AlfalfaGEDB | MS.gene069687

M. sativa cultivar XinJiangDaYe / MS.gene069687

KEGG: K09422
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069687.t1	XP_003620059.2	98.8	241	2	1	1	240	1	241	3.10E-137	497.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069687.t1	Q6R0C4	55.5	247	89	8	1	232	2	242	6.9e-61	235.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069687.t1	G7KJN3	98.8	241	2	1	1	240	1	241	2.2e-137	497.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene069687.t1	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene069687	MS.gene028080	PPI
MS.gene069687	MS.gene004852	PPI
MS.gene069687	MS.gene07387	PPI
MS.gene069687	MS.gene028078	PPI
MS.gene069687	MS.gene85560	PPI
MS.gene069687	MS.gene72831	PPI
MS.gene069687	MS.gene070084	PPI
MS.gene069687	MS.gene52948	PPI
MS.gene84986	MS.gene069687	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069687.t1	MTR_6g074860	98.755	241	2	1	1	240	1	241	1.09e-180	495
MS.gene069687.t1	MTR_3g089045	60.112	178	64	5	2	177	14	186	1.48e-61	195
MS.gene069687.t1	MTR_5g041570	66.917	133	43	1	2	134	132	263	4.04e-59	193
MS.gene069687.t1	MTR_4g082040	52.874	174	74	2	1	167	102	274	6.54e-59	192
MS.gene069687.t1	MTR_7g086960	73.214	112	30	0	1	112	86	197	1.91e-56	184
MS.gene069687.t1	MTR_6g027370	70.192	104	31	0	4	107	99	202	1.42e-50	168
MS.gene069687.t1	MTR_6g027340	57.143	112	48	0	3	114	15	126	2.51e-44	148
MS.gene069687.t1	MTR_6g027360	55.752	113	50	0	2	114	76	188	5.36e-43	147
MS.gene069687.t1	MTR_4g019370	57.000	100	43	0	4	103	38	137	1.24e-38	137
MS.gene069687.t1	MTR_5g016510	54.000	100	46	0	4	103	5	104	3.62e-35	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069687.t1	AT1G17950	55.144	243	96	6	1	232	2	242	4.19e-80	241
MS.gene069687.t1	AT1G73410	50.000	252	90	5	1	231	3	239	3.57e-70	215
MS.gene069687.t1	AT1G73410	82.727	110	19	0	1	110	3	112	1.03e-61	192
MS.gene069687.t1	AT4G33450	46.186	236	116	5	2	231	17	247	7.35e-61	192
MS.gene069687.t1	AT1G69560	65.468	139	45	2	2	137	105	243	1.01e-58	189
MS.gene069687.t1	AT1G69560	65.942	138	44	2	3	137	122	259	1.53e-58	189
MS.gene069687.t1	AT1G26780	68.254	126	34	1	1	120	95	220	4.68e-57	183
MS.gene069687.t1	AT1G26780	68.254	126	34	1	1	120	95	220	2.31e-56	184
MS.gene069687.t1	AT5G17800	72.897	107	29	0	1	107	90	196	3.62e-55	179
MS.gene069687.t1	AT3G29020	65.789	114	39	0	1	114	62	175	1.92e-53	172

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Find 51 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTGTGATGATCAAG+AGG	0.537064	6.1:+66915599	None:intergenic
AAACAGAAATCCTTTCACGG+AGG	0.765736	6.1:-66915783	MS.gene069687:CDS
AAAGAGCTATGTGAGACACG+AGG	0.711201	6.1:+66915494	None:intergenic
AAAGCTATGGACCTCATAAT+TGG	0.364887	6.1:-66916814	MS.gene069687:CDS
AAAGGATTTCTGTTTATTCT+TGG	0.284404	6.1:+66915791	None:intergenic
AAGAGCTATGTGAGACACGA+GGG	0.644268	6.1:+66915495	None:intergenic
AAGTTTGTTTGATGATCATT+TGG	0.397165	6.1:+66915572	None:intergenic
AATAAACAGAAATCCTTTCA+CGG	0.521436	6.1:-66915786	MS.gene069687:CDS
AATCATAGAACTCAATTGAT+TGG	0.354461	6.1:+66913249	None:intergenic
AATTCATGGTAATAGATGGG+CGG	0.709335	6.1:-66915729	MS.gene069687:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGTGTGATGATCAAG+AGG	+	chr6.1:66914361-66914380	None:intergenic	30.0%
AAAGTGAAAATCACACCTTA+AGG	-	chr6.1:66915467-66915486	MS.gene069687:CDS	30.0%
AAATATGTGCGGTAAAATCA+GGG	+	chr6.1:66916539-66916558	None:intergenic	30.0%
AACAGTATAGCAAAATGGTT+TGG	+	chr6.1:66916432-66916451	None:intergenic	30.0%
ACAGTATAGCAAAATGGTTT+GGG	+	chr6.1:66916431-66916450	None:intergenic	30.0%
AGGATCTAGACATTTGATAT+TGG	+	chr6.1:66916515-66916534	None:intergenic	30.0%
AGGTATAAGATCTATGCAAA+AGG	-	chr6.1:66914334-66914353	MS.gene069687:intron	30.0%
AGTTGTTAATTAAGTAGGGA+GGG	+	chr6.1:66914832-66914851	None:intergenic	30.0%
ATAAAAGACACCTTCACAAA+AGG	+	chr6.1:66915370-66915389	None:intergenic	30.0%
ATAACTTCTCATCGAATTCA+TGG	-	chr6.1:66914214-66914233	MS.gene069687:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	66913085	66916894	66913085	ID=MS.gene069687
chr6.1	mRNA	66913085	66916894	66913085	ID=MS.gene069687.t1;Parent=MS.gene069687
chr6.1	exon	66916780	66916894	66916780	ID=MS.gene069687.t1.exon1;Parent=MS.gene069687.t1
chr6.1	CDS	66916780	66916894	66916780	ID=cds.MS.gene069687.t1;Parent=MS.gene069687.t1
chr6.1	exon	66915438	66915851	66915438	ID=MS.gene069687.t1.exon2;Parent=MS.gene069687.t1
chr6.1	CDS	66915438	66915851	66915438	ID=cds.MS.gene069687.t1;Parent=MS.gene069687.t1
chr6.1	exon	66913085	66913278	66913085	ID=MS.gene069687.t1.exon3;Parent=MS.gene069687.t1
chr6.1	CDS	66913085	66913278	66913085	ID=cds.MS.gene069687.t1;Parent=MS.gene069687.t1

Gene Sequence

>MS.gene069687

ATGTGTAGTAGAGGCCATTGGAGACCATCTGAGGATGAGAAGCTTAGGGAGTTGGTGGAAAGCTATGGACCTCATAATTGGAACGCCATAGCTGAAAATCTCCGAGGAAGATCAGGTAAAATTAATGATCAAATACTCAATTATTCTGATTATTCACTCAACTAAAAATAACAAATTCAAGTAAAAATATTTCAACAACCATCGAGTATGTATACAAGAAAATGATAGCATACTTAACTCTTAGGTAGAGATTTGTAATAGTTTTGTAAAATATAAATACGTTTTATTGGATACATATAATAGCTTCATATTAGAAAATTTTTGTTGGAATTACCACACAGCTAGATCATAATTTGAGGAAATTAGGAACTAGTTGTGTAGTATAAGTTTTTTATTCAGAAAAATATTTGTGTAAAGTAGCCATATTTTAGCTGGGTATTGGTATATAATCACTAATTAATTGATTAAATTCGGTCAAAAATTAAGTGATTAAATATTTTTCTAGGGTTTGACTAAAAGATCAAGAAATTTAAATTTTTACTGTATATACAAATGTAAAAAAAAATTGTAGGGAGCATAACAAGTGCAAGTAAAATGCTTTATTTTTTTTCCACATGCTTTTGGTTGCACTTACCCCTCCACTCATGCACACAATTTGAGTTTATCCCTTCTATATTTTTTAACACATCAAGTAAATGATTTATTGAGACGGAACTATAATTGGGTATTCATAGAGAGAATCCAGCATAGTGAAAGAGATTTTCTTGTGTGTATATAAGGGTTTTGGTGTAAAAAATAAATAGATATAAGAAACATCATTTAATCCAACATTATAAGGTTGTCTTTTTATTTTTTTTTAAACAACAAAATTAGTATGAATTTCATGTCTAGGATGGGAGCAAACTCCTGACCTTCTTATCACTACAGTCTTTAACTCCTCCATCCCCACCACCAAATTATCATTCTCATATTCCTTGATTTTATAAGTTTAATTTGTAAATATTAATTATAACATAAGCTCATTTTGTCTTGAATTTTATTAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAATTGGATCCAAGAATAAACAGAAATCCTTTCACGGAGGAAGAAGAAGAGCGTCTTATAACTTCTCATCGAATTCATGGTAATAGATGGGCGGTCATTGCAAGACACTTCCCCGGACGGACTGATAATGCTGTAAAGAATCATTGGCATGTGATGATGGCGAGGATTCGTCGAGAAAGGTATAAGATCTATGCAAAAGGTCCTCTTGATCATCACACAATTTTCTCTCCAAATGATCATCAAACAAACTTTGAGAGAACAAATCTCCACTCTTTTGTTGAGAAGTATCATGAAAAGCATAATCACCCTCGTGTCTCACATAGCTCTTTCCAATTTCCCAAGTTTCACTTTCATGGTCCAAATTCTTGTTCCACAATGCTTCAAGGTACATCTATTTTCATGCTCCCTATAGATGACTTCAATATAAAATAATGATTATAGAATTACCATCATGGTTTGAAATTGTGATACATCATGGTTTGAAATTGTGATACAAATCCAAAATTAATACTATAACATCAAGGCTTTAAAAGATTTTGTTGTAATCAAAATTATATTAAATTAAATTAAAGAAAGTTCAATAGGTTTTCTAACTCATTAAATCAATTACATGGACCAAAGTTATTCACAGGGTCAGCAAAACAATCTAAAAAAAGTAGTCGAATATCTGTTCCCTCCCTACTTAATTAACAACTAGCCCTAAGATTATTAGTAAAAAAAAAAATCTAGCCCTAAGACTAAAAACAATTAACTTAAGCAATCACATCACATTATTACAATCTACCTCATACCCTCTTAAAAAATTATTCTATTTCATAACAACCACGACCAAGCTAGCTACAACAAGCCAAAACTTATCTAACTTTCTAACTCAGTCTCCTTTTAACTAAAGTAAAACCTGCATGTTGCGAAAAATGATCAAACTCCACTACTATGATACATTTCATCAAATCCCAACCAACTCTAAACTATTCACCACACATTTATTAGAGAATGAACGTGGGAAGAAGAAATTATTGCAACTTTCATTTTGACTAAAACAAATACGGAGGAAGCATCAAAGTTAGAGTTAGAAGACAATAAGCAGATGTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGGGTTATGATAGAAGACACCTTTTGTGAAGGTGTCTTTTATCAAGTTACTCTATGAGCATTTGCGAAAAGACACCAACTTACTTTTAGGAAGGTGTCTTTTAGCAAAGTTATAACTAAAAAGTGAAAATCACACCTTAAGGTGTGACTTAATAAAAGACACCACCAAAGGGTGGCATGTAACATAACCCTATATATATATATATATATATATATATATATATATATATATATATCACAAAAACCGAGTTGTACTTTTTTGAACCGATTATATTCTCTGAAAAATGAACTACACCCTCCGTTAAGCAAAAATTAGTCAACATAAGTTGATGTATCTGCTATAAATTTTGAACCAAATACATTAATTTTTGTTGATCAATTTTTACTTACATTTTAGGACGGAAGGACTGAGGGAGTATAATATTAACCAATTATTTGTACCGTTAAAAAACCAAAATAAAATATTATGGTTGTTTAAAAAAACAAAAATTTAAAATGAATCAAGCCACACCGAAAAGAAAGGAAAAAGCTTCTTAGTGCGACATGTATACGCACGAAAAACAACGGATGATATTTAACCGTAGGATATATCTCAAATTGCAATTTCTTATGACTTTCATTTATTTTAAAAATTTAATCAACTGCCAGCATGTATCGTGTGCCATTCTTGCGTCAATTCCTTCGCACTCTATAGCATTCCTCGAAAAGAAATGAACTGTGACGGACAATTCACAAACAGAACTTAAGCAAATCGAACTAAAAAGTTCATGAATTGTCGGTCACGGTTTAATTTCTTTTTTTTGGTTCTGTCTTTGGTTTTTCTAAACAGCCCTAAGTGGTGGCTAACCTCTCATGAATGAGTATCCAAGCTAACACAAAGACTTCGGATTGTACCCATGGGTGGATCCACTGTTAGGCATGGTGTGGCAGTTGCCACACCAGATTATTTCCCTTTTTTTTTCTTCATATACTTGACTTAAATAATTATATATATAATATAAGTCGCTAACATATCATAGGTTTCTCTCTTGGCCTAGCGGTTTATGCTTGATGGATGATTCATATGACTTGTGTTCTCTCACCCAAACCATTTTGCTATACTGTTTAAAGTGTCAAAGGTCTACTTTATTAATATATATATAGTTGTTTTGAAAGTTTTGCCACACCAATATCAAATGTCTAGATCCTCCCCTGATTTTACCGCACATATTTAGAGGTTATATTGATTTGAATCAAAATACTAATTAGTTCCAACTCATACCTACTTAGTGTCTCTCTCTCTCTATATATATATACCAATTTTCTAATGGTCATTGATAATGATAATGTTAATTGTGTTTGTTTGATATTGTAGATAAAAGCCAATCAATTGAGTTCTATGATTTTCTTCAAGTAGATTCCAATAAAAGTGAAGTAACTGATAATGCTAGAAGAGATGATGAGGAAGTCAATCAAGATGTTATGGAACTGAAGAACAAGGAAAACAATGTTCAATTCATTGATTTTTTGTCTACCGGAAGTTGCCAACATAGCTGCAAAATTAAGTGA

Protein sequence

>MS.gene069687.t1

MCSRGHWRPSEDEKLRELVESYGPHNWNAIAENLRGRSGKSCRLRWFNQLDPRINRNPFTEEEEERLITSHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERYKIYAKGPLDHHTIFSPNDHQTNFERTNLHSFVEKYHEKHNHPRVSHSSFQFPKFHFHGPNSCSTMLQDKSQSIEFYDFLQVDSNKSEVTDNARRDDEEVNQDVMELKNKENNVQFIDFLSTGSCQHSCKIK