AlfalfaGEDB | MS.gene52323

M. sativa cultivar XinJiangDaYe / MS.gene52323

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008168 GO:0016740 GO:0016741
PFAM: PF03492.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52323.t1	AES80745.2	81.2	144	27	0	90	233	190	333	6.90E-57	230.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52323.t1	Q9AVK0	40.5	121	66	1	113	233	253	367	1.3e-19	98.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52323.t1	G7KXC1	81.2	144	27	0	90	233	190	333	4.9e-57	230.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049611	MS.gene52323	0.806445	8.20E-50	-1.69E-46
MS.gene051138	MS.gene52323	0.815198	1.05E-51	-1.69E-46
MS.gene056590	MS.gene52323	0.801359	9.34E-49	-1.69E-46
MS.gene056748	MS.gene52323	0.809531	1.81E-50	-1.69E-46
MS.gene056856	MS.gene52323	0.820267	7.51E-53	-1.69E-46
MS.gene058099	MS.gene52323	0.804201	2.42E-49	-1.69E-46
MS.gene058175	MS.gene52323	0.803491	3.40E-49	-1.69E-46
MS.gene058452	MS.gene52323	0.842732	2.16E-58	-1.69E-46
MS.gene060405	MS.gene52323	0.821367	4.19E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52323.t1	MTR_7g084330	81.250	144	27	0	90	233	190	333	6.20e-78	238
MS.gene52323.t1	MTR_7g084620	85.950	121	17	0	113	233	245	365	4.06e-72	224
MS.gene52323.t1	MTR_7g084350	68.182	154	46	1	80	233	215	365	2.62e-68	214
MS.gene52323.t1	MTR_3g467560	68.750	144	40	2	90	231	247	387	2.27e-61	197
MS.gene52323.t1	MTR_7g084340	70.732	123	36	0	109	231	7	129	3.15e-57	178
MS.gene52323.t1	MTR_6g015620	48.760	121	57	2	114	231	18	136	3.36e-32	114
MS.gene52323.t1	MTR_3g117060	44.286	140	63	3	105	231	230	367	2.89e-30	115
MS.gene52323.t1	MTR_1g022465	41.322	121	63	2	113	231	262	376	1.34e-20	89.4
MS.gene52323.t1	MTR_1g022455	39.496	119	69	1	113	231	262	377	2.35e-18	83.2
MS.gene52323.t1	MTR_8g077040	34.328	134	80	3	106	233	239	370	1.23e-17	80.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52323.t1	AT1G19640	37.097	124	73	2	113	231	264	387	5.85e-21	90.5
MS.gene52323.t1	AT3G11480	36.508	126	73	1	106	231	260	378	4.16e-16	76.6
MS.gene52323.t1	AT5G66430	39.091	110	63	2	106	213	228	335	2.47e-15	74.3
MS.gene52323.t1	AT5G04370	37.705	122	65	4	113	231	295	408	2.42e-14	72.0
MS.gene52323.t1	AT5G04370	37.705	122	65	4	113	231	276	389	2.43e-14	71.6
MS.gene52323.t1	AT5G04370	37.705	122	65	4	113	231	281	394	3.19e-14	71.6
MS.gene52323.t1	AT5G38020	37.273	110	58	4	113	213	241	348	2.12e-12	65.9
MS.gene52323.t1	AT5G38020	37.273	110	58	4	113	213	202	309	2.47e-12	65.5
MS.gene52323.t1	AT4G36470	30.252	119	76	1	113	231	258	369	2.87e-11	62.8

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Find 60 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCTTCAATGTTTGAA+GGG	0.485869	7.3:+24237278	None:intergenic
AAACAAGTGATTGAGGCAGA+AGG	0.616874	7.3:-24237309	MS.gene52323:CDS
AACGGAGATGCTGAAGAAGG+TGG	0.705574	7.3:-24240319	MS.gene52323:CDS
AAGAAGGTGGTGCGGAGACA+AGG	0.551729	7.3:-24240306	MS.gene52323:CDS
AAGCACAACCACCGCCAGGA+AGG	0.582413	7.3:-24240552	MS.gene52323:CDS
AATCAACAATATCTTCTTGT+AGG	0.299467	7.3:+24237235	None:intergenic
AATTCATAGCCAAGTATCAC+AGG	0.487711	7.3:-24237185	MS.gene52323:CDS
ACAATCCAACAGCGGCAGCT+TGG	0.532660	7.3:-24240601	MS.gene52323:CDS
ACAGAAGCACAACCACCGCC+AGG	0.578249	7.3:-24240556	MS.gene52323:CDS
ACATCTTGAGTGGTTGGATT+TGG	0.286217	7.3:-24240255	MS.gene52323:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACCCAAAAAAATGGGT+TGG	+	chr7.3:24240087-24240106	None:intergenic	30.0%
AACCCAAAACCAAATCAAAT+AGG	-	chr7.3:24239456-24239475	MS.gene52323:intron	30.0%
AAGTAAGGACTAAACTTACA+AGG	-	chr7.3:24238779-24238798	MS.gene52323:intron	30.0%
AATTAGGGACTAAACTTACA+AGG	-	chr7.3:24239321-24239340	MS.gene52323:intron	30.0%
ACCAAACCCTACAAATTATA+AGG	+	chr7.3:24240333-24240352	None:intergenic	30.0%
ACCCAAAAAACCCAAAAAAA+TGG	+	chr7.3:24240092-24240111	None:intergenic	30.0%
ACCCAAAACCAAATCAAATA+GGG	-	chr7.3:24239457-24239476	MS.gene52323:intron	30.0%
ATCAACATTATTGGGTAAGT+GGG	-	chr7.3:24239976-24239995	MS.gene52323:intron	30.0%
CAAGATTAGAACACTATGAA+AGG	-	chr7.3:24239047-24239066	MS.gene52323:intron	30.0%
CCACTAACTACAACTAATAA+GGG	+	chr7.3:24237790-24237809	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	24237035	24240710	24237035	ID=MS.gene52323
chr7.3	mRNA	24237035	24240710	24237035	ID=MS.gene52323.t1;Parent=MS.gene52323
chr7.3	exon	24240467	24240710	24240467	ID=MS.gene52323.t1.exon1;Parent=MS.gene52323.t1
chr7.3	CDS	24240467	24240710	24240467	ID=cds.MS.gene52323.t1;Parent=MS.gene52323.t1
chr7.3	exon	24240252	24240343	24240252	ID=MS.gene52323.t1.exon2;Parent=MS.gene52323.t1
chr7.3	CDS	24240252	24240343	24240252	ID=cds.MS.gene52323.t1;Parent=MS.gene52323.t1
chr7.3	exon	24237035	24237400	24237035	ID=MS.gene52323.t1.exon3;Parent=MS.gene52323.t1
chr7.3	CDS	24237035	24237400	24237035	ID=cds.MS.gene52323.t1;Parent=MS.gene52323.t1

Gene Sequence

>MS.gene52323

ATGCGAGACCGAACACCCAACAGCAGAGCGCAGACTGCTGTTGACGCTGCTACAACCACCGCAAGGCCGAAACGCGACCACCAAAGCACAATCCAACAGCGGCAGCTTGGTGACAGTCAGGAACAGAACAAAACAGAAGCACAACCACCGCCAGGAAGGAGGAAAACCAACACAGATCTGCACAGATCTACCACCACCTCACACCACCGGACCACCACCCCCCACCACCGAAACCACCTAATCCGTGACCATCTCACCTCCTCCAACTAGATCTGAAAACAGATCAGCCGCAACAGAAACTGGACATGAAACCGGCAACGAAACGAAACGCGAATGGAGCAAAACGAAGCCAAACCGGAGTGAACAGTGAACGGAGATGCTGAAGAAGGTGGTGCGGAGACAAGGTCTCATCGCACCACCGCTGCTAGAATCTACATCTTGAGTGGTTGGATTTGGATTGTGGGAAGAAAAACGAAGGAGGAAAGGGGGAGAAGTGTAGAGAGAAGTCAGAGGTTCAAAATGTTTAGAGAGAGAAAGCGTTTATGGCATTTTATAATTATTATTGTTTTTACAATTTTATTTTTTAAAAGAGTGAGTTAGTGTATGTTTTCAACAAGTATTTAATGCTGATTGAAGAAAAAGATACTCCCTCCATCTCTAAATTATAGTCGTTTAAGGTTTGTGCACAGTTATTAAGTAAATGATTAGTTCGTTTGATTTTGATAGTTAAATTAGTGTCATTTACTAAAACACCCTTATTAGTTGTAGTTAGTGGAGTAGTTAAGTTGGATGAAATTCAATAAATAAGGGTATATTAATGGAAAAAAATAATAAATGTTGCATTGGTATTATAAAGTGACAATTATTTTGAGAAAAAGAAAAAATGGTAAAGTGACAATTATTGTGAGACAGAGGGAGTATAAAATAAATATGGATATGTTGGTAAAAAATTAATTAATGTACTTGAAAATACCAAAGATATCTTATAAAAAGAGACAATTTTTTTTACTAAAAATGTCTTATATTTAGGGACGAAGGCAGTATATCTTATCATATTTGTTAAGAATTACAGTTGATAAATTTTGTGTAAAATAAGTTGATTTTTAATGTTTTAATATGTTTTGTCAAAAAAAAAATGTTTTAATATGTTGATTATACTATTCCCGATATAAAGTTTACTATAATGGCTGTAATAATTTCTTTCGTCATATTCCCCTTAAAAAGGAAAAAAAAAAAACTTATCCTACCTAACTTTCAAAGTAGGGTTAATTATGTTTTTGGTCCCTACAAAATTGCAATCTTGTAAGTTTAGTCCTTACTTAATTTTAATAGCATTTTTAATCCCTACAAAAAAAAATTTACTTATAATTTTAGTCCCTGCTAAAATAAATTTTGTTTAATTATCCTTAAACTCTTAAATTTTTTAACGATTCTTTTTATACAAGTTTAGAACACTATGAACGGTTCATTTACTAAAATCTATAATTTTTTAACATGAAATAAATTAAATATGAATTTTTTAAAACGACAAAAGTTTAAGATATAAGTAACAAAAATATGGACGTAGAAATCAAATTTTTGCGATATTTTTTTCGGAGGACCTTTTAATAACGTTCTTAACACGCCTGTAAAAAATTGTTGAAAAACTTAAGAGTTTAAGCATAAATTAAACAAATTTGGATTGAGTAAGGACTAATATTGAGTGCAGAAGTTTTTTGTAGGGATTAAAAATGCTATTAAAATTAAGTAAGGACTAAACTTACAAGGTCGCCATTTTGTAGGGACCAAAAACATAATTAACCCTTCAAAGTAATAACTATCATTTTTTTATAAGGGTTAATTATGTTTCTAGTCCCTATAAAATAGCGACCTTGTAAGTTTAGTCCCTACTTAATTTTAATAGCATTTTTAGTCCCTATAAAAAAAAATTTACTTATAATTTTAGTCCCTGCTAAAACAAAGTTTGATTAATTATCCTTAAACTCTTAAATTTTTGAACGATTTTTTTGAGACAAGATTAGAACACTATGAAAGGTTCGTTTACTAAAATTTAGAATTTTCTGACATGAAATGAATTAAATATGAATTTTTTAAAACGACAAAAGTTAAAGATAAAAAGTAATAAAATTTGGATGTAGAAATCAAATTTTGCGATAATTTTTTGGGACGAACTTTTAGTAATGTTCTAAACATGTCTGCAAAAAATTGTTCAAAAATTTAAGAGTTTAAGCATAAATTAAACAAATTTGAATTGAGTAGGGACTAATACTGAGTGCAGAAAAACAAAATTAGGGACTAAACTTACAAGGTCGCTATTTTATAGGGGCTAGAAACATAATTAACCCTTTTTATAATGACTATAATAACTTCTGTCATTATATTTAGGGGTGTTCGTGGGTGGGTTTGGGTTGGGTTTGGCCAAACCCAAAACCAAATCAAATAGGGTACTCCGGTTTGGGTAAGGTAAAATAACCACTTGCTATACTATTGGGTGGGTTTGGACAAACCCACTAATTTTTGGGTTGGGTTGGATTGGGTAATGGGTTACCCAATTTATTTTTCTATTTTTTTAATATTAAATGATTAAATGACAAGTCTTCGTAATTTTGTTTTAAAATAGTATTCTACTTTTTAATTTTCTTAAAAAAAATGTTTAACTTATTTTATTATAATTTATGCATCATAGAATATCAAATAATAAACTCCATCATAAAATACCTGCAACAAACTAAAGTTGCATGACATAAAATTGTATTAGTATCAAAATAACCAAAATGTGCAACATATTAATTTGTAACTCTAGTATGTTTTGATTTTCAATATATAGGGTACAATTTGCATGTTTTGGAAATATTACTTTCTTTTTTTTTTTTTGGTACAACAATTTGTATGCTTTGGAAATGTAACTTTCTTCTACCCTATGAAAATAAAGATAAAAAATATCAACATTATTGGGTAAGTGGGTTTTTTGGGTTTGAGTCTGATTTTACCTGAAACCCATTTATTTTTATGGGTTTTCCATTTTTAGAAACCATACCCACCCAATTACCCAACCCATTTTTTTGGGTTTTTTGGGTGGGTTTGACCAGGTTTTTTGGGTTGACCCAACCCATGAACACCCCTAATTATATTCCCAGATTTTGTGTCATTTCTATATTTTTGTTACGATAGTATATGTAATTATTGATCAACATATTACATTTTTTTTGGTGGTATCAACATATTACATGAGACGACGTAGATAAAAAAAATAAACCTTGGCTTTAGCTTGTGATTTGCCTTTTGTATTAAGATTCCTTATAATTTGTAGGGTTTGGTTGAAGAAGCAAAATTGGACTTGTTTAATTTGCCTGTATATCATCCTACTATAGAGGAAGTGAAACAAGTGATTGAGGCAGAAGGATCTTTTACCCTTCAAACATTGAAGACTTTTAATATCGGTTGGGATGCAAACCTACAAGAAGATATTGTTGATTATGTTGTCGATAGCAAAATGAGAGGGGAATTCATAGCCAAGTATCACAGGGCTGTTTATGAACCTCTTTTCATAGCCGGGTTTGGAGAAAACATCATGGATGAATTGTTCTCAAGGTTTGCAAATCTGGTTGCACAACTCATTGAGATAGAGACATTGGAGTTTACTAATATTGTATTGTTCATGACCAAGAATCCTTAA

Protein sequence

>MS.gene52323.t1

MRDRTPNSRAQTAVDAATTTARPKRDHQSTIQQRQLGDSQEQNKTEAQPPPGRRKTNTDLHRSTTTSHHRTTTPHHRNHLILNGDAEEGGAETRSHRTTAARIYILSGWIWIGLVEEAKLDLFNLPVYHPTIEEVKQVIEAEGSFTLQTLKTFNIGWDANLQEDIVDYVVDSKMRGEFIAKYHRAVYEPLFIAGFGENIMDELFSRFANLVAQLIEIETLEFTNIVLFMTKNP