Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52825.t1 | XP_003590905.1 | 99.7 | 949 | 3 | 0 | 1 | 949 | 1 | 949 | 3.10E-305 | 1057.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52825.t1 | Q9M8Y0 | 87.6 | 934 | 111 | 2 | 21 | 949 | 7 | 940 | 3.3e-239 | 829.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52825.t1 | G7I5N5 | 99.7 | 949 | 3 | 0 | 1 | 949 | 1 | 949 | 2.2e-305 | 1057.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40223 | MS.gene52825 | PPI |
| MS.gene97109 | MS.gene52825 | PPI |
| MS.gene69092 | MS.gene52825 | PPI |
| MS.gene23932 | MS.gene52825 | PPI |
| MS.gene93994 | MS.gene52825 | PPI |
| MS.gene014576 | MS.gene52825 | PPI |
| MS.gene93993 | MS.gene52825 | PPI |
| MS.gene071051 | MS.gene52825 | PPI |
| MS.gene52825 | MS.gene93890 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52825.t1 | MTR_1g079510 | 99.684 | 949 | 3 | 0 | 1 | 949 | 1 | 949 | 0.0 | 1980 |
| MS.gene52825.t1 | MTR_1g059610 | 27.582 | 794 | 496 | 14 | 178 | 949 | 96 | 832 | 1.23e-77 | 273 |
| MS.gene52825.t1 | MTR_1g059610 | 30.904 | 343 | 189 | 3 | 148 | 442 | 98 | 440 | 4.11e-40 | 160 |
| MS.gene52825.t1 | MTR_1g045490 | 23.411 | 299 | 196 | 2 | 140 | 431 | 201 | 473 | 4.00e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52825.t1 | AT3G04240 | 82.334 | 934 | 160 | 2 | 21 | 949 | 7 | 940 | 0.0 | 1646 |
| MS.gene52825.t1 | AT3G04240 | 85.573 | 707 | 102 | 0 | 243 | 949 | 1 | 707 | 0.0 | 1314 |
| MS.gene52825.t1 | AT3G04240 | 32.362 | 309 | 200 | 2 | 175 | 474 | 1 | 309 | 3.04e-41 | 163 |
| MS.gene52825.t1 | AT3G04240 | 33.103 | 290 | 194 | 0 | 74 | 363 | 2 | 291 | 1.06e-40 | 161 |
| MS.gene52825.t1 | AT3G11540 | 27.665 | 788 | 493 | 15 | 177 | 943 | 92 | 823 | 4.44e-73 | 259 |
| MS.gene52825.t1 | AT3G11540 | 31.549 | 355 | 183 | 5 | 141 | 442 | 90 | 437 | 2.84e-39 | 158 |
| MS.gene52825.t1 | AT3G11540 | 32.830 | 265 | 171 | 1 | 116 | 373 | 172 | 436 | 1.78e-34 | 142 |
| MS.gene52825.t1 | AT3G11540 | 25.382 | 327 | 194 | 4 | 239 | 515 | 50 | 376 | 1.66e-19 | 94.7 |
| MS.gene52825.t1 | AT3G11540 | 28.346 | 254 | 168 | 4 | 78 | 317 | 196 | 449 | 7.17e-19 | 92.8 |
| MS.gene52825.t1 | AT3G11540 | 28.700 | 223 | 149 | 3 | 295 | 510 | 41 | 260 | 6.77e-16 | 83.2 |
| MS.gene52825.t1 | AT3G11540 | 25.792 | 663 | 416 | 16 | 295 | 943 | 41 | 641 | 9.49e-45 | 174 |
| MS.gene52825.t1 | AT3G11540 | 31.694 | 183 | 113 | 2 | 198 | 373 | 77 | 254 | 1.48e-16 | 85.1 |
| MS.gene52825.t1 | AT3G11540 | 31.176 | 170 | 103 | 3 | 177 | 339 | 92 | 254 | 1.58e-13 | 75.5 |
| MS.gene52825.t1 | AT3G11540 | 26.540 | 211 | 143 | 2 | 239 | 442 | 50 | 255 | 1.02e-11 | 69.3 |
| MS.gene52825.t1 | AT3G11540 | 31.250 | 192 | 103 | 6 | 141 | 317 | 90 | 267 | 3.58e-11 | 67.8 |
| MS.gene52825.t1 | AT2G32450 | 28.713 | 202 | 136 | 2 | 180 | 373 | 245 | 446 | 1.37e-14 | 79.0 |
| MS.gene52825.t1 | AT2G32450 | 27.976 | 168 | 121 | 0 | 196 | 363 | 303 | 470 | 8.48e-13 | 73.2 |
| MS.gene52825.t1 | AT2G32450 | 24.481 | 241 | 174 | 1 | 199 | 431 | 230 | 470 | 1.16e-12 | 72.8 |
| MS.gene52825.t1 | AT1G05150 | 24.206 | 252 | 165 | 1 | 180 | 431 | 250 | 475 | 3.62e-13 | 74.3 |
| MS.gene52825.t1 | AT1G05150 | 25.094 | 267 | 172 | 2 | 248 | 512 | 250 | 490 | 1.50e-12 | 72.4 |
| MS.gene52825.t1 | AT5G63200 | 21.594 | 389 | 231 | 10 | 117 | 434 | 218 | 603 | 1.76e-11 | 68.6 |
Find 234 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATCCTTATCAACCTTAA+TGG | 0.143162 | 1.4:-64340742 | MS.gene52825:CDS |
| GGCTGAAGCTCATGCTAATT+TGG | 0.170309 | 1.4:-64343570 | MS.gene52825:CDS |
| AAATGATGTTACAGGTAATT+TGG | 0.170385 | 1.4:-64344747 | MS.gene52825:intron |
| TTTGGAAGCTTACAATAATT+TGG | 0.173624 | 1.4:-64344645 | MS.gene52825:intron |
| TGACCATGCATCAGCAAAAT+TGG | 0.177023 | 1.4:+64347287 | None:intergenic |
| TACCATGTATTAAATATTTC+AGG | 0.201953 | 1.4:+64339044 | None:intergenic |
| CCACAGGAACAGATATATTA+TGG | 0.228996 | 1.4:-64338387 | MS.gene52825:CDS |
| CAATGCTTGCTCTGGAAATT+AGG | 0.230192 | 1.4:-64341381 | MS.gene52825:intron |
| ACCAGTTCAAGTTTCATATA+TGG | 0.238851 | 1.4:-64339515 | MS.gene52825:CDS |
| TACTCTGCCTCTTGAGAAAA+TGG | 0.256247 | 1.4:-64338347 | MS.gene52825:CDS |
| CTACCTTTGTATAACCATTA+AGG | 0.273432 | 1.4:+64340728 | None:intergenic |
| TAATTTGGCTTCTGCCTATA+AGG | 0.274347 | 1.4:-64343555 | MS.gene52825:CDS |
| ATTAGCATACCTATCCTTAT+AGG | 0.292089 | 1.4:+64343541 | None:intergenic |
| CCAAACTATGGCATGGCTTA+TGG | 0.303947 | 1.4:-64345541 | MS.gene52825:intron |
| TGCCGAGTGTTACGGTAATA+TGG | 0.304813 | 1.4:-64348007 | MS.gene52825:CDS |
| CATGTATATATTTCCAAGAT+TGG | 0.315239 | 1.4:+64344122 | None:intergenic |
| TAACCTCCCTCCTGCTTGAT+TGG | 0.315790 | 1.4:+64341184 | None:intergenic |
| TCAGTTAGAGCTTGAAGCTT+TGG | 0.317430 | 1.4:+64338062 | None:intergenic |
| GTTTCATATATGGGATTTCC+TGG | 0.320555 | 1.4:-64339505 | MS.gene52825:CDS |
| CCAGTTCAAGTTTCATATAT+GGG | 0.320872 | 1.4:-64339514 | MS.gene52825:CDS |
| CTCTGTATTTCCACTGGACT+GGG | 0.331322 | 1.4:-64338304 | MS.gene52825:CDS |
| AATAGTAAAATTACCATTAG+AGG | 0.332566 | 1.4:+64347186 | None:intergenic |
| AGAAGATTGCAAGTTGCTTC+AGG | 0.349834 | 1.4:+64343144 | None:intergenic |
| CTCCATTCAGTACCATCATT+TGG | 0.353434 | 1.4:+64340856 | None:intergenic |
| CAGTTAGAGCTTGAAGCTTT+GGG | 0.354805 | 1.4:+64338063 | None:intergenic |
| GATCGTTTGGGCTGACAGTT+TGG | 0.362406 | 1.4:+64339131 | None:intergenic |
| AAACAGAGGCAATACTTATA+AGG | 0.364549 | 1.4:-64343657 | MS.gene52825:CDS |
| CTTCAGACACGGCCAAACTA+TGG | 0.368387 | 1.4:-64345553 | MS.gene52825:CDS |
| CCTGATGCATACTTGAACCT+TGG | 0.368615 | 1.4:-64345733 | MS.gene52825:CDS |
| CTCTTGAAATTTCCTGCAGC+AGG | 0.374684 | 1.4:-64338873 | MS.gene52825:CDS |
| CAATCTTCTACATACACTTC+AGG | 0.378736 | 1.4:-64343130 | MS.gene52825:intron |
| CCACAAGCGTTGACCAATCT+TGG | 0.379245 | 1.4:-64344135 | MS.gene52825:CDS |
| CTTTGTAAACGATTATAAAC+AGG | 0.383696 | 1.4:-64339279 | MS.gene52825:intron |
| ATTATAGCAAGGTTGTTATA+CGG | 0.385320 | 1.4:+64343942 | None:intergenic |
| TATAACCATTAAGGTTGATA+AGG | 0.388324 | 1.4:+64340737 | None:intergenic |
| ATAGGAGCAGGATGGCTAAA+TGG | 0.389099 | 1.4:+64341208 | None:intergenic |
| ACTTGCTATCAACCCTCTAA+TGG | 0.389345 | 1.4:-64347199 | MS.gene52825:intron |
| AAATCTTGCTGGTCTGTTCA+TGG | 0.391501 | 1.4:-64346162 | MS.gene52825:CDS |
| CAGCCCAAACGATCAGATTA+TGG | 0.392917 | 1.4:-64339122 | MS.gene52825:CDS |
| ACTCTGTATTTCCACTGGAC+TGG | 0.395288 | 1.4:-64338305 | MS.gene52825:CDS |
| CCATAAGCCATGCCATAGTT+TGG | 0.399981 | 1.4:+64345541 | None:intergenic |
| CCAAGGTTCAAGTATGCATC+AGG | 0.403218 | 1.4:+64345733 | None:intergenic |
| CAAATGTTCAAGGAAGTAGA+AGG | 0.411950 | 1.4:-64341593 | MS.gene52825:CDS |
| ACATTATGAGCAAGGTCAAC+TGG | 0.412081 | 1.4:-64344717 | MS.gene52825:CDS |
| GCTGGTCTGTTCATGGAGTC+TGG | 0.413134 | 1.4:-64346155 | MS.gene52825:CDS |
| CTTCACAGATGTTGCAATGA+AGG | 0.419095 | 1.4:-64338582 | MS.gene52825:CDS |
| CTATTACTTGATTGCCATTG+AGG | 0.423798 | 1.4:-64347827 | MS.gene52825:intron |
| GAGACCATAATCTGATCGTT+TGG | 0.428281 | 1.4:+64339118 | None:intergenic |
| CTCTTGAGAAAATGGCTACT+AGG | 0.429756 | 1.4:-64338339 | MS.gene52825:CDS |
| ATTGCATGGTCAAATCTTGC+TGG | 0.431271 | 1.4:-64346173 | MS.gene52825:CDS |
| CAAGATTGGTCAACGCTTGT+GGG | 0.432953 | 1.4:+64344136 | None:intergenic |
| TTGGCTCATCCGACAGCTCT+CGG | 0.434068 | 1.4:-64348702 | MS.gene52825:CDS |
| ATGCTATGGCATGGAAAGGC+TGG | 0.434506 | 1.4:+64341416 | None:intergenic |
| ATCTGAAACAGAGCACTTTG+TGG | 0.435863 | 1.4:-64340821 | MS.gene52825:CDS |
| CCTTGGTGCAATTTATTACC+AGG | 0.442505 | 1.4:-64348198 | MS.gene52825:intron |
| GACCATGCATCAGCAAAATT+GGG | 0.445415 | 1.4:+64347288 | None:intergenic |
| CCAAGATTGGTCAACGCTTG+TGG | 0.445603 | 1.4:+64344135 | None:intergenic |
| AAAATGGCTACTAGGGTTGC+TGG | 0.449044 | 1.4:-64338331 | MS.gene52825:CDS |
| CTGATGCATACTTGAACCTT+GGG | 0.451840 | 1.4:-64345732 | MS.gene52825:CDS |
| AACCACCACTCTCAGCTTGT+TGG | 0.452650 | 1.4:-64348721 | MS.gene52825:CDS |
| GAACGGTTCAACGCGATCTC+CGG | 0.452834 | 1.4:+64348669 | None:intergenic |
| ACCAAGGAGTAGTAAATTAT+CGG | 0.453046 | 1.4:+64348214 | None:intergenic |
| ACCTTGCTCATAATGTATAC+TGG | 0.453921 | 1.4:+64344724 | None:intergenic |
| CACAGGAACAGATATATTAT+GGG | 0.455571 | 1.4:-64338386 | MS.gene52825:CDS |
| CCCATATATGAAACTTGAAC+TGG | 0.456705 | 1.4:+64339514 | None:intergenic |
| CTTTCAGATGCTGCTGCACA+AGG | 0.457171 | 1.4:-64338626 | MS.gene52825:intron |
| GACCTCATTGTAGCAAGATA+TGG | 0.458721 | 1.4:+64343715 | None:intergenic |
| AGCAGTGTGCAGCATATTTG+CGG | 0.459706 | 1.4:+64341260 | None:intergenic |
| GGCAATACTTATAAGGAGAT+TGG | 0.459746 | 1.4:-64343650 | MS.gene52825:CDS |
| ATGGGATTTCCTGGCACAAC+CGG | 0.462984 | 1.4:-64339496 | MS.gene52825:CDS |
| CCCTCCTGCTTGATTGGAAT+AGG | 0.463550 | 1.4:+64341190 | None:intergenic |
| CGCGCTCATGATTCTAGTGA+AGG | 0.464261 | 1.4:-64348604 | MS.gene52825:intron |
| AGACCATAATCTGATCGTTT+GGG | 0.464870 | 1.4:+64339119 | None:intergenic |
| TAATGCAGTGTGTCTGTTGT+TGG | 0.467039 | 1.4:-64341628 | MS.gene52825:intron |
| CGGAATCATGATCTCCGTCC+AGG | 0.468061 | 1.4:-64348767 | None:intergenic |
| GGCTCACTCTGTATTTCCAC+TGG | 0.472212 | 1.4:-64338310 | MS.gene52825:CDS |
| CAAGAGCCAAAGCGCGCTGT+TGG | 0.474016 | 1.4:+64338890 | None:intergenic |
| ACTTGACCCAATGCTTGCTC+TGG | 0.474813 | 1.4:-64341389 | MS.gene52825:CDS |
| CCACACTTTGCCGAGTGTTA+CGG | 0.474939 | 1.4:-64348015 | MS.gene52825:CDS |
| AGCTCTCGGTTGCCGTTCAC+CGG | 0.478100 | 1.4:-64348688 | MS.gene52825:CDS |
| TAGAGTCAGTGATGCTATCC+AGG | 0.479729 | 1.4:-64343627 | MS.gene52825:CDS |
| CCACCCATTGTCACATCTCA+TGG | 0.482380 | 1.4:-64341023 | MS.gene52825:CDS |
| AAGAGCCAAAGCGCGCTGTT+GGG | 0.483592 | 1.4:+64338891 | None:intergenic |
| TATGAAACTTGAACTGGTGC+AGG | 0.484055 | 1.4:+64339520 | None:intergenic |
| ACCGATAATTTACTACTCCT+TGG | 0.486401 | 1.4:-64348215 | MS.gene52825:CDS |
| GTAATCTATGTATGTAGCTC+CGG | 0.486466 | 1.4:+64339477 | None:intergenic |
| GGTTATGAAAGACTAAGGAT+TGG | 0.487687 | 1.4:-64341166 | MS.gene52825:CDS |
| CGACGACAACTCTTGCTTAA+CGG | 0.493227 | 1.4:+64348645 | None:intergenic |
| GGTTGATGCTCATAGTAACT+TGG | 0.496415 | 1.4:-64347012 | MS.gene52825:CDS |
| AGCTACATACATAGATTACT+TGG | 0.496829 | 1.4:-64339473 | MS.gene52825:CDS |
| CTTCAATCAACTTTACAAGA+TGG | 0.496856 | 1.4:-64339069 | MS.gene52825:CDS |
| GCATGAGCTTCAGCCATAGT+AGG | 0.497608 | 1.4:+64343578 | None:intergenic |
| CAAAGTAGCAATGCGGGAGA+TGG | 0.497765 | 1.4:+64339297 | None:intergenic |
| TTCAGATGCTGCTGCACAAG+GGG | 0.497876 | 1.4:-64338624 | MS.gene52825:intron |
| TAATTTCCAGAGCAAGCATT+GGG | 0.501643 | 1.4:+64341383 | None:intergenic |
| TATGTAGCTCCGGTTGTGCC+AGG | 0.502858 | 1.4:+64339487 | None:intergenic |
| GTTATGAAAGACTAAGGATT+GGG | 0.503729 | 1.4:-64341165 | MS.gene52825:intron |
| TCTGTGAAGATAATTTGATC+AGG | 0.505192 | 1.4:+64338596 | None:intergenic |
| AGTCTCATTTCTCCTGCTGC+AGG | 0.505262 | 1.4:+64338861 | None:intergenic |
| TGCTTGATTGGAATAGGAGC+AGG | 0.506321 | 1.4:+64341196 | None:intergenic |
| GGTCCTCCGCATTGATCCCT+TGG | 0.509269 | 1.4:-64343696 | MS.gene52825:CDS |
| ATTGATCCCTTGGCAGCTGA+TGG | 0.509463 | 1.4:-64343686 | MS.gene52825:CDS |
| AATGCAGTGTGTCTGTTGTT+GGG | 0.510745 | 1.4:-64341627 | MS.gene52825:intron |
| GGCAGACCTTGTAATACTGC+AGG | 0.511471 | 1.4:+64346117 | None:intergenic |
| GGTAATCTAATGAAAGCTCA+AGG | 0.514812 | 1.4:-64346990 | MS.gene52825:CDS |
| TGCTATAATATATAAGCAGC+AGG | 0.515077 | 1.4:-64343928 | MS.gene52825:intron |
| GCATGGAAAGGCTGGACACT+AGG | 0.517313 | 1.4:+64341424 | None:intergenic |
| CGTTTACAAAGTAGCAATGC+GGG | 0.517564 | 1.4:+64339291 | None:intergenic |
| AACTCTTGCTTAACGGCGAA+CGG | 0.519318 | 1.4:+64348652 | None:intergenic |
| TAATCGCACGTATGTAATCC+TGG | 0.519833 | 1.4:+64343609 | None:intergenic |
| CAATCTTGGAAATATATACA+TGG | 0.519958 | 1.4:-64344121 | MS.gene52825:CDS |
| TGCTATCGTATCTGATGTCA+TGG | 0.520898 | 1.4:+64340789 | None:intergenic |
| TACAAGACCATCAGCTGCCA+AGG | 0.521518 | 1.4:+64343679 | None:intergenic |
| GATTACCGTCAGGCCTACTA+TGG | 0.522671 | 1.4:-64343591 | MS.gene52825:CDS |
| GTGTACCCAACAGCGCGCTT+TGG | 0.522743 | 1.4:-64338896 | MS.gene52825:CDS |
| ATCAAGAATACATACCTCAA+TGG | 0.523924 | 1.4:+64347813 | None:intergenic |
| CTAATTTCCAGAGCAAGCAT+TGG | 0.530198 | 1.4:+64341382 | None:intergenic |
| AACCTACCTTTGCTATTGCA+TGG | 0.530684 | 1.4:-64346187 | MS.gene52825:CDS |
| TTCACAGATGTTGCAATGAA+GGG | 0.531625 | 1.4:-64338581 | MS.gene52825:CDS |
| CAGAGCCCTGCAGTATTACA+AGG | 0.533229 | 1.4:-64346123 | MS.gene52825:intron |
| CTGTATTTCCACTGGACTGG+GGG | 0.534881 | 1.4:-64338302 | MS.gene52825:CDS |
| AGTACCATCATTTGGACTCA+AGG | 0.534981 | 1.4:+64340864 | None:intergenic |
| CTCTCTTTGACACAAACCGA+TGG | 0.535023 | 1.4:-64338010 | MS.gene52825:CDS |
| TGGCTTCTGCCTATAAGGAT+AGG | 0.535459 | 1.4:-64343550 | MS.gene52825:intron |
| TTGGAAATATATACATGGAA+TGG | 0.538270 | 1.4:-64344116 | MS.gene52825:intron |
| AGGGAGGTTATGAAAGACTA+AGG | 0.540074 | 1.4:-64341171 | MS.gene52825:CDS |
| AAGAACATACATTATAGCAC+TGG | 0.540515 | 1.4:+64344273 | None:intergenic |
| TCTTGAGAAAATGGCTACTA+GGG | 0.544333 | 1.4:-64338338 | MS.gene52825:CDS |
| GTCAAGAAATAAGTCTGCTA+AGG | 0.547289 | 1.4:+64338538 | None:intergenic |
| CTAGAATCATGAGCGCGTAA+AGG | 0.548037 | 1.4:+64348610 | None:intergenic |
| GTGGTATGTGCATTGCATAA+AGG | 0.548073 | 1.4:+64338406 | None:intergenic |
| GCCAGTATACATTATGAGCA+AGG | 0.548161 | 1.4:-64344725 | MS.gene52825:CDS |
| TGCTCCTATTCCAATCAAGC+AGG | 0.555496 | 1.4:-64341194 | MS.gene52825:CDS |
| TTTCAGATGCTGCTGCACAA+GGG | 0.555667 | 1.4:-64338625 | MS.gene52825:intron |
| ATAGTAAAATTACCATTAGA+GGG | 0.557033 | 1.4:+64347187 | None:intergenic |
| GGTAATGCTCTGAAAGATGT+TGG | 0.562829 | 1.4:-64344314 | MS.gene52825:CDS |
| ATTATGGGCAGGTCTGCCTA+TGG | 0.564345 | 1.4:-64338371 | MS.gene52825:CDS |
| GGAACAGATATATTATGGGC+AGG | 0.566521 | 1.4:-64338382 | MS.gene52825:CDS |
| TGGGTCAAGTGGATATGCTA+TGG | 0.567625 | 1.4:+64341402 | None:intergenic |
| TGCCATATTACCGTAACACT+CGG | 0.568106 | 1.4:+64348005 | None:intergenic |
| TGAGCAAGGTCAACTGGACA+TGG | 0.570022 | 1.4:-64344711 | MS.gene52825:CDS |
| AGAGCAAGCATTGGGTCAAG+TGG | 0.574030 | 1.4:+64341391 | None:intergenic |
| GGCTGTAAAGAGCTACAGAC+AGG | 0.576286 | 1.4:-64343190 | MS.gene52825:CDS |
| GCTACACTAAATGTAACCAC+TGG | 0.577805 | 1.4:-64343975 | MS.gene52825:CDS |
| TTATTTCAGTGGACATGTAG+AGG | 0.579165 | 1.4:-64343214 | MS.gene52825:intron |
| GGTGGTTGTAGTGGTGGCGA+TGG | 0.580159 | 1.4:+64348737 | None:intergenic |
| ATCCTGAAATATTTAATACA+TGG | 0.581813 | 1.4:-64339046 | MS.gene52825:intron |
| GGGAGGAGATGATTGTCAGC+AGG | 0.582027 | 1.4:-64338282 | MS.gene52825:intron |
| GGATCGTGATCAAATGTTCA+AGG | 0.582624 | 1.4:-64341603 | MS.gene52825:CDS |
| GTTGATGCTCATAGTAACTT+GGG | 0.583189 | 1.4:-64347011 | MS.gene52825:CDS |
| AAGTATGCATCAGGGAAGGA+AGG | 0.583668 | 1.4:+64345742 | None:intergenic |
| GAACCTTGGGAATGTATACA+AGG | 0.587196 | 1.4:-64345719 | MS.gene52825:intron |
| TACGCATGTATGCACTAGCT+AGG | 0.587484 | 1.4:+64347262 | None:intergenic |
| GCTAGTGCATACATGCGTAA+AGG | 0.588429 | 1.4:-64347258 | MS.gene52825:CDS |
| GGTGGCGATGGTGATCTCCC+TGG | 0.590906 | 1.4:+64348749 | None:intergenic |
| ATCCCATGAGATGTGACAAT+GGG | 0.592439 | 1.4:+64341020 | None:intergenic |
| AGATTACTTGGTCACTGATG+AGG | 0.592637 | 1.4:-64339461 | MS.gene52825:intron |
| TAGATATGTGCATACTGAAG+AGG | 0.593648 | 1.4:+64339335 | None:intergenic |
| TCAAGAGGCAGAGTAACCAT+AGG | 0.593677 | 1.4:+64338355 | None:intergenic |
| GTCAACGCTTGTGGGTGGTT+AGG | 0.593743 | 1.4:+64344144 | None:intergenic |
| CAAGTGGATATGCTATGGCA+TGG | 0.594989 | 1.4:+64341407 | None:intergenic |
| CAACCTTAATGGTTATACAA+AGG | 0.596920 | 1.4:-64340731 | MS.gene52825:intron |
| ATCAACATGCTCTTCAGACA+CGG | 0.597820 | 1.4:-64345564 | MS.gene52825:CDS |
| AGCAGGAGAAATGAGACTGA+GGG | 0.597842 | 1.4:-64338856 | MS.gene52825:CDS |
| GGTGGTTAGGCTGTAACGAA+AGG | 0.598171 | 1.4:+64344157 | None:intergenic |
| GTTTGTGTCAAAGAGAGGAC+AGG | 0.598476 | 1.4:+64338016 | None:intergenic |
| TGAAGGGTGAACACATTAGA+CGG | 0.599057 | 1.4:-64338565 | MS.gene52825:CDS |
| GCTGAGAGTGGTGGTTGTAG+TGG | 0.599298 | 1.4:+64348728 | None:intergenic |
| TAATATGGCAAATGCATGGA+AGG | 0.599920 | 1.4:-64347992 | MS.gene52825:intron |
| ACATACGTGCGATTACCGTC+AGG | 0.600155 | 1.4:-64343601 | MS.gene52825:CDS |
| TCAACGCGATCTCCGGTGAA+CGG | 0.601206 | 1.4:+64348676 | None:intergenic |
| GAACGGCAACCGAGAGCTGT+CGG | 0.601559 | 1.4:+64348693 | None:intergenic |
| TTACCTTGTATACATTCCCA+AGG | 0.606164 | 1.4:+64345716 | None:intergenic |
| CCATAATATATCTGTTCCTG+TGG | 0.606701 | 1.4:+64338387 | None:intergenic |
| CACCCATTGTCACATCTCAT+GGG | 0.607132 | 1.4:-64341022 | MS.gene52825:CDS |
| TCTGTATTTCCACTGGACTG+GGG | 0.607244 | 1.4:-64338303 | MS.gene52825:CDS |
| GCTGCTTATATATTATAGCA+AGG | 0.607657 | 1.4:+64343931 | None:intergenic |
| TCCTATTCCAATCAAGCAGG+AGG | 0.607994 | 1.4:-64341191 | MS.gene52825:CDS |
| TCTAATGAAAGCTCAAGGGT+TGG | 0.609689 | 1.4:-64346985 | MS.gene52825:CDS |
| GCGATGGTGATCTCCCTGGA+CGG | 0.610099 | 1.4:+64348753 | None:intergenic |
| ACGGTAATATGGCAAATGCA+TGG | 0.610222 | 1.4:-64347996 | MS.gene52825:CDS |
| GATTGGTCAACGCTTGTGGG+TGG | 0.615687 | 1.4:+64344139 | None:intergenic |
| GTCCAAATGATGGTACTGAA+TGG | 0.616666 | 1.4:-64340858 | MS.gene52825:CDS |
| CCGTAACACTCGGCAAAGTG+TGG | 0.618577 | 1.4:+64348015 | None:intergenic |
| ATTTGACCATGCAATAGCAA+AGG | 0.621397 | 1.4:+64346181 | None:intergenic |
| TTATGCAATGCACATACCAC+AGG | 0.622011 | 1.4:-64338403 | MS.gene52825:CDS |
| GGAATCATGATCTCCGTCCA+GGG | 0.622815 | 1.4:-64348766 | None:intergenic |
| GTAATCTAATGAAAGCTCAA+GGG | 0.626437 | 1.4:-64346989 | MS.gene52825:CDS |
| CATCGGTTTGTGTCAAAGAG+AGG | 0.626631 | 1.4:+64338011 | None:intergenic |
| TAACATGCAATAGCTTCTTG+AGG | 0.628478 | 1.4:+64345586 | None:intergenic |
| AAATGTTCAAGGAAGTAGAA+GGG | 0.629997 | 1.4:-64341592 | MS.gene52825:CDS |
| GAAAGATGTTGGCAGAGTGG+AGG | 0.630480 | 1.4:-64344303 | MS.gene52825:CDS |
| GACCATGCAATAGCAAAGGT+AGG | 0.630488 | 1.4:+64346185 | None:intergenic |
| TCTCTTTGACACAAACCGAT+GGG | 0.631347 | 1.4:-64338009 | None:intergenic |
| TTCAGCCATAGTAGGCCTGA+CGG | 0.631547 | 1.4:+64343586 | None:intergenic |
| GCAGACCTTGTAATACTGCA+GGG | 0.633448 | 1.4:+64346118 | None:intergenic |
| TGCCATATCTTGCTACAATG+AGG | 0.633633 | 1.4:-64343717 | MS.gene52825:CDS |
| GCACATCAAATGTACAAGAG+TGG | 0.634726 | 1.4:-64348296 | MS.gene52825:CDS |
| GAGAGTGGTGGTTGTAGTGG+TGG | 0.636309 | 1.4:+64348731 | None:intergenic |
| GACACGGCCAAACTATGGCA+TGG | 0.637088 | 1.4:-64345548 | MS.gene52825:CDS |
| TATGCACAACAGAAAGAATG+TGG | 0.638579 | 1.4:-64340987 | MS.gene52825:CDS |
| ATGAGCCAACAAGCTGAGAG+TGG | 0.640591 | 1.4:+64348716 | None:intergenic |
| AGTAAATTATCGGTGCGAAG+CGG | 0.641514 | 1.4:+64348224 | None:intergenic |
| AGGTATGTGAGTAGTGACTT+TGG | 0.648824 | 1.4:-64341049 | MS.gene52825:CDS |
| CAGCAGGAGAAATGAGACTG+AGG | 0.649017 | 1.4:-64338857 | MS.gene52825:CDS |
| ACAAGACCATCAGCTGCCAA+GGG | 0.656374 | 1.4:+64343680 | None:intergenic |
| GGATATGCTATGGCATGGAA+AGG | 0.659767 | 1.4:+64341412 | None:intergenic |
| GTTCAAGTATGCATCAGGGA+AGG | 0.661650 | 1.4:+64345738 | None:intergenic |
| CTGCCAAGGGATCAATGCGG+AGG | 0.661848 | 1.4:+64343693 | None:intergenic |
| CCTATTCCAATCAAGCAGGA+GGG | 0.662777 | 1.4:-64341190 | MS.gene52825:CDS |
| TCAAGTAATAGCGAATTGCA+AGG | 0.664537 | 1.4:+64347839 | None:intergenic |
| CCATGAGATGTGACAATGGG+TGG | 0.665060 | 1.4:+64341023 | None:intergenic |
| ATTCCAATCAAGCAGGAGGG+AGG | 0.666622 | 1.4:-64341187 | MS.gene52825:CDS |
| TATGCCTTGAGTCCAAATGA+TGG | 0.671518 | 1.4:-64340868 | MS.gene52825:CDS |
| CAAGGTTCAAGTATGCATCA+GGG | 0.675585 | 1.4:+64345734 | None:intergenic |
| GCAGTGTGTCTGTTGTTGGG+AGG | 0.677864 | 1.4:-64341624 | MS.gene52825:intron |
| AAATTGTTAATGCAGGAACA+TGG | 0.679005 | 1.4:-64344024 | MS.gene52825:intron |
| GGAGCAGGATGGCTAAATGG+TGG | 0.680480 | 1.4:+64341211 | None:intergenic |
| CCTGGTAATAAATTGCACCA+AGG | 0.681422 | 1.4:+64348198 | None:intergenic |
| GGCATACAGTTGTTACCTCG+AGG | 0.683086 | 1.4:-64346222 | MS.gene52825:CDS |
| TTTCAGTGGACATGTAGAGG+CGG | 0.686039 | 1.4:-64343211 | MS.gene52825:intron |
| AGCCAACAAGCTGAGAGTGG+TGG | 0.690346 | 1.4:+64348719 | None:intergenic |
| GATCCCATGAGATGTGACAA+TGG | 0.693395 | 1.4:+64341019 | None:intergenic |
| GTTGTATACGCAATGCCTCG+AGG | 0.703270 | 1.4:+64346207 | None:intergenic |
| GCTGATGGTCTTGTAAACAG+AGG | 0.706829 | 1.4:-64343671 | MS.gene52825:CDS |
| ATACGGTGCAGATAATCCAG+TGG | 0.709165 | 1.4:+64343959 | None:intergenic |
| TGATTGGAATAGGAGCAGGA+TGG | 0.709742 | 1.4:+64341200 | None:intergenic |
| GCACAACAGAAAGAATGTGG+AGG | 0.713802 | 1.4:-64340984 | MS.gene52825:intron |
| TCGTTTACAAAGTAGCAATG+CGG | 0.715211 | 1.4:+64339290 | None:intergenic |
| TCTGAAAGATGTTGGCAGAG+TGG | 0.720915 | 1.4:-64344306 | MS.gene52825:CDS |
| TTGTTAATGCAGGAACATGG+TGG | 0.744612 | 1.4:-64344021 | MS.gene52825:intron |
| ATCAGATTATGGTCTCCCTG+AGG | 0.756050 | 1.4:-64339111 | MS.gene52825:CDS |
| CAGCTGCCAAGGGATCAATG+CGG | 0.837731 | 1.4:+64343690 | None:intergenic |
| GATAGCAAAATTGATCAACG+AGG | 0.841690 | 1.4:-64340773 | MS.gene52825:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 64338010 | 64348782 | 64338010 | ID=MS.gene52825 |
| chr1.4 | mRNA | 64338010 | 64348782 | 64338010 | ID=MS.gene52825.t1;Parent=MS.gene52825 |
| chr1.4 | exon | 64348605 | 64348782 | 64348605 | ID=MS.gene52825.t1.exon1;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64348605 | 64348782 | 64348605 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64348199 | 64348344 | 64348199 | ID=MS.gene52825.t1.exon2;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64348199 | 64348344 | 64348199 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64347993 | 64348091 | 64347993 | ID=MS.gene52825.t1.exon3;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64347993 | 64348091 | 64347993 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64347828 | 64347878 | 64347828 | ID=MS.gene52825.t1.exon4;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64347828 | 64347878 | 64347828 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64347200 | 64347316 | 64347200 | ID=MS.gene52825.t1.exon5;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64347200 | 64347316 | 64347200 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64346977 | 64347033 | 64346977 | ID=MS.gene52825.t1.exon6;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64346977 | 64347033 | 64346977 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64346124 | 64346243 | 64346124 | ID=MS.gene52825.t1.exon7;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64346124 | 64346243 | 64346124 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64345720 | 64345782 | 64345720 | ID=MS.gene52825.t1.exon8;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64345720 | 64345782 | 64345720 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64345542 | 64345620 | 64345542 | ID=MS.gene52825.t1.exon9;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64345542 | 64345620 | 64345542 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64344646 | 64344755 | 64344646 | ID=MS.gene52825.t1.exon10;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64344646 | 64344755 | 64344646 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64344283 | 64344336 | 64344283 | ID=MS.gene52825.t1.exon11;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64344283 | 64344336 | 64344283 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64344117 | 64344184 | 64344117 | ID=MS.gene52825.t1.exon12;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64344117 | 64344184 | 64344117 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64343929 | 64344031 | 64343929 | ID=MS.gene52825.t1.exon13;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64343929 | 64344031 | 64343929 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64343551 | 64343753 | 64343551 | ID=MS.gene52825.t1.exon14;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64343551 | 64343753 | 64343551 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64343131 | 64343227 | 64343131 | ID=MS.gene52825.t1.exon15;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64343131 | 64343227 | 64343131 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64341571 | 64341642 | 64341571 | ID=MS.gene52825.t1.exon16;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64341571 | 64341642 | 64341571 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64341382 | 64341458 | 64341382 | ID=MS.gene52825.t1.exon17;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64341382 | 64341458 | 64341382 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64341166 | 64341282 | 64341166 | ID=MS.gene52825.t1.exon18;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64341166 | 64341282 | 64341166 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64340985 | 64341069 | 64340985 | ID=MS.gene52825.t1.exon19;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64340985 | 64341069 | 64340985 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64340732 | 64340899 | 64340732 | ID=MS.gene52825.t1.exon20;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64340732 | 64340899 | 64340732 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64339462 | 64339572 | 64339462 | ID=MS.gene52825.t1.exon21;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64339462 | 64339572 | 64339462 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64339280 | 64339366 | 64339280 | ID=MS.gene52825.t1.exon22;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64339280 | 64339366 | 64339280 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64339047 | 64339174 | 64339047 | ID=MS.gene52825.t1.exon23;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64339047 | 64339174 | 64339047 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64338853 | 64338935 | 64338853 | ID=MS.gene52825.t1.exon24;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64338853 | 64338935 | 64338853 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64338536 | 64338641 | 64338536 | ID=MS.gene52825.t1.exon25;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64338536 | 64338641 | 64338536 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64338283 | 64338429 | 64338283 | ID=MS.gene52825.t1.exon26;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64338283 | 64338429 | 64338283 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| chr1.4 | exon | 64338010 | 64338130 | 64338010 | ID=MS.gene52825.t1.exon27;Parent=MS.gene52825.t1 |
| chr1.4 | CDS | 64338010 | 64338130 | 64338010 | ID=cds.MS.gene52825.t1;Parent=MS.gene52825.t1 |
| Gene Sequence |
| Protein sequence |
