AlfalfaGEDB | MS.gene40223

M. sativa cultivar XinJiangDaYe / MS.gene40223

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40223.t1	XP_013462074.1	95.8	987	40	1	1	987	1	986	0.00E+00	1103.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40223.t1	F4I2N7	68.8	980	280	12	12	985	18	977	1.2e-143	512.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40223.t1	A0A072V233	95.8	987	40	1	1	987	1	986	0.0e+00	1103.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051121	MS.gene40223	0.814099	1.83E-51	-1.69E-46
MS.gene053272	MS.gene40223	-0.800881	1.17E-48	-1.69E-46
MS.gene05686	MS.gene40223	0.801996	6.92E-49	-1.69E-46
MS.gene060522	MS.gene40223	0.811715	6.09E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene014577	MS.gene40223	PPI
MS.gene016169	MS.gene40223	PPI
MS.gene071051	MS.gene40223	PPI
MS.gene23931	MS.gene40223	PPI
MS.gene33036	MS.gene40223	PPI
MS.gene40223	MS.gene52825	PPI
MS.gene40223	MS.gene07592	PPI
MS.gene40223	MS.gene93890	PPI
MS.gene40223	MS.gene40224	PPI
MS.gene40223	MS.gene74888	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene40223.t1	MTR_3g110860	96.859	987	30	1	1	987	1	986	1930
MS.gene40223.t1	MTR_3g110860	96.864	861	26	1	1	861	1	860	1674
MS.gene40223.t1	MTR_2g010470	54.545	979	422	8	2	977	21	979	1026
MS.gene40223.t1	MTR_4g088320	41.171	991	526	14	5	964	6	970	677
MS.gene40223.t1	MTR_2g090710	41.667	984	499	18	20	964	20	967	668
MS.gene40223.t1	MTR_2g014560	41.201	949	504	12	46	965	42	965	666
MS.gene40223.t1	MTR_3g110840	42.122	971	494	21	19	968	24	947	630
MS.gene40223.t1	MTR_5g014720	38.155	1030	524	19	9	962	5	997	629
MS.gene40223.t1	MTR_4g097880	37.108	989	535	19	16	962	19	962	563
MS.gene40223.t1	MTR_5g014700	37.269	974	533	18	28	962	31	965	557

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene40223.t1	AT1G09970	58.631	979	382	10	11	985	17	976	1127
MS.gene40223.t1	AT1G09970	58.571	980	382	11	11	985	17	977	1123
MS.gene40223.t1	AT3G19700	51.988	981	433	12	6	965	5	968	939
MS.gene40223.t1	AT5G49660	42.211	950	481	19	35	965	38	938	682
MS.gene40223.t1	AT1G28440	39.171	965	533	15	27	962	22	961	656
MS.gene40223.t1	AT1G72180	39.329	984	543	16	4	966	14	964	638
MS.gene40223.t1	AT4G28490	38.703	987	540	19	16	966	16	973	600
MS.gene40223.t1	AT5G65710	37.736	1007	524	20	19	962	22	988	592
MS.gene40223.t1	AT5G25930	38.360	988	525	23	16	960	18	964	568
MS.gene40223.t1	AT3G49670	37.868	985	533	18	17	962	19	963	562

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Find 244 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGGACATAGTAAGT+TGG	0.490825	3.2:-88799343	MS.gene40223:CDS
AAAAGTGATGTGTATAGTTT+CGG	0.404126	3.2:-88799422	MS.gene40223:CDS
AAAATTGAGGTCAATGACAA+AGG	0.598228	3.2:-88799095	MS.gene40223:CDS
AAACAAGGACATAGTAAGTT+GGG	0.469406	3.2:-88799342	MS.gene40223:CDS
AAACAGGTGCTGTAGCTTTC+CGG	0.346687	3.2:+88801172	None:intergenic
AAACCTAGGATTGCTGATTT+TGG	0.228143	3.2:-88799801	MS.gene40223:CDS
AAAGATATTCCTTCGTCCTT+GGG	0.376783	3.2:-88800749	MS.gene40223:CDS
AAATTCAGAGAATTTAAAGC+CGG	0.588036	3.2:+88800719	None:intergenic
AAATTGGTTGGAATTGTTAT+TGG	0.310697	3.2:-88799137	MS.gene40223:CDS
AACTGAATTTGGAGAAAACA+AGG	0.611302	3.2:-88799357	MS.gene40223:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAAGGACATAGTAAGT+TGG	-	chr3.2:88802024-88802043	MS.gene40223:CDS	30.0%
AAAATTGAGGTCAATGACAA+AGG	-	chr3.2:88802272-88802291	MS.gene40223:CDS	30.0%
AAACAAGGACATAGTAAGTT+GGG	-	chr3.2:88802025-88802044	MS.gene40223:CDS	30.0%
AACTGAATTTGGAGAAAACA+AGG	-	chr3.2:88802010-88802029	MS.gene40223:CDS	30.0%
AAGTTACAGTTCTTGGATTT+AGG	-	chr3.2:88799427-88799446	MS.gene40223:CDS	30.0%
AATTAGAAGGAAATCTCTCT+GGG	-	chr3.2:88799893-88799912	MS.gene40223:CDS	30.0%
AATTTCAAGGTCGTTTGATT+TGG	+	chr3.2:88799146-88799165	None:intergenic	30.0%
ACAATTCCAACCAATTTACA+AGG	+	chr3.2:88802227-88802246	None:intergenic	30.0%
ACTTGAAGTTGAAGAAAAAG+GGG	-	chr3.2:88800952-88800971	MS.gene40223:CDS	30.0%
AGTAAACACCCATAAAAGAA+AGG	+	chr3.2:88800935-88800954	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	88799085	88802304	88799085	ID=MS.gene40223
chr3.2	mRNA	88799085	88802304	88799085	ID=MS.gene40223.t1;Parent=MS.gene40223
chr3.2	exon	88799721	88802304	88799721	ID=MS.gene40223.t1.exon1;Parent=MS.gene40223.t1
chr3.2	CDS	88799721	88802304	88799721	ID=cds.MS.gene40223.t1;Parent=MS.gene40223.t1
chr3.2	exon	88799085	88799473	88799085	ID=MS.gene40223.t1.exon2;Parent=MS.gene40223.t1
chr3.2	CDS	88799085	88799473	88799085	ID=cds.MS.gene40223.t1;Parent=MS.gene40223.t1

Gene Sequence

>MS.gene40223

ATGTTTTCCTCGCGAGTTTTCTCTCTTCTCCTTCTTCTGTTCTCACTACTCACAATTACCAAATCAAACGACCTTGAAATTCTACTAAACCTTAAAACCTCCCTCGAAAATTCAAACACCAAAGATTTCTTCAACTCATGGAATGCAAACAGTTCCATTTGCAGTTTCCATGGAATCACCTGCAACTCCATCAACTCCGTCACAGAAATCAACCTTTCTAATAAACACCTCTCAGGAATTCTCCCAATAGACTCACTCTGCAACCTTCAATCTCTCACAAAACTCGTCTTAGGTTTCAACAGTTTCCATGGCAGAGTCAATGAAAGCCTTAGAAATTGTGTCAAGTTACAGTTCTTGGATTTAGGGAACAATCATTTCTCAGGACCTTTTCCAGATATTTCACCTCTTCATGAACTTCAATACCTTTACGTAAACCAAAGTGGATTTTCTGGAACTTTTCCATGGCAATCTCTGTTGAATATGACGGGCTTGTTACAGTTAAGCGTTGGAGACAACCCTTTCGATCTAACGCCGTTTCCTGAAGAGATTTTAAGTCTCAAGAAACTGAATTGGCTTTACATGAGTAACTGCAACCTCGGAGGGAAATTACCAGTTGGAATCGGTAACTTAACGGATTTAACAGAATTAGAATTCGCCGATAATTTCATTACCGGAGAATTTCCCGGTGAGATTGCCAACCTTCACAAACTCTGGCAGCTTGAATTCTACAACAATTCTTTCACCGGGAAGATTCCGATTGGGTTGAGAAATCTCACAGGACTCGAGTATTTGGACGGATCAATGAATCAATTAGAAGGAAATCTCTCTGGGATAAGGTTTTTAAGTAATCTAATTTCACTTCATTTCTTCGAAAACAAATTATCCGGCGAGATTCCACCAGAGATAGGTGAGTTTAAAAACCTCCGAGAACTGTCTCTTTACAGAAACAGATTAACAGGTCCAATTCCTCAGAAGACTGGATCATGGTCAGAATTTGAATACATCGACGTTTCGGAGAATTTCTTAACGGGTTCAATTCCACCAAACATGTGCAACAAAGGAAAAATGTACGCACTTCTTGTTCTTCAGAACAATCTCACAGGTAAGATACCGGAAAGCTACAGCACCTGTTTGAGTTTAGAACGACTCAGAGTGAGTAGAAACTCGCTCTCAGGTACCGTTCCTTCCGGTATTTGGGGATTACCCAATGTTCAAGTAATTGATATTGAATTGAATCAGTTAGAAGGTTCTGTTAGTTCAGAGATTCAAAAAGCGAATAAACTTGCTAGTATATTAGCAAGGAGTAACCGGTTAACCGGTGAAATACCGGAAGAGATTTCTAAAGCAACGTCGTTGGTATCAATTGATCTTAGTAACAATCAAATTTCTGGGAACATTCCAGAAGGTATTGGTGAACTTAAACAACTTGGTAACCTGCATTTGCAGGGTAACAAGTTAACAGGGGTAATTCCAGAGTCTTTAGGTTATTGTAACTCACTTAATGACGTTGATCTTTCAAGAAATGAACTCTCGAAAGATATTCCTTCGTCCTTGGGTTTGTTACCGGCTTTAAATTCTCTGAATTTCTCAGAGAATGAACTTTCCGGTAAAATACCGAAGAGTTTAGGTTCATTGAAGTTGAGTCTCTTTGATCTTTCGCATAACCGATTATCCGGTGAAATTCCAATAGGTTTGACTATTCAAGCTTACAATGGAAGCCTCACCGGAAACCCGGGTTTATGCACGCTTGATGCTATCGGTTCCTTCAAGCGTTGTTCTGAGAATAGTGGCTTGTCAAAAGATGTCCGTGCCCTTGTTCTTTGTTTCACTATAATTTTGGTTTTGGTCCTTTCTTTTATGGGTGTTTACTTGAAGTTGAAGAAAAAGGGGAAGGTAGAAAAGGGAGAGGGTAGTAAATATGGAAGAGAACGTTCCTTGAAGGAAGAATCATGGGATGTGAAATCTTTCCACGTGCTAAGTTTCACAGAAGATGAGATTCTTGATTCTGTTAAGCAAGAGAATATAATAGGAACAGGAGGTTCAGGGAATGTTTATAGAGTCACACTTGCAAATGGAAAAGAACTTGCTGTTAAGCATATTTGGAACACTAATTTCGGGTCCCGGAAAAAGTCGTGGAGCAGCACACCGATGCTCGCGAACCGTGTTGGTAGTGGTGGTTCAAGGTCGAAGGAATTCGATGCGGAGGTTCAGGCGTTGAGTTCAATAAGACATGTGAATGTAGTGAAGCTTTATTGTAGTATAACGAGTGAGGATTCGAGTCTTTTGGTTTATGAGTACTTGCCTAATGGAAGTTTGTGGGATAGGCTTCATAGTAGTGGCAAGATGGAGCTTGATTGGGAAACAAGGTATGAAATTGCTGTTGGTGCTGCAAAAGGGTTAGAGTATTTGCATCATGGGTGTGAAAGGCCTGTGATTCATAGGGATGTTAAATCAAGTAACATTTTGTTAGATGAGTTTTTGAAACCTAGGATTGCTGATTTTGGTCTTGCTAAGATTGTTCATGCCGATGTTGTTAAGGATTCTACTCGTATCATCGCCGGAACTCATGGCTACATCGCTCCCGGTAAGGAACTAGCTAGTAATTTTTTTAAGTTGTATTTACATTGTGAACTTTGATATTGCAACAAAATATGAACAAATACAATTGATGCATTTAAAATTTTACTTGCGATGCAGAGGCCTCTAAAATCTTTATTGTAGTTGCATATTACATTTTAGAATTATGACTAAAACTATAATATCATGTCCCTTTTAATTTATTTATTTTCCTTATTATGATTATTGATGTGATTTGTTTGAATTGAGTGCAGAATATGGTTACACATATAGAGTGAATGAGAAAAGTGATGTGTATAGTTTCGGAGTGGTGTTGATGGAGCTTGTAACTGGTAAAAGGCCAAGTGAAACTGAATTTGGAGAAAACAAGGACATAGTAAGTTGGGTTCATGGGAAAACAAGGAGCAAGGAGAAGTTTATGAGTGTGGTGGATTCGAGAATTCCGGAGATGTATAAAGAGGAAGCTTGTAAGGTATTGAGAACTGCAGTTCTTTGTACTGCAACTCTTCCTGCTATGAGACCAAGTATGAGAGCTGTGGTTCAAAAACTTGAGGATGCTGCACCTTGTAAATTGGTTGGAATTGTTATTGGCAAAGATGGGAGTGGAAAGAAAATTGAGGTCAATGACAAAGGAAGTGTTTAA

Protein sequence

>MS.gene40223.t1

MFSSRVFSLLLLLFSLLTITKSNDLEILLNLKTSLENSNTKDFFNSWNANSSICSFHGITCNSINSVTEINLSNKHLSGILPIDSLCNLQSLTKLVLGFNSFHGRVNESLRNCVKLQFLDLGNNHFSGPFPDISPLHELQYLYVNQSGFSGTFPWQSLLNMTGLLQLSVGDNPFDLTPFPEEILSLKKLNWLYMSNCNLGGKLPVGIGNLTDLTELEFADNFITGEFPGEIANLHKLWQLEFYNNSFTGKIPIGLRNLTGLEYLDGSMNQLEGNLSGIRFLSNLISLHFFENKLSGEIPPEIGEFKNLRELSLYRNRLTGPIPQKTGSWSEFEYIDVSENFLTGSIPPNMCNKGKMYALLVLQNNLTGKIPESYSTCLSLERLRVSRNSLSGTVPSGIWGLPNVQVIDIELNQLEGSVSSEIQKANKLASILARSNRLTGEIPEEISKATSLVSIDLSNNQISGNIPEGIGELKQLGNLHLQGNKLTGVIPESLGYCNSLNDVDLSRNELSKDIPSSLGLLPALNSLNFSENELSGKIPKSLGSLKLSLFDLSHNRLSGEIPIGLTIQAYNGSLTGNPGLCTLDAIGSFKRCSENSGLSKDVRALVLCFTIILVLVLSFMGVYLKLKKKGKVEKGEGSKYGRERSLKEESWDVKSFHVLSFTEDEILDSVKQENIIGTGGSGNVYRVTLANGKELAVKHIWNTNFGSRKKSWSSTPMLANRVGSGGSRSKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHSSGKMELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVHADVVKDSTRIIAGTHGYIAPEYGYTYRVNEKSDVYSFGVVLMELVTGKRPSETEFGENKDIVSWVHGKTRSKEKFMSVVDSRIPEMYKEEACKVLRTAVLCTATLPAMRPSMRAVVQKLEDAAPCKLVGIVIGKDGSGKKIEVNDKGSV