AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52948

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52948.t1 MTR_1g076150 96.117 103 2 2 82 184 106 206 8.92e-64 195
MS.gene52948.t1 MTR_1g076150 60.891 202 51 8 3 184 65 258 1.07e-63 197
MS.gene52948.t1 MTR_1g076150 89.888 89 9 0 1 89 10 98 2.43e-54 173
MS.gene52948.t1 MTR_1g043080 44.000 250 68 7 2 184 11 255 2.54e-55 176
MS.gene52948.t1 MTR_1g043050 42.105 247 76 6 2 184 11 254 2.11e-50 163
MS.gene52948.t1 MTR_7g115650 41.837 196 93 5 1 176 10 204 2.36e-47 154
MS.gene52948.t1 MTR_4g478180 76.623 77 18 0 2 78 12 88 2.23e-39 137
MS.gene52948.t1 MTR_7g096930 67.416 89 29 0 1 89 10 98 2.35e-39 135
MS.gene52948.t1 MTR_1g100653 77.922 77 17 0 2 78 11 87 3.76e-39 135
MS.gene52948.t1 MTR_5g007370 44.693 179 83 5 2 166 11 187 1.38e-38 134
MS.gene52948.t1 MTR_4g091490 70.455 88 26 0 2 89 12 99 2.17e-38 135
MS.gene52948.t1 MTR_2g011660 69.318 88 27 0 2 89 12 99 2.58e-38 134
MS.gene52948.t1 MTR_3g074520 65.909 88 30 0 2 89 11 98 4.03e-38 134
MS.gene52948.t1 MTR_8g031360 65.934 91 30 1 1 90 11 101 6.91e-38 132
MS.gene52948.t1 MTR_0063s0090 72.727 77 21 0 2 78 11 87 1.97e-37 129
MS.gene52948.t1 MTR_2g067420 70.115 87 26 0 3 89 14 100 2.21e-37 131
MS.gene52948.t1 MTR_7g076740 73.077 78 20 1 2 78 11 88 3.38e-37 130
MS.gene52948.t1 MTR_7g117730 69.231 78 24 0 1 78 10 87 1.34e-36 127
MS.gene52948.t1 MTR_8g027345 67.949 78 25 0 1 78 10 87 2.87e-36 128
MS.gene52948.t1 MTR_4g121460 73.077 78 21 0 1 78 10 87 3.84e-36 129
MS.gene52948.t1 MTR_6g012690 69.231 78 24 0 1 78 10 87 5.82e-36 128
MS.gene52948.t1 MTR_7g011170 64.706 85 30 0 1 85 10 94 8.09e-36 127
MS.gene52948.t1 MTR_5g007300 71.429 77 22 0 2 78 63 139 4.15e-35 120
MS.gene52948.t1 MTR_2g089620 65.169 89 31 0 2 90 11 99 4.71e-35 125
MS.gene52948.t1 MTR_3g083540 66.667 78 26 0 1 78 39 116 4.73e-35 125
MS.gene52948.t1 MTR_5g029840 65.169 89 31 0 1 89 10 98 5.28e-35 125
MS.gene52948.t1 MTR_4g073420 74.324 74 19 0 5 78 14 87 7.12e-35 124
MS.gene52948.t1 MTR_4g082290 63.529 85 31 0 1 85 10 94 1.17e-34 126
MS.gene52948.t1 MTR_2g089450 68.831 77 24 0 2 78 11 87 1.89e-34 122
MS.gene52948.t1 MTR_6g012180 68.831 77 24 0 2 78 11 87 3.60e-34 123
MS.gene52948.t1 MTR_5g042030 59.302 86 35 0 1 86 5 90 5.13e-34 122
MS.gene52948.t1 MTR_4g125520 67.532 77 25 0 2 78 11 87 5.86e-34 122
MS.gene52948.t1 MTR_2g034790 65.882 85 29 0 1 85 10 94 8.64e-34 122
MS.gene52948.t1 MTR_0251s0050 47.899 119 49 1 2 107 12 130 9.40e-34 120
MS.gene52948.t1 MTR_3g039990 59.140 93 37 1 1 93 11 102 1.20e-33 121
MS.gene52948.t1 MTR_7g010210 63.095 84 31 0 2 85 11 94 1.65e-33 120
MS.gene52948.t1 MTR_0008s0390 60.714 84 33 0 2 85 12 95 1.78e-33 120
MS.gene52948.t1 MTR_0140s0030 65.385 78 27 0 1 78 11 88 1.96e-33 121
MS.gene52948.t1 MTR_0489s0020 65.385 78 27 0 1 78 11 88 1.96e-33 121
MS.gene52948.t1 MTR_7g111290 63.218 87 32 0 3 89 12 98 1.97e-33 122
MS.gene52948.t1 MTR_7g010210 67.532 77 25 0 2 78 11 87 2.04e-33 121
MS.gene52948.t1 MTR_1g085040 63.218 87 32 0 3 89 12 98 2.43e-33 122
MS.gene52948.t1 MTR_0008s0280 62.500 80 30 0 2 81 11 90 2.56e-33 118
MS.gene52948.t1 MTR_8g095390 67.500 80 26 0 5 84 14 93 4.17e-33 120
MS.gene52948.t1 MTR_2g089420 58.333 96 36 1 2 93 10 105 6.93e-33 122
MS.gene52948.t1 MTR_3g097450 70.270 74 22 0 5 78 14 87 7.70e-33 119
MS.gene52948.t1 MTR_0008s0470 58.333 84 35 0 2 85 12 95 7.97e-33 119
MS.gene52948.t1 MTR_4g082230 62.651 83 31 0 3 85 12 94 2.09e-32 120
MS.gene52948.t1 MTR_7g087130 59.140 93 37 1 1 93 10 101 1.63e-31 116
MS.gene52948.t1 MTR_2g064160 65.789 76 26 0 3 78 11 86 2.14e-31 115
MS.gene52948.t1 MTR_7g110830 60.920 87 34 0 3 89 12 98 3.14e-31 116
MS.gene52948.t1 MTR_8g017500 65.789 76 26 0 3 78 12 87 5.93e-31 115
MS.gene52948.t1 MTR_3g065440 60.000 85 34 0 1 85 10 94 6.57e-31 114
MS.gene52948.t1 MTR_2g099740 67.105 76 25 0 3 78 12 87 7.67e-31 115
MS.gene52948.t1 MTR_5g078140 58.427 89 37 0 1 89 10 98 9.18e-31 114
MS.gene52948.t1 MTR_8g017440 65.789 76 26 0 3 78 12 87 9.58e-31 114
MS.gene52948.t1 MTR_1g085640 59.770 87 35 0 3 89 12 98 1.14e-30 115
MS.gene52948.t1 MTR_8g017540 65.789 76 26 0 3 78 58 133 1.26e-30 115
MS.gene52948.t1 MTR_3g461490 63.158 76 28 0 3 78 12 87 1.81e-30 113
MS.gene52948.t1 MTR_4g102380 57.303 89 38 0 1 89 10 98 2.16e-30 112
MS.gene52948.t1 MTR_5g079670 64.474 76 27 0 3 78 11 86 2.28e-30 110
MS.gene52948.t1 MTR_1g112760 59.770 87 35 0 3 89 13 99 3.90e-30 110
MS.gene52948.t1 MTR_5g010020 62.651 83 31 0 3 85 12 94 4.90e-30 112
MS.gene52948.t1 MTR_6g055910 37.931 174 71 4 4 156 15 172 8.80e-30 110
MS.gene52948.t1 MTR_8g098860 59.770 87 35 0 3 89 12 98 9.19e-30 111
MS.gene52948.t1 MTR_3g077110 67.105 76 25 0 3 78 12 87 1.12e-29 112
MS.gene52948.t1 MTR_1g021230 52.874 87 41 0 3 89 57 143 2.54e-29 112
MS.gene52948.t1 MTR_1g017000 56.250 96 40 2 3 96 12 107 2.86e-29 108
MS.gene52948.t1 MTR_7g109320 64.706 85 30 0 1 85 10 94 3.61e-29 110
MS.gene52948.t1 MTR_8g042410 61.842 76 29 0 3 78 37 112 3.67e-29 112
MS.gene52948.t1 MTR_4g105130 64.474 76 27 0 3 78 12 87 5.79e-29 110
MS.gene52948.t1 MTR_1g100667 60.494 81 32 0 4 84 14 94 6.11e-29 108
MS.gene52948.t1 MTR_1g110460 61.842 76 29 0 3 78 26 101 1.95e-28 107
MS.gene52948.t1 MTR_4g485530 63.514 74 27 0 5 78 14 87 2.66e-28 104
MS.gene52948.t1 MTR_7g035075 57.317 82 35 0 3 84 14 95 4.81e-28 104
MS.gene52948.t1 MTR_6g090405 42.446 139 78 2 3 139 12 150 4.88e-28 105
MS.gene52948.t1 MTR_3g052430 52.874 87 41 0 3 89 41 127 7.77e-28 108
MS.gene52948.t1 MTR_3g052450 52.874 87 41 0 3 89 40 126 8.97e-28 108
MS.gene52948.t1 MTR_3g011610 59.211 76 31 0 3 78 37 112 8.99e-28 108
MS.gene52948.t1 MTR_6g006030 54.023 87 40 0 3 89 14 100 9.98e-28 103
MS.gene52948.t1 MTR_4g065017 45.968 124 66 1 3 126 17 139 1.41e-27 106
MS.gene52948.t1 MTR_0197s0010 62.500 72 27 0 7 78 5 76 2.51e-27 103
MS.gene52948.t1 MTR_4g100720 56.962 79 34 0 3 81 13 91 4.41e-27 101
MS.gene52948.t1 MTR_2g097910 55.172 87 39 0 3 89 20 106 5.05e-27 104
MS.gene52948.t1 MTR_1g086510 55.422 83 37 0 2 84 20 102 7.13e-27 102
MS.gene52948.t1 MTR_3g103570 36.416 173 98 3 3 163 12 184 7.56e-27 104
MS.gene52948.t1 MTR_4g097570 54.167 96 42 2 3 96 12 107 9.46e-27 103
MS.gene52948.t1 MTR_6g009430 61.333 75 29 0 3 77 12 86 2.65e-26 102
MS.gene52948.t1 MTR_8g020490 55.263 76 34 0 3 78 8 83 2.83e-26 100
MS.gene52948.t1 MTR_8g017340 63.636 77 27 1 3 78 12 88 3.50e-26 104
MS.gene52948.t1 MTR_2g088170 62.338 77 29 0 2 78 28 104 3.83e-26 103
MS.gene52948.t1 MTR_8g017390 61.039 77 29 1 3 78 12 88 3.92e-26 103
MS.gene52948.t1 MTR_1g073170 50.000 86 43 0 4 89 21 106 4.12e-26 100
MS.gene52948.t1 MTR_4g057635 54.167 96 42 2 3 96 12 107 4.13e-26 102
MS.gene52948.t1 MTR_2g095520 53.125 96 43 2 3 96 12 107 4.13e-26 102
MS.gene52948.t1 MTR_8g017350 63.636 77 27 1 3 78 12 88 4.79e-26 104
MS.gene52948.t1 MTR_5g079120 43.103 116 53 2 2 104 60 175 7.08e-26 101
MS.gene52948.t1 MTR_4g097570 53.608 97 42 3 3 96 12 108 7.68e-26 100
MS.gene52948.t1 MTR_1g086530 50.000 84 42 0 1 84 31 114 9.78e-26 100
MS.gene52948.t1 MTR_3g028740 55.172 87 39 0 3 89 22 108 1.07e-25 101
MS.gene52948.t1 MTR_7g102110 59.211 76 30 1 3 77 12 87 1.27e-25 99.8
MS.gene52948.t1 MTR_1g045610 49.425 87 44 0 4 90 22 108 1.39e-25 99.4
MS.gene52948.t1 MTR_0247s0040 53.247 77 36 0 2 78 6 82 2.67e-25 96.7
MS.gene52948.t1 MTR_5g078800 54.545 77 35 0 2 78 6 82 3.97e-25 98.2
MS.gene52948.t1 MTR_5g079290 47.191 89 47 0 2 90 16 104 4.32e-25 98.2
MS.gene52948.t1 MTR_7g017260 52.500 80 36 1 1 78 23 102 4.48e-25 98.2
MS.gene52948.t1 MTR_1g017140 66.667 69 21 2 3 70 12 79 5.76e-25 99.4
MS.gene52948.t1 MTR_5g014990 52.083 96 44 2 3 96 12 107 6.49e-25 98.6
MS.gene52948.t1 MTR_1g083630 54.545 77 35 0 1 77 10 86 7.18e-25 100
MS.gene52948.t1 MTR_4g128670 53.125 96 43 2 3 96 12 107 9.88e-25 99.0
MS.gene52948.t1 MTR_5g088080 54.054 74 34 0 4 77 13 86 1.03e-24 97.4
MS.gene52948.t1 MTR_5g088150 54.054 74 34 0 4 77 13 86 1.03e-24 97.4
MS.gene52948.t1 MTR_5g488210 54.054 74 34 0 4 77 13 86 1.03e-24 97.4
MS.gene52948.t1 MTR_5g488170 38.793 116 58 1 4 106 13 128 1.17e-24 96.7
MS.gene52948.t1 MTR_5g062790 54.054 74 34 0 4 77 10 83 1.22e-24 97.8
MS.gene52948.t1 MTR_5g088640 38.793 116 58 1 4 106 13 128 1.32e-24 97.1
MS.gene52948.t1 MTR_0193s0090 51.948 77 37 0 2 78 6 82 1.53e-24 95.5
MS.gene52948.t1 MTR_8g060940 50.649 77 38 0 2 78 6 82 1.96e-24 95.9
MS.gene52948.t1 MTR_5g079220 50.649 77 38 0 2 78 20 96 3.07e-24 96.3
MS.gene52948.t1 MTR_5g078950 51.948 77 37 0 2 78 6 82 4.69e-24 95.5
MS.gene52948.t1 MTR_5g078910 52.632 76 36 0 3 78 7 82 5.57e-24 95.9
MS.gene52948.t1 MTR_2g033170 51.111 90 44 0 1 90 22 111 1.39e-23 95.5
MS.gene52948.t1 MTR_5g078860 51.948 77 37 0 2 78 6 82 1.74e-23 94.7
MS.gene52948.t1 MTR_1g062940 38.971 136 79 2 3 137 6 138 4.29e-23 92.0
MS.gene52948.t1 MTR_0001s0360 50.649 77 38 0 2 78 6 82 4.78e-23 92.4
MS.gene52948.t1 MTR_5g078930 52.000 75 36 0 4 78 10 84 1.85e-22 90.1
MS.gene52948.t1 MTR_4g123040 51.111 90 44 0 1 90 22 111 4.29e-22 91.3
MS.gene52948.t1 MTR_0023s0210 48.052 77 40 0 2 78 6 82 4.75e-22 85.5
MS.gene52948.t1 MTR_5g088610 50.000 74 37 0 4 77 10 83 1.01e-20 87.8
MS.gene52948.t1 MTR_8g006470 44.318 88 48 1 3 89 10 97 6.18e-20 85.1
MS.gene52948.t1 MTR_4g063100 46.667 75 40 0 4 78 8 82 1.86e-19 83.2
MS.gene52948.t1 MTR_4g029540 48.052 77 39 1 3 78 10 86 6.30e-19 82.4
MS.gene52948.t1 MTR_1g085880 58.621 58 23 1 3 59 11 68 6.48e-19 80.5
MS.gene52948.t1 MTR_1g085770 58.621 58 23 1 3 59 11 68 2.31e-18 80.9
MS.gene52948.t1 MTR_6g015455 47.126 87 43 2 5 90 5 89 4.79e-18 81.6
MS.gene52948.t1 MTR_2g096380 44.737 76 42 0 3 78 6 81 5.64e-18 79.0
MS.gene52948.t1 MTR_7g111290 71.111 45 13 0 34 78 1 45 1.57e-17 79.0
MS.gene52948.t1 MTR_5g016510 49.333 75 35 2 5 78 5 77 1.75e-17 78.6
MS.gene52948.t1 MTR_4g128190 46.053 76 28 1 2 77 10 72 3.41e-17 76.6
MS.gene52948.t1 MTR_6g055910 34.228 149 61 4 29 156 11 143 3.83e-17 77.0
MS.gene52948.t1 MTR_3g101290 41.860 86 47 2 5 89 37 120 4.40e-16 73.6
MS.gene52948.t1 MTR_4g019370 48.000 75 36 2 5 78 38 110 7.32e-16 74.3
MS.gene52948.t1 MTR_5g049190 48.000 75 36 2 5 78 19 91 8.95e-16 73.2
MS.gene52948.t1 MTR_4g094982 46.154 78 33 2 5 78 5 77 1.19e-15 73.2
MS.gene52948.t1 MTR_3g045430 42.667 75 43 0 3 77 13 87 4.11e-14 69.3
MS.gene52948.t1 MTR_6g074860 49.333 75 35 2 5 78 4 76 7.60e-14 67.8
MS.gene52948.t1 MTR_6g027340 30.159 189 116 5 5 184 16 197 9.33e-14 67.0
MS.gene52948.t1 MTR_4g105660 42.667 75 40 2 5 78 180 252 3.41e-13 67.0
MS.gene52948.t1 MTR_3g110028 39.773 88 50 2 3 89 83 168 6.26e-13 66.6
MS.gene52948.t1 MTR_1g026870 41.558 77 42 2 3 78 83 157 7.03e-13 66.6
MS.gene52948.t1 MTR_7g451170 40.741 81 45 2 5 84 191 269 9.10e-13 65.9
MS.gene52948.t1 MTR_3g463400 44.156 77 40 2 3 78 131 205 9.61e-13 65.9
MS.gene52948.t1 MTR_6g027360 41.111 90 50 2 3 91 76 163 1.26e-12 65.1
MS.gene52948.t1 MTR_7g061330 39.773 88 50 2 3 89 111 196 1.31e-12 65.5
MS.gene52948.t1 MTR_7g461410 39.773 88 50 2 3 89 111 196 1.31e-12 65.5
MS.gene52948.t1 MTR_7g061330 39.773 88 50 2 3 89 75 160 1.34e-12 65.5
MS.gene52948.t1 MTR_5g070020 29.221 154 87 3 3 136 120 271 1.71e-12 65.1
MS.gene52948.t1 MTR_5g041570 46.667 75 37 2 5 78 134 206 1.96e-12 65.1
MS.gene52948.t1 MTR_3g077650 42.667 75 40 2 5 78 181 253 2.10e-12 64.7
MS.gene52948.t1 MTR_4g082040 45.333 75 38 2 5 78 105 177 2.54e-12 64.7
MS.gene52948.t1 MTR_4g063100 57.778 45 19 0 34 78 9 53 2.86e-12 63.2
MS.gene52948.t1 MTR_8g017480 63.415 41 15 0 3 43 12 52 3.42e-12 58.9
MS.gene52948.t1 MTR_1g057980 35.366 82 52 1 3 84 78 158 4.72e-12 63.5
MS.gene52948.t1 MTR_4g088015 40.000 75 42 2 5 78 221 293 9.00e-12 63.2
MS.gene52948.t1 MTR_3g089045 48.000 75 36 2 5 78 16 88 1.77e-11 61.6
MS.gene52948.t1 MTR_5g082910 37.931 87 51 2 5 90 19 103 3.91e-11 60.8
MS.gene52948.t1 MTR_7g037260 37.179 78 48 1 1 78 141 217 4.06e-11 60.8
MS.gene52948.t1 MTR_7g061550 35.632 87 54 1 5 89 7 93 7.11e-11 60.5
MS.gene52948.t1 MTR_6g027370 42.667 75 40 2 5 78 99 171 9.42e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52948.t1 AT1G06180 44.809 183 39 3 1 121 10 192 1.06e-42 143
MS.gene52948.t1 AT3G23250 78.205 78 17 0 1 78 10 87 8.23e-42 142
MS.gene52948.t1 AT2G31180 44.041 193 74 6 1 172 10 189 3.93e-41 139
MS.gene52948.t1 AT5G16770 76.623 77 18 0 2 78 11 87 3.18e-39 136
MS.gene52948.t1 AT5G16770 76.623 77 18 0 2 78 11 87 3.18e-39 136
MS.gene52948.t1 AT5G16770 76.623 77 18 0 2 78 11 87 5.19e-39 136
MS.gene52948.t1 AT5G16770 76.623 77 18 0 2 78 11 87 5.19e-39 136
MS.gene52948.t1 AT1G56160 67.816 87 28 0 3 89 14 100 9.08e-39 134
MS.gene52948.t1 AT3G02940 71.084 83 24 0 2 84 11 93 1.04e-38 134
MS.gene52948.t1 AT3G61250 71.795 78 22 0 1 78 10 87 1.44e-38 134
MS.gene52948.t1 AT3G02940 71.084 83 24 0 2 84 11 93 1.54e-38 134
MS.gene52948.t1 AT3G02940 71.084 83 24 0 2 84 11 93 1.54e-38 134
MS.gene52948.t1 AT1G79180 71.264 87 25 0 3 89 14 100 4.60e-38 132
MS.gene52948.t1 AT4G21440 75.325 77 19 0 2 78 11 87 5.77e-38 134
MS.gene52948.t1 AT5G10280 71.429 77 22 0 2 78 11 87 1.25e-37 132
MS.gene52948.t1 AT1G16490 67.816 87 28 0 3 89 14 100 1.48e-37 130
MS.gene52948.t1 AT1G34670 65.909 88 30 0 2 89 11 98 1.01e-36 130
MS.gene52948.t1 AT3G13540 69.231 78 24 0 1 78 21 98 1.18e-36 127
MS.gene52948.t1 AT5G49330 74.359 78 20 0 1 78 10 87 1.25e-36 130
MS.gene52948.t1 AT3G12820 63.542 96 31 1 3 94 14 109 1.63e-36 127
MS.gene52948.t1 AT5G65230 67.045 88 29 0 2 89 11 98 2.17e-36 129
MS.gene52948.t1 AT5G15310 63.529 85 31 0 1 85 10 94 4.78e-36 126
MS.gene52948.t1 AT3G01140 65.476 84 29 0 2 85 11 94 5.46e-36 128
MS.gene52948.t1 AT3G01140 65.476 84 29 0 2 85 54 137 1.07e-35 128
MS.gene52948.t1 AT4G05100 64.773 88 31 0 2 89 12 99 1.09e-35 127
MS.gene52948.t1 AT4G28110 62.921 89 33 0 2 90 11 99 1.36e-35 125
MS.gene52948.t1 AT5G15310 63.529 85 31 0 1 85 10 94 1.44e-35 126
MS.gene52948.t1 AT5G15310 67.949 78 25 0 1 78 10 87 1.46e-35 127
MS.gene52948.t1 AT2G16720 71.053 76 22 0 3 78 12 87 2.91e-35 124
MS.gene52948.t1 AT4G38620 74.324 74 19 0 5 78 14 87 2.94e-35 125
MS.gene52948.t1 AT4G17785 63.855 83 30 0 2 84 12 94 7.75e-35 125
MS.gene52948.t1 AT4G17785 63.855 83 30 0 2 84 12 94 8.08e-35 125
MS.gene52948.t1 AT1G22640 68.421 76 24 0 3 78 12 87 2.75e-34 122
MS.gene52948.t1 AT5G54230 71.053 76 22 0 3 78 12 87 3.21e-34 123
MS.gene52948.t1 AT4G09460 70.270 74 22 0 5 78 14 87 4.12e-34 120
MS.gene52948.t1 AT5G14340 59.794 97 35 1 1 93 22 118 9.98e-34 120
MS.gene52948.t1 AT2G47460 69.231 78 24 0 1 78 10 87 1.70e-33 122
MS.gene52948.t1 AT1G57560 62.069 87 33 0 3 89 12 98 2.17e-33 120
MS.gene52948.t1 AT3G28910 63.095 84 31 0 2 85 11 94 3.24e-33 120
MS.gene52948.t1 AT1G57560 62.069 87 33 0 3 89 12 98 3.29e-33 120
MS.gene52948.t1 AT5G62470 52.632 114 51 2 1 112 10 122 3.29e-33 121
MS.gene52948.t1 AT1G08810 63.529 85 31 0 1 85 10 94 3.68e-33 119
MS.gene52948.t1 AT1G35515 65.789 76 26 0 3 78 12 87 3.73e-33 117
MS.gene52948.t1 AT5G16600 60.674 89 35 0 1 89 10 98 4.60e-33 120
MS.gene52948.t1 AT5G26660 45.395 152 65 4 3 152 12 147 5.63e-33 120
MS.gene52948.t1 AT1G74650 63.855 83 30 0 3 85 12 94 1.49e-32 119
MS.gene52948.t1 AT3G47600 59.140 93 37 1 1 93 10 101 1.69e-32 119
MS.gene52948.t1 AT1G74080 64.935 77 27 0 2 78 11 87 1.81e-32 119
MS.gene52948.t1 AT4G34990 70.270 74 22 0 5 78 14 87 3.29e-32 117
MS.gene52948.t1 AT4G22680 58.427 89 37 0 1 89 10 98 4.85e-32 116
MS.gene52948.t1 AT3G12720 67.105 76 25 0 3 78 22 97 5.91e-32 117
MS.gene52948.t1 AT1G09540 62.069 87 33 0 3 89 12 98 5.96e-32 118
MS.gene52948.t1 AT3G62610 63.529 85 31 0 1 85 10 94 6.24e-32 117
MS.gene52948.t1 AT1G18570 65.385 78 27 0 1 78 11 88 6.42e-32 118
MS.gene52948.t1 AT5G62470 52.632 114 50 3 1 112 10 121 9.11e-32 117
MS.gene52948.t1 AT5G60890 63.636 77 28 0 2 78 11 87 1.17e-31 116
MS.gene52948.t1 AT1G74430 66.234 77 26 0 2 78 11 87 1.22e-31 115
MS.gene52948.t1 AT4G01680 62.651 83 31 0 3 85 12 94 1.78e-31 114
MS.gene52948.t1 AT1G18710 63.636 77 28 0 2 78 11 87 1.78e-31 115
MS.gene52948.t1 AT1G79180 51.667 120 25 1 3 89 14 133 2.61e-31 115
MS.gene52948.t1 AT2G32460 59.091 88 36 0 2 89 5 92 3.39e-31 117
MS.gene52948.t1 AT2G32460 59.091 88 36 0 2 89 17 104 3.88e-31 117
MS.gene52948.t1 AT5G07690 64.935 77 27 0 2 78 11 87 8.13e-31 114
MS.gene52948.t1 AT4G01680 60.920 87 34 0 3 89 12 98 1.16e-30 114
MS.gene52948.t1 AT1G66230 57.303 89 38 0 1 89 10 98 1.96e-30 112
MS.gene52948.t1 AT5G61420 63.636 77 28 0 2 78 11 87 2.37e-30 114
MS.gene52948.t1 AT3G13890 65.789 76 26 0 3 78 12 87 2.43e-30 114
MS.gene52948.t1 AT5G07700 64.935 77 27 0 2 78 11 87 2.48e-30 113
MS.gene52948.t1 AT5G07700 64.935 77 27 0 2 78 11 87 2.48e-30 113
MS.gene52948.t1 AT4G12350 57.471 87 37 0 3 89 12 98 2.50e-30 112
MS.gene52948.t1 AT5G14750 60.000 75 30 0 4 78 17 91 3.66e-30 109
MS.gene52948.t1 AT5G40330 58.667 75 31 0 4 78 13 87 6.37e-30 109
MS.gene52948.t1 AT1G63910 61.446 83 32 0 3 85 12 94 4.90e-29 110
MS.gene52948.t1 AT5G35550 64.474 76 27 0 3 78 14 89 6.11e-29 108
MS.gene52948.t1 AT5G55020 60.526 76 30 0 3 78 26 101 6.86e-29 112
MS.gene52948.t1 AT5G06100 58.442 77 32 0 2 78 31 107 1.28e-28 110
MS.gene52948.t1 AT5G56110 57.471 87 37 0 3 89 12 98 1.37e-28 108
MS.gene52948.t1 AT5G40350 39.286 168 83 4 3 152 17 183 1.45e-28 106
MS.gene52948.t1 AT3G01530 56.098 82 36 0 3 84 25 106 2.25e-28 105
MS.gene52948.t1 AT5G06100 58.442 77 32 0 2 78 31 107 2.72e-28 110
MS.gene52948.t1 AT5G06100 58.442 77 32 0 2 78 31 107 2.72e-28 110
MS.gene52948.t1 AT5G06100 58.442 77 32 0 2 78 31 107 2.72e-28 110
MS.gene52948.t1 AT5G06100 58.442 77 32 0 2 78 31 107 2.72e-28 110
MS.gene52948.t1 AT4G37780 53.061 98 44 2 1 96 10 107 5.31e-28 106
MS.gene52948.t1 AT3G27810 56.098 82 36 0 3 84 20 101 6.14e-28 104
MS.gene52948.t1 AT2G26960 56.579 76 33 0 3 78 20 95 6.74e-28 108
MS.gene52948.t1 AT1G68320 43.200 125 58 1 3 114 19 143 1.22e-27 105
MS.gene52948.t1 AT3G11440 56.579 76 33 0 3 78 41 116 2.00e-27 107
MS.gene52948.t1 AT3G13890 58.824 85 26 1 3 78 12 96 2.30e-27 106
MS.gene52948.t1 AT3G27920 56.000 75 33 0 4 78 15 89 2.36e-27 103
MS.gene52948.t1 AT4G01680 53.535 99 34 1 3 89 12 110 2.85e-27 105
MS.gene52948.t1 AT4G26930 56.579 76 33 0 3 78 19 94 2.88e-27 106
MS.gene52948.t1 AT3G11440 56.579 76 33 0 3 78 41 116 2.90e-27 107
MS.gene52948.t1 AT3G11440 56.579 76 33 0 3 78 41 116 2.90e-27 107
MS.gene52948.t1 AT3G11440 56.579 76 33 0 3 78 41 116 2.90e-27 107
MS.gene52948.t1 AT3G30210 51.136 88 43 0 2 89 26 113 3.22e-27 103
MS.gene52948.t1 AT1G25340 42.742 124 58 1 4 114 19 142 3.38e-27 104
MS.gene52948.t1 AT3G24310 51.685 89 43 0 2 90 17 105 6.40e-27 103
MS.gene52948.t1 AT5G62320 52.747 91 36 1 1 84 11 101 1.16e-26 102
MS.gene52948.t1 AT5G12870 54.023 87 40 0 3 89 18 104 3.67e-26 101
MS.gene52948.t1 AT4G13480 51.724 87 42 0 4 90 7 93 5.25e-26 100
MS.gene52948.t1 AT3G08500 53.409 88 41 0 3 90 30 117 7.38e-26 101
MS.gene52948.t1 AT3G48920 53.488 86 40 0 4 89 19 104 1.49e-25 99.4
MS.gene52948.t1 AT5G52600 56.579 76 33 0 3 78 12 87 1.54e-25 97.8
MS.gene52948.t1 AT2G36890 54.167 96 42 2 3 96 12 107 2.58e-25 99.4
MS.gene52948.t1 AT3G28470 56.000 75 33 0 3 77 12 86 3.49e-25 99.4
MS.gene52948.t1 AT1G48000 53.659 82 38 0 3 84 32 113 4.04e-25 97.8
MS.gene52948.t1 AT2G36890 54.167 96 42 2 3 96 53 148 4.27e-25 99.8
MS.gene52948.t1 AT2G47190 48.276 87 45 0 3 89 20 106 5.64e-25 98.2
MS.gene52948.t1 AT5G23000 40.252 159 83 5 3 149 12 170 1.20e-24 98.2
MS.gene52948.t1 AT3G49690 53.125 96 43 2 3 96 12 107 1.48e-24 97.8
MS.gene52948.t1 AT5G57620 52.083 96 44 2 3 96 12 107 5.36e-24 96.7
MS.gene52948.t1 AT3G06490 53.933 89 41 0 1 89 17 105 1.04e-23 95.5
MS.gene52948.t1 AT5G65790 51.042 96 45 2 3 96 12 107 1.41e-23 95.9
MS.gene52948.t1 AT5G52260 55.814 86 38 0 4 89 13 98 1.84e-23 94.0
MS.gene52948.t1 AT5G49620 56.250 80 35 0 1 80 24 103 2.83e-23 94.4
MS.gene52948.t1 AT1G66370 50.649 77 38 0 2 78 7 83 4.00e-23 92.8
MS.gene52948.t1 AT5G49620 51.685 89 43 0 1 89 24 112 5.97e-23 93.6
MS.gene52948.t1 AT4G25560 52.326 86 41 0 4 89 11 96 7.57e-23 92.8
MS.gene52948.t1 AT1G25340 40.323 124 56 2 4 114 19 137 8.07e-23 92.4
MS.gene52948.t1 AT1G25340 40.323 124 56 2 4 114 19 137 1.29e-22 92.4
MS.gene52948.t1 AT1G66380 53.247 77 36 0 2 78 7 83 9.83e-22 85.5
MS.gene52948.t1 AT1G66380 53.247 77 36 0 2 78 7 83 4.82e-21 84.7
MS.gene52948.t1 AT1G56650 51.948 77 37 0 2 78 7 83 4.68e-20 84.7
MS.gene52948.t1 AT1G66390 53.247 77 36 0 2 78 7 83 4.71e-20 84.7
MS.gene52948.t1 AT3G53200 50.000 82 41 0 3 84 9 90 8.45e-20 83.6
MS.gene52948.t1 AT3G46130 41.573 89 52 0 2 90 8 96 1.45e-19 83.6
MS.gene52948.t1 AT5G59780 41.860 86 50 0 4 89 9 94 2.56e-19 82.4
MS.gene52948.t1 AT3G60460 39.773 88 52 1 3 89 11 98 1.88e-18 81.3
MS.gene52948.t1 AT2G26950 44.156 77 43 0 8 84 21 97 2.68e-18 81.6
MS.gene52948.t1 AT3G12820 59.016 61 21 1 38 94 1 61 1.55e-17 76.6
MS.gene52948.t1 AT2G23290 50.667 75 34 2 5 78 13 85 3.43e-17 77.8
MS.gene52948.t1 AT5G14750 58.182 55 18 1 29 78 3 57 4.07e-17 75.1
MS.gene52948.t1 AT4G37260 45.349 86 44 2 5 89 13 96 4.12e-17 77.8
MS.gene52948.t1 AT5G26660 41.176 119 52 4 36 152 14 116 8.64e-17 77.0
MS.gene52948.t1 AT5G35550 67.347 49 16 0 30 78 44 92 1.47e-16 75.5
MS.gene52948.t1 AT3G55730 47.436 78 32 2 5 78 56 128 1.96e-15 73.6
MS.gene52948.t1 AT3G50060 46.667 75 37 2 5 78 6 78 2.59e-15 72.4
MS.gene52948.t1 AT3G09230 43.590 78 35 2 5 78 55 127 1.13e-14 71.2
MS.gene52948.t1 AT5G67300 46.667 75 37 2 5 78 6 78 1.54e-14 70.5
MS.gene52948.t1 AT3G47600 58.621 58 23 1 36 93 39 95 2.07e-14 70.1
MS.gene52948.t1 AT1G17950 48.101 79 38 2 1 78 1 77 2.75e-14 68.9
MS.gene52948.t1 AT5G40360 33.696 92 60 1 3 94 156 246 2.89e-14 70.1
MS.gene52948.t1 AT5G40350 36.296 135 67 4 36 152 5 138 3.00e-14 67.4
MS.gene52948.t1 AT3G27810 59.184 49 20 0 36 84 4 52 1.14e-13 66.2
MS.gene52948.t1 AT5G02320 38.636 88 51 2 3 89 125 210 1.57e-13 68.2
MS.gene52948.t1 AT5G02320 38.636 88 51 2 3 89 125 210 1.57e-13 68.2
MS.gene52948.t1 AT5G02320 38.636 88 51 2 3 89 65 150 1.61e-13 68.2
MS.gene52948.t1 AT3G27785 45.333 75 38 2 5 78 189 261 2.83e-13 67.4
MS.gene52948.t1 AT5G11510 42.857 77 41 2 3 78 79 153 3.73e-13 67.4
MS.gene52948.t1 AT5G11510 42.857 77 41 2 3 78 79 153 3.73e-13 67.4
MS.gene52948.t1 AT5G11510 42.857 77 41 2 3 78 79 153 3.73e-13 67.4
MS.gene52948.t1 AT1G69560 44.872 78 40 2 2 78 104 179 4.08e-13 66.6
MS.gene52948.t1 AT2G39880 41.573 89 43 2 5 89 50 133 4.26e-13 66.6
MS.gene52948.t1 AT5G11510 42.857 77 41 2 3 78 79 153 4.34e-13 67.0
MS.gene52948.t1 AT5G11050 37.209 86 51 2 5 89 105 188 4.37e-13 67.0
MS.gene52948.t1 AT1G69560 44.872 78 40 2 2 78 120 195 4.37e-13 66.6
MS.gene52948.t1 AT4G18770 37.500 88 52 2 3 89 215 300 4.56e-13 67.0
MS.gene52948.t1 AT5G58850 38.636 88 51 2 3 89 103 188 4.80e-13 66.6
MS.gene52948.t1 AT5G11510 42.857 77 41 2 3 78 79 153 5.08e-13 67.0
MS.gene52948.t1 AT4G33450 44.156 77 40 2 3 78 17 91 5.97e-13 65.5
MS.gene52948.t1 AT4G32730 41.558 77 42 2 3 78 85 159 1.01e-12 66.2
MS.gene52948.t1 AT4G32730 41.558 77 42 2 3 78 85 159 1.01e-12 66.2
MS.gene52948.t1 AT4G32730 41.558 77 42 2 3 78 85 159 1.01e-12 66.2
MS.gene52948.t1 AT4G32730 41.558 77 42 2 3 78 85 159 1.01e-12 66.2
MS.gene52948.t1 AT4G32730 41.558 77 42 2 3 78 85 159 1.01e-12 65.9
MS.gene52948.t1 AT3G09370 38.636 88 51 2 3 89 133 218 1.08e-12 65.9
MS.gene52948.t1 AT3G09370 38.636 88 51 2 3 89 128 213 1.15e-12 65.9
MS.gene52948.t1 AT3G09370 38.636 88 51 2 3 89 141 226 1.18e-12 65.9
MS.gene52948.t1 AT1G26780 46.753 77 38 2 3 78 96 170 1.27e-12 65.5
MS.gene52948.t1 AT1G26780 46.753 77 38 2 3 78 96 170 1.61e-12 64.7
MS.gene52948.t1 AT1G73410 49.333 75 35 2 5 78 6 78 5.78e-12 62.8
MS.gene52948.t1 AT1G73410 44.828 87 45 2 5 90 6 90 6.21e-12 62.0
MS.gene52948.t1 AT3G29020 41.333 75 41 2 5 78 67 139 1.62e-11 62.0
MS.gene52948.t1 AT3G29020 41.333 75 41 2 5 78 65 137 1.96e-11 61.2
MS.gene52948.t1 AT2G37630 37.931 87 52 1 5 89 4 90 2.32e-11 61.6
MS.gene52948.t1 AT3G53200 55.102 49 22 0 36 84 9 57 3.25e-11 60.1
MS.gene52948.t1 AT3G46130 48.214 56 29 0 35 90 9 64 4.22e-11 60.1
MS.gene52948.t1 AT5G59780 50.000 54 27 0 36 89 20 73 7.99e-11 59.3
MS.gene52948.t1 AT3G46130 49.091 55 28 0 36 90 20 74 8.62e-11 59.3

Find 38 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTATGATATATTTATT+AGG 0.245657 1.1:-56907082 MS.gene52948:CDS
AAATTTCCTCTCTTGATATC+TGG 0.299157 1.1:+56908542 None:intergenic
TTGCAAGTACCTGCTAGCTT+TGG 0.353121 1.1:+56909105 None:intergenic
TGCAAGTACCTGCTAGCTTT+GGG 0.383184 1.1:+56909106 None:intergenic
CTCTCTGGAAGAATTTCATC+AGG 0.402583 1.1:+56907149 None:intergenic
ATTTCATTTGAGATTGTCAA+TGG 0.421450 1.1:+56907188 None:intergenic
TACATGAAATGCTTGGAAAC+AGG 0.426813 1.1:-56908487 MS.gene52948:intron
TATGATATATTTATTAGGAC+TGG 0.454809 1.1:-56907077 MS.gene52948:CDS
TATAATTCTAACTTGGATGA+TGG 0.461037 1.1:-56907113 MS.gene52948:CDS
TTGGTCAGAAGCAGCAGCAT+TGG 0.478820 1.1:-56907243 MS.gene52948:CDS
ATTAAGCTACATGAAATGCT+TGG 0.489832 1.1:-56908494 MS.gene52948:CDS
GTGGGAAAAGCTGCAGACTT+AGG 0.491225 1.1:-56908583 MS.gene52948:CDS
TTCTCAGGCTTGTTAAGGTG+TGG 0.492781 1.1:-56908602 MS.gene52948:intron
TGGGATTGAAGAGGGGTCCT+TGG 0.493355 1.1:-56909197 MS.gene52948:CDS
TGTCACTATTGGTGAAAGAA+AGG 0.495083 1.1:-56907327 MS.gene52948:CDS
TAATCTTCATGAGTACTCTC+TGG 0.500360 1.1:+56907134 None:intergenic
TTCTAACTTGGATGATGGCA+TGG 0.501664 1.1:-56907108 MS.gene52948:CDS
CGTGCCCTCCCAAAGCTAGC+AGG 0.503173 1.1:-56909114 MS.gene52948:intron
TGAAGATTATAATTCTAACT+TGG 0.504622 1.1:-56907120 MS.gene52948:CDS
AAGTGAAGACATTGAGTCCA+TGG 0.505416 1.1:-56907297 MS.gene52948:CDS
TGAAAAGATGGGATTGAAGA+GGG 0.514577 1.1:-56909205 None:intergenic
TCTCAGGCTTGTTAAGGTGT+GGG 0.520871 1.1:-56908601 MS.gene52948:intron
GGAGGGCACGCCAATTGCCA+TGG 0.528545 1.1:+56909127 None:intergenic
GAGGGGTCCTTGGTCTCTTG+AGG 0.562635 1.1:-56909187 MS.gene52948:CDS
GGAAAACCCTCTCAAAACTC+AGG 0.565148 1.1:+56907038 None:intergenic
TACAGCCATTGTCTCCTCCA+TGG 0.567393 1.1:+56907280 None:intergenic
ATTTCATCAGGGTATTGAAG+TGG 0.575754 1.1:+56907161 None:intergenic
GTGAAAAGATGGGATTGAAG+AGG 0.580574 1.1:-56909206 None:intergenic
AAGTACCTGCTAGCTTTGGG+AGG 0.580693 1.1:+56909109 None:intergenic
TGAGTCCATGGAGGAGACAA+TGG 0.582281 1.1:-56907285 MS.gene52948:CDS
AAATTTCACAAATGAAGAAG+AGG 0.588308 1.1:-56908525 MS.gene52948:CDS
GGAAAAGCTGCAGACTTAGG+TGG 0.597620 1.1:-56908580 MS.gene52948:CDS
TCATCTTCCTCAAGAGACCA+AGG 0.622778 1.1:+56909180 None:intergenic
TTGAGACCAGATATCAAGAG+AGG 0.635887 1.1:-56908548 MS.gene52948:CDS
AGTACCTGCTAGCTTTGGGA+GGG 0.642338 1.1:+56909110 None:intergenic
TCTCTGGAAGAATTTCATCA+GGG 0.690572 1.1:+56907150 None:intergenic
GAAAAGATGGGATTGAAGAG+GGG 0.697832 1.1:-56909204 None:intergenic
TGAAGACATTGAGTCCATGG+AGG 0.737546 1.1:-56907294 MS.gene52948:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAATTGATATGATT+TGG - chr1.1:56907589-56907608 MS.gene52948:intron 10.0%
!! ATATTTATTTAAGTAAGAAA+TGG - chr1.1:56907907-56907926 MS.gene52948:intron 10.0%
!! CAATCATATAAATTAAAAAT+TGG + chr1.1:56907830-56907849 None:intergenic 10.0%
!!! TTAATTGAATTATTATTTCT+AGG - chr1.1:56908679-56908698 MS.gene52948:intron 10.0%
!! AAAACTAGTTAAGATTATTA+GGG + chr1.1:56907449-56907468 None:intergenic 15.0%
!! TTTCTTAAAATATAGATAGA+TGG + chr1.1:56907169-56907188 None:intergenic 15.0%
!! TTTGGTATGATATATTTATT+AGG - chr1.1:56909165-56909184 MS.gene52948:CDS 15.0%
!!! AAAATCTTTCAAGTAATATA+TGG - chr1.1:56907213-56907232 MS.gene52948:CDS 15.0%
!!! AAATCTTTCAAGTAATATAT+GGG - chr1.1:56907214-56907233 MS.gene52948:CDS 15.0%
!!! GTTTTTAAAAGTAGAATTAA+AGG + chr1.1:56908092-56908111 None:intergenic 15.0%
!!! TAATTCTACTTTTAAAAACT+AGG - chr1.1:56908093-56908112 MS.gene52948:intron 15.0%
!!! TTTTTTTTATCAATTTTCTC+AGG - chr1.1:56907630-56907649 MS.gene52948:intron 15.0%
!! AAGTGTTAGATATATAAAAG+AGG - chr1.1:56907350-56907369 MS.gene52948:intron 20.0%
!! AATTAGAGAAAAAGAAAAGA+TGG + chr1.1:56907945-56907964 None:intergenic 20.0%
!! ACAATGAAATAAAAAATGTG+TGG - chr1.1:56908739-56908758 MS.gene52948:intron 20.0%
!! ACATAATTTAAATTCTCTCT+GGG - chr1.1:56908595-56908614 MS.gene52948:CDS 20.0%
!! AGTGGTAATATAAAAAGTAA+AGG - chr1.1:56908137-56908156 MS.gene52948:intron 20.0%
!! ATTGATAAACAAGATTAAAG+TGG - chr1.1:56907962-56907981 MS.gene52948:intron 20.0%
!! CAAAACTAGTTAAGATTATT+AGG + chr1.1:56907450-56907469 None:intergenic 20.0%
!! GATGGTACATAATTAATTAT+AGG + chr1.1:56908217-56908236 None:intergenic 20.0%
!! GGAACAAAATTAAAATCAAA+AGG - chr1.1:56908025-56908044 MS.gene52948:intron 20.0%
!! GTTGTGTATACTAAATATAA+TGG - chr1.1:56908047-56908066 MS.gene52948:intron 20.0%
!! TATGATATATTTATTAGGAC+TGG - chr1.1:56909170-56909189 MS.gene52948:CDS 20.0%
!! TCATAATATCTAACATCTTA+AGG - chr1.1:56907377-56907396 MS.gene52948:intron 20.0%
!! TGAAGATTATAATTCTAACT+TGG - chr1.1:56909127-56909146 MS.gene52948:CDS 20.0%
!!! AAAAATCTTTCAAGTAACAT+AGG - chr1.1:56907186-56907205 MS.gene52948:CDS 20.0%
!!! ATTGAATTATTATTTCTAGG+TGG - chr1.1:56908682-56908701 MS.gene52948:intron 20.0%
!!! ATTTAAGTAAGAAATGGATT+TGG - chr1.1:56907913-56907932 MS.gene52948:intron 20.0%
!!! TGTTTTGTATTATTTCATGA+TGG + chr1.1:56908235-56908254 None:intergenic 20.0%
! AAATTTCACAAATGAAGAAG+AGG - chr1.1:56907722-56907741 MS.gene52948:intron 25.0%
! ATAAACAAGATTAAAGTGGT+GGG - chr1.1:56907966-56907985 MS.gene52948:intron 25.0%
! GACATAATTTAAATTCTCTC+TGG - chr1.1:56908594-56908613 MS.gene52948:CDS 25.0%
! GCACTATTGTAAAAAATTGA+TGG + chr1.1:56907260-56907279 None:intergenic 25.0%
! TATAATTCTAACTTGGATGA+TGG - chr1.1:56909134-56909153 MS.gene52948:CDS 25.0%
! TTGACAATTCATAATGCATA+TGG + chr1.1:56908002-56908021 None:intergenic 25.0%
!! ATAAACAGAACATGTTGATT+AGG + chr1.1:56907858-56907877 None:intergenic 25.0%
!! ATCTAACATCTTAAGGTTTT+AGG - chr1.1:56907384-56907403 MS.gene52948:intron 25.0%
!! ATTTCATTTGAGATTGTCAA+TGG + chr1.1:56909062-56909081 None:intergenic 25.0%
!!! AATTATTATTTCTAGGTGGT+CGG - chr1.1:56908686-56908705 MS.gene52948:intron 25.0%
AAACTCGGAAACAAAGAAAA+GGG - chr1.1:56908794-56908813 MS.gene52948:intron 30.0%
AAATTTCCTCTCTTGATATC+TGG + chr1.1:56907708-56907727 None:intergenic 30.0%
ACATCTTACATCCAAAAACA+TGG - chr1.1:56907097-56907116 MS.gene52948:CDS 30.0%
ATGAAGTTCATGGTACTTAA+TGG + chr1.1:56907535-56907554 None:intergenic 30.0%
ATTAAGCTACATGAAATGCT+TGG - chr1.1:56907753-56907772 MS.gene52948:intron 30.0%
GATAAACAAGATTAAAGTGG+TGG - chr1.1:56907965-56907984 MS.gene52948:intron 30.0%
GTTAAGATTATTAGGGAGAT+TGG + chr1.1:56907442-56907461 None:intergenic 30.0%
TAAACAAGATTAAAGTGGTG+GGG - chr1.1:56907967-56907986 MS.gene52948:intron 30.0%
TATGATTAAGTAGTCACTAG+TGG - chr1.1:56908256-56908275 MS.gene52948:intron 30.0%
TGCATTATGAATTGTCAACT+TGG - chr1.1:56908004-56908023 MS.gene52948:intron 30.0%
! AATGGTGCTAACTATAAGAT+GGG + chr1.1:56907517-56907536 None:intergenic 30.0%
! CTGTAATTGATGAGAGTTTT+TGG - chr1.1:56908985-56909004 MS.gene52948:intron 30.0%
! GATTTTTCATCTGTCACTAT+TGG - chr1.1:56908909-56908928 MS.gene52948:intron 30.0%
! TAATGGTGCTAACTATAAGA+TGG + chr1.1:56907518-56907537 None:intergenic 30.0%
! TATTAATTTGATCCTTCACG+AGG - chr1.1:56908541-56908560 MS.gene52948:CDS 30.0%
!! GAATCAGAACGTTTGATTTT+TGG + chr1.1:56908831-56908850 None:intergenic 30.0%
!! GTTTTTGGATGTAAGATGTA+AGG + chr1.1:56907096-56907115 None:intergenic 30.0%
AAACAAGATTAAAGTGGTGG+GGG - chr1.1:56907968-56907987 MS.gene52948:intron 35.0%
AGCAAAATTACCAGGAAGAA+CGG - chr1.1:56908716-56908735 MS.gene52948:intron 35.0%
CAAACTCGGAAACAAAGAAA+AGG - chr1.1:56908793-56908812 MS.gene52948:intron 35.0%
GAAGCTAAACCAAACAAACT+CGG - chr1.1:56908779-56908798 MS.gene52948:intron 35.0%
TAATCTTCATGAGTACTCTC+TGG + chr1.1:56909116-56909135 None:intergenic 35.0%
TACATGAAATGCTTGGAAAC+AGG - chr1.1:56907760-56907779 MS.gene52948:intron 35.0%
TATATTACCACTTGCACCTA+AGG + chr1.1:56908129-56908148 None:intergenic 35.0%
TGTCACTATTGGTGAAAGAA+AGG - chr1.1:56908920-56908939 MS.gene52948:intron 35.0%
TTTGTGAGCTATGAAGTTCA+TGG + chr1.1:56907545-56907564 None:intergenic 35.0%
! ATGGTGCTAACTATAAGATG+GGG + chr1.1:56907516-56907535 None:intergenic 35.0%
! TCTCTGGAAGAATTTCATCA+GGG + chr1.1:56909100-56909119 None:intergenic 35.0%
! TCTTTGTTTCCGAGTTTGTT+TGG + chr1.1:56908791-56908810 None:intergenic 35.0%
!! ATTTCATCAGGGTATTGAAG+TGG + chr1.1:56909089-56909108 None:intergenic 35.0%
!!! CAATTTTCTCAGGCTTGTTA+AGG - chr1.1:56907640-56907659 MS.gene52948:intron 35.0%
AAAAACATGGCCATGGCAAT+TGG - chr1.1:56907110-56907129 MS.gene52948:CDS 40.0%
AAGTGAAGACATTGAGTCCA+TGG - chr1.1:56908950-56908969 MS.gene52948:intron 40.0%
AGCTTCATGTGTCGTCTTAT+GGG + chr1.1:56908189-56908208 None:intergenic 40.0%
ATTTCATTGTCCGTTCTTCC+TGG + chr1.1:56908729-56908748 None:intergenic 40.0%
GCAATTGCAGCAAAATTACC+AGG - chr1.1:56908708-56908727 MS.gene52948:intron 40.0%
GCGAATCTCGTGGAAATATT+TGG - chr1.1:56908504-56908523 MS.gene52948:CDS 40.0%
TACATCCAAAAACATGGCCA+TGG - chr1.1:56907103-56907122 MS.gene52948:CDS 40.0%
TAGATCTGTGATGTGCCTTA+GGG - chr1.1:56908369-56908388 MS.gene52948:intron 40.0%
TAGCTTCATGTGTCGTCTTA+TGG + chr1.1:56908190-56908209 None:intergenic 40.0%
TTAGATCTGTGATGTGCCTT+AGG - chr1.1:56908368-56908387 MS.gene52948:intron 40.0%
TTGAGACCAGATATCAAGAG+AGG - chr1.1:56907699-56907718 MS.gene52948:intron 40.0%
! AACAAGATTAAAGTGGTGGG+GGG - chr1.1:56907969-56907988 MS.gene52948:intron 40.0%
! AATTGCCATGGCCATGTTTT+TGG + chr1.1:56907111-56907130 None:intergenic 40.0%
! ACTTTTCACATTCAGAGTCG+AGG + chr1.1:56907334-56907353 None:intergenic 40.0%
! CTCTCTGGAAGAATTTCATC+AGG + chr1.1:56909101-56909120 None:intergenic 40.0%
! TTCTAACTTGGATGATGGCA+TGG - chr1.1:56909139-56909158 MS.gene52948:CDS 40.0%
!! TGGATGATGGCATGGATTTT+TGG - chr1.1:56909147-56909166 MS.gene52948:CDS 40.0%
!!! CGTCTTATGGGTGCATTTTT+TGG + chr1.1:56908177-56908196 None:intergenic 40.0%
AAAACTGAACGCGAATCTCG+TGG - chr1.1:56908494-56908513 MS.gene52948:CDS 45.0%
ACAAGTGTAACACCTCGTGA+AGG + chr1.1:56908556-56908575 None:intergenic 45.0%
ATTACCACTTGCACCTAAGG+TGG + chr1.1:56908126-56908145 None:intergenic 45.0%
GAGATTGGTGAATCGCTAAG+AGG + chr1.1:56907427-56907446 None:intergenic 45.0%
TCATCTTCCTCAAGAGACCA+AGG + chr1.1:56907070-56907089 None:intergenic 45.0%
TGAAGACATTGAGTCCATGG+AGG - chr1.1:56908953-56908972 MS.gene52948:intron 45.0%
TTACCACTTGCACCTAAGGT+GGG + chr1.1:56908125-56908144 None:intergenic 45.0%
! TTGCAAGTACCTGCTAGCTT+TGG + chr1.1:56907145-56907164 None:intergenic 45.0%
!! TCTCAGGCTTGTTAAGGTGT+GGG - chr1.1:56907646-56907665 MS.gene52948:intron 45.0%
!! TGCAAGTACCTGCTAGCTTT+GGG + chr1.1:56907144-56907163 None:intergenic 45.0%
!! TTCTCAGGCTTGTTAAGGTG+TGG - chr1.1:56907645-56907664 MS.gene52948:intron 45.0%
ACTAGGTACGATCCCACCTT+AGG - chr1.1:56908110-56908129 MS.gene52948:intron 50.0%
ATCTGTGATGTGCCTTAGGG+TGG - chr1.1:56908372-56908391 MS.gene52948:intron 50.0%
GGAAAAGCTGCAGACTTAGG+TGG - chr1.1:56907667-56907686 MS.gene52948:intron 50.0%
GTGGGAAAAGCTGCAGACTT+AGG - chr1.1:56907664-56907683 MS.gene52948:intron 50.0%
TACAGCCATTGTCTCCTCCA+TGG + chr1.1:56908970-56908989 None:intergenic 50.0%
TGAGTCCATGGAGGAGACAA+TGG - chr1.1:56908962-56908981 MS.gene52948:intron 50.0%
TGCCATAAACTGCCACCCTA+AGG + chr1.1:56908387-56908406 None:intergenic 50.0%
TGCCTTAGGGTGGCAGTTTA+TGG - chr1.1:56908382-56908401 MS.gene52948:intron 50.0%
TTGGTCAGAAGCAGCAGCAT+TGG - chr1.1:56909004-56909023 MS.gene52948:intron 50.0%
! ATTAAAGTGGTGGGGGGCTA+GGG - chr1.1:56907975-56907994 MS.gene52948:intron 50.0%
!! AAGTACCTGCTAGCTTTGGG+AGG + chr1.1:56907141-56907160 None:intergenic 50.0%
!! AGTACCTGCTAGCTTTGGGA+GGG + chr1.1:56907140-56907159 None:intergenic 50.0%
GATCCCACCTTAGGTGCAAG+TGG - chr1.1:56908119-56908138 MS.gene52948:intron 55.0%
TGGGATTGAAGAGGGGTCCT+TGG - chr1.1:56907050-56907069 MS.gene52948:CDS 55.0%
! GATTAAAGTGGTGGGGGGCT+AGG - chr1.1:56907974-56907993 MS.gene52948:intron 55.0%
GAGGGGTCCTTGGTCTCTTG+AGG - chr1.1:56907060-56907079 MS.gene52948:CDS 60.0%
CGTGCCCTCCCAAAGCTAGC+AGG - chr1.1:56907133-56907152 MS.gene52948:CDS 65.0%
! GGAGGGCACGCCAATTGCCA+TGG + chr1.1:56907123-56907142 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 56907049 56909220 56907049 ID=MS.gene52948
chr1.1 mRNA 56907049 56909220 56907049 ID=MS.gene52948.t1;Parent=MS.gene52948
chr1.1 exon 56909115 56909220 56909115 ID=MS.gene52948.t1.exon1;Parent=MS.gene52948.t1
chr1.1 CDS 56909115 56909220 56909115 ID=cds.MS.gene52948.t1;Parent=MS.gene52948.t1
chr1.1 exon 56908488 56908617 56908488 ID=MS.gene52948.t1.exon2;Parent=MS.gene52948.t1
chr1.1 CDS 56908488 56908617 56908488 ID=cds.MS.gene52948.t1;Parent=MS.gene52948.t1
chr1.1 exon 56907049 56907367 56907049 ID=MS.gene52948.t1.exon3;Parent=MS.gene52948.t1
chr1.1 CDS 56907049 56907367 56907049 ID=cds.MS.gene52948.t1;Parent=MS.gene52948.t1
Gene Sequence

>MS.gene52948

ATGGGATTGAAGAGGGGTCCTTGGTCTCTTGAGGAAGATGAAATCCTTACATCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCTAGCAGGTACTTGCAATCCATCTATCTATATTTTAAGAAAAATCTTTCAAGTAACATAGGTTAAAAAATCTTTCAAGTAATATATGGGAAATTTCACACATCTATTTTCCATCAATTTTTTACAATAGTGCAATTTTGTATGAGATCTTTTGTATAGTTTAAGTGTGAATGATTTAGTTTCACCTCGACTCTGAATGTGAAAAGTGTTAGATATATAAAAGAGGTGATTCATAATATCTAACATCTTAAGGTTTTAGGCAGAGATTTAGCGTCTTCCTCTTAGCGATTCACCAATCTCCCTAATAATCTTAACTAGTTTTGACTTAACAAACATCAAACTTGTGACATTTCTTTGACAAGACTACCCCATCTTATAGTTAGCACCATTAAGTACCATGAACTTCATAGCTCACAAAATTTCTTGCATTTTTTAACTTTATATAAAAAAATTGATATGATTTGGTAATGTTATGTGTACTAATTTTTTTTATCAATTTTCTCAGGCTTGTTAAGGTGTGGGAAAAGCTGCAGACTTAGGTGGATTAACTATTTGAGACCAGATATCAAGAGAGGAAATTTCACAAATGAAGAAGAGGAAAATATCATTAAGCTACATGAAATGCTTGGAAACAGGTATTAATTCATGTTAATATCTTCTCTACAAAAAGCTTGTCAAGTCCAATTTTTAATTTATATGATTGCTTGTCCTAATCAACATGTTCTGTTTATGATAATATAAATGTTTGATTCATGATTGTATATTTATTTAAGTAAGAAATGGATTTGGATTCATCCATCTTTTCTTTTTCTCTAATTGATAAACAAGATTAAAGTGGTGGGGGGCTAGGGACCATATGCATTATGAATTGTCAACTTGGAACAAAATTAAAATCAAAAGGTTGTGTATACTAAATATAATGGATGTCGTTATAATATAGTGCCTTTAATTCTACTTTTAAAAACTAGGTACGATCCCACCTTAGGTGCAAGTGGTAATATAAAAAGTAAAGGAAAAATTGATGTATCCAAAAAATGCACCCATAAGACGACACATGAAGCTATAAACCTATAATTAATTATGTACCATCATGAAATAATACAAAACAGTATGATTAAGTAGTCACTAGTGGAAATATAGAAAAGTTAATCTATAATAATAACATTAGACAAGTAAATAATTATTATAAAAAAATGTGAGTTGCAACTTCAAGAATCTTGATTAGATCTGTGATGTGCCTTAGGGTGGCAGTTTATGGCACATGCAATATTCATAAGATTCACTCTGTCAGTGTAATCTCTTAAGACAGTATCAAATTTTGTTGTTTTCTGATTCATTGCAATAAACAAAACTGAACGCGAATCTCGTGGAAATATTTGGTATATGACTATATATATTAATTTGATCCTTCACGAGGTGTTACACTTGTACATTTTAATCTCAAATTGACATAATTTAAATTCTCTCTGGGACGATCGTAAAATAATCATTAATGTATTCGAGTTAATAATAATGTTTTTTGAAAAAGTTAATTAATTGAATTATTATTTCTAGGTGGTCGGCAATTGCAGCAAAATTACCAGGAAGAACGGACAATGAAATAAAAAATGTGTGGCACACACATTTGAAGAAGAAGCTAAACCAAACAAACTCGGAAACAAAGAAAAGGGTGATCTCAAAACCAAAAATCAAACGTTCTGATTCAAATTCAAGCACAATAACACAATCAGAATCAGCATCTGCATGCACTACAAGTTCTAGTGATTTTTCATCTGTCACTATTGGTGAAAGAAAGGATATAAAAAGTGAAGACATTGAGTCCATGGAGGAGACAATGGCTGTAATTGATGAGAGTTTTTGGTCAGAAGCAGCAGCATTGGATGAAACTTCAACTGATATGAAATCAAGTTCTCCATTGACAATCTCAAATGAAATGTTGCCACTTCAATACCCTGATGAAATTCTTCCAGAGAGTACTCATGAAGATTATAATTCTAACTTGGATGATGGCATGGATTTTTGGTATGATATATTTATTAGGACTGGAGATCAAATAGAATTGCCTGAGTTTTGA
Protein sequence

>MS.gene52948.t1

MGLKRGPWSLEEDEILTSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEENIIKLHEMLGNSSSDFSSVTIGERKDIKSEDIESMEETMAVIDESFWSEAAALDETSTDMKSSSPLTISNEMLPLQYPDEILPESTHEDYNSNLDDGMDFWYDIFIRTGDQIELPEF