AlfalfaGEDB | MS.gene93993

M. sativa cultivar XinJiangDaYe / MS.gene93993

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00560.36 PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93993.t1	RHN59754.1	96.5	941	33	0	1	941	29	969	3.90E-244	854.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93993.t1	Q9C7T7	50.6	395	182	5	548	930	576	969	1.1e-101	372.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93993.t1	A0A396I687	96.5	941	33	0	1	941	29	969	2.8e-244	854.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene058120	MS.gene93993	0.800321	1.52E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene014576	MS.gene93993	PPI
MS.gene07592	MS.gene93993	PPI
MS.gene21449	MS.gene93993	PPI
MS.gene23932	MS.gene93993	PPI
MS.gene40223	MS.gene93993	PPI
MS.gene93993	MS.gene43498	PPI
MS.gene93993	MS.gene74888	PPI
MS.gene93993	MS.gene015297	PPI
MS.gene93993	MS.gene09640	PPI
MS.gene93993	MS.gene69092	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93993.t1	MTR_4g035200	88.522	636	50	1	1	636	29	641	0.0	1103
MS.gene93993.t1	MTR_4g035200	91.964	448	36	0	189	636	1	448	0.0	820
MS.gene93993.t1	MTR_4g035200	29.765	383	242	5	69	450	1	357	2.04e-43	164
MS.gene93993.t1	MTR_4g035200	31.250	352	239	3	48	398	4	353	3.69e-43	164
MS.gene93993.t1	MTR_2g010470	41.115	951	510	16	2	924	39	967	0.0	678
MS.gene93993.t1	MTR_3g110860	39.875	963	522	19	4	926	21	966	0.0	648
MS.gene93993.t1	MTR_2g014560	39.897	975	518	16	2	929	18	971	0.0	625
MS.gene93993.t1	MTR_4g088320	38.337	986	526	21	2	930	23	983	0.0	610
MS.gene93993.t1	MTR_2g090710	38.636	968	520	19	1	919	21	963	0.0	603
MS.gene93993.t1	MTR_5g014700	38.169	972	531	23	5	930	26	973	0.0	590

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene93993.t1	AT1G72180	53.887	939	420	5	4	930	32	969	982
MS.gene93993.t1	AT5G49660	40.821	975	495	22	1	938	26	955	669
MS.gene93993.t1	AT1G09970	40.714	953	513	20	4	926	28	958	657
MS.gene93993.t1	AT1G09970	40.671	954	513	21	4	926	28	959	652
MS.gene93993.t1	AT1G28440	38.676	967	524	17	1	919	14	959	615
MS.gene93993.t1	AT3G19700	39.776	983	521	24	4	938	24	983	614
MS.gene93993.t1	AT5G65700	38.820	966	518	20	5	920	24	966	602
MS.gene93993.t1	AT5G65700	38.820	966	518	20	5	920	24	966	602
MS.gene93993.t1	AT4G28490	39.256	968	517	21	1	919	19	964	602
MS.gene93993.t1	AT3G49670	39.004	964	511	21	6	920	27	962	594

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Find 145 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCATGGTCATAGAAG+AGG	0.596154	4.2:+70463007	MS.gene93993:CDS
AAATCAATTATCTTTGCATA+AGG	0.425597	4.2:-70462416	None:intergenic
AAATTCTTTCGGTATTAAAC+CGG	0.443082	4.2:-70462672	None:intergenic
AACTCACCATGCAACTTTCT+TGG	0.232774	4.2:+70461363	MS.gene93993:CDS
AACTTTGCGTCCAACTATGA+GGG	0.548996	4.2:+70464101	MS.gene93993:CDS
AAGAATTTGGTCATTGTTCG+AGG	0.473327	4.2:+70462687	MS.gene93993:CDS
AAGACCGATGTATACAGCTT+CGG	0.543205	4.2:+70463871	MS.gene93993:CDS
AAGATCAATCTCTTGCAAAT+TGG	0.298818	4.2:-70461985	None:intergenic
AAGATCATGGTCATAGAAGA+GGG	0.602774	4.2:+70463008	MS.gene93993:CDS
AAGATTTGTGATAAAGATCA+TGG	0.425316	4.2:+70462995	MS.gene93993:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGGAAGCAAGTCAAAAA+TGG	+	chr4.2:70463143-70463162	MS.gene93993:CDS	30.0%
AAGATCAATCTCTTGCAAAT+TGG	-	chr4.2:70461988-70462007	None:intergenic	30.0%
AAGCAAAAGACATTGTTCAT+TGG	+	chr4.2:70463950-70463969	MS.gene93993:CDS	30.0%
AATGGTTCTTGAAATCAAGA+AGG	-	chr4.2:70461302-70461321	None:intergenic	30.0%
ACAGTTATCTACTTTGCATT+TGG	+	chr4.2:70462634-70462653	MS.gene93993:CDS	30.0%
AGCAAAAGACATTGTTCATT+GGG	+	chr4.2:70463951-70463970	MS.gene93993:CDS	30.0%
AGGTACAATTCCTGATAATT+TGG	+	chr4.2:70462817-70462836	MS.gene93993:CDS	30.0%
ATATCAGAGAATCAATTCTC+AGG	+	chr4.2:70462221-70462240	MS.gene93993:CDS	30.0%
ATCAGTAACAATTCTTTGTC+GGG	+	chr4.2:70462365-70462384	MS.gene93993:CDS	30.0%
ATGAGATGGTTACATTTGAT+TGG	+	chr4.2:70463488-70463507	MS.gene93993:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	70461273	70464212	70461273	ID=MS.gene93993
chr4.2	mRNA	70461273	70464212	70461273	ID=MS.gene93993.t1;Parent=MS.gene93993
chr4.2	exon	70461273	70463730	70461273	ID=MS.gene93993.t1.exon1;Parent=MS.gene93993.t1
chr4.2	CDS	70461273	70463730	70461273	ID=cds.MS.gene93993.t1;Parent=MS.gene93993.t1
chr4.2	exon	70463842	70464212	70463842	ID=MS.gene93993.t1.exon2;Parent=MS.gene93993.t1
chr4.2	CDS	70463842	70464212	70463842	ID=cds.MS.gene93993.t1;Parent=MS.gene93993.t1

Gene Sequence

>MS.gene93993

ATGTCCCTAACAAATGAAACACAAGCCCTTCTTGATTTCAAGAACCATTTGAATGACTCATTGAACACTCTAGCTTCATGGAATGAATCAAACTCACCATGCAACTTTCTTGGAATTACATGTGATCCAAGAAATTTGAAAGTTAGAGAAATCTCATTGGATGGTGACTCCCTATCCGGCGAAATTTTTCCATCAATCACAATTCTTCATAGCCTAGAAGTTCTTTCATTACCATCCAATTCCATTTCCGGAAAAATTCCATCAGAAGTAACAAAATTTATAAACCTCAGAGTCTTGAATCTATCAGGAAATGAACTTATTGGAGCAATTCCAGATTTGTCCGGTTTGAAAAATCTTCGAGTTCTTGATCTTTCAGCCAACTACTTTTCCGGTAGTTTCCCTGGCTGGATAGGGAACCTTACCGGACTAGTTTCGCTTGGTCTCGGAGAAAATCTTTACACTGAGAGTGTGATACCAGAGAGTCTTGGAGATTTGAAGAATTTGACTTGGCTTTATCTTGGTGGTTCTCATTTGAAAGGAGAGATTCCAGAATCAATATATGAAATGGAAGCATTGGAGACTTTGGATTTGTCAAGAAACAAGTTATTTGGCAAAATCTCTAGATCGATTTCGAAGTTGAAATATGTTTCCAAAATCGAGTTGTTTTCGAACAATTTGACGGGCGAAATACCAGAAGAACTTGCAGATTTAACCAATTTGCAAGAGATTGATCTTTCTGCAAACAAATTTTTTGGTAAGTTGCCGAAGCAGATTGGTGAAATGAAGAATTTGGTTGTTTTTCAGCTCTATGATAACAGCTTTTCTGGTCAAATTCCTGCTGGATTTGGTAACATGGAAAATCTCACAGGTTTTTCGGTTTACAGAAACGATTTCAACGGTACAATTCCGGAGAATTTTGGCCGATTTTCTCCGCTGAAAAGTATCGACATATCAGAGAATCAATTCTCAGGTTTTTTCCCAAAGTACTTATGTGAGAAAAGAAAGTTGACACTTTTGCTTGCATTGCAAAACAATTTCTCTGGAAATTTTTCTGAGTCTTATGCTTCATGCAAGTCACTAGAAAGATTAAGGATCAGTAACAATTCTTTGTCGGGAATAATTCCGAAAGGTGTTTGGTCACTTCCTTATGCAAAGATAATTGATTTAGGTTTTAATAATTTCAGTGGTGAAGTATCTTCAGAAATTGGTTATTCAACAAATTTAAGTGAAATTGTTTTGATGAATAACAAGTTTTCAGGTAAAGTTCCTTCAGAAATCGGAAAATTGGCGAATTTGGAGAAACTTTACTTGAGTAACAACAATTTCTCAGGTGAAATTCCACATGAAATTGGATTATTAAAACAGTTATCTACTTTGCATTTGGAAGAGAATTCATTAACCGGTTTAATACCGAAAGAATTTGGTCATTGTTCGAGGTTGGTGGATTTGAATCTTGCTTTGAATTCTCTATCAGGAAATATTCCGAACTCGGTTTCGCTAATGAGTTCATTGAATTCTTTGAATTTATCAAGAAACAGATTAACAGGTACAATTCCTGATAATTTGGAGAAAATGAAACTAAGTTCAGTGGATTTTTCTGAGAATTCTCTTTCTGGTGGAATTCCTTTTGGGATTTTGATTATTGGTGGAGAGAAGGCTTTTGTTGGAAACAAAGAACTTTGTGTTGAGCAAATTCCACAAACTTCAATGAAAACTGCTTTGAAGATTTGTGATAAAGATCATGGTCATAGAAGAGGGATTTTTGCTTATAAATATTTGTTGCTCTTTTTCATTGCTGTCATCTTCGCTGCCGTGATTGTGATCCATAGATGCAATAAGAATCGAAAAGAAAAAAATTTACAAAAAGGCGAAATGGAAGCAAGTCAAAAATGGAAACAAGCATCTTTTCACCAAGTGGATATCGATGCAGATGAAGTACGTCATTTGGATGAAGATAATTTAATCGGCTACGGTGGCACCGGAAAGGTTTATCGAGTCAAGTTGAAGAAAACCGGCATAGTGGTGGCCGTAAAGCAACTAGAGAAAGGTTATGGTGTGAATATTTTAGCTGCTGAGATGGAGATTTTAGCGAAAATTAGGCATAAAAATATTCTTAAACTTTATGCTTGTTTTCTTAAAGGAGGATCCAATCTTTTGGTTTTTGAGTATATGCCAAATGGAAATCTTTTCCAAGCTCTTCATAGAGAGGTAGAAGATGAGATGGTTACATTTGATTGGAAGCAAAGGTATAAAATTGCTTTGGGAAGTGCAAAAGGAATTTGCTATTTGCACCATGATTGTTCTCCACGTGTTATTCATAGGGATATCAAATCAAGCAACATTTTGCTTGATGCAAATTATGAAGCAAAAATTGCTGATTTTGGTGTTGCAAGATTTGCTGAAAAATCTCAGATAGGTTATAGTGTTTTTGCTGGCACACATGGCTATATTGCTCCAGGTATGTTTTGAATTTTAATAATGCATTTTGTATGAAATTTTATGCTTTTATGCATATTTAAATAGGTAATAGAACATGGTTAATTTATATAATTTTTTGTCTTCTATGCAGAACTAGCTTATACAACGGAAATAACCGAAAAGACCGATGTATACAGCTTCGGAGTGGTGCTATTAGAGTTGGTATCTGGAAGAGAACCTATTGAAGAAGAATATGGAGAAGCAAAAGACATTGTTCATTGGGTTATGAGTAATCTCAACAATCGCGAAAGTGTACTCAACATTCTTGATGGTAGAGTTGCATCAACACATTGTGTTGAAGATATGATTAAAGTGTTGAAGATTGGTATTAAGTGTACTAATAAGCTTCCAACTTTGCGTCCAACTATGAGGGATGTTGTTAAGATGCTTGTTCATTCTGAACCTTCCAAGAAGAAATCGAAGCCATGTAGTTTTGAGAAAAATGCAGGCTCTTTTCGCTAG

Protein sequence

>MS.gene93993.t1

MSLTNETQALLDFKNHLNDSLNTLASWNESNSPCNFLGITCDPRNLKVREISLDGDSLSGEIFPSITILHSLEVLSLPSNSISGKIPSEVTKFINLRVLNLSGNELIGAIPDLSGLKNLRVLDLSANYFSGSFPGWIGNLTGLVSLGLGENLYTESVIPESLGDLKNLTWLYLGGSHLKGEIPESIYEMEALETLDLSRNKLFGKISRSISKLKYVSKIELFSNNLTGEIPEELADLTNLQEIDLSANKFFGKLPKQIGEMKNLVVFQLYDNSFSGQIPAGFGNMENLTGFSVYRNDFNGTIPENFGRFSPLKSIDISENQFSGFFPKYLCEKRKLTLLLALQNNFSGNFSESYASCKSLERLRISNNSLSGIIPKGVWSLPYAKIIDLGFNNFSGEVSSEIGYSTNLSEIVLMNNKFSGKVPSEIGKLANLEKLYLSNNNFSGEIPHEIGLLKQLSTLHLEENSLTGLIPKEFGHCSRLVDLNLALNSLSGNIPNSVSLMSSLNSLNLSRNRLTGTIPDNLEKMKLSSVDFSENSLSGGIPFGILIIGGEKAFVGNKELCVEQIPQTSMKTALKICDKDHGHRRGIFAYKYLLLFFIAVIFAAVIVIHRCNKNRKEKNLQKGEMEASQKWKQASFHQVDIDADEVRHLDEDNLIGYGGTGKVYRVKLKKTGIVVAVKQLEKGYGVNILAAEMEILAKIRHKNILKLYACFLKGGSNLLVFEYMPNGNLFQALHREVEDEMVTFDWKQRYKIALGSAKGICYLHHDCSPRVIHRDIKSSNILLDANYEAKIADFGVARFAEKSQIGYSVFAGTHGYIAPELAYTTEITEKTDVYSFGVVLLELVSGREPIEEEYGEAKDIVHWVMSNLNNRESVLNILDGRVASTHCVEDMIKVLKIGIKCTNKLPTLRPTMRDVVKMLVHSEPSKKKSKPCSFEKNAGSFR