AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52552

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52552.t1 MTR_8g102150 97.468 316 8 0 1 316 1 316 0.0 644
MS.gene52552.t1 MTR_8g015220 74.448 317 68 3 1 316 1 305 4.08e-175 487
MS.gene52552.t1 MTR_8g015220 72.598 281 64 3 1 280 1 269 3.63e-150 422
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52552.t1 AT2G19800 77.287 317 71 1 1 316 1 317 0.0 520
MS.gene52552.t1 AT4G26260 78.302 318 67 1 1 316 1 318 0.0 514
MS.gene52552.t1 AT4G26260 78.438 320 62 3 1 316 1 317 0.0 511
MS.gene52552.t1 AT5G56640 77.517 298 65 2 21 316 17 314 1.22e-173 483
MS.gene52552.t1 AT5G56640 80.000 280 55 1 38 316 5 284 1.92e-170 474
MS.gene52552.t1 AT1G14520 70.807 322 77 3 1 316 1 311 2.40e-168 470
MS.gene52552.t1 AT1G14520 70.807 322 77 3 1 316 1 311 2.40e-168 470
MS.gene52552.t1 AT1G14520 71.562 320 76 4 1 316 1 309 6.91e-168 469
MS.gene52552.t1 AT1G14520 70.701 314 75 3 1 308 1 303 3.37e-161 453

Find 64 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTTCTGCTTCCTAAATT+TGG 0.129202 5.2:-38737900 MS.gene52552:CDS
TGAGGTAATTCACCAAATTT+AGG 0.223539 5.2:+38737888 None:intergenic
TGGCCAAATGAATTGATTTC+AGG 0.232542 5.2:+38738639 None:intergenic
ACGAAAATGCTTACGGTAAA+AGG 0.245636 5.2:+38737194 None:intergenic
ACAAAGCAGAAATGAGTATA+TGG 0.246822 5.2:-38738278 MS.gene52552:CDS
TAAGCAGGGGATTTGATATC+AGG 0.289677 5.2:+38737569 None:intergenic
CATTTGACTGCTCTCATTCA+TGG 0.300205 5.2:-38738129 MS.gene52552:intron
TCAATAAGTGATAGATAATA+TGG 0.308416 5.2:+38736860 None:intergenic
GAAGAAAGTGAAAGGCAAAA+AGG 0.312701 5.2:-38738488 MS.gene52552:CDS
ATTCATTTGGCCATGCCTTC+AGG 0.318144 5.2:-38738629 MS.gene52552:intron
GTGCAGGTTGCTAAGGAAAA+TGG 0.342888 5.2:-38737261 MS.gene52552:intron
TGCTTACAAAATCATATGTT+TGG 0.344683 5.2:+38738432 None:intergenic
TATCACCATCTAAGCTTTGC+TGG 0.359991 5.2:+38736735 None:intergenic
ATTTCCCAGCAAAGCTTAGA+TGG 0.363074 5.2:-38736740 MS.gene52552:CDS
GCCCCTGAAATCAATTCATT+TGG 0.364619 5.2:-38738642 MS.gene52552:CDS
ATTTGTGGTTCATCCAAATC+AGG 0.380292 5.2:+38738213 None:intergenic
GTGTCTGCTGCAGTATTTCA+AGG 0.386731 5.2:-38737597 MS.gene52552:intron
GGCTCCACTTTGCCAAATGC+TGG 0.389898 5.2:-38737240 MS.gene52552:CDS
ATTGTCTTGCTTCAGATCTT+GGG 0.404763 5.2:-38737926 MS.gene52552:intron
AAGATTATCCTAATGAAGAT+TGG 0.408744 5.2:-38738155 MS.gene52552:CDS
GGATGAAAGTGATCCTGATT+TGG 0.408862 5.2:-38738226 MS.gene52552:CDS
ATTTGGTGAATTACCTCAAT+GGG 0.414194 5.2:-38737883 MS.gene52552:CDS
ATCAATGAACTTGTTCTTGA+TGG 0.416085 5.2:-38738708 MS.gene52552:CDS
ATAATGAACAATCCAGCATT+TGG 0.417188 5.2:+38737228 None:intergenic
AAATGTAACCAATCTTCATT+AGG 0.423631 5.2:+38738147 None:intergenic
GTCCACATGCTCAACAAGTA+TGG 0.432050 5.2:+38738861 None:intergenic
TTACCTTGCAGCTTTGCATA+AGG 0.435788 5.2:-38737107 MS.gene52552:intron
TGCAGCAAATGTTGAATTTG+TGG 0.449869 5.2:+38738198 None:intergenic
TTCATCAAAGGCACAACCTA+AGG 0.469206 5.2:+38737726 None:intergenic
GCAGGAGACACATTTCCCTT+AGG 0.472594 5.2:-38737742 MS.gene52552:intron
AATTTGGTGAATTACCTCAA+TGG 0.484943 5.2:-38737884 MS.gene52552:CDS
ATCTAATGTGCAGGTTGCTA+AGG 0.496415 5.2:-38737268 MS.gene52552:intron
CTTGTTGAGCATGTGGACTT+TGG 0.499354 5.2:-38738856 MS.gene52552:intron
TGAATTGCTGAATGAGGTTG+TGG 0.499420 5.2:-38738247 MS.gene52552:CDS
GGCCAAATGAATTGATTTCA+GGG 0.508703 5.2:+38738640 None:intergenic
TAATGTAGGTGAAGAAAATG+AGG 0.510914 5.2:-38738320 MS.gene52552:intron
ACATGATGATTATATGTGTA+TGG 0.511397 5.2:-38737483 MS.gene52552:intron
TACAAACATACTTAAATATG+TGG 0.517088 5.2:+38737029 None:intergenic
TAGAAAATGTGATGATGTCA+TGG 0.518307 5.2:-38737508 MS.gene52552:CDS
TTACCTCAATGGGCTGTTGT+TGG 0.522851 5.2:-38737873 MS.gene52552:intron
CAAAGCAGAAATGAGTATAT+GGG 0.524713 5.2:-38738277 MS.gene52552:CDS
AATGAACTTGTTCTTGATGG+TGG 0.532274 5.2:-38738705 MS.gene52552:CDS
CTTGCAGCTTTGCATAAGGA+AGG 0.535318 5.2:-38737103 MS.gene52552:intron
CAATCCAGCATTTGGCAAAG+TGG 0.546474 5.2:+38737236 None:intergenic
ATCACCATCTAAGCTTTGCT+GGG 0.549776 5.2:+38736736 None:intergenic
TTATCTATCACTTATTGAGA+AGG 0.553529 5.2:-38736855 MS.gene52552:intron
AAGCAGGGGATTTGATATCA+GGG 0.566312 5.2:+38737570 None:intergenic
GGGATCTACAATGAAGGGTG+TGG 0.566729 5.2:-38737533 MS.gene52552:CDS
GTGAACATTTGATTCATCAA+AGG 0.571274 5.2:+38737714 None:intergenic
AAAATGGGATCTACAATGAA+GGG 0.582573 5.2:-38737538 MS.gene52552:CDS
ATTATGATGAAGAAAGTGAA+AGG 0.589249 5.2:-38738496 MS.gene52552:CDS
TCATCAAAGGCACAACCTAA+GGG 0.592008 5.2:+38737727 None:intergenic
TTGGAAATAACCTGAAGGCA+TGG 0.600865 5.2:+38738619 None:intergenic
ATGTTGTGAATTGCTGAATG+AGG 0.601153 5.2:-38738253 MS.gene52552:CDS
AAGGGGTTGAGGAATTCTAT+CGG 0.610137 5.2:-38738469 MS.gene52552:CDS
TGATCTCTACAGCAAAAGCA+AGG 0.624334 5.2:-38736909 MS.gene52552:CDS
GCCAAATGAATTGATTTCAG+GGG 0.627992 5.2:+38738641 None:intergenic
GACCATACTTGTTGAGCATG+TGG 0.630105 5.2:-38738863 MS.gene52552:CDS
AATGTAGGTGAAGAAAATGA+GGG 0.632828 5.2:-38738319 MS.gene52552:intron
TAACCAACAACAGCCCATTG+AGG 0.638571 5.2:+38737870 None:intergenic
AGAAAATGTGATGATGTCAT+GGG 0.639421 5.2:-38737507 MS.gene52552:CDS
TGAATCAAATGTTCACCACA+AGG 0.666189 5.2:-38737707 MS.gene52552:intron
GTAGGTGAAGAAAATGAGGG+AGG 0.669919 5.2:-38738316 MS.gene52552:intron
GAAAATGTGATGATGTCATG+GGG 0.759969 5.2:-38737506 MS.gene52552:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACAATGAAATAGAAT+TGG + chr5.2:38737005-38737024 None:intergenic 15.0%
!! TTAGTAATTATTATGTAATG+AGG + chr5.2:38738648-38738667 None:intergenic 15.0%
!!! TTAATTAACATTTTGCAAAT+TGG + chr5.2:38737265-38737284 None:intergenic 15.0%
!! AAAGATCATTTACAATTTCA+AGG - chr5.2:38737557-38737576 MS.gene52552:CDS 20.0%
!! AGATATTTATAATTACCTTG+TGG + chr5.2:38737913-38737932 None:intergenic 20.0%
!! ATCATATGAAAATAAGTGTA+AGG + chr5.2:38737767-38737786 None:intergenic 20.0%
!! TACAAACATACTTAAATATG+TGG + chr5.2:38738576-38738595 None:intergenic 20.0%
!! TCAATAAGTGATAGATAATA+TGG + chr5.2:38738745-38738764 None:intergenic 20.0%
!! TGCAAAATGTTAATTAATGT+AGG - chr5.2:38737268-38737287 MS.gene52552:intron 20.0%
!!! AATTCAACATTTTAACTGAA+TGG - chr5.2:38737823-38737842 MS.gene52552:intron 20.0%
!!! CACATTTTTATCATCAAATT+GGG + chr5.2:38736862-38736881 None:intergenic 20.0%
!!! TTGTGTTACTTATTTTGTTT+TGG - chr5.2:38738824-38738843 MS.gene52552:intron 20.0%
! AAATGTAACCAATCTTCATT+AGG + chr5.2:38737458-38737477 None:intergenic 25.0%
! AAGATTATCCTAATGAAGAT+TGG - chr5.2:38737447-38737466 MS.gene52552:intron 25.0%
! ACATGATGATTATATGTGTA+TGG - chr5.2:38738119-38738138 MS.gene52552:intron 25.0%
! ACATGATGATTGGAATTATT+TGG - chr5.2:38737078-38737097 MS.gene52552:CDS 25.0%
! AGAAATTAACACATGATGAT+TGG - chr5.2:38737068-38737087 MS.gene52552:CDS 25.0%
! AGTAACACAAAAAAACAATG+AGG + chr5.2:38738814-38738833 None:intergenic 25.0%
! ATCGTGTGATGAATTATTTA+CGG + chr5.2:38738150-38738169 None:intergenic 25.0%
! ATTATGATGAAGAAAGTGAA+AGG - chr5.2:38737106-38737125 MS.gene52552:intron 25.0%
! CATAATAACGAAAATGCTTA+CGG + chr5.2:38738418-38738437 None:intergenic 25.0%
! CTGCTTATAACACTAAAAAT+GGG - chr5.2:38738049-38738068 MS.gene52552:intron 25.0%
! GTAACACAAAAAAACAATGA+GGG + chr5.2:38738813-38738832 None:intergenic 25.0%
! TGATGATAAAAATGTGCATT+CGG - chr5.2:38736866-38736885 MS.gene52552:CDS 25.0%
! TGCTTACAAAATCATATGTT+TGG + chr5.2:38737173-38737192 None:intergenic 25.0%
! TTATCTATCACTTATTGAGA+AGG - chr5.2:38738747-38738766 MS.gene52552:CDS 25.0%
!! AAATTTTCTGTACAGAGAAT+GGG + chr5.2:38738452-38738471 None:intergenic 25.0%
!! CATTTTGCAAATTGGAATTT+TGG + chr5.2:38737257-38737276 None:intergenic 25.0%
!! GCACATTTTTATCATCAAAT+TGG + chr5.2:38736863-38736882 None:intergenic 25.0%
!! TAAATTTTCTGTACAGAGAA+TGG + chr5.2:38738453-38738472 None:intergenic 25.0%
!! TTTTACTGAATCGTTTGAAT+TGG - chr5.2:38738190-38738209 MS.gene52552:CDS 25.0%
!!! AAGATTTTGAGAATTTGAAG+TGG - chr5.2:38738548-38738567 MS.gene52552:intron 25.0%
!!! ATAAAGTATCGTTGAATCAT+CGG + chr5.2:38738293-38738312 None:intergenic 25.0%
!!! ATTTTTAGTGTTATAAGCAG+GGG + chr5.2:38738049-38738068 None:intergenic 25.0%
!!! CATTTTTAGTGTTATAAGCA+GGG + chr5.2:38738050-38738069 None:intergenic 25.0%
!!! TGTAAATGATCTTTTTTGTC+AGG + chr5.2:38737551-38737570 None:intergenic 25.0%
AAAAATGGGATCTACAATGA+AGG - chr5.2:38738063-38738082 MS.gene52552:intron 30.0%
AAAATGGGATCTACAATGAA+GGG - chr5.2:38738064-38738083 MS.gene52552:intron 30.0%
AAGAAAGTGAAAGGCAAAAA+GGG - chr5.2:38737115-38737134 MS.gene52552:intron 30.0%
AATGTAGGTGAAGAAAATGA+GGG - chr5.2:38737283-38737302 MS.gene52552:intron 30.0%
ACAAAGCAGAAATGAGTATA+TGG - chr5.2:38737324-38737343 MS.gene52552:intron 30.0%
ACCTTTCTAAATGGATATCA+TGG - chr5.2:38737621-38737640 MS.gene52552:intron 30.0%
ATAACAAGCCACATTATTAC+AGG - chr5.2:38736834-38736853 MS.gene52552:intron 30.0%
ATAATGAACAATCCAGCATT+TGG + chr5.2:38738377-38738396 None:intergenic 30.0%
ATGGTTAATGACATATTTGC+AGG - chr5.2:38737842-38737861 MS.gene52552:intron 30.0%
ATTCTTCTGCTTCCTAAATT+TGG - chr5.2:38737702-38737721 MS.gene52552:intron 30.0%
CAAAGCAGAAATGAGTATAT+GGG - chr5.2:38737325-38737344 MS.gene52552:intron 30.0%
CCTGCTTATAACACTAAAAA+TGG - chr5.2:38738048-38738067 MS.gene52552:intron 30.0%
CCTTTCTAAATGGATATCAT+GGG - chr5.2:38737622-38737641 MS.gene52552:intron 30.0%
CTTTCTAAATGGATATCATG+GGG - chr5.2:38737623-38737642 MS.gene52552:intron 30.0%
GAATCATCGGAAAATTGATT+CGG + chr5.2:38738280-38738299 None:intergenic 30.0%
GGAACAAAAAAAAACATGAC+CGG + chr5.2:38738792-38738811 None:intergenic 30.0%
GTGAACATTTGATTCATCAA+AGG + chr5.2:38737891-38737910 None:intergenic 30.0%
TAACAAGCCACATTATTACA+GGG - chr5.2:38736835-38736854 MS.gene52552:intron 30.0%
TAACACCAATCTTTATGAAC+CGG - chr5.2:38738770-38738789 MS.gene52552:intron 30.0%
TAATGTAGGTGAAGAAAATG+AGG - chr5.2:38737282-38737301 MS.gene52552:intron 30.0%
TAGAATTGGAAATAACCTGA+AGG + chr5.2:38736991-38737010 None:intergenic 30.0%
TGAGGTAATTCACCAAATTT+AGG + chr5.2:38737717-38737736 None:intergenic 30.0%
TTTGTGTCTATTTCACATGA+AGG - chr5.2:38737217-38737236 MS.gene52552:CDS 30.0%
! AATTTGGTGAATTACCTCAA+TGG - chr5.2:38737718-38737737 MS.gene52552:CDS 30.0%
! AATTTTCTGTACAGAGAATG+GGG + chr5.2:38738451-38738470 None:intergenic 30.0%
! AGAAAATGTGATGATGTCAT+GGG - chr5.2:38738095-38738114 MS.gene52552:intron 30.0%
! ATCAATGAACTTGTTCTTGA+TGG - chr5.2:38736894-38736913 MS.gene52552:CDS 30.0%
! ATGTCAGACTTGTTCAAATT+AGG + chr5.2:38737601-38737620 None:intergenic 30.0%
! ATTTGGTGAATTACCTCAAT+GGG - chr5.2:38737719-38737738 MS.gene52552:CDS 30.0%
! GACTTGTTCAAATTAGGATA+TGG + chr5.2:38737595-38737614 None:intergenic 30.0%
! TAGAAAATGTGATGATGTCA+TGG - chr5.2:38738094-38738113 MS.gene52552:intron 30.0%
!! AAAATTGATTCGGATTTCCT+CGG + chr5.2:38738270-38738289 None:intergenic 30.0%
!! AATGTGGCTTGTTATATGAT+GGG + chr5.2:38736829-38736848 None:intergenic 30.0%
!! TAATGTGGCTTGTTATATGA+TGG + chr5.2:38736830-38736849 None:intergenic 30.0%
!!! CCATTTTTAGTGTTATAAGC+AGG + chr5.2:38738051-38738070 None:intergenic 30.0%
!!! GCATTTTGAGAAGCATTTTT+TGG + chr5.2:38736933-38736952 None:intergenic 30.0%
ACGAAAATGCTTACGGTAAA+AGG + chr5.2:38738411-38738430 None:intergenic 35.0%
AGAAAGTGAAAGGCAAAAAG+GGG - chr5.2:38737116-38737135 MS.gene52552:intron 35.0%
ATGTTGTGAATTGCTGAATG+AGG - chr5.2:38737349-38737368 MS.gene52552:intron 35.0%
ATTGTCTTGCTTCAGATCTT+GGG - chr5.2:38737676-38737695 MS.gene52552:intron 35.0%
ATTTGTGGTTCATCCAAATC+AGG + chr5.2:38737392-38737411 None:intergenic 35.0%
CCCATGATATCCATTTAGAA+AGG + chr5.2:38737625-38737644 None:intergenic 35.0%
GAAGAAAGTGAAAGGCAAAA+AGG - chr5.2:38737114-38737133 MS.gene52552:intron 35.0%
GATGATTGGAATTATTTGGC+AGG - chr5.2:38737082-38737101 MS.gene52552:CDS 35.0%
GTCTGACATACCTTTCTAAA+TGG - chr5.2:38737612-38737631 MS.gene52552:intron 35.0%
TATTGTCTTGCTTCAGATCT+TGG - chr5.2:38737675-38737694 MS.gene52552:intron 35.0%
TGAATCAAATGTTCACCACA+AGG - chr5.2:38737895-38737914 MS.gene52552:CDS 35.0%
TGCAGCAAATGTTGAATTTG+TGG + chr5.2:38737407-38737426 None:intergenic 35.0%
! AATGAACTTGTTCTTGATGG+TGG - chr5.2:38736897-38736916 MS.gene52552:CDS 35.0%
! GAAAATGTGATGATGTCATG+GGG - chr5.2:38738096-38738115 MS.gene52552:intron 35.0%
! GCCAAATGAATTGATTTCAG+GGG + chr5.2:38736964-38736983 None:intergenic 35.0%
! GGCCAAATGAATTGATTTCA+GGG + chr5.2:38736965-38736984 None:intergenic 35.0%
! TGGCCAAATGAATTGATTTC+AGG + chr5.2:38736966-38736985 None:intergenic 35.0%
!!! TGAGAAGCATTTTTTGGTAG+AGG + chr5.2:38736927-38736946 None:intergenic 35.0%
AAGCAGGGGATTTGATATCA+GGG + chr5.2:38738035-38738054 None:intergenic 40.0%
AAGGGGTTGAGGAATTCTAT+CGG - chr5.2:38737133-38737152 MS.gene52552:intron 40.0%
ACATTGTGCATCTAATGTGC+AGG - chr5.2:38738325-38738344 MS.gene52552:intron 40.0%
ATCTAATGTGCAGGTTGCTA+AGG - chr5.2:38738334-38738353 MS.gene52552:intron 40.0%
ATTGGGACCCTGTAATAATG+TGG + chr5.2:38736845-38736864 None:intergenic 40.0%
ATTTCCCAGCAAAGCTTAGA+TGG - chr5.2:38738862-38738881 MS.gene52552:CDS 40.0%
CATTTGACTGCTCTCATTCA+TGG - chr5.2:38737473-38737492 MS.gene52552:intron 40.0%
GCCCCTGAAATCAATTCATT+TGG - chr5.2:38736960-38736979 MS.gene52552:intron 40.0%
GGATGAAAGTGATCCTGATT+TGG - chr5.2:38737376-38737395 MS.gene52552:intron 40.0%
TAAGCAGGGGATTTGATATC+AGG + chr5.2:38738036-38738055 None:intergenic 40.0%
TGAATTGCTGAATGAGGTTG+TGG - chr5.2:38737355-38737374 MS.gene52552:intron 40.0%
TGATCTCTACAGCAAAAGCA+AGG - chr5.2:38738693-38738712 MS.gene52552:CDS 40.0%
TTACCTTGCAGCTTTGCATA+AGG - chr5.2:38738495-38738514 MS.gene52552:CDS 40.0%
TTATGCAAAGCTGCAAGGTA+AGG + chr5.2:38738496-38738515 None:intergenic 40.0%
TTGGAAATAACCTGAAGGCA+TGG + chr5.2:38736986-38737005 None:intergenic 40.0%
! CATGACCGGTTCATAAAGAT+TGG + chr5.2:38738778-38738797 None:intergenic 40.0%
! TCATCAAAGGCACAACCTAA+GGG + chr5.2:38737878-38737897 None:intergenic 40.0%
! TTCATCAAAGGCACAACCTA+AGG + chr5.2:38737879-38737898 None:intergenic 40.0%
ATTCATTTGGCCATGCCTTC+AGG - chr5.2:38736973-38736992 MS.gene52552:intron 45.0%
CAATCCAGCATTTGGCAAAG+TGG + chr5.2:38738369-38738388 None:intergenic 45.0%
CTGCAGCAGACACAAGATTT+AGG + chr5.2:38737998-38738017 None:intergenic 45.0%
CTTCCTTATGCAAAGCTGCA+AGG + chr5.2:38738501-38738520 None:intergenic 45.0%
CTTGCAGCTTTGCATAAGGA+AGG - chr5.2:38738499-38738518 MS.gene52552:CDS 45.0%
CTTGTTGAGCATGTGGACTT+TGG - chr5.2:38736746-38736765 MS.gene52552:intron 45.0%
GTAGGTGAAGAAAATGAGGG+AGG - chr5.2:38737286-38737305 MS.gene52552:intron 45.0%
GTCCACATGCTCAACAAGTA+TGG + chr5.2:38736744-38736763 None:intergenic 45.0%
GTGCAGGTTGCTAAGGAAAA+TGG - chr5.2:38738341-38738360 MS.gene52552:intron 45.0%
GTGTCTGCTGCAGTATTTCA+AGG - chr5.2:38738005-38738024 MS.gene52552:intron 45.0%
TAACCAACAACAGCCCATTG+AGG + chr5.2:38737735-38737754 None:intergenic 45.0%
TGAAAGGCAAAAAGGGGTTG+AGG - chr5.2:38737122-38737141 MS.gene52552:intron 45.0%
! GACCATACTTGTTGAGCATG+TGG - chr5.2:38736739-38736758 MS.gene52552:CDS 45.0%
!! TTACCTCAATGGGCTGTTGT+TGG - chr5.2:38737729-38737748 MS.gene52552:CDS 45.0%
!! AAATAATATAAATATTGAAA+AGG + chr5.2:38737509-38737528 None:intergenic 5.0%
!! TTTCAAAAAAAATAAAATTA+TGG + chr5.2:38737041-38737060 None:intergenic 5.0%
GCAGGAGACACATTTCCCTT+AGG - chr5.2:38737860-38737879 MS.gene52552:intron 50.0%
GGGATCTACAATGAAGGGTG+TGG - chr5.2:38738069-38738088 MS.gene52552:intron 50.0%
GGCTCCACTTTGCCAAATGC+TGG - chr5.2:38738362-38738381 MS.gene52552:intron 55.0%
! GTGTGATGTGCTAGCTTCCG+AGG - chr5.2:38738250-38738269 MS.gene52552:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 38736737 38738887 38736737 ID=MS.gene52552
chr5.2 mRNA 38736737 38738887 38736737 ID=MS.gene52552.t1;Parent=MS.gene52552
chr5.2 exon 38738857 38738887 38738857 ID=MS.gene52552.t1.exon1;Parent=MS.gene52552.t1
chr5.2 CDS 38738857 38738887 38738857 ID=cds.MS.gene52552.t1;Parent=MS.gene52552.t1
chr5.2 exon 38738630 38738768 38738630 ID=MS.gene52552.t1.exon2;Parent=MS.gene52552.t1
chr5.2 CDS 38738630 38738768 38738630 ID=cds.MS.gene52552.t1;Parent=MS.gene52552.t1
chr5.2 exon 38738439 38738520 38738439 ID=MS.gene52552.t1.exon3;Parent=MS.gene52552.t1
chr5.2 CDS 38738439 38738520 38738439 ID=cds.MS.gene52552.t1;Parent=MS.gene52552.t1
chr5.2 exon 38738130 38738334 38738130 ID=MS.gene52552.t1.exon4;Parent=MS.gene52552.t1
chr5.2 CDS 38738130 38738334 38738130 ID=cds.MS.gene52552.t1;Parent=MS.gene52552.t1
chr5.2 exon 38737874 38737933 38737874 ID=MS.gene52552.t1.exon5;Parent=MS.gene52552.t1
chr5.2 CDS 38737874 38737933 38737874 ID=cds.MS.gene52552.t1;Parent=MS.gene52552.t1
chr5.2 exon 38737708 38737760 38737708 ID=MS.gene52552.t1.exon6;Parent=MS.gene52552.t1
chr5.2 CDS 38737708 38737760 38737708 ID=cds.MS.gene52552.t1;Parent=MS.gene52552.t1
chr5.2 exon 38737484 38737606 38737484 ID=MS.gene52552.t1.exon7;Parent=MS.gene52552.t1
chr5.2 CDS 38737484 38737606 38737484 ID=cds.MS.gene52552.t1;Parent=MS.gene52552.t1
chr5.2 exon 38737208 38737277 38737208 ID=MS.gene52552.t1.exon8;Parent=MS.gene52552.t1
chr5.2 CDS 38737208 38737277 38737208 ID=cds.MS.gene52552.t1;Parent=MS.gene52552.t1
chr5.2 exon 38737040 38737118 38737040 ID=MS.gene52552.t1.exon9;Parent=MS.gene52552.t1
chr5.2 CDS 38737040 38737118 38737040 ID=cds.MS.gene52552.t1;Parent=MS.gene52552.t1
chr5.2 exon 38736856 38736937 38736856 ID=MS.gene52552.t1.exon10;Parent=MS.gene52552.t1
chr5.2 CDS 38736856 38736937 38736856 ID=cds.MS.gene52552.t1;Parent=MS.gene52552.t1
chr5.2 exon 38736737 38736763 38736737 ID=MS.gene52552.t1.exon11;Parent=MS.gene52552.t1
chr5.2 CDS 38736737 38736763 38736737 ID=cds.MS.gene52552.t1;Parent=MS.gene52552.t1
Gene Sequence

>MS.gene52552

ATGACCATACTTGTTGAGCATGTGGACTTTGGTAATGATTCTTTTTTGTTTTTGTTTATTTTATTGCTTCTATAGCATAACATAAAAGTCCCATCATATAACAAGCCACATTATTACAGGGTCCCAATTTGATGATAAAAATGTGCATTCGGAAGACATCAATGAACTTGTTCTTGATGGTGGATTTCCTCTACCAAAAAATGCTTCTCAAAATGCATTCTTCGCCCCTGAAATCAATTCATTTGGCCATGCCTTCAGGTTATTTCCAATTCTATTTCATTGTTTTTTTCTTCGTCTATAACCATAATTTTATTTTTTTTGAAAATAAAAAAGAAATTAACACATGATGATTGGAATTATTTGGCAGGAATTATGATGAAGAAAGTGAAAGGCAAAAAGGGGTTGAGGAATTCTATCGGTTGCAACACATCAACCAAACATATGATTTTGTAAGCAAATTTTATAATTATTTACATCAAATTTGTGTCTATTTCACATGAAGGAAATGTAATTGTGACCAAAATTCCAATTTGCAAAATGTTAATTAATGTAGGTGAAGAAAATGAGGGAGGAATACAAGAAATTAGACAAAGCAGAAATGAGTATATGGGAATGTTGTGAATTGCTGAATGAGGTTGTGGATGAAAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTGCTGCAATCTGCTGAAGCTATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTGACTGCTCTCATTCATGGTACATAATCGCCTTTTCAATATTTATATTATTTTTTAATTCAACATTCATATCCTGACAAAAAAGATCATTTACAATTTCAAGGCATAATAATCATCCATATCCTAATTTGAACAAGTCTGACATACCTTTCTAAATGGATATCATGGGGTCTCAATAATCTAACATTATTATTGTTATTATTGTCTTGCTTCAGATCTTGGGAAAATTCTTCTGCTTCCTAAATTTGGTGAATTACCTCAATGGGCTGTTGTTGGTTAGAAACTATTCCTTACACTTATTTTCATATGATTTTGTTTTGAACATTAGTTATTTGTATTGAACATTGAATTCAACATTTTAACTGAATGGTTAATGACATATTTGCAGGAGACACATTTCCCTTAGGTTGTGCCTTTGATGAATCAAATGTTCACCACAAGGTAATTATAAATATCTTGTAAAATTATGACAATGAATGAATGAGTCAATTGTTTAATCTTAAGTAATCAATCAATTTACCTAAATCTTGTGTCTGCTGCAGTATTTCAAGGAGAACCCTGATATCAAATCCCCTGCTTATAACACTAAAAATGGGATCTACAATGAAGGGTGTGGACTAGAAAATGTGATGATGTCATGGGGACATGATGATTATATGTGTATGGTGAGTCCGTAAATAATTCATCACACGATAGTATTAAATTTTCATTTTTTTTTACTGAATCGTTTGAATTGGTTCGATCTTGATCTAATAGTCTAAAATTGTGACAAATGTGTGATGTGCTAGCTTCCGAGGAAATCCGAATCAATTTTCCGATGATTCAACGATACTTTATTTACGATCTAATACATTGTGCATCTAATGTGCAGGTTGCTAAGGAAAATGGCTCCACTTTGCCAAATGCTGGATTGTTCATTATCAGATATCACTCCTTTTACCGTAAGCATTTTCGTTATTATGTGAAAACTTACCCCATTCTCTGTACAGAAAATTTATTTACTGAAAAACTTGATGACCTTACCTTGCAGCTTTGCATAAGGAAGGTGCATACACTCACTTGATGAATGAAGAAGATTTTGAGAATTTGAAGTGGCTCCACATATTTAAGTATGTTTGTATTTTAGTTTCATCATTTTTTTTATTCATTTGCACACATCTTTTGCTTCTCCTCATTACATAATAATTACTAATGATGTAATTTTTGTACAGCAAATATGATCTCTACAGCAAAAGCAAGGTTCTAGTTGATGTCGAAGCAGTGAAGCCATATTATCTATCACTTATTGAGAAGGTAACACCAATCTTTATGAACCGGTCATGTTTTTTTTTGTTCCCTCATTGTTTTTTTGTGTTACTTATTTTGTTTTGGTCATTGTTTTGCAGTATTTCCCAGCAAAGCTTAGATGGTGA
Protein sequence

>MS.gene52552.t1

MTILVEHVDFGSQFDDKNVHSEDINELVLDGGFPLPKNASQNAFFAPEINSFGHAFRNYDEESERQKGVEEFYRLQHINQTYDFVKKMREEYKKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKILLLPKFGELPQWAVVGDTFPLGCAFDESNVHHKYFKENPDIKSPAYNTKNGIYNEGCGLENVMMSWGHDDYMCMVAKENGSTLPNAGLFIIRYHSFYPLHKEGAYTHLMNEEDFENLKWLHIFNKYDLYSKSKVLVDVEAVKPYYLSLIEKYFPAKLRW