AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53025

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53025.t1 MTR_1g074370 96.714 213 4 1 1 210 1 213 3.64e-150 416
MS.gene53025.t1 MTR_1g043350 62.136 206 66 3 8 202 6 210 1.19e-67 207
MS.gene53025.t1 MTR_1g070015 47.917 192 79 4 15 203 42 215 3.19e-52 167
MS.gene53025.t1 MTR_1g070000 48.731 197 73 5 15 204 42 217 4.30e-52 167
MS.gene53025.t1 MTR_1g069985 54.487 156 65 3 52 203 54 207 2.35e-50 162
MS.gene53025.t1 MTR_4g054740 52.071 169 65 5 47 199 67 235 3.49e-50 163
MS.gene53025.t1 MTR_1g070020 58.865 141 46 3 66 199 63 198 2.27e-48 157
MS.gene53025.t1 MTR_4g054860 57.042 142 45 4 74 199 132 273 3.93e-47 156
MS.gene53025.t1 MTR_1g069940 61.074 149 47 4 70 207 92 240 5.71e-47 155
MS.gene53025.t1 MTR_1g069945 58.025 162 54 4 52 199 76 237 8.81e-47 154
MS.gene53025.t1 MTR_4g054360 57.343 143 47 4 71 199 122 264 2.11e-46 154
MS.gene53025.t1 MTR_7g096830 54.438 169 61 4 47 199 68 236 2.99e-46 153
MS.gene53025.t1 MTR_1g070035 44.500 200 79 6 28 203 21 212 4.85e-44 147
MS.gene53025.t1 MTR_7g096780 60.714 140 50 2 68 202 80 219 2.63e-43 145
MS.gene53025.t1 MTR_1g070045 55.319 141 54 5 29 167 25 158 2.20e-42 141
MS.gene53025.t1 MTR_4g088005 58.654 104 42 1 28 130 11 114 5.18e-42 138
MS.gene53025.t1 MTR_2g015040 57.895 114 41 2 28 134 11 124 6.92e-42 139
MS.gene53025.t1 MTR_2g015050 45.294 170 70 3 50 201 111 275 1.42e-35 126
MS.gene53025.t1 MTR_4g100380 45.578 147 42 3 25 133 59 205 1.21e-33 121
MS.gene53025.t1 MTR_8g006840 46.212 132 45 3 28 133 54 185 5.09e-31 112
MS.gene53025.t1 MTR_1g070070 69.620 79 21 1 57 132 2 80 7.87e-30 108
MS.gene53025.t1 MTR_7g096750 75.362 69 17 0 64 132 11 79 1.38e-29 107
MS.gene53025.t1 MTR_1g048610 60.465 86 32 1 55 138 69 154 2.28e-29 109
MS.gene53025.t1 MTR_7g081795 50.000 124 44 4 16 130 3 117 3.88e-29 108
MS.gene53025.t1 MTR_8g006815 53.571 112 49 1 61 169 84 195 4.45e-29 107
MS.gene53025.t1 MTR_7g096700 67.901 81 19 2 52 132 6 79 6.94e-29 105
MS.gene53025.t1 MTR_1g090290 57.895 95 38 1 51 143 89 183 5.05e-28 105
MS.gene53025.t1 MTR_1g074230 78.333 60 13 0 73 132 19 78 1.15e-27 102
MS.gene53025.t1 MTR_1g074310 62.500 72 27 0 61 132 9 80 1.54e-27 102
MS.gene53025.t1 MTR_7g081815 63.855 83 25 2 48 130 41 118 1.65e-27 103
MS.gene53025.t1 MTR_4g100450 64.000 75 27 0 59 133 140 214 2.20e-27 105
MS.gene53025.t1 MTR_4g100420 52.688 93 44 0 59 151 143 235 2.89e-27 105
MS.gene53025.t1 MTR_7g081805 60.714 84 29 1 47 130 39 118 4.22e-27 102
MS.gene53025.t1 MTR_8g006825 52.632 95 40 2 43 133 63 156 3.82e-26 100
MS.gene53025.t1 MTR_7g021010 52.174 92 40 2 47 135 22 112 5.77e-26 99.0
MS.gene53025.t1 MTR_7g020980 52.174 92 40 2 47 135 22 112 6.08e-26 99.0
MS.gene53025.t1 MTR_7g021010 61.972 71 26 1 65 135 4 73 1.26e-25 97.1
MS.gene53025.t1 MTR_1g074250 64.000 75 19 2 64 130 3 77 9.45e-25 94.7
MS.gene53025.t1 MTR_7g096810 63.158 76 28 0 64 139 4 79 2.31e-23 90.9
MS.gene53025.t1 MTR_2g438180 65.625 64 22 0 69 132 10 73 5.40e-23 90.1
MS.gene53025.t1 MTR_1g069960 76.667 60 14 0 73 132 27 86 9.63e-23 90.1
MS.gene53025.t1 MTR_2g078680 52.326 86 40 1 48 133 6 90 1.52e-22 90.9
MS.gene53025.t1 MTR_1g040430 59.551 89 36 0 44 132 82 170 4.04e-22 89.7
MS.gene53025.t1 MTR_4g086160 46.903 113 37 4 73 174 96 196 6.71e-22 89.7
MS.gene53025.t1 MTR_2g014300 54.762 84 36 2 61 143 3 85 2.93e-21 86.7
MS.gene53025.t1 MTR_3g053690 64.062 64 22 1 69 132 23 85 3.77e-21 87.8
MS.gene53025.t1 MTR_8g092460 58.571 70 28 1 64 133 136 204 4.60e-21 89.4
MS.gene53025.t1 MTR_5g085070 65.079 63 21 1 69 131 47 108 4.74e-21 88.6
MS.gene53025.t1 MTR_4g086165 64.286 70 22 2 69 138 78 144 4.86e-21 87.0
MS.gene53025.t1 MTR_4g086190 65.217 69 21 2 73 141 96 161 6.29e-21 87.4
MS.gene53025.t1 MTR_5g009620 66.102 59 19 1 71 129 110 167 6.31e-21 88.6
MS.gene53025.t1 MTR_5g085100 65.079 63 21 1 69 131 42 103 9.25e-21 87.8
MS.gene53025.t1 MTR_2g105380 54.545 77 34 1 56 132 100 175 4.47e-20 87.0
MS.gene53025.t1 MTR_1g087920 65.000 60 20 1 73 132 77 135 6.08e-20 85.9
MS.gene53025.t1 MTR_2g014340 61.538 65 24 1 69 133 15 78 8.02e-20 83.6
MS.gene53025.t1 MTR_8g022820 59.722 72 27 2 62 132 112 182 8.16e-20 86.7
MS.gene53025.t1 MTR_8g022820 59.722 72 27 2 62 132 112 182 8.16e-20 86.7
MS.gene53025.t1 MTR_8g022820 59.722 72 27 2 62 132 111 181 8.18e-20 86.7
MS.gene53025.t1 MTR_2g435590 67.241 58 18 1 73 130 96 152 1.12e-19 84.7
MS.gene53025.t1 MTR_1g090170 48.889 90 41 2 45 130 120 208 1.18e-19 85.5
MS.gene53025.t1 MTR_1g090170 48.889 90 41 2 45 130 207 295 1.43e-19 85.9
MS.gene53025.t1 MTR_5g062700 62.500 64 23 1 67 130 167 229 1.48e-19 85.9
MS.gene53025.t1 MTR_4g086220 67.797 59 18 1 73 131 96 153 1.66e-19 83.6
MS.gene53025.t1 MTR_8g069360 70.175 57 16 1 73 129 44 99 2.13e-19 85.9
MS.gene53025.t1 MTR_3g090760 54.412 68 30 1 71 138 111 177 2.95e-19 84.7
MS.gene53025.t1 MTR_1g028560 61.667 60 22 1 70 129 112 170 5.02e-19 84.0
MS.gene53025.t1 MTR_2g090235 66.667 60 19 1 71 130 216 274 5.72e-19 84.3
MS.gene53025.t1 MTR_5g075570 53.731 67 30 1 68 134 119 184 7.19e-19 82.8
MS.gene53025.t1 MTR_3g074130 65.000 60 20 1 71 130 148 206 7.79e-19 83.6
MS.gene53025.t1 MTR_4g119270 45.000 100 48 3 30 129 16 108 9.81e-19 83.2
MS.gene53025.t1 MTR_4g078710 48.864 88 41 2 43 130 1 84 1.08e-18 81.3
MS.gene53025.t1 MTR_0939s0010 57.500 80 28 3 73 147 65 143 1.32e-18 80.5
MS.gene53025.t1 MTR_2g089170 59.722 72 24 3 73 140 65 135 2.58e-18 79.3
MS.gene53025.t1 MTR_8g090350 52.703 74 34 1 68 141 108 180 4.77e-18 80.5
MS.gene53025.t1 MTR_7g084370 70.690 58 14 2 73 129 42 97 6.67e-18 80.1
MS.gene53025.t1 MTR_8g099215 59.322 59 23 1 71 129 105 162 7.46e-18 80.5
MS.gene53025.t1 MTR_5g083340 63.934 61 21 1 70 130 82 141 7.59e-18 81.3
MS.gene53025.t1 MTR_2g019750 50.633 79 35 2 51 129 31 105 7.90e-18 80.1
MS.gene53025.t1 MTR_8g006410 46.914 81 41 2 56 136 35 113 1.95e-17 77.4
MS.gene53025.t1 MTR_7g046260 46.512 86 41 2 45 130 37 117 2.21e-17 77.8
MS.gene53025.t1 MTR_3g110205 56.452 62 26 1 69 130 39 99 3.04e-17 76.6
MS.gene53025.t1 MTR_3g102100 47.059 85 41 3 63 147 35 115 3.14e-17 76.3
MS.gene53025.t1 MTR_5g032820 66.667 57 18 1 73 129 46 101 3.17e-17 79.3
MS.gene53025.t1 MTR_6g088405 60.345 58 22 1 73 130 44 100 3.26e-17 77.0
MS.gene53025.t1 MTR_4g111915 47.561 82 39 2 49 130 32 109 3.27e-17 75.1
MS.gene53025.t1 MTR_8g013860 53.226 62 28 1 69 130 43 103 6.14e-17 76.3
MS.gene53025.t1 MTR_5g008540 47.368 76 37 2 67 140 18 92 1.27e-16 72.4
MS.gene53025.t1 MTR_2g101340 56.897 58 24 1 73 130 41 97 1.67e-16 75.1
MS.gene53025.t1 MTR_4g112490 47.561 82 39 2 49 130 32 109 1.78e-16 74.7
MS.gene53025.t1 MTR_8g102800 58.621 58 23 1 73 130 37 93 2.52e-16 75.1
MS.gene53025.t1 MTR_2g043050 50.667 75 32 2 60 130 2 75 4.66e-16 73.9
MS.gene53025.t1 MTR_4g100650 51.515 66 31 1 65 130 66 130 7.46e-16 74.3
MS.gene53025.t1 MTR_4g035430 54.098 61 27 1 73 133 32 91 8.54e-16 73.6
MS.gene53025.t1 MTR_1g019110 48.571 70 35 1 71 140 42 110 8.63e-16 72.4
MS.gene53025.t1 MTR_4g114570 55.738 61 26 1 71 131 5 64 9.78e-16 73.2
MS.gene53025.t1 MTR_4g010640 55.556 63 27 1 69 131 3 64 1.50e-15 72.4
MS.gene53025.t1 MTR_7g085810 43.678 87 39 2 73 150 30 115 1.79e-15 73.2
MS.gene53025.t1 MTR_5g012910 53.226 62 28 1 69 130 24 84 1.82e-15 71.6
MS.gene53025.t1 MTR_7g011630 51.899 79 34 3 54 129 20 97 1.83e-15 74.7
MS.gene53025.t1 MTR_2g103700 52.381 63 29 1 71 133 5 66 2.89e-15 70.9
MS.gene53025.t1 MTR_7g117690 50.820 61 29 1 73 133 28 87 4.93e-15 70.5
MS.gene53025.t1 MTR_7g092190 55.172 58 25 1 73 130 30 86 6.80e-15 72.0
MS.gene53025.t1 MTR_6g029180 50.769 65 31 1 73 137 33 96 7.12e-15 72.0
MS.gene53025.t1 MTR_5g016750 52.459 61 28 1 70 130 22 81 7.21e-15 70.1
MS.gene53025.t1 MTR_8g027465 47.761 67 34 1 69 135 35 100 7.27e-15 70.1
MS.gene53025.t1 MTR_5g083330 56.452 62 26 1 69 130 31 91 9.74e-15 71.6
MS.gene53025.t1 MTR_3g106290 52.381 63 29 1 68 130 3 64 1.13e-14 69.7
MS.gene53025.t1 MTR_2g043030 55.172 58 25 1 73 130 19 75 1.32e-14 69.7
MS.gene53025.t1 MTR_1g014860 43.902 82 39 2 49 130 4 78 1.55e-14 70.1
MS.gene53025.t1 MTR_2g016730 48.611 72 36 1 60 131 10 80 2.14e-14 70.9
MS.gene53025.t1 MTR_6g012970 53.226 62 28 1 68 129 33 93 2.59e-14 71.2
MS.gene53025.t1 MTR_5g008470 53.571 56 25 1 75 130 77 131 2.70e-14 68.6
MS.gene53025.t1 MTR_8g085960 54.386 57 25 1 73 129 25 80 3.12e-14 69.3
MS.gene53025.t1 MTR_4g008860 52.381 63 29 1 68 130 3 64 4.02e-14 68.6
MS.gene53025.t1 MTR_1g014800 41.026 78 44 2 53 130 12 87 5.49e-14 68.6
MS.gene53025.t1 MTR_1g014820 44.595 74 36 3 60 130 12 83 6.43e-14 68.9
MS.gene53025.t1 MTR_3g105510 50.000 66 30 2 65 129 29 92 6.83e-14 68.6
MS.gene53025.t1 MTR_1g074280 61.667 60 23 0 73 132 17 76 7.30e-14 65.9
MS.gene53025.t1 MTR_5g085125 55.556 63 27 1 69 131 12 73 8.08e-14 67.0
MS.gene53025.t1 MTR_7g070220 56.250 64 20 2 73 129 78 140 9.21e-14 69.7
MS.gene53025.t1 MTR_1g014780 42.683 82 40 2 49 130 20 94 1.02e-13 67.8
MS.gene53025.t1 MTR_5g082950 59.649 57 22 1 73 129 66 121 1.18e-13 68.9
MS.gene53025.t1 MTR_3g098580 61.538 65 24 1 69 133 72 135 1.27e-13 68.2
MS.gene53025.t1 MTR_4g082345 51.613 62 29 1 68 129 43 103 1.48e-13 68.6
MS.gene53025.t1 MTR_2g043040 53.448 58 26 1 73 130 19 75 1.53e-13 67.4
MS.gene53025.t1 MTR_8g032610 42.105 76 43 1 71 146 25 99 1.67e-13 68.2
MS.gene53025.t1 MTR_6g088425 59.677 62 24 1 69 130 45 105 1.79e-13 67.4
MS.gene53025.t1 MTR_1g074290 63.333 60 22 0 73 132 17 76 2.24e-13 65.5
MS.gene53025.t1 MTR_3g095190 48.039 102 41 3 40 130 126 226 3.96e-13 67.4
MS.gene53025.t1 MTR_6g033255 66.154 65 21 1 69 133 16 79 7.28e-13 65.1
MS.gene53025.t1 MTR_1g097190 52.727 55 25 1 68 122 18 71 8.72e-13 63.5
MS.gene53025.t1 MTR_8g023680 69.048 42 12 1 73 114 116 156 9.29e-13 66.6
MS.gene53025.t1 MTR_2g043020 51.724 58 27 1 73 130 19 75 9.89e-13 64.7
MS.gene53025.t1 MTR_1g101600 52.632 57 26 1 73 129 41 96 1.49e-12 64.3
MS.gene53025.t1 MTR_1g006660 55.714 70 28 2 69 138 43 109 2.10e-12 64.7
MS.gene53025.t1 MTR_6g466130 42.529 87 48 2 43 129 37 121 2.35e-12 64.3
MS.gene53025.t1 MTR_4g102670 46.032 63 32 2 68 130 10 70 3.16e-12 62.8
MS.gene53025.t1 MTR_1g074270 65.909 44 14 1 88 130 22 65 8.79e-12 60.1
MS.gene53025.t1 MTR_2g085015 44.068 59 32 1 73 130 47 105 1.69e-11 61.6
MS.gene53025.t1 MTR_6g465510 47.619 63 32 1 73 135 33 94 2.03e-11 61.2
MS.gene53025.t1 MTR_6g465430 50.000 62 28 2 69 129 50 109 3.29e-11 61.2
MS.gene53025.t1 MTR_1g105400 33.010 103 57 2 60 162 102 192 3.47e-11 62.0
MS.gene53025.t1 MTR_5g008790 46.774 62 30 2 71 130 16 76 3.61e-11 59.7
MS.gene53025.t1 MTR_4g134870 73.684 38 10 0 89 126 331 368 5.61e-11 61.2
MS.gene53025.t1 MTR_6g466000 40.230 87 50 2 43 129 28 112 5.81e-11 60.1
MS.gene53025.t1 MTR_6g465690 41.176 85 48 2 45 129 36 118 6.47e-11 60.5
MS.gene53025.t1 MTR_6g465530 50.877 57 27 1 73 129 33 88 6.94e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53025.t1 AT3G23240 63.889 180 59 3 28 203 36 213 7.09e-73 220
MS.gene53025.t1 AT2G31230 53.005 183 53 3 52 202 61 242 3.49e-52 168
MS.gene53025.t1 AT1G06160 50.000 182 57 3 53 201 62 242 2.17e-38 133
MS.gene53025.t1 AT5G47220 50.000 130 41 3 28 133 48 177 2.41e-35 125
MS.gene53025.t1 AT4G17500 47.826 138 40 2 28 133 71 208 1.15e-34 124
MS.gene53025.t1 AT2G44840 48.739 119 48 2 28 133 34 152 4.12e-30 111
MS.gene53025.t1 AT5G43410 80.000 60 12 0 73 132 15 74 6.21e-30 108
MS.gene53025.t1 AT3G23230 71.875 64 18 0 69 132 16 79 5.90e-28 103
MS.gene53025.t1 AT5G47230 46.923 130 58 3 15 133 87 216 6.05e-28 107
MS.gene53025.t1 AT5G51190 69.841 63 19 0 70 132 69 131 8.74e-28 105
MS.gene53025.t1 AT4G18450 62.338 77 27 2 69 144 106 181 9.28e-27 104
MS.gene53025.t1 AT4G17490 69.231 65 20 0 69 133 133 197 1.26e-26 103
MS.gene53025.t1 AT5G61600 65.079 63 22 0 71 133 86 148 6.73e-26 100
MS.gene53025.t1 AT3G16770 58.824 85 29 3 51 130 52 135 1.04e-24 97.8
MS.gene53025.t1 AT5G07580 59.494 79 29 1 54 132 94 169 1.19e-24 96.7
MS.gene53025.t1 AT2G33710 66.154 65 21 1 69 133 66 129 2.30e-24 96.3
MS.gene53025.t1 AT2G33710 66.154 65 21 1 69 133 66 129 2.57e-24 96.3
MS.gene53025.t1 AT5G13330 53.846 78 34 2 56 133 23 98 2.74e-23 93.2
MS.gene53025.t1 AT3G23220 74.603 63 16 0 70 132 11 73 5.13e-23 90.5
MS.gene53025.t1 AT1G04370 73.438 64 17 0 69 132 16 79 9.55e-23 89.7
MS.gene53025.t1 AT5G61890 61.538 65 24 1 69 133 86 149 4.25e-22 90.9
MS.gene53025.t1 AT2G47520 57.143 77 30 2 62 136 37 112 7.09e-22 88.6
MS.gene53025.t1 AT4G28140 58.750 80 30 3 71 148 141 219 2.08e-21 89.7
MS.gene53025.t1 AT5G44210 41.803 122 67 2 68 189 28 145 2.24e-21 87.8
MS.gene53025.t1 AT4G11140 55.405 74 32 1 71 144 85 157 2.83e-21 89.4
MS.gene53025.t1 AT2G22200 59.420 69 26 2 73 141 71 137 4.42e-21 88.6
MS.gene53025.t1 AT1G36060 65.625 64 21 1 68 131 138 200 1.33e-20 88.2
MS.gene53025.t1 AT1G50640 64.062 64 22 1 69 132 24 86 1.52e-20 86.3
MS.gene53025.t1 AT3G20310 52.874 87 40 1 69 155 23 108 1.75e-20 86.7
MS.gene53025.t1 AT1G03800 59.701 67 26 1 65 131 45 110 1.82e-20 86.3
MS.gene53025.t1 AT1G72360 48.750 80 40 1 53 132 54 132 2.33e-20 86.3
MS.gene53025.t1 AT1G72360 54.167 72 32 1 61 132 13 83 3.54e-20 85.1
MS.gene53025.t1 AT1G22190 51.190 84 38 2 47 130 59 139 4.49e-20 85.9
MS.gene53025.t1 AT3G61630 51.220 82 35 2 69 146 101 181 4.65e-20 86.7
MS.gene53025.t1 AT3G15210 55.128 78 31 2 69 146 21 94 6.66e-20 84.3
MS.gene53025.t1 AT1G72360 53.086 81 36 2 53 132 55 134 7.56e-20 85.1
MS.gene53025.t1 AT1G28360 62.903 62 22 1 69 130 8 68 1.01e-19 83.2
MS.gene53025.t1 AT5G65130 52.381 84 33 3 53 136 96 172 1.13e-19 84.7
MS.gene53025.t1 AT4G27950 51.250 80 33 2 53 132 103 176 1.14e-19 85.9
MS.gene53025.t1 AT5G65130 52.381 84 33 3 53 136 98 174 1.29e-19 84.7
MS.gene53025.t1 AT2G20880 40.351 114 56 3 38 147 159 264 1.34e-19 85.5
MS.gene53025.t1 AT1G78080 63.492 63 22 1 68 130 147 208 2.20e-19 85.1
MS.gene53025.t1 AT5G61590 59.740 77 29 1 58 132 90 166 3.24e-19 82.0
MS.gene53025.t1 AT4G13620 65.000 60 20 1 71 130 230 288 3.42e-19 85.1
MS.gene53025.t1 AT5G18560 60.294 68 23 2 62 129 47 110 5.75e-19 84.0
MS.gene53025.t1 AT5G13910 53.750 80 32 2 50 129 1 75 6.20e-19 81.6
MS.gene53025.t1 AT4G39780 62.295 61 22 1 70 130 90 149 6.74e-19 82.8
MS.gene53025.t1 AT4G23750 49.412 85 38 2 51 131 96 179 9.83e-19 83.2
MS.gene53025.t1 AT4G23750 49.412 85 38 2 51 131 96 179 9.83e-19 83.2
MS.gene53025.t1 AT1G28370 45.263 95 48 2 36 130 24 114 1.26e-18 80.5
MS.gene53025.t1 AT1G28370 53.247 77 32 2 54 130 4 76 1.37e-18 79.7
MS.gene53025.t1 AT4G31060 51.471 68 32 1 65 132 19 85 1.91e-18 79.7
MS.gene53025.t1 AT4G32800 55.882 68 29 1 63 130 9 75 2.55e-18 80.1
MS.gene53025.t1 AT2G46310 44.231 104 42 5 73 161 99 201 4.68e-18 80.9
MS.gene53025.t1 AT4G06746 52.239 67 31 1 70 136 33 98 6.31e-18 77.4
MS.gene53025.t1 AT5G53290 57.377 61 25 1 71 131 123 182 7.00e-18 80.9
MS.gene53025.t1 AT1G28160 63.934 61 21 1 69 129 35 94 7.64e-18 79.3
MS.gene53025.t1 AT5G25810 54.054 74 33 1 57 130 20 92 7.80e-18 79.0
MS.gene53025.t1 AT5G25390 60.656 61 23 1 71 131 5 64 3.38e-17 76.6
MS.gene53025.t1 AT1G12980 59.375 64 23 2 73 134 57 119 3.48e-17 79.0
MS.gene53025.t1 AT1G12890 57.353 68 28 1 62 129 10 76 3.87e-17 77.0
MS.gene53025.t1 AT2G25820 62.069 58 21 1 73 130 26 82 5.22e-17 76.6
MS.gene53025.t1 AT1G24590 66.667 57 18 1 73 129 58 113 5.38e-17 78.2
MS.gene53025.t1 AT3G16280 58.621 58 23 1 73 130 79 135 7.00e-17 77.0
MS.gene53025.t1 AT5G25390 59.016 61 21 1 71 131 5 61 7.18e-17 75.5
MS.gene53025.t1 AT3G16280 58.621 58 23 1 73 130 61 117 7.43e-17 76.6
MS.gene53025.t1 AT3G11020 58.462 65 26 1 72 136 77 140 7.46e-17 77.8
MS.gene53025.t1 AT1G22985 58.065 62 24 1 70 129 72 133 1.03e-16 74.3
MS.gene53025.t1 AT3G50260 44.737 76 41 1 68 143 16 90 1.52e-16 73.9
MS.gene53025.t1 AT1G46768 53.030 66 30 1 71 136 29 93 1.58e-16 73.9
MS.gene53025.t1 AT1G46768 53.030 66 30 1 71 136 29 93 1.58e-16 73.9
MS.gene53025.t1 AT4G36900 52.381 63 29 1 68 130 25 86 1.64e-16 74.7
MS.gene53025.t1 AT1G46768 53.030 66 30 1 71 136 29 93 1.73e-16 73.6
MS.gene53025.t1 AT5G11590 56.452 62 26 1 69 130 47 107 2.01e-16 75.5
MS.gene53025.t1 AT1G71450 58.333 60 22 2 72 130 23 80 2.54e-16 73.9
MS.gene53025.t1 AT4G16750 46.753 77 40 1 54 130 21 96 2.68e-16 73.9
MS.gene53025.t1 AT1G75490 57.627 59 24 1 72 130 41 98 5.50e-16 73.6
MS.gene53025.t1 AT2G35700 53.226 62 28 1 69 130 41 101 6.29e-16 73.2
MS.gene53025.t1 AT5G05410 61.017 59 22 1 72 130 78 135 6.45e-16 75.1
MS.gene53025.t1 AT2G44940 53.226 62 28 1 69 130 96 156 7.98e-16 74.7
MS.gene53025.t1 AT2G23340 42.105 95 49 2 68 162 23 111 9.07e-16 72.4
MS.gene53025.t1 AT5G67190 45.205 73 39 1 68 140 16 87 9.10e-16 72.8
MS.gene53025.t1 AT5G05410 61.017 59 22 1 72 130 78 135 9.22e-16 74.7
MS.gene53025.t1 AT5G64750 63.793 58 18 2 80 135 192 248 1.27e-15 74.7
MS.gene53025.t1 AT3G60490 55.932 59 25 1 72 130 70 127 1.40e-15 73.6
MS.gene53025.t1 AT3G57600 55.172 58 25 1 73 130 28 84 2.46e-15 73.2
MS.gene53025.t1 AT2G40340 60.345 58 22 1 73 130 14 70 2.57e-15 73.2
MS.gene53025.t1 AT2G40340 60.345 58 22 1 73 130 14 70 2.57e-15 73.2
MS.gene53025.t1 AT2G40340 60.345 58 22 1 73 130 14 70 2.57e-15 73.2
MS.gene53025.t1 AT5G07310 66.129 62 20 1 69 130 88 148 3.65e-15 72.4
MS.gene53025.t1 AT4G34410 69.492 59 17 1 72 130 135 192 3.87e-15 72.4
MS.gene53025.t1 AT1G01250 52.308 65 30 1 69 133 41 104 4.06e-15 70.9
MS.gene53025.t1 AT2G40340 60.345 58 22 1 73 130 72 128 4.48e-15 73.2
MS.gene53025.t1 AT5G50080 66.154 65 21 1 69 133 82 145 4.58e-15 71.6
MS.gene53025.t1 AT2G40340 60.345 58 22 1 73 130 79 135 4.95e-15 72.8
MS.gene53025.t1 AT5G50080 66.154 65 21 1 69 133 73 136 5.15e-15 71.2
MS.gene53025.t1 AT1G15360 48.718 78 32 2 71 148 5 74 5.43e-15 70.9
MS.gene53025.t1 AT1G15360 48.718 78 32 2 71 148 5 74 5.43e-15 70.9
MS.gene53025.t1 AT2G40340 60.345 58 22 1 73 130 72 128 5.51e-15 72.4
MS.gene53025.t1 AT1G71130 53.731 67 25 2 68 129 74 139 5.62e-15 70.1
MS.gene53025.t1 AT1G43160 47.475 99 43 2 69 159 57 154 7.17e-15 70.5
MS.gene53025.t1 AT2G40350 55.932 59 25 1 73 131 67 124 1.18e-14 68.9
MS.gene53025.t1 AT2G40350 55.932 59 25 1 73 131 74 131 1.19e-14 69.3
MS.gene53025.t1 AT5G19790 48.101 79 37 3 51 129 3 77 1.78e-14 70.5
MS.gene53025.t1 AT3G14230 54.321 81 36 1 52 132 103 182 4.16e-14 70.5
MS.gene53025.t1 AT1G53170 48.352 91 46 1 43 133 1 90 4.21e-14 68.2
MS.gene53025.t1 AT3G14230 43.925 107 59 1 26 132 76 181 4.40e-14 70.5
MS.gene53025.t1 AT3G14230 54.321 81 36 1 52 132 107 186 4.83e-14 70.1
MS.gene53025.t1 AT5G21960 55.932 59 23 2 73 130 7 63 5.97e-14 68.2
MS.gene53025.t1 AT4G25480 47.887 71 36 1 73 143 51 120 7.10e-14 68.2
MS.gene53025.t1 AT5G18450 53.448 58 26 1 72 129 33 89 7.31e-14 69.3
MS.gene53025.t1 AT1G74930 44.444 81 41 3 50 130 1 77 1.25e-13 67.0
MS.gene53025.t1 AT5G25190 50.794 63 30 1 68 130 3 64 2.11e-13 66.2
MS.gene53025.t1 AT4G25490 46.479 71 37 1 73 143 48 117 2.42e-13 66.6
MS.gene53025.t1 AT4G25470 46.479 71 37 1 73 143 51 120 4.60e-13 65.9
MS.gene53025.t1 AT1G21910 42.667 75 42 1 73 147 50 123 6.21e-13 65.9
MS.gene53025.t1 AT1G53910 58.667 75 29 2 62 135 111 184 7.43e-13 66.6
MS.gene53025.t1 AT1G53910 58.667 75 29 2 62 135 113 186 7.93e-13 66.6
MS.gene53025.t1 AT1G53910 58.667 75 29 2 62 135 113 186 7.93e-13 66.6
MS.gene53025.t1 AT1G77200 53.968 63 28 1 68 130 38 99 7.96e-13 65.9
MS.gene53025.t1 AT5G51990 45.070 71 38 1 73 143 54 123 1.34e-12 64.7
MS.gene53025.t1 AT1G19210 46.774 62 30 2 70 130 9 68 2.46e-12 63.5
MS.gene53025.t1 AT1G22810 44.286 70 34 3 64 130 5 72 3.54e-12 62.0
MS.gene53025.t1 AT2G36450 50.794 63 29 2 69 130 11 72 1.03e-11 61.6
MS.gene53025.t1 AT3G54320 41.463 82 40 2 68 141 61 142 1.68e-11 63.2
MS.gene53025.t1 AT3G54320 41.463 82 40 2 68 141 61 142 1.92e-11 62.8
MS.gene53025.t1 AT1G12610 45.902 61 32 1 69 129 26 85 3.45e-11 60.8
MS.gene53025.t1 AT5G65510 33.846 130 68 4 47 162 200 325 4.15e-11 62.0
MS.gene53025.t1 AT5G65510 33.846 130 68 4 47 162 200 325 4.15e-11 62.0
MS.gene53025.t1 AT5G65510 33.846 130 68 4 47 162 142 267 4.28e-11 61.6
MS.gene53025.t1 AT5G65510 33.846 130 68 4 47 162 142 267 5.33e-11 61.6
MS.gene53025.t1 AT1G63030 50.877 57 27 1 73 129 30 85 5.54e-11 59.7
MS.gene53025.t1 AT1G63030 50.877 57 27 1 73 129 30 85 5.54e-11 59.7
MS.gene53025.t1 AT1G71520 43.939 66 30 3 70 130 11 74 5.75e-11 58.9
MS.gene53025.t1 AT1G80580 41.935 124 55 4 20 131 55 173 6.36e-11 60.5

Find 39 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATCTTGGTGCTGATTATT+TGG 0.227126 1.1:+55753686 MS.gene53025:CDS
CATTCTTTGAGAAGGAAAAT+TGG 0.247439 1.1:+55753603 MS.gene53025:CDS
TTCGGGATCGTTCTCGTTGA+AGG 0.322334 1.1:-55753208 None:intergenic
AAATCTGAAGTGGAAGAGTT+TGG 0.342337 1.1:-55753147 None:intergenic
CACCTGTTGTTGCTCTTAAG+AGG 0.354430 1.1:+55753577 MS.gene53025:CDS
ATAAGAGATTCGACGAGAAA+TGG 0.407006 1.1:+55753384 MS.gene53025:CDS
GCTGTTGTGTTTGAAGATCT+TGG 0.410603 1.1:+55753672 MS.gene53025:CDS
TAGTGCAGAAGCAGCTGCTT+TGG 0.421418 1.1:+55753434 MS.gene53025:CDS
GCCGTACAGAAGCATCTCTT+CGG 0.441401 1.1:-55753226 None:intergenic
CCGTACAGAAGCATCTCTTC+GGG 0.451128 1.1:-55753225 None:intergenic
TCGGGATCGTTCTCGTTGAA+GGG 0.456729 1.1:-55753207 None:intergenic
GGGAAGATAGTTGAATTCAT+AGG 0.463766 1.1:-55753187 None:intergenic
AGTGGAAGAGTTTGGAATTG+AGG 0.469757 1.1:-55753139 None:intergenic
GATTCTCTAACAATCTCAAC+AGG 0.472780 1.1:-55753510 None:intergenic
AATGGAATGAGGGTGTGGTT+AGG 0.473471 1.1:+55753402 MS.gene53025:CDS
ATAGTTGAATTCATAGGATG+AGG 0.493508 1.1:-55753181 None:intergenic
AGAGGAAACATTCTTTGAGA+AGG 0.505396 1.1:+55753595 MS.gene53025:CDS
AGAAGTCGTACCGAGGTGTA+AGG 0.511464 1.1:+55753331 MS.gene53025:CDS
TTCCTCTTAAGAGCAACAAC+AGG 0.517841 1.1:-55753579 None:intergenic
TGTGACGATGGTTCTGAAGA+TGG 0.521836 1.1:+55753549 MS.gene53025:CDS
TATTGCAGAAGAACCTCTCA+TGG 0.525031 1.1:-55753478 None:intergenic
CGGTACGACTTCTCCTTCCT+CGG 0.531935 1.1:-55753321 None:intergenic
ATGAATCACTGAGGAGGACA+TGG 0.532558 1.1:-55753738 None:intergenic
CGAGAAATGGAATGAGGGTG+TGG 0.554333 1.1:+55753397 MS.gene53025:CDS
ATTCGACGAGAAATGGAATG+AGG 0.563079 1.1:+55753391 MS.gene53025:CDS
TGAAGAGAACGAACCGAGGA+AGG 0.572298 1.1:+55753308 MS.gene53025:CDS
AGGTGTAAGGAGAAGACCAT+GGG 0.586469 1.1:+55753344 MS.gene53025:CDS
CCCGAAGAGATGCTTCTGTA+CGG 0.591882 1.1:+55753225 MS.gene53025:CDS
GTGACGATGGTTCTGAAGAT+GGG 0.605256 1.1:+55753550 MS.gene53025:CDS
GAATTGATGAATCACTGAGG+AGG 0.610780 1.1:-55753744 None:intergenic
TCTCAACAAAACTACAGTGA+AGG 0.614019 1.1:+55753269 MS.gene53025:CDS
TTCGACGAGAAATGGAATGA+GGG 0.617773 1.1:+55753392 MS.gene53025:CDS
ATGGTCTTCTCCTTACACCT+CGG 0.652870 1.1:-55753341 None:intergenic
AATGATATGAATTGTGACGA+TGG 0.680404 1.1:+55753537 MS.gene53025:CDS
GAGGTGTAAGGAGAAGACCA+TGG 0.701326 1.1:+55753343 MS.gene53025:CDS
AGGAAGGAGAAGTCGTACCG+AGG 0.711683 1.1:+55753324 MS.gene53025:CDS
GTTCTGAAGAGAACGAACCG+AGG 0.717262 1.1:+55753304 MS.gene53025:CDS
TTTGAATTGATGAATCACTG+AGG 0.760725 1.1:-55753747 None:intergenic
GGTGTAAGGAGAAGACCATG+GGG 0.786540 1.1:+55753345 MS.gene53025:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GTTTCAAGAAAAACAAAGAT+AGG + chr1.1:55753625-55753644 MS.gene53025:CDS 25.0%
AATGATATGAATTGTGACGA+TGG + chr1.1:55753537-55753556 MS.gene53025:CDS 30.0%
ATAGTTGAATTCATAGGATG+AGG - chr1.1:55753184-55753203 None:intergenic 30.0%
TTCTGATGAAAAATCTGAAG+TGG - chr1.1:55753160-55753179 None:intergenic 30.0%
! CATTCTTTGAGAAGGAAAAT+TGG + chr1.1:55753603-55753622 MS.gene53025:CDS 30.0%
!!! TGTAGTTTTGTTGAGATTGT+TGG - chr1.1:55753265-55753284 None:intergenic 30.0%
ATAAGAGATTCGACGAGAAA+TGG + chr1.1:55753384-55753403 MS.gene53025:CDS 35.0%
GATTCTCTAACAATCTCAAC+AGG - chr1.1:55753513-55753532 None:intergenic 35.0%
GGGAAGATAGTTGAATTCAT+AGG - chr1.1:55753190-55753209 None:intergenic 35.0%
TCTCAACAAAACTACAGTGA+AGG + chr1.1:55753269-55753288 MS.gene53025:CDS 35.0%
! AAATCTGAAGTGGAAGAGTT+TGG - chr1.1:55753150-55753169 None:intergenic 35.0%
! AGAGGAAACATTCTTTGAGA+AGG + chr1.1:55753595-55753614 MS.gene53025:CDS 35.0%
!! AGATCTTGGTGCTGATTATT+TGG + chr1.1:55753686-55753705 MS.gene53025:CDS 35.0%
ATTCGACGAGAAATGGAATG+AGG + chr1.1:55753391-55753410 MS.gene53025:CDS 40.0%
GCTGTTGTGTTTGAAGATCT+TGG + chr1.1:55753672-55753691 MS.gene53025:CDS 40.0%
TATTGCAGAAGAACCTCTCA+TGG - chr1.1:55753481-55753500 None:intergenic 40.0%
TTCCTCTTAAGAGCAACAAC+AGG - chr1.1:55753582-55753601 None:intergenic 40.0%
TTCGACGAGAAATGGAATGA+GGG + chr1.1:55753392-55753411 MS.gene53025:CDS 40.0%
! AGTGGAAGAGTTTGGAATTG+AGG - chr1.1:55753142-55753161 None:intergenic 40.0%
AGGTGTAAGGAGAAGACCAT+GGG + chr1.1:55753344-55753363 MS.gene53025:CDS 45.0%
ATGGTCTTCTCCTTACACCT+CGG - chr1.1:55753344-55753363 None:intergenic 45.0%
CACCTGTTGTTGCTCTTAAG+AGG + chr1.1:55753577-55753596 MS.gene53025:CDS 45.0%
! AATGGAATGAGGGTGTGGTT+AGG + chr1.1:55753402-55753421 MS.gene53025:CDS 45.0%
! TCTGCTGCAAATTTTCCCCA+TGG - chr1.1:55753363-55753382 None:intergenic 45.0%
!! GTGACGATGGTTCTGAAGAT+GGG + chr1.1:55753550-55753569 MS.gene53025:CDS 45.0%
!! TGTGACGATGGTTCTGAAGA+TGG + chr1.1:55753549-55753568 MS.gene53025:CDS 45.0%
!!! CAAGCTGCTTTTTCCATGAG+AGG + chr1.1:55753465-55753484 MS.gene53025:CDS 45.0%
AGAAGTCGTACCGAGGTGTA+AGG + chr1.1:55753331-55753350 MS.gene53025:CDS 50.0%
CCCGAAGAGATGCTTCTGTA+CGG + chr1.1:55753225-55753244 MS.gene53025:CDS 50.0%
CGAGAAATGGAATGAGGGTG+TGG + chr1.1:55753397-55753416 MS.gene53025:CDS 50.0%
GAGGTGTAAGGAGAAGACCA+TGG + chr1.1:55753343-55753362 MS.gene53025:CDS 50.0%
GGTGTAAGGAGAAGACCATG+GGG + chr1.1:55753345-55753364 MS.gene53025:CDS 50.0%
TAGTGCAGAAGCAGCTGCTT+TGG + chr1.1:55753434-55753453 MS.gene53025:CDS 50.0%
TCGGGATCGTTCTCGTTGAA+GGG - chr1.1:55753210-55753229 None:intergenic 50.0%
TGAAGAGAACGAACCGAGGA+AGG + chr1.1:55753308-55753327 MS.gene53025:CDS 50.0%
TTCGGGATCGTTCTCGTTGA+AGG - chr1.1:55753211-55753230 None:intergenic 50.0%
!! CCGTACAGAAGCATCTCTTC+GGG - chr1.1:55753228-55753247 None:intergenic 50.0%
!! GCCGTACAGAAGCATCTCTT+CGG - chr1.1:55753229-55753248 None:intergenic 50.0%
!! GTTCTGAAGAGAACGAACCG+AGG + chr1.1:55753304-55753323 MS.gene53025:CDS 50.0%
AGGAAGGAGAAGTCGTACCG+AGG + chr1.1:55753324-55753343 MS.gene53025:CDS 55.0%
CGGTACGACTTCTCCTTCCT+CGG - chr1.1:55753324-55753343 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 55753123 55753755 55753123 ID=MS.gene53025
chr1.1 mRNA 55753123 55753755 55753123 ID=MS.gene53025.t1;Parent=MS.gene53025
chr1.1 exon 55753123 55753755 55753123 ID=MS.gene53025.t1.exon1;Parent=MS.gene53025.t1
chr1.1 CDS 55753123 55753755 55753123 ID=cds.MS.gene53025.t1;Parent=MS.gene53025.t1
Gene Sequence

>MS.gene53025

ATGGATTCAAGTTCAACCTCAATTCCAAACTCTTCCACTTCAGATTTTTCATCAGAATCCTCATCCTATGAATTCAACTATCTTCCCTTCAACGAGAACGATCCCGAAGAGATGCTTCTGTACGGCATGATCAACGACGCCAACAATCTCAACAAAACTACAGTGAAGGAAGAAGAAGTAAGTTCTGAAGAGAACGAACCGAGGAAGGAGAAGTCGTACCGAGGTGTAAGGAGAAGACCATGGGGAAAATTTGCAGCAGAGATAAGAGATTCGACGAGAAATGGAATGAGGGTGTGGTTAGGAACGTTTGATAGTGCAGAAGCAGCTGCTTTGGCTTATGATCAAGCTGCTTTTTCCATGAGAGGTTCTTCTGCAATACTCAATTTTCCTGTTGAGATTGTTAGAGAATCGCTTAATGATATGAATTGTGACGATGGTTCTGAAGATGGGTGTTCACCTGTTGTTGCTCTTAAGAGGAAACATTCTTTGAGAAGGAAAATTGGTTTCAAGAAAAACAAAGATAGGAGCAATAATAGTAGTGTTGATAATGCTGTTGTGTTTGAAGATCTTGGTGCTGATTATTTGGAACAATTGTTGATTTCATCTGATGAGTTTCCATGTCCTCCTCAGTGA
Protein sequence

>MS.gene53025.t1

MDSSSTSIPNSSTSDFSSESSSYEFNYLPFNENDPEEMLLYGMINDANNLNKTTVKEEEVSSEENEPRKEKSYRGVRRRPWGKFAAEIRDSTRNGMRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVEIVRESLNDMNCDDGSEDGCSPVVALKRKHSLRRKIGFKKNKDRSNNSSVDNAVVFEDLGADYLEQLLISSDEFPCPPQ