 | 534 | 185 | 7 | 1 | 527 | 116 | 643 | 0.0 | 596 |
| MS.gene51715.t1 | AT1G61040 | 62.921 | 534 | 185 | 7 | 1 | 527 | 116 | 643 | 0.0 | 596 |
| MS.gene51715.t1 | AT1G61040 | 62.921 | 534 | 185 | 7 | 1 | 527 | 116 | 643 | 0.0 | 596 |
Find 140 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTTACAAAATGGTTTA+TGG | 0.170699 | 3.4:-6946999 | MS.gene51715:CDS |
| CGTCCTTCTCCCGAGATTTC+CGG | 0.188455 | 3.4:+6946453 | None:intergenic |
| GGGAGTTCAGGCAGGGTTTA+TGG | 0.216936 | 3.4:-6946030 | MS.gene51715:CDS |
| AAAGAGGGGTCTAAAATTTC+AGG | 0.225292 | 3.4:-6947223 | MS.gene51715:CDS |
| TGGCTTGAGCTACTGAAATT+AGG | 0.237330 | 3.4:+6947172 | None:intergenic |
| GCTTTCAATGCTTTATTAAC+TGG | 0.248153 | 3.4:+6946356 | None:intergenic |
| TGCCACATTGCTAGCGATAT+TGG | 0.272264 | 3.4:+6946071 | None:intergenic |
| CAAGGTCAAAACTTACAAAA+TGG | 0.282281 | 3.4:-6947006 | MS.gene51715:CDS |
| TTGGAAGCTGCTGCTGCTGC+TGG | 0.283885 | 3.4:-6946164 | MS.gene51715:CDS |
| CAGAGAATTGAAGAAGTTGT+TGG | 0.303542 | 3.4:-6945999 | MS.gene51715:CDS |
| TTCTCAGCTGCAACATTTAG+TGG | 0.306966 | 3.4:+6946572 | None:intergenic |
| GTCCTTCTCCCGAGATTTCC+GGG | 0.324137 | 3.4:+6946454 | None:intergenic |
| TGGTGGAGCGCAGGGAGTTC+AGG | 0.326248 | 3.4:-6946042 | MS.gene51715:CDS |
| GACGGCCACTGCCGAGGCTT+TGG | 0.334682 | 3.4:-6946183 | MS.gene51715:CDS |
| TGATTGTTGGTTGTTTCGTT+AGG | 0.335264 | 3.4:-6946958 | MS.gene51715:CDS |
| CTAGTCCATCTCCTTGAAAA+AGG | 0.345767 | 3.4:+6946314 | None:intergenic |
| TCTAATTTATACAGTCGATT+AGG | 0.352085 | 3.4:+6946863 | None:intergenic |
| AGCAGCAGCTTCCAAAGCCT+CGG | 0.371541 | 3.4:+6946172 | None:intergenic |
| GTCACGCTTGGATGCTATCT+TGG | 0.378668 | 3.4:+6947405 | None:intergenic |
| TTCAGCTCGCGATGTGCTTC+CGG | 0.380178 | 3.4:+6947244 | None:intergenic |
| TACATTTCCCTTGTCACGCT+TGG | 0.383575 | 3.4:+6947393 | None:intergenic |
| GACTCTGTTCCTTCATCCAC+TGG | 0.384610 | 3.4:+6946119 | None:intergenic |
| CCAGACAAAACTGCAAGAAT+TGG | 0.386133 | 3.4:-6946483 | MS.gene51715:CDS |
| CTGAGATGAACAGAAAGAAC+AGG | 0.394551 | 3.4:-6946412 | MS.gene51715:CDS |
| ACCTACTTTCACTTTCACTA+TGG | 0.405201 | 3.4:+6947152 | None:intergenic |
| GGAGCGCAGGGAGTTCAGGC+AGG | 0.411409 | 3.4:-6946038 | MS.gene51715:CDS |
| GCAGCTGGAAATAATACTTC+TGG | 0.411995 | 3.4:-6946251 | MS.gene51715:CDS |
| TCTGGTGGTGCAGTGGGTGA+TGG | 0.416049 | 3.4:-6946233 | MS.gene51715:CDS |
| ACAAGTACTTGAATGTTGTC+TGG | 0.416298 | 3.4:-6946826 | MS.gene51715:CDS |
| TGTTTCGTTAGGGTTGGTAT+TGG | 0.420135 | 3.4:-6946947 | MS.gene51715:CDS |
| CTCTGCTGCGAGGTGGCAAA+TGG | 0.421789 | 3.4:-6946792 | MS.gene51715:CDS |
| GGACCGGTTGAAAAGGGAAT+TGG | 0.431061 | 3.4:-6946549 | MS.gene51715:CDS |
| GGGTCTAAAATTTCAGGATC+AGG | 0.435083 | 3.4:-6947217 | MS.gene51715:CDS |
| CCAGCTGCAGCCTCTTCAGC+CGG | 0.436278 | 3.4:+6946266 | None:intergenic |
| CTGAGAAGGACCGGTTGAAA+AGG | 0.436446 | 3.4:-6946556 | MS.gene51715:CDS |
| GTCTGATAGGGCTGCTAAGA+AGG | 0.438794 | 3.4:-6947446 | MS.gene51715:CDS |
| GGAGTTTAAACAGTGGGTTA+AGG | 0.439170 | 3.4:-6946738 | MS.gene51715:CDS |
| CTAGCAATGTGGCAAAAGTT+TGG | 0.440126 | 3.4:-6946062 | MS.gene51715:CDS |
| GTTGGTTGTTTCGTTAGGGT+TGG | 0.442169 | 3.4:-6946953 | MS.gene51715:CDS |
| TCGTTAGGGTTGGTATTGGC+AGG | 0.445479 | 3.4:-6946943 | MS.gene51715:CDS |
| GCATTGAAAGCAGGGGAGGC+AGG | 0.447530 | 3.4:-6946344 | MS.gene51715:CDS |
| AAATTAGGTTTCCCTATTTG+CGG | 0.450487 | 3.4:+6947187 | None:intergenic |
| GTTAATAAAGCATTGAAAGC+AGG | 0.455533 | 3.4:-6946353 | MS.gene51715:CDS |
| TGGAGGAATCCCGGAAATCT+CGG | 0.458345 | 3.4:-6946463 | MS.gene51715:CDS |
| CAAAGACTGGGCCTATCTAC+AGG | 0.458836 | 3.4:-6946919 | MS.gene51715:CDS |
| CCGGCTGAAGAGGCTGCAGC+TGG | 0.464826 | 3.4:-6946266 | MS.gene51715:CDS |
| TTCTGACAGGTCAGCTGCTA+AGG | 0.465616 | 3.4:-6947314 | MS.gene51715:CDS |
| CTCAGAAAGCCTCAGAGCCT+TGG | 0.470974 | 3.4:+6946430 | None:intergenic |
| GATGGAGGCAGCAATGGGAT+TGG | 0.471168 | 3.4:-6946215 | MS.gene51715:CDS |
| GAACTACTATAATTCAAAAC+CGG | 0.473536 | 3.4:-6946285 | MS.gene51715:CDS |
| ATTTGAAAAGCCATCGTTTG+AGG | 0.474055 | 3.4:-6947050 | MS.gene51715:CDS |
| GCAAAAGTTTGGTGGAGCGC+AGG | 0.478459 | 3.4:-6946051 | MS.gene51715:CDS |
| GATTGTTGGTTGTTTCGTTA+GGG | 0.478505 | 3.4:-6946957 | MS.gene51715:CDS |
| GCCTATCTACAGGCTCTGTA+TGG | 0.481256 | 3.4:-6946909 | MS.gene51715:CDS |
| GGTATTGGCAGGTCAAAGAC+TGG | 0.484693 | 3.4:-6946932 | MS.gene51715:CDS |
| CAAGGAGATGGACTAGATCA+AGG | 0.488397 | 3.4:-6946307 | MS.gene51715:CDS |
| TGCTGCTGCTGCTGGAAAGT+TGG | 0.488651 | 3.4:-6946156 | MS.gene51715:CDS |
| CAAGTACTTGAATGTTGTCT+GGG | 0.495702 | 3.4:-6946825 | MS.gene51715:CDS |
| GTTTAAACTCCTCCTCAAGC+GGG | 0.501257 | 3.4:+6946750 | None:intergenic |
| AACATTCAAGTACTTGTATG+TGG | 0.501552 | 3.4:+6946832 | None:intergenic |
| ACCATACAGAGCCTGTAGAT+AGG | 0.505421 | 3.4:+6946908 | None:intergenic |
| TGCAAGAATTGGAGGAATCC+CGG | 0.506961 | 3.4:-6946472 | MS.gene51715:CDS |
| GTGGGTGATGGAGGCAGCAA+TGG | 0.511883 | 3.4:-6946221 | MS.gene51715:CDS |
| AGCTTCCAAAGCCTCGGCAG+TGG | 0.512251 | 3.4:+6946178 | None:intergenic |
| CTTCAACATCCTCGTCACTA+CGG | 0.517935 | 3.4:+6947128 | None:intergenic |
| GAAGCTTTGTCTGAAAATGA+AGG | 0.519185 | 3.4:-6947109 | MS.gene51715:CDS |
| GACAAAACTGCAAGAATTGG+AGG | 0.524371 | 3.4:-6946480 | MS.gene51715:CDS |
| TTCAACATCCTCGTCACTAC+GGG | 0.525338 | 3.4:+6947129 | None:intergenic |
| TGAGAAGGACCGGTTGAAAA+GGG | 0.526022 | 3.4:-6946555 | MS.gene51715:CDS |
| GGAGGAATCCCGGAAATCTC+GGG | 0.526557 | 3.4:-6946462 | MS.gene51715:CDS |
| TTAATAAAGCATTGAAAGCA+GGG | 0.529926 | 3.4:-6946352 | MS.gene51715:CDS |
| GGCAGCAATGGGATTGGAGC+TGG | 0.532641 | 3.4:-6946209 | MS.gene51715:CDS |
| GGTGGTGCAGTGGGTGATGG+AGG | 0.533573 | 3.4:-6946230 | MS.gene51715:CDS |
| TGGGTGATGGAGGCAGCAAT+GGG | 0.535163 | 3.4:-6946220 | MS.gene51715:CDS |
| AAGCTTTGTCTGAAAATGAA+GGG | 0.535182 | 3.4:-6947108 | MS.gene51715:CDS |
| TAATTCAAAACCGGCTGAAG+AGG | 0.535280 | 3.4:-6946276 | MS.gene51715:CDS |
| TGTCTGGATCTTCTCTACTC+CGG | 0.540198 | 3.4:+6946499 | None:intergenic |
| ATGTTGCAGCTGAGAAGGAC+CGG | 0.542009 | 3.4:-6946565 | MS.gene51715:CDS |
| ACTAAATGTTGCAGCTGAGA+AGG | 0.543890 | 3.4:-6946570 | MS.gene51715:CDS |
| TGAGGAGGAGTTTAAACAGT+GGG | 0.546108 | 3.4:-6946744 | MS.gene51715:CDS |
| TGAATGAACTGCGTGCTAAG+AGG | 0.547152 | 3.4:-6947282 | MS.gene51715:CDS |
| AGCACATCGCGAGCTGAAAG+AGG | 0.547212 | 3.4:-6947239 | MS.gene51715:CDS |
| GAGCGCAGGGAGTTCAGGCA+GGG | 0.549229 | 3.4:-6946037 | MS.gene51715:CDS |
| ATCCCGGAAATCTCGGGAGA+AGG | 0.549427 | 3.4:-6946456 | MS.gene51715:CDS |
| GAGGCTGAAACAGCGAGAGC+CGG | 0.553800 | 3.4:-6947263 | MS.gene51715:CDS |
| TGGTATGACGGCCACTGCCG+AGG | 0.559819 | 3.4:-6946189 | MS.gene51715:CDS |
| AAGTAGAGCGAAGTGGTGGC+CGG | 0.562543 | 3.4:-6946715 | MS.gene51715:CDS |
| GGTGATTACAAGAGAAGAAG+AGG | 0.564356 | 3.4:-6945924 | MS.gene51715:CDS |
| CATCTAGCCTCTTCAGCATC+CGG | 0.564400 | 3.4:+6946696 | None:intergenic |
| GAAAGCAAGAACGATGCAGC+CGG | 0.567987 | 3.4:-6946518 | MS.gene51715:CDS |
| CATTTGCCACCTCGCAGCAG+AGG | 0.570644 | 3.4:+6946793 | None:intergenic |
| ACAAGAGCTCCAGTGGATGA+AGG | 0.572277 | 3.4:-6946128 | MS.gene51715:CDS |
| GTGGTGGCCGGATGCTGAAG+AGG | 0.573366 | 3.4:-6946703 | MS.gene51715:CDS |
| GACAGGTCAGCTGCTAAGGA+TGG | 0.574292 | 3.4:-6947310 | MS.gene51715:CDS |
| CAAAAGTTTGGTGGAGCGCA+GGG | 0.575970 | 3.4:-6946050 | MS.gene51715:CDS |
| GATGATGACAAGATAATGCC+TGG | 0.576356 | 3.4:-6947073 | MS.gene51715:CDS |
| GATAGCATCCAAGCGTGACA+AGG | 0.578775 | 3.4:-6947401 | MS.gene51715:CDS |
| GCAATGTGGCAAAAGTTTGG+TGG | 0.581264 | 3.4:-6946059 | MS.gene51715:CDS |
| ATCACACGAGAAGACGGAAG+AGG | 0.583932 | 3.4:+6947352 | None:intergenic |
| GCCATAGTGAAAGTGAAAGT+AGG | 0.587909 | 3.4:-6947153 | MS.gene51715:CDS |
| GCACATCGCGAGCTGAAAGA+GGG | 0.588648 | 3.4:-6947238 | MS.gene51715:CDS |
| TGTTTAAACTCCTCCTCAAG+CGG | 0.589955 | 3.4:+6946749 | None:intergenic |
| ATCTCGGGAGAAGGACGCCA+AGG | 0.590489 | 3.4:-6946447 | MS.gene51715:CDS |
| GGTCTAAAATTTCAGGATCA+GGG | 0.591143 | 3.4:-6947216 | MS.gene51715:CDS |
| AATACTTCTGGTGGTGCAGT+GGG | 0.597159 | 3.4:-6946239 | MS.gene51715:CDS |
| TAAAAGAAATCACCATTCCA+AGG | 0.599048 | 3.4:-6947024 | MS.gene51715:CDS |
| TGCGAGGTGGCAAATGGCCA+TGG | 0.599400 | 3.4:-6946786 | MS.gene51715:CDS |
| CATCTACTAGATCTTCTGAC+AGG | 0.600420 | 3.4:-6947327 | MS.gene51715:CDS |
| TTTAAACTCCTCCTCAAGCG+GGG | 0.602948 | 3.4:+6946751 | None:intergenic |
| TGGGATTGGAGCTGGTATGA+CGG | 0.607971 | 3.4:-6946201 | MS.gene51715:CDS |
| GATGACATCACACGAGAAGA+CGG | 0.608285 | 3.4:+6947346 | None:intergenic |
| GTCTAAAATTTCAGGATCAG+GGG | 0.613225 | 3.4:-6947215 | MS.gene51715:CDS |
| TAATACTTCTGGTGGTGCAG+TGG | 0.614229 | 3.4:-6946240 | MS.gene51715:CDS |
| GAGTCCCAGAAAACGATGGA+AGG | 0.614728 | 3.4:-6945971 | MS.gene51715:CDS |
| GGTAGACACAAGAGCTCCAG+TGG | 0.616107 | 3.4:-6946135 | MS.gene51715:CDS |
| AGAAGGACGCCAAGGCTCTG+AGG | 0.617944 | 3.4:-6946439 | MS.gene51715:CDS |
| ATAGCATCCAAGCGTGACAA+GGG | 0.619336 | 3.4:-6947400 | MS.gene51715:CDS |
| GCTGAAGAGGCTAGATGTGG+TGG | 0.622446 | 3.4:-6946690 | MS.gene51715:CDS |
| TCTAAAATTTCAGGATCAGG+GGG | 0.625310 | 3.4:-6947214 | MS.gene51715:CDS |
| TAAAGCATTGAAAGCAGGGG+AGG | 0.625312 | 3.4:-6946348 | MS.gene51715:CDS |
| GTATTGGCAGGTCAAAGACT+GGG | 0.637870 | 3.4:-6946931 | MS.gene51715:CDS |
| CATCAGCTGACATTAACAGT+TGG | 0.642633 | 3.4:-6945945 | MS.gene51715:CDS |
| ACACGAGAAGACGGAAGAGG+CGG | 0.642902 | 3.4:+6947355 | None:intergenic |
| CACATCGCGAGCTGAAAGAG+GGG | 0.647083 | 3.4:-6947237 | MS.gene51715:CDS |
| ATGAGACCTCTGCTGCGAGG+TGG | 0.647938 | 3.4:-6946799 | MS.gene51715:CDS |
| AAGTAGGTCCCGTAGTGACG+AGG | 0.658216 | 3.4:-6947137 | MS.gene51715:CDS |
| TAATAAAGCATTGAAAGCAG+GGG | 0.659215 | 3.4:-6946351 | MS.gene51715:CDS |
| ATACAGTCGATTAGGATCCG+AGG | 0.660349 | 3.4:+6946871 | None:intergenic |
| GTGATTACAAGAGAAGAAGA+GGG | 0.663120 | 3.4:-6945923 | MS.gene51715:CDS |
| AAGGAAGTAGAGCGAAGTGG+TGG | 0.663190 | 3.4:-6946719 | MS.gene51715:CDS |
| TTAAACTCCTCCTCAAGCGG+GGG | 0.673760 | 3.4:+6946752 | None:intergenic |
| GTTAAGGAAGTAGAGCGAAG+TGG | 0.674298 | 3.4:-6946722 | MS.gene51715:CDS |
| TTCTAACATCTGCTTCACAG+TGG | 0.675939 | 3.4:+6946619 | None:intergenic |
| TTTCGAGTCCCAGAAAACGA+TGG | 0.687907 | 3.4:-6945975 | MS.gene51715:CDS |
| AAGTACTTGAATGTTGTCTG+GGG | 0.689030 | 3.4:-6946824 | MS.gene51715:CDS |
| TTGAGGAGGAGTTTAAACAG+TGG | 0.689149 | 3.4:-6946745 | MS.gene51715:CDS |
| TGCCAATATCGCTAGCAATG+TGG | 0.691084 | 3.4:-6946073 | MS.gene51715:CDS |
| GCTGGAAATAATACTTCTGG+TGG | 0.697224 | 3.4:-6946248 | MS.gene51715:CDS |
| GATGCTGAAGAGGCTAGATG+TGG | 0.716515 | 3.4:-6946693 | MS.gene51715:CDS |
| GAAATGAGACCTCTGCTGCG+AGG | 0.717415 | 3.4:-6946802 | MS.gene51715:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTTACAAAATGGTTTA+TGG | - | chr3.4:6946390-6946409 | MS.gene51715:CDS | 20.0% |
| ! | GAACTACTATAATTCAAAAC+CGG | - | chr3.4:6947104-6947123 | MS.gene51715:CDS | 25.0% |
| ! | TCTAATTTATACAGTCGATT+AGG | + | chr3.4:6946529-6946548 | None:intergenic | 25.0% |
| !!! | TTAATAAAGCATTGAAAGCA+GGG | - | chr3.4:6947037-6947056 | MS.gene51715:CDS | 25.0% |
| AAATTAGGTTTCCCTATTTG+CGG | + | chr3.4:6946205-6946224 | None:intergenic | 30.0% | |
| AACAATCAACTCCTCAAAAA+AGG | + | chr3.4:6946419-6946438 | None:intergenic | 30.0% | |
| AACATTCAAGTACTTGTATG+TGG | + | chr3.4:6946560-6946579 | None:intergenic | 30.0% | |
| AAGAGAAAAAATCTATCTCG+CGG | - | chr3.4:6946791-6946810 | MS.gene51715:CDS | 30.0% | |
| ACAATCAACTCCTCAAAAAA+GGG | + | chr3.4:6946418-6946437 | None:intergenic | 30.0% | |
| CAAGGTCAAAACTTACAAAA+TGG | - | chr3.4:6946383-6946402 | MS.gene51715:CDS | 30.0% | |
| TAAAAGAAATCACCATTCCA+AGG | - | chr3.4:6946365-6946384 | MS.gene51715:CDS | 30.0% | |
| ! | AAGCTTTGTCTGAAAATGAA+GGG | - | chr3.4:6946281-6946300 | MS.gene51715:CDS | 30.0% |
| ! | AGAGATGATTTTGTCTGATA+GGG | - | chr3.4:6945931-6945950 | MS.gene51715:CDS | 30.0% |
| ! | GCTTTCAATGCTTTATTAAC+TGG | + | chr3.4:6947036-6947055 | None:intergenic | 30.0% |
| !! | CATTTTGTAAGTTTTGACCT+TGG | + | chr3.4:6946385-6946404 | None:intergenic | 30.0% |
| !! | GTTAATAAAGCATTGAAAGC+AGG | - | chr3.4:6947036-6947055 | MS.gene51715:CDS | 30.0% |
| !! | TAATAAAGCATTGAAAGCAG+GGG | - | chr3.4:6947038-6947057 | MS.gene51715:CDS | 30.0% |
| !!! | TTTTTTGAGGAGTTGATTGT+TGG | - | chr3.4:6946418-6946437 | MS.gene51715:CDS | 30.0% |
| AAGTACTTGAATGTTGTCTG+GGG | - | chr3.4:6946565-6946584 | MS.gene51715:CDS | 35.0% | |
| ACAAGTACTTGAATGTTGTC+TGG | - | chr3.4:6946563-6946582 | MS.gene51715:CDS | 35.0% | |
| ACCTACTTTCACTTTCACTA+TGG | + | chr3.4:6946240-6946259 | None:intergenic | 35.0% | |
| ATTTGAAAAGCCATCGTTTG+AGG | - | chr3.4:6946339-6946358 | MS.gene51715:CDS | 35.0% | |
| CAAGTACTTGAATGTTGTCT+GGG | - | chr3.4:6946564-6946583 | MS.gene51715:CDS | 35.0% | |
| CAGAGAATTGAAGAAGTTGT+TGG | - | chr3.4:6947390-6947409 | MS.gene51715:CDS | 35.0% | |
| GTGATTACAAGAGAAGAAGA+GGG | - | chr3.4:6947466-6947485 | MS.gene51715:CDS | 35.0% | |
| ! | AAAGAGGGGTCTAAAATTTC+AGG | - | chr3.4:6946166-6946185 | MS.gene51715:CDS | 35.0% |
| ! | GAAGCTTTGTCTGAAAATGA+AGG | - | chr3.4:6946280-6946299 | MS.gene51715:CDS | 35.0% |
| ! | GAGAGATGATTTTGTCTGAT+AGG | - | chr3.4:6945930-6945949 | MS.gene51715:CDS | 35.0% |
| ! | GATTGTTGGTTGTTTCGTTA+GGG | - | chr3.4:6946432-6946451 | MS.gene51715:CDS | 35.0% |
| ! | GGTCTAAAATTTCAGGATCA+GGG | - | chr3.4:6946173-6946192 | MS.gene51715:CDS | 35.0% |
| ! | GTCTAAAATTTCAGGATCAG+GGG | - | chr3.4:6946174-6946193 | MS.gene51715:CDS | 35.0% |
| ! | TCTAAAATTTCAGGATCAGG+GGG | - | chr3.4:6946175-6946194 | MS.gene51715:CDS | 35.0% |
| ! | TCTTTTATGTCCTCAAACGA+TGG | + | chr3.4:6946352-6946371 | None:intergenic | 35.0% |
| ! | TGATTGTTGGTTGTTTCGTT+AGG | - | chr3.4:6946431-6946450 | MS.gene51715:CDS | 35.0% |
| ! | TTTCCAATTCCCTTTTCAAC+CGG | + | chr3.4:6946846-6946865 | None:intergenic | 35.0% |
| !! | CAGGTTATGATCCTTTTTCA+AGG | - | chr3.4:6947064-6947083 | MS.gene51715:CDS | 35.0% |
| !! | TGTAAGTTTTGACCTTGGAA+TGG | + | chr3.4:6946380-6946399 | None:intergenic | 35.0% |
| !!! | ATGATCCTTTTTCAAGGAGA+TGG | - | chr3.4:6947070-6947089 | MS.gene51715:CDS | 35.0% |
| ACTAAATGTTGCAGCTGAGA+AGG | - | chr3.4:6946819-6946838 | MS.gene51715:CDS | 40.0% | |
| AGAAAAAATCTATCTCGCGG+AGG | - | chr3.4:6946794-6946813 | MS.gene51715:CDS | 40.0% | |
| CATCAGCTGACATTAACAGT+TGG | - | chr3.4:6947444-6947463 | MS.gene51715:CDS | 40.0% | |
| CATCTACTAGATCTTCTGAC+AGG | - | chr3.4:6946062-6946081 | MS.gene51715:CDS | 40.0% | |
| CCAGACAAAACTGCAAGAAT+TGG | - | chr3.4:6946906-6946925 | MS.gene51715:CDS | 40.0% | |
| CTAGCAATGTGGCAAAAGTT+TGG | - | chr3.4:6947327-6947346 | MS.gene51715:CDS | 40.0% | |
| CTAGTCCATCTCCTTGAAAA+AGG | + | chr3.4:6947078-6947097 | None:intergenic | 40.0% | |
| CTGAGATGAACAGAAAGAAC+AGG | - | chr3.4:6946977-6946996 | MS.gene51715:CDS | 40.0% | |
| GACAAAACTGCAAGAATTGG+AGG | - | chr3.4:6946909-6946928 | MS.gene51715:CDS | 40.0% | |
| GATGATGACAAGATAATGCC+TGG | - | chr3.4:6946316-6946335 | MS.gene51715:CDS | 40.0% | |
| GCAGCTGGAAATAATACTTC+TGG | - | chr3.4:6947138-6947157 | MS.gene51715:CDS | 40.0% | |
| GCCATAGTGAAAGTGAAAGT+AGG | - | chr3.4:6946236-6946255 | MS.gene51715:CDS | 40.0% | |
| GCTGGAAATAATACTTCTGG+TGG | - | chr3.4:6947141-6947160 | MS.gene51715:CDS | 40.0% | |
| GGTGAAAAATGTTGATGCCT+CGG | - | chr3.4:6946501-6946520 | MS.gene51715:CDS | 40.0% | |
| GGTGATTACAAGAGAAGAAG+AGG | - | chr3.4:6947465-6947484 | MS.gene51715:CDS | 40.0% | |
| TAATTCAAAACCGGCTGAAG+AGG | - | chr3.4:6947113-6947132 | MS.gene51715:CDS | 40.0% | |
| TGAGGAGGAGTTTAAACAGT+GGG | - | chr3.4:6946645-6946664 | MS.gene51715:CDS | 40.0% | |
| TGGCTTGAGCTACTGAAATT+AGG | + | chr3.4:6946220-6946239 | None:intergenic | 40.0% | |
| TGTTTAAACTCCTCCTCAAG+CGG | + | chr3.4:6946643-6946662 | None:intergenic | 40.0% | |
| TTCTAACATCTGCTTCACAG+TGG | + | chr3.4:6946773-6946792 | None:intergenic | 40.0% | |
| TTCTCAGCTGCAACATTTAG+TGG | + | chr3.4:6946820-6946839 | None:intergenic | 40.0% | |
| TTGAGGAGGAGTTTAAACAG+TGG | - | chr3.4:6946644-6946663 | MS.gene51715:CDS | 40.0% | |
| ! | AACGATGGCTTTTCAAATCC+AGG | + | chr3.4:6946337-6946356 | None:intergenic | 40.0% |
| ! | GGGTCTAAAATTTCAGGATC+AGG | - | chr3.4:6946172-6946191 | MS.gene51715:CDS | 40.0% |
| !! | CCAATTCTTGCAGTTTTGTC+TGG | + | chr3.4:6946909-6946928 | None:intergenic | 40.0% |
| !! | GGAGTTTAAACAGTGGGTTA+AGG | - | chr3.4:6946651-6946670 | MS.gene51715:CDS | 40.0% |
| !! | TGTTTCGTTAGGGTTGGTAT+TGG | - | chr3.4:6946442-6946461 | MS.gene51715:CDS | 40.0% |
| !!! | GTTTATGGAGCCCTTTTTTG+AGG | - | chr3.4:6946405-6946424 | MS.gene51715:CDS | 40.0% |
| ACCATACAGAGCCTGTAGAT+AGG | + | chr3.4:6946484-6946503 | None:intergenic | 45.0% | |
| ATACAGTCGATTAGGATCCG+AGG | + | chr3.4:6946521-6946540 | None:intergenic | 45.0% | |
| ATAGCATCCAAGCGTGACAA+GGG | - | chr3.4:6945989-6946008 | MS.gene51715:CDS | 45.0% | |
| CTTCAACATCCTCGTCACTA+CGG | + | chr3.4:6946264-6946283 | None:intergenic | 45.0% | |
| GATGACATCACACGAGAAGA+CGG | + | chr3.4:6946046-6946065 | None:intergenic | 45.0% | |
| GCAATGTGGCAAAAGTTTGG+TGG | - | chr3.4:6947330-6947349 | MS.gene51715:CDS | 45.0% | |
| GTTAAGGAAGTAGAGCGAAG+TGG | - | chr3.4:6946667-6946686 | MS.gene51715:CDS | 45.0% | |
| GTTTAAACTCCTCCTCAAGC+GGG | + | chr3.4:6946642-6946661 | None:intergenic | 45.0% | |
| TACATTTCCCTTGTCACGCT+TGG | + | chr3.4:6945999-6946018 | None:intergenic | 45.0% | |
| TGAATGAACTGCGTGCTAAG+AGG | - | chr3.4:6946107-6946126 | MS.gene51715:CDS | 45.0% | |
| TGAGAAGGACCGGTTGAAAA+GGG | - | chr3.4:6946834-6946853 | MS.gene51715:CDS | 45.0% | |
| TGCAAGAATTGGAGGAATCC+CGG | - | chr3.4:6946917-6946936 | MS.gene51715:CDS | 45.0% | |
| TGCCAATATCGCTAGCAATG+TGG | - | chr3.4:6947316-6947335 | MS.gene51715:CDS | 45.0% | |
| TGCCACATTGCTAGCGATAT+TGG | + | chr3.4:6947321-6947340 | None:intergenic | 45.0% | |
| TGTCTGGATCTTCTCTACTC+CGG | + | chr3.4:6946893-6946912 | None:intergenic | 45.0% | |
| TTCAACATCCTCGTCACTAC+GGG | + | chr3.4:6946263-6946282 | None:intergenic | 45.0% | |
| TTTAAACTCCTCCTCAAGCG+GGG | + | chr3.4:6946641-6946660 | None:intergenic | 45.0% | |
| ! | AATACTTCTGGTGGTGCAGT+GGG | - | chr3.4:6947150-6947169 | MS.gene51715:CDS | 45.0% |
| ! | GACTCCTTCCATCGTTTTCT+GGG | + | chr3.4:6947425-6947444 | None:intergenic | 45.0% |
| ! | GTATTGGCAGGTCAAAGACT+GGG | - | chr3.4:6946458-6946477 | MS.gene51715:CDS | 45.0% |
| ! | GTTGGTTGTTTCGTTAGGGT+TGG | - | chr3.4:6946436-6946455 | MS.gene51715:CDS | 45.0% |
| ! | TAATACTTCTGGTGGTGCAG+TGG | - | chr3.4:6947149-6947168 | MS.gene51715:CDS | 45.0% |
| ! | TGACTCCTTCCATCGTTTTC+TGG | + | chr3.4:6947426-6947445 | None:intergenic | 45.0% |
| ! | TTTCGAGTCCCAGAAAACGA+TGG | - | chr3.4:6947414-6947433 | MS.gene51715:CDS | 45.0% |
| !! | CAAGGAGATGGACTAGATCA+AGG | - | chr3.4:6947082-6947101 | MS.gene51715:CDS | 45.0% |
| !! | TAAAGCATTGAAAGCAGGGG+AGG | - | chr3.4:6947041-6947060 | MS.gene51715:CDS | 45.0% |
| AAGGAAGTAGAGCGAAGTGG+TGG | - | chr3.4:6946670-6946689 | MS.gene51715:CDS | 50.0% | |
| ACAAGAGCTCCAGTGGATGA+AGG | - | chr3.4:6947261-6947280 | MS.gene51715:CDS | 50.0% | |
| ATCACACGAGAAGACGGAAG+AGG | + | chr3.4:6946040-6946059 | None:intergenic | 50.0% | |
| ATGTTGCAGCTGAGAAGGAC+CGG | - | chr3.4:6946824-6946843 | MS.gene51715:CDS | 50.0% | |
| CAAAGACTGGGCCTATCTAC+AGG | - | chr3.4:6946470-6946489 | MS.gene51715:CDS | 50.0% | |
| CATCTAGCCTCTTCAGCATC+CGG | + | chr3.4:6946696-6946715 | None:intergenic | 50.0% | |
| CTGAGAAGGACCGGTTGAAA+AGG | - | chr3.4:6946833-6946852 | MS.gene51715:CDS | 50.0% | |
| GAAAGCAAGAACGATGCAGC+CGG | - | chr3.4:6946871-6946890 | MS.gene51715:CDS | 50.0% | |
| GACTCTGTTCCTTCATCCAC+TGG | + | chr3.4:6947273-6947292 | None:intergenic | 50.0% | |
| GAGTCCCAGAAAACGATGGA+AGG | - | chr3.4:6947418-6947437 | MS.gene51715:CDS | 50.0% | |
| GATAGCATCCAAGCGTGACA+AGG | - | chr3.4:6945988-6946007 | MS.gene51715:CDS | 50.0% | |
| GATGCTGAAGAGGCTAGATG+TGG | - | chr3.4:6946696-6946715 | MS.gene51715:CDS | 50.0% | |
| GCCTATCTACAGGCTCTGTA+TGG | - | chr3.4:6946480-6946499 | MS.gene51715:CDS | 50.0% | |
| GGACCGGTTGAAAAGGGAAT+TGG | - | chr3.4:6946840-6946859 | MS.gene51715:CDS | 50.0% | |
| GTCACGCTTGGATGCTATCT+TGG | + | chr3.4:6945987-6946006 | None:intergenic | 50.0% | |
| GTCTGATAGGGCTGCTAAGA+AGG | - | chr3.4:6945943-6945962 | MS.gene51715:CDS | 50.0% | |
| TGGAGGAATCCCGGAAATCT+CGG | - | chr3.4:6946926-6946945 | MS.gene51715:CDS | 50.0% | |
| TGGGATTGGAGCTGGTATGA+CGG | - | chr3.4:6947188-6947207 | MS.gene51715:CDS | 50.0% | |
| TTAAACTCCTCCTCAAGCGG+GGG | + | chr3.4:6946640-6946659 | None:intergenic | 50.0% | |
| TTCTGACAGGTCAGCTGCTA+AGG | - | chr3.4:6946075-6946094 | MS.gene51715:CDS | 50.0% | |
| ! | CAAAAGTTTGGTGGAGCGCA+GGG | - | chr3.4:6947339-6947358 | MS.gene51715:CDS | 50.0% |
| ! | CAGGGGGTTTTCCGCAAATA+GGG | - | chr3.4:6946191-6946210 | MS.gene51715:CDS | 50.0% |
| ! | TCAGGGGGTTTTCCGCAAAT+AGG | - | chr3.4:6946190-6946209 | MS.gene51715:CDS | 50.0% |
| !! | GGTATTGGCAGGTCAAAGAC+TGG | - | chr3.4:6946457-6946476 | MS.gene51715:CDS | 50.0% |
| !! | TCGTTAGGGTTGGTATTGGC+AGG | - | chr3.4:6946446-6946465 | MS.gene51715:CDS | 50.0% |
| AAGTAGAGCGAAGTGGTGGC+CGG | - | chr3.4:6946674-6946693 | MS.gene51715:CDS | 55.0% | |
| AAGTAGGTCCCGTAGTGACG+AGG | - | chr3.4:6946252-6946271 | MS.gene51715:CDS | 55.0% | |
| ACACGAGAAGACGGAAGAGG+CGG | + | chr3.4:6946037-6946056 | None:intergenic | 55.0% | |
| AGCACATCGCGAGCTGAAAG+AGG | - | chr3.4:6946150-6946169 | MS.gene51715:CDS | 55.0% | |
| AGCAGCAGCTTCCAAAGCCT+CGG | + | chr3.4:6947220-6947239 | None:intergenic | 55.0% | |
| ATCCCGGAAATCTCGGGAGA+AGG | - | chr3.4:6946933-6946952 | MS.gene51715:CDS | 55.0% | |
| CACATCGCGAGCTGAAAGAG+GGG | - | chr3.4:6946152-6946171 | MS.gene51715:CDS | 55.0% | |
| CGTCCTTCTCCCGAGATTTC+CGG | + | chr3.4:6946939-6946958 | None:intergenic | 55.0% | |
| CTCAGAAAGCCTCAGAGCCT+TGG | + | chr3.4:6946962-6946981 | None:intergenic | 55.0% | |
| GAAATGAGACCTCTGCTGCG+AGG | - | chr3.4:6946587-6946606 | MS.gene51715:CDS | 55.0% | |
| GACAGGTCAGCTGCTAAGGA+TGG | - | chr3.4:6946079-6946098 | MS.gene51715:CDS | 55.0% | |
| GATGGAGGCAGCAATGGGAT+TGG | - | chr3.4:6947174-6947193 | MS.gene51715:CDS | 55.0% | |
| GCACATCGCGAGCTGAAAGA+GGG | - | chr3.4:6946151-6946170 | MS.gene51715:CDS | 55.0% | |
| GCTGAAGAGGCTAGATGTGG+TGG | - | chr3.4:6946699-6946718 | MS.gene51715:CDS | 55.0% | |
| GGAGGAATCCCGGAAATCTC+GGG | - | chr3.4:6946927-6946946 | MS.gene51715:CDS | 55.0% | |
| GGGAGTTCAGGCAGGGTTTA+TGG | - | chr3.4:6947359-6947378 | MS.gene51715:CDS | 55.0% | |
| GGTAGACACAAGAGCTCCAG+TGG | - | chr3.4:6947254-6947273 | MS.gene51715:CDS | 55.0% | |
| GTCCTTCTCCCGAGATTTCC+GGG | + | chr3.4:6946938-6946957 | None:intergenic | 55.0% | |
| TGCTGCTGCTGCTGGAAAGT+TGG | - | chr3.4:6947233-6947252 | MS.gene51715:CDS | 55.0% | |
| TTCAGCTCGCGATGTGCTTC+CGG | + | chr3.4:6946148-6946167 | None:intergenic | 55.0% | |
| ! | GCAAAAGTTTGGTGGAGCGC+AGG | - | chr3.4:6947338-6947357 | MS.gene51715:CDS | 55.0% |
| !! | TGGGTGATGGAGGCAGCAAT+GGG | - | chr3.4:6947169-6947188 | MS.gene51715:CDS | 55.0% |
| AGAAGGACGCCAAGGCTCTG+AGG | - | chr3.4:6946950-6946969 | MS.gene51715:CDS | 60.0% | |
| AGCTTCCAAAGCCTCGGCAG+TGG | + | chr3.4:6947214-6947233 | None:intergenic | 60.0% | |
| ATCTCGGGAGAAGGACGCCA+AGG | - | chr3.4:6946942-6946961 | MS.gene51715:CDS | 60.0% | |
| ATGAGACCTCTGCTGCGAGG+TGG | - | chr3.4:6946590-6946609 | MS.gene51715:CDS | 60.0% | |
| CATTTGCCACCTCGCAGCAG+AGG | + | chr3.4:6946599-6946618 | None:intergenic | 60.0% | |
| CGGGGGTGAATCGCTAACCA+TGG | + | chr3.4:6946623-6946642 | None:intergenic | 60.0% | |
| CTCTGCTGCGAGGTGGCAAA+TGG | - | chr3.4:6946597-6946616 | MS.gene51715:CDS | 60.0% | |
| GAGGCTGAAACAGCGAGAGC+CGG | - | chr3.4:6946126-6946145 | MS.gene51715:CDS | 60.0% | |
| GCATTGAAAGCAGGGGAGGC+AGG | - | chr3.4:6947045-6947064 | MS.gene51715:CDS | 60.0% | |
| GGCAGCAATGGGATTGGAGC+TGG | - | chr3.4:6947180-6947199 | MS.gene51715:CDS | 60.0% | |
| TAGCGATTCACCCCCGCTTG+AGG | - | chr3.4:6946627-6946646 | MS.gene51715:CDS | 60.0% | |
| TGCGAGGTGGCAAATGGCCA+TGG | - | chr3.4:6946603-6946622 | MS.gene51715:CDS | 60.0% | |
| TTGGAAGCTGCTGCTGCTGC+TGG | - | chr3.4:6947225-6947244 | MS.gene51715:CDS | 60.0% | |
| ! | TCTGGTGGTGCAGTGGGTGA+TGG | - | chr3.4:6947156-6947175 | MS.gene51715:CDS | 60.0% |
| !! | GTGGGTGATGGAGGCAGCAA+TGG | - | chr3.4:6947168-6947187 | MS.gene51715:CDS | 60.0% |
| CCAGCTGCAGCCTCTTCAGC+CGG | + | chr3.4:6947126-6947145 | None:intergenic | 65.0% | |
| CGATTCACCCCCGCTTGAGG+AGG | - | chr3.4:6946630-6946649 | MS.gene51715:CDS | 65.0% | |
| GAGCGCAGGGAGTTCAGGCA+GGG | - | chr3.4:6947352-6947371 | MS.gene51715:CDS | 65.0% | |
| GTGGTGGCCGGATGCTGAAG+AGG | - | chr3.4:6946686-6946705 | MS.gene51715:CDS | 65.0% | |
| TGGTATGACGGCCACTGCCG+AGG | - | chr3.4:6947200-6947219 | MS.gene51715:CDS | 65.0% | |
| TGGTGGAGCGCAGGGAGTTC+AGG | - | chr3.4:6947347-6947366 | MS.gene51715:CDS | 65.0% | |
| ! | GGTGGTGCAGTGGGTGATGG+AGG | - | chr3.4:6947159-6947178 | MS.gene51715:CDS | 65.0% |
| CCGGCTGAAGAGGCTGCAGC+TGG | - | chr3.4:6947123-6947142 | MS.gene51715:CDS | 70.0% | |
| GACGGCCACTGCCGAGGCTT+TGG | - | chr3.4:6947206-6947225 | MS.gene51715:CDS | 70.0% | |
| GGAGCGCAGGGAGTTCAGGC+AGG | - | chr3.4:6947351-6947370 | MS.gene51715:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 6945914 | 6947497 | 6945914 | ID=MS.gene51715 |
| chr3.4 | mRNA | 6945914 | 6947497 | 6945914 | ID=MS.gene51715.t1;Parent=MS.gene51715 |
| chr3.4 | exon | 6945914 | 6947497 | 6945914 | ID=MS.gene51715.t1.exon1;Parent=MS.gene51715.t1 |
| chr3.4 | CDS | 6945914 | 6947497 | 6945914 | ID=cds.MS.gene51715.t1;Parent=MS.gene51715.t1 |
| Gene Sequence |
| Protein sequence |
