AlfalfaGEDB | MS.gene93994

M. sativa cultivar XinJiangDaYe / MS.gene93994

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00560.36 PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93994.t1	RHN59754.1	91.6	941	32	1	1	894	29	969	3.50E-210	741.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93994.t1	Q9C7T7	42.8	395	166	5	548	883	576	969	3.0e-77	291.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93994.t1	A0A396I687	91.6	941	32	1	1	894	29	969	2.5e-210	741.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049356	MS.gene93994	0.832602	8.61E-56	-1.69E-46
MS.gene051360	MS.gene93994	0.824647	7.21E-54	-1.69E-46
MS.gene055666	MS.gene93994	0.804493	2.10E-49	-1.69E-46
MS.gene058120	MS.gene93994	0.811845	5.71E-51	-1.69E-46
MS.gene059674	MS.gene93994	0.812033	5.20E-51	-1.69E-46
MS.gene060927	MS.gene93994	0.809671	1.69E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene014576	MS.gene93994	PPI
MS.gene07592	MS.gene93994	PPI
MS.gene21449	MS.gene93994	PPI
MS.gene23932	MS.gene93994	PPI
MS.gene40223	MS.gene93994	PPI
MS.gene74888	MS.gene93994	PPI
MS.gene93994	MS.gene43498	PPI
MS.gene93994	MS.gene09640	PPI
MS.gene93994	MS.gene69092	PPI
MS.gene93994	MS.gene52824	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93994.t1	MTR_4g035200	88.522	636	50	1	1	636	29	641	0.0	1103
MS.gene93994.t1	MTR_4g035200	91.964	448	36	0	189	636	1	448	0.0	822
MS.gene93994.t1	MTR_4g035200	29.765	383	242	5	69	450	1	357	1.38e-43	165
MS.gene93994.t1	MTR_4g035200	31.250	352	239	3	48	398	4	353	2.53e-43	164
MS.gene93994.t1	MTR_4g088320	36.114	983	505	22	2	883	23	983	0.0	551
MS.gene93994.t1	MTR_2g090710	36.580	965	497	19	1	872	21	963	2.19e-178	542
MS.gene93994.t1	MTR_5g014700	36.439	966	509	23	5	883	26	973	2.23e-177	540
MS.gene93994.t1	MTR_5g014720	34.970	998	501	19	1	872	20	995	5.74e-175	533
MS.gene93994.t1	MTR_4g097880	35.959	965	509	24	5	880	26	970	1.08e-174	533
MS.gene93994.t1	MTR_1g080440	34.886	966	537	14	5	880	28	991	3.12e-173	529

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93994.t1	AT1G72180	50.799	939	402	6	4	883	32	969	0.0	904
MS.gene93994.t1	AT5G49660	38.517	971	476	22	1	891	26	955	0.0	609
MS.gene93994.t1	AT3G19700	37.755	980	498	22	4	891	24	983	0.0	562
MS.gene93994.t1	AT1G28440	36.515	964	502	18	1	872	14	959	0.0	556
MS.gene93994.t1	AT5G65700	37.083	960	496	20	5	873	24	966	0.0	554
MS.gene93994.t1	AT5G65700	37.083	960	496	20	5	873	24	966	0.0	554
MS.gene93994.t1	AT1G09970	36.897	954	501	22	4	879	28	958	0.0	552
MS.gene93994.t1	AT1G09970	36.859	955	501	23	4	879	28	959	0.0	548
MS.gene93994.t1	AT3G49670	37.265	958	489	21	6	873	27	962	1.81e-179	545
MS.gene93994.t1	AT5G65710	35.773	970	493	17	14	872	36	986	1.37e-175	535

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Find 142 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCATGGTCATAGAAG+AGG	0.596154	4.2:-70416941	MS.gene93994:CDS
AAATCAATTATCTTTGCATA+AGG	0.425597	4.2:+70417532	None:intergenic
AAATTCTTTCGGTATTAAAC+CGG	0.443082	4.2:+70417276	None:intergenic
AACTCACCATGCAACTTTCT+TGG	0.232774	4.2:-70418585	MS.gene93994:CDS
AACTTTGCGTCCAACTATGA+GGG	0.548996	4.2:-70415848	MS.gene93994:CDS
AAGAATTTGGTCATTGTTCG+AGG	0.473327	4.2:-70417261	MS.gene93994:CDS
AAGACCGATGTATACAGCTT+CGG	0.543205	4.2:-70416078	MS.gene93994:CDS
AAGATCAATCTCTTGCAAAT+TGG	0.298818	4.2:+70417963	None:intergenic
AAGATCATGGTCATAGAAGA+GGG	0.602774	4.2:-70416940	MS.gene93994:CDS
AAGATTTGTGATAAAGATCA+TGG	0.425316	4.2:-70416953	MS.gene93994:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGGAAGCAAGTCAAAAA+TGG	-	chr4.2:70417629-70417648	MS.gene93994:CDS	30.0%
AAGATCAATCTCTTGCAAAT+TGG	+	chr4.2:70416474-70416493	None:intergenic	30.0%
AAGCAAAAGACATTGTTCAT+TGG	-	chr4.2:70418435-70418454	MS.gene93994:CDS	30.0%
AATGGTTCTTGAAATCAAGA+AGG	+	chr4.2:70415788-70415807	None:intergenic	30.0%
ACAGTTATCTACTTTGCATT+TGG	-	chr4.2:70417120-70417139	MS.gene93994:CDS	30.0%
AGCAAAAGACATTGTTCATT+GGG	-	chr4.2:70418436-70418455	MS.gene93994:CDS	30.0%
AGGTACAATTCCTGATAATT+TGG	-	chr4.2:70417303-70417322	MS.gene93994:CDS	30.0%
ATATCAGAGAATCAATTCTC+AGG	-	chr4.2:70416707-70416726	MS.gene93994:CDS	30.0%
ATCAGTAACAATTCTTTGTC+GGG	-	chr4.2:70416851-70416870	MS.gene93994:CDS	30.0%
ATGAGATGGTTACATTTGAT+TGG	-	chr4.2:70417973-70417992	MS.gene93994:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	70415759	70418697	70415759	ID=MS.gene93994
chr4.2	mRNA	70415759	70418697	70415759	ID=MS.gene93994.t1;Parent=MS.gene93994
chr4.2	exon	70416645	70418697	70416645	ID=MS.gene93994.t1.exon1;Parent=MS.gene93994.t1
chr4.2	CDS	70416645	70418697	70416645	ID=cds.MS.gene93994.t1;Parent=MS.gene93994.t1
chr4.2	exon	70416241	70416504	70416241	ID=MS.gene93994.t1.exon2;Parent=MS.gene93994.t1
chr4.2	CDS	70416241	70416504	70416241	ID=cds.MS.gene93994.t1;Parent=MS.gene93994.t1
chr4.2	exon	70415759	70416129	70415759	ID=MS.gene93994.t1.exon3;Parent=MS.gene93994.t1
chr4.2	CDS	70415759	70416129	70415759	ID=cds.MS.gene93994.t1;Parent=MS.gene93994.t1

Gene Sequence

>MS.gene93994

ATGTCCCTAACAAATGAAACACAAGCCCTTCTTGATTTCAAGAACCATTTGAATGACTCATTGAACACTCTAGCTTCATGGAATGAATCAAACTCACCATGCAACTTTCTTGGAATTACATGTGATCCAAGAAATTTGAAAGTTAGAGAAATCTCATTGGATGGTGACTCCCTATCCGGCGAAATTTTTCCATCAATCACAATTCTTCATAGCCTAGAAGTTCTTTCATTACCATCCAATTCCATTTCCGGAAAAATTCCATCAGAAGTAACAAAATTTATAAACCTCAGAGTCTTGAATCTATCAGGAAATGAACTTATTGGAGCAATTCCAGATTTGTCCGGTTTGAAAAATCTTCGAGTTCTTGATCTTTCAGCCAACTACTTTTCCGGTAGTTTCCCTGGCTGGATAGGGAACCTTACCGGACTAGTTTCGCTTGGTCTCGGAGAAAATCTTTACACTGAGAGTGTGATACCAGAGAGTCTTGGAGATTTGAAGAATTTGACTTGGCTTTATCTTGGTGGTTCTCATTTGAAAGGAGAGATTCCAGAATCAATATATGAAATGGAAGCATTGGAGACTTTGGATTTGTCAAGAAACAAGTTATTTGGCAAAATCTCTAGATCGATTTCGAAGTTGAAATATGTTTCCAAAATCGAGTTGTTTTCGAACAATTTGACGGGCGAAATACCAGAAGAACTTGCAGATTTAACCAATTTGCAAGAGATTGATCTTTCTGCAAACAAATTTTTTGGTAAGTTGCCGAAGCAGATTGGTGAAATGAAGAATTTGGTTGTTTTTCAGCTCTATGATAACAGCTTTTCTGGTCAAATTCCTGCTGGATTTGGTAACATGGAAAATCTCACAGGTTTTTCGGTTTACAGAAACGATTTCAACGGTACAATTCCGGAGAATTTTGGCCGATTTTCTCCGCTGAAAAGTATCGACATATCAGAGAATCAATTCTCAGGTTTTTTCCCAAAGTACTTATGTGAGAAAAGAAAGTTGACACTTTTGCTTGCATTGCAAAACAATTTCTCTGGAAATTTTTCTGAGTCTTATGCTTCATGCAAGTCACTAGAAAGATTAAGGATCAGTAACAATTCTTTGTCGGGAATAATTCCGAAAGGTGTTTGGTCACTTCCTTATGCAAAGATAATTGATTTAGGTTTTAATAATTTCAGTGGTGAAGTATCTTCAGAAATTGGTTATTCAACAAATTTAAGTGAAATTGTTTTGATGAATAACAAGTTTTCAGGTAAAGTTCCTTCAGAAATCGGAAAATTGGCGAATTTGGAGAAACTTTACTTGAGTAACAACAATTTCTCAGGTGAAATTCCACATGAAATTGGATTATTAAAACAGTTATCTACTTTGCATTTGGAAGAGAATTCATTAACCGGTTTAATACCGAAAGAATTTGGTCATTGTTCGAGGTTGGTGGATTTGAATCTTGCTTTGAATTCTCTATCAGGAAATATTCCGAACTCGGTTTCGCTAATGAGTTCATTGAATTCTTTGAATTTATCAAGAAACAGATTAACAGGTACAATTCCTGATAATTTGGAGAAAATGAAACTAAGTTCAGTGGATTTTTCTGAGAATTCTCTTTCTGGTGGAATTCCTTTTGGGATTTTGATTATTGGTGGAGAGAAGGCTTTTGTTGGAAACAAAGAACTTTGTGTTGAGCAAATTCCACAAACTTCAATGAAAACTGCTTTGAAGATTTGTGATAAAGATCATGGTCATAGAAGAGGGATTTTTGCTTATAAATATTTGTTGCTCTTTTTCATTGCTGTCATCTTCGCTGCCGTGATTGTGATCCATAGATGCAATAAGAATCGAAAAGAAAAAAATTTACAAAAAGGCGAAATGGAAGCAAGTCAAAAATGGAAACAAGCATCTTTTCACCAAGTGGATATCGATGCAGATGAAGTACGTCATTTGGATGAAGATAATTTAATCGGCTACGGTGGCACCGGAAAGGTTTATCGAGTCAAGTTGAAGAAAACCGGCATAGTGGTGGCCGTAAAGCAACTAGAGAAAGGTTATGGTGTGAATATTTTAGCTGCTGAGATGGAGATTTTAGCGAAAATTAGGCATAAAAATATTCTTAAACTTTATGCTTGTTTTCTTAAAGGAGATCCAATCTTTTGGTTTTTGAGTATATGCCAAATGGAAATCTTTTCCAAGCTCTTCATAGAGAGGTAGAAGATGAGATGGTTACATTTGATTGGAAGCAAAGGTATAAAATTGCTTTGGGAAGTGCAAAAGGAATTTGCTATTTGCACCATGATTGTTCTCCACGTGTTATTCATAGGGATATCAAATCAAGCAACATTTTGCTTGATGCAAATTATGAAGCAAAAATTGCTGATTTTGGTGTTGCAAGATTTGCTGAAAAATCTCAGATAGGTTATAGTGTTTTTGCTGGCACACATGGCTATATTGCTCCAGGTATGTTTTGAATTTTAATAATGCATTTTGTATGAAATTTTATGCTTTTATGCATATTTAAATAGGTAATAGAACATGGTTAATTTATATAATTTTTTGTCTTCTATGCAGAACTAGCTTATACAACGGAAATAACCGAAAAGACCGATGTATACAGCTTCGGAGTGGTGCTATTAGAGTTGGTATCTGGAAGAGAACCTATTGAAGAAGAATATGGAGAAGCAAAAGACATTGTTCATTGGGTTATGAGTAATCTCAACAATCGCGAAAGTGTACTCAACATTCTTGATGGTAGAGTTGCATCAACACATTGTGTTGAAGATATGATTAAAGTGTTGAAGATTGGTATTAAGTGTACTAATAAGCTTCCAACTTTGCGTCCAACTATGAGGGATGTTGTTAAGATGCTTGTTCATTCTGAACCTTCCAAGAAGAAATCGAAGCCATGTAGTTTTGAGAAAAATGCAGGCTCTTTTCGCTAG

Protein sequence

>MS.gene93994.t1

MSLTNETQALLDFKNHLNDSLNTLASWNESNSPCNFLGITCDPRNLKVREISLDGDSLSGEIFPSITILHSLEVLSLPSNSISGKIPSEVTKFINLRVLNLSGNELIGAIPDLSGLKNLRVLDLSANYFSGSFPGWIGNLTGLVSLGLGENLYTESVIPESLGDLKNLTWLYLGGSHLKGEIPESIYEMEALETLDLSRNKLFGKISRSISKLKYVSKIELFSNNLTGEIPEELADLTNLQEIDLSANKFFGKLPKQIGEMKNLVVFQLYDNSFSGQIPAGFGNMENLTGFSVYRNDFNGTIPENFGRFSPLKSIDISENQFSGFFPKYLCEKRKLTLLLALQNNFSGNFSESYASCKSLERLRISNNSLSGIIPKGVWSLPYAKIIDLGFNNFSGEVSSEIGYSTNLSEIVLMNNKFSGKVPSEIGKLANLEKLYLSNNNFSGEIPHEIGLLKQLSTLHLEENSLTGLIPKEFGHCSRLVDLNLALNSLSGNIPNSVSLMSSLNSLNLSRNRLTGTIPDNLEKMKLSSVDFSENSLSGGIPFGILIIGGEKAFVGNKELCVEQIPQTSMKTALKICDKDHGHRRGIFAYKYLLLFFIAVIFAAVIVIHRCNKNRKEKNLQKGEMEASQKWKQASFHQVDIDADEVRHLDEDNLIGYGGTGKVYRVKLKKTGIVVAVKQLEKGYALHREVEDEMVTFDWKQRYKIALGSAKGICYLHHDCSPRVIHRDIKSSNILLDANYEAKIADFGVARFAEKSQIGYSVFAGTHGYIAPELAYTTEITEKTDVYSFGVVLLELVSGREPIEEEYGEAKDIVHWVMSNLNNRESVLNILDGRVASTHCVEDMIKVLKIGIKCTNKLPTLRPTMRDVVKMLVHSEPSKKKSKPCSFEKNAGSFR