Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53451.t1 | XP_003613183.1 | 95.9 | 317 | 12 | 1 | 1 | 317 | 1 | 316 | 1.10E-166 | 595.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53451.t1 | Q84JS6 | 63.3 | 330 | 105 | 5 | 1 | 317 | 1 | 327 | 4.3e-111 | 402.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53451.t1 | G7K060 | 95.9 | 317 | 12 | 1 | 1 | 317 | 1 | 316 | 8.0e-167 | 595.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene53451.t1 | TF | HB-KNOX |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051648 | MS.gene53451 | 0.812549 | 4.01E-51 | -1.69E-46 |
MS.gene052151 | MS.gene53451 | 0.806456 | 8.15E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene53451 | MS.gene44340 | PPI |
MS.gene53451 | MS.gene80724 | PPI |
MS.gene53451 | MS.gene44341 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53451.t1 | MTR_5g033720 | 97.476 | 317 | 7 | 1 | 1 | 317 | 1 | 316 | 0.0 | 647 |
MS.gene53451.t1 | MTR_1g017080 | 55.691 | 246 | 104 | 2 | 67 | 309 | 113 | 356 | 1.05e-85 | 263 |
MS.gene53451.t1 | MTR_2g024390 | 54.894 | 235 | 104 | 1 | 73 | 307 | 117 | 349 | 8.84e-82 | 252 |
MS.gene53451.t1 | MTR_1g084060 | 52.549 | 255 | 105 | 4 | 66 | 310 | 12 | 260 | 2.48e-81 | 248 |
MS.gene53451.t1 | MTR_1g084060 | 52.549 | 255 | 105 | 4 | 66 | 310 | 12 | 260 | 3.52e-81 | 249 |
MS.gene53451.t1 | MTR_5g085860 | 54.430 | 237 | 93 | 4 | 76 | 307 | 49 | 275 | 1.15e-73 | 229 |
MS.gene53451.t1 | MTR_2g461240 | 35.366 | 246 | 134 | 5 | 74 | 295 | 95 | 339 | 5.92e-35 | 130 |
MS.gene53451.t1 | MTR_1g012960 | 34.400 | 250 | 133 | 6 | 74 | 295 | 174 | 420 | 1.73e-33 | 128 |
MS.gene53451.t1 | MTR_5g011070 | 33.594 | 256 | 131 | 5 | 73 | 295 | 27 | 276 | 5.24e-33 | 124 |
MS.gene53451.t1 | MTR_3g106400 | 33.452 | 281 | 148 | 9 | 51 | 295 | 78 | 355 | 6.74e-32 | 122 |
MS.gene53451.t1 | MTR_3g106400 | 33.452 | 281 | 148 | 9 | 51 | 295 | 78 | 355 | 7.72e-32 | 122 |
MS.gene53451.t1 | MTR_3g106400 | 33.452 | 281 | 148 | 9 | 51 | 295 | 78 | 355 | 1.33e-31 | 122 |
MS.gene53451.t1 | MTR_4g116545 | 33.468 | 248 | 136 | 6 | 74 | 295 | 71 | 315 | 6.85e-31 | 119 |
MS.gene53451.t1 | MTR_4g116545 | 33.468 | 248 | 136 | 6 | 74 | 295 | 71 | 315 | 1.07e-30 | 118 |
MS.gene53451.t1 | MTR_4g019450 | 54.545 | 55 | 25 | 0 | 243 | 297 | 367 | 421 | 8.41e-13 | 69.3 |
MS.gene53451.t1 | MTR_8g078480 | 31.818 | 176 | 100 | 7 | 131 | 297 | 473 | 637 | 8.80e-13 | 69.3 |
MS.gene53451.t1 | MTR_6g071190 | 33.913 | 115 | 67 | 4 | 72 | 185 | 41 | 147 | 1.13e-12 | 65.5 |
MS.gene53451.t1 | MTR_8g098815 | 38.144 | 97 | 58 | 1 | 203 | 297 | 334 | 430 | 2.46e-12 | 67.8 |
MS.gene53451.t1 | MTR_7g065050 | 50.909 | 55 | 27 | 0 | 243 | 297 | 312 | 366 | 5.00e-12 | 66.6 |
MS.gene53451.t1 | MTR_4g051532 | 49.091 | 55 | 28 | 0 | 243 | 297 | 409 | 463 | 9.09e-12 | 66.2 |
MS.gene53451.t1 | MTR_3g112300 | 37.079 | 89 | 50 | 3 | 209 | 297 | 324 | 406 | 3.27e-11 | 64.3 |
MS.gene53451.t1 | MTR_3g112300 | 40.278 | 72 | 40 | 2 | 226 | 297 | 338 | 406 | 4.13e-11 | 63.9 |
MS.gene53451.t1 | MTR_5g018860 | 49.091 | 55 | 28 | 0 | 243 | 297 | 531 | 585 | 4.71e-11 | 63.9 |
MS.gene53451.t1 | MTR_7g106320 | 49.091 | 55 | 28 | 0 | 243 | 297 | 365 | 419 | 7.43e-11 | 63.5 |
MS.gene53451.t1 | MTR_1g057790 | 34.653 | 101 | 66 | 0 | 197 | 297 | 307 | 407 | 8.61e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53451.t1 | AT1G23380 | 65.455 | 330 | 98 | 5 | 1 | 317 | 1 | 327 | 3.13e-149 | 422 |
MS.gene53451.t1 | AT1G23380 | 65.060 | 332 | 98 | 6 | 1 | 317 | 1 | 329 | 2.64e-147 | 417 |
MS.gene53451.t1 | AT1G70510 | 62.305 | 321 | 105 | 5 | 1 | 316 | 1 | 310 | 4.05e-136 | 388 |
MS.gene53451.t1 | AT1G70510 | 61.538 | 325 | 105 | 6 | 1 | 316 | 1 | 314 | 6.11e-134 | 383 |
MS.gene53451.t1 | AT4G08150 | 54.772 | 241 | 105 | 2 | 73 | 309 | 134 | 374 | 3.53e-84 | 259 |
MS.gene53451.t1 | AT1G62360 | 54.852 | 237 | 103 | 2 | 73 | 307 | 121 | 355 | 5.60e-78 | 243 |
MS.gene53451.t1 | AT1G62990 | 33.603 | 247 | 140 | 6 | 73 | 295 | 29 | 275 | 5.52e-34 | 126 |
MS.gene53451.t1 | AT5G11060 | 34.413 | 247 | 134 | 6 | 74 | 295 | 124 | 367 | 8.93e-34 | 128 |
MS.gene53451.t1 | AT5G25220 | 34.553 | 246 | 135 | 6 | 74 | 295 | 160 | 403 | 3.00e-33 | 127 |
MS.gene53451.t1 | AT4G32040 | 34.981 | 263 | 127 | 8 | 66 | 295 | 111 | 362 | 3.02e-33 | 126 |
MS.gene53451.t1 | AT4G32040 | 34.981 | 263 | 127 | 8 | 66 | 295 | 111 | 362 | 3.65e-33 | 126 |
MS.gene53451.t1 | AT5G25220 | 34.553 | 246 | 135 | 6 | 74 | 295 | 160 | 403 | 4.54e-33 | 127 |
MS.gene53451.t1 | AT5G41410 | 39.130 | 92 | 54 | 1 | 208 | 297 | 361 | 452 | 1.86e-12 | 68.2 |
MS.gene53451.t1 | AT5G02030 | 52.727 | 55 | 26 | 0 | 243 | 297 | 355 | 409 | 2.24e-12 | 68.2 |
MS.gene53451.t1 | AT1G19700 | 36.607 | 112 | 61 | 2 | 186 | 297 | 311 | 412 | 2.94e-12 | 67.8 |
MS.gene53451.t1 | AT1G19700 | 36.607 | 112 | 61 | 2 | 186 | 297 | 311 | 412 | 2.94e-12 | 67.8 |
MS.gene53451.t1 | AT1G19700 | 36.607 | 112 | 61 | 2 | 186 | 297 | 311 | 412 | 2.94e-12 | 67.8 |
MS.gene53451.t1 | AT1G19700 | 36.607 | 112 | 61 | 2 | 186 | 297 | 311 | 412 | 2.94e-12 | 67.8 |
MS.gene53451.t1 | AT1G19700 | 36.607 | 112 | 61 | 2 | 186 | 297 | 311 | 412 | 2.94e-12 | 67.8 |
MS.gene53451.t1 | AT2G23760 | 38.235 | 102 | 55 | 4 | 201 | 297 | 387 | 485 | 3.32e-12 | 67.4 |
MS.gene53451.t1 | AT2G23760 | 38.235 | 102 | 55 | 4 | 201 | 297 | 387 | 485 | 3.32e-12 | 67.4 |
MS.gene53451.t1 | AT2G23760 | 38.235 | 102 | 55 | 4 | 201 | 297 | 387 | 485 | 3.32e-12 | 67.4 |
MS.gene53451.t1 | AT2G27220 | 50.909 | 55 | 27 | 0 | 243 | 297 | 235 | 289 | 4.01e-12 | 67.0 |
MS.gene53451.t1 | AT2G27220 | 50.909 | 55 | 27 | 0 | 243 | 297 | 235 | 289 | 4.01e-12 | 67.0 |
MS.gene53451.t1 | AT2G27220 | 50.909 | 55 | 27 | 0 | 243 | 297 | 253 | 307 | 5.23e-12 | 66.6 |
MS.gene53451.t1 | AT1G75430 | 49.091 | 55 | 28 | 0 | 243 | 297 | 209 | 263 | 1.37e-11 | 64.7 |
MS.gene53451.t1 | AT4G36870 | 30.435 | 207 | 119 | 10 | 99 | 297 | 370 | 559 | 1.70e-11 | 65.5 |
MS.gene53451.t1 | AT4G36870 | 30.435 | 207 | 119 | 10 | 99 | 297 | 370 | 559 | 1.70e-11 | 65.5 |
MS.gene53451.t1 | AT2G35940 | 33.858 | 127 | 77 | 4 | 172 | 297 | 326 | 446 | 2.06e-11 | 65.1 |
MS.gene53451.t1 | AT2G35940 | 33.858 | 127 | 77 | 4 | 172 | 297 | 326 | 446 | 2.06e-11 | 65.1 |
MS.gene53451.t1 | AT2G35940 | 33.858 | 127 | 77 | 4 | 172 | 297 | 326 | 446 | 2.06e-11 | 65.1 |
MS.gene53451.t1 | AT4G34610 | 49.091 | 55 | 28 | 0 | 243 | 297 | 321 | 375 | 4.57e-11 | 63.9 |
MS.gene53451.t1 | AT4G34610 | 49.091 | 55 | 28 | 0 | 243 | 297 | 321 | 375 | 4.57e-11 | 63.9 |
MS.gene53451.t1 | AT4G34610 | 49.091 | 55 | 28 | 0 | 243 | 297 | 321 | 375 | 4.57e-11 | 63.9 |
MS.gene53451.t1 | AT4G34610 | 49.091 | 55 | 28 | 0 | 243 | 297 | 321 | 375 | 4.57e-11 | 63.9 |
MS.gene53451.t1 | AT1G75410 | 38.824 | 85 | 51 | 1 | 213 | 297 | 324 | 407 | 5.58e-11 | 63.5 |
MS.gene53451.t1 | AT1G75410 | 38.824 | 85 | 51 | 1 | 213 | 297 | 324 | 407 | 5.58e-11 | 63.5 |
MS.gene53451.t1 | AT2G16400 | 49.091 | 55 | 28 | 0 | 243 | 297 | 292 | 346 | 5.95e-11 | 63.5 |
MS.gene53451.t1 | AT2G27990 | 50.909 | 55 | 27 | 0 | 243 | 297 | 431 | 485 | 6.85e-11 | 63.5 |
Find 74 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCAATAAACTTGCAATTTC+AGG | 0.099347 | 5.3:-22826286 | None:intergenic |
TCCCGAGCTTGATGAATTTA+TGG | 0.187854 | 5.3:+22826375 | MS.gene53451:CDS |
TCCTGAAATTGCAAGTTTAT+TGG | 0.199892 | 5.3:+22826285 | MS.gene53451:CDS |
CGCAAATTTGGAAGTCATAT+TGG | 0.217603 | 5.3:+22833950 | MS.gene53451:CDS |
GCTTCAGTTCCAACTGCTTC+TGG | 0.217937 | 5.3:+22826620 | MS.gene53451:CDS |
TCATATTGGTACTTTGAAAT+TGG | 0.238802 | 5.3:+22833964 | MS.gene53451:CDS |
TCGCCTCCTTCAAGCTTATA+TGG | 0.243547 | 5.3:+22826136 | MS.gene53451:CDS |
ACCAATTGTTAATTTGCTTC+TGG | 0.259235 | 5.3:-22834212 | None:intergenic |
AATGTTTGTCTTGCTTCTTT+TGG | 0.292821 | 5.3:-22834019 | None:intergenic |
GTCGTTGTTTCCACGTGTTT+TGG | 0.333962 | 5.3:+22826346 | MS.gene53451:CDS |
TGAAGGAGGCGAGGGTAATA+AGG | 0.352087 | 5.3:-22826125 | None:intergenic |
TTAATCAAAGAAAACGTCAT+TGG | 0.361817 | 5.3:+22834238 | MS.gene53451:CDS |
ATTGAGTTGGCTAAGTCAAC+AGG | 0.362593 | 5.3:+22834183 | MS.gene53451:CDS |
GATTCTCCGGTGTCATCATC+AGG | 0.373798 | 5.3:-22825935 | None:intergenic |
ACCAGAAGCAAATTAACAAT+TGG | 0.400017 | 5.3:+22834211 | MS.gene53451:CDS |
AACGTTGTAGCTTCGTCAAA+AGG | 0.422258 | 5.3:-22826542 | None:intergenic |
AGATGATGGTGGTGCATCTT+CGG | 0.425255 | 5.3:+22833844 | MS.gene53451:intron |
TCGCCGTATTCCACTGTTGT+TGG | 0.437685 | 5.3:-22825906 | None:intergenic |
GGCAATCCATATAAGCTTGA+AGG | 0.441233 | 5.3:-22826142 | None:intergenic |
CGGTTTCTTTCTGAAGAATG+AGG | 0.456559 | 5.3:+22834309 | MS.gene53451:CDS |
GGTGGAATGTTCACTACAAA+TGG | 0.464796 | 5.3:+22834050 | MS.gene53451:CDS |
CAAGACAAACATTACTTCAA+TGG | 0.465456 | 5.3:+22834029 | MS.gene53451:CDS |
TGAAATTGCAAGTTTATTGG+AGG | 0.470197 | 5.3:+22826288 | MS.gene53451:CDS |
ACCAACCGAATTCCTATGTT+CGG | 0.480437 | 5.3:+22826008 | MS.gene53451:CDS |
GACCATAAATTCATCAAGCT+CGG | 0.486176 | 5.3:-22826377 | None:intergenic |
CGGATCCGAACATAGGAATT+CGG | 0.490352 | 5.3:-22826013 | None:intergenic |
AAGATCGTGAGCTCAAAGAT+AGG | 0.491803 | 5.3:+22833921 | MS.gene53451:CDS |
GAAATATTTACCGTAGGGTA+AGG | 0.498999 | 5.3:-22834073 | None:intergenic |
AGCTTATATGGATTGCCAAA+AGG | 0.501841 | 5.3:+22826148 | MS.gene53451:CDS |
CTCAGTCATCTCTGCACTGG+TGG | 0.506127 | 5.3:+22826587 | MS.gene53451:CDS |
CTTCGTCAAAAGGTCGAGTA+AGG | 0.512678 | 5.3:-22826532 | None:intergenic |
ACCATAAATTCATCAAGCTC+GGG | 0.523273 | 5.3:-22826376 | None:intergenic |
GAAAATTGCATATTCTCAGA+TGG | 0.531157 | 5.3:-22834264 | None:intergenic |
GTCGGGAAGATTAGATTCTC+CGG | 0.538481 | 5.3:-22825948 | None:intergenic |
ATGTTCAAGATGGACAATCA+AGG | 0.539011 | 5.3:+22833894 | MS.gene53451:CDS |
AAATTCATCAAGCTCGGGAT+CGG | 0.546306 | 5.3:-22826371 | None:intergenic |
GGAAACTGTTGTAGTCCGTC+GGG | 0.552292 | 5.3:-22825965 | None:intergenic |
GTACCAACAACAGTGGAATA+CGG | 0.552491 | 5.3:+22825903 | MS.gene53451:CDS |
ATATCGTCGGATCCGAACAT+AGG | 0.553879 | 5.3:-22826020 | None:intergenic |
CTACAAATGGCCTTACCCTA+CGG | 0.555178 | 5.3:+22834063 | MS.gene53451:CDS |
CAACTCAGTCATCTCTGCAC+TGG | 0.557500 | 5.3:+22826584 | MS.gene53451:CDS |
AGGAAACTGTTGTAGTCCGT+CGG | 0.558704 | 5.3:-22825966 | None:intergenic |
CGGATCCGACGATATCTTCA+CGG | 0.574581 | 5.3:+22826028 | MS.gene53451:CDS |
ACAAACAAACCAGAAGCAGT+TGG | 0.575932 | 5.3:-22826629 | None:intergenic |
CGACGATATCTTCACGGCGG+CGG | 0.576617 | 5.3:+22826034 | MS.gene53451:CDS |
TGTTCAAGATGGACAATCAA+GGG | 0.577717 | 5.3:+22833895 | MS.gene53451:CDS |
TCCGAACATAGGAATTCGGT+TGG | 0.578896 | 5.3:-22826009 | None:intergenic |
TCGGACGAAGATCTTAGTAC+AGG | 0.580602 | 5.3:+22833863 | MS.gene53451:CDS |
GACAAACATTACTTCAATGG+TGG | 0.584232 | 5.3:+22834032 | MS.gene53451:CDS |
GGTTTCTTTCTGAAGAATGA+GGG | 0.584785 | 5.3:+22834310 | MS.gene53451:CDS |
GGAAGCTGATAAGATTGAGT+TGG | 0.588630 | 5.3:+22834170 | MS.gene53451:intron |
GGAGATGGTGATGTTCAAGA+TGG | 0.589542 | 5.3:+22833884 | MS.gene53451:CDS |
GAAGATCTTAGTACAGGAGA+TGG | 0.592331 | 5.3:+22833869 | MS.gene53451:CDS |
CGCCGCAATTCAAGATGACG+TGG | 0.594449 | 5.3:+22826067 | MS.gene53451:CDS |
AATTCGGTTGGTTGATGAAG+TGG | 0.597505 | 5.3:-22825997 | None:intergenic |
CACGTCATCTTGAATTGCGG+CGG | 0.616624 | 5.3:-22826066 | None:intergenic |
AATAAACTTGCAATTTCAGG+AGG | 0.620737 | 5.3:-22826283 | None:intergenic |
ATTCTCCGGTGTCATCATCA+GGG | 0.622803 | 5.3:-22825934 | None:intergenic |
ATATAAGCTTGAAGGAGGCG+AGG | 0.629211 | 5.3:-22826134 | None:intergenic |
TATAAGCTTGAAGGAGGCGA+GGG | 0.630284 | 5.3:-22826133 | None:intergenic |
TCGGTTGGTTGATGAAGTGG+TGG | 0.632474 | 5.3:-22825994 | None:intergenic |
TTGATGAAGTGGTGGACATG+AGG | 0.640994 | 5.3:-22825986 | None:intergenic |
TGCCACGTCATCTTGAATTG+CGG | 0.644950 | 5.3:-22826069 | None:intergenic |
TTTGTTTCGCTAGATGATGG+TGG | 0.653500 | 5.3:+22833833 | MS.gene53451:intron |
TTGAGTTGGCTAAGTCAACA+GGG | 0.662111 | 5.3:+22834184 | MS.gene53451:CDS |
CAAATCCCTGATGATGACAC+CGG | 0.663407 | 5.3:+22825929 | MS.gene53451:CDS |
AATCCATATAAGCTTGAAGG+AGG | 0.666838 | 5.3:-22826139 | None:intergenic |
CGCCGCCGTGAAGATATCGT+CGG | 0.671280 | 5.3:-22826033 | None:intergenic |
GTTCAAGATGGACAATCAAG+GGG | 0.671513 | 5.3:+22833896 | MS.gene53451:CDS |
GGAGAATCTAATCTTCCCGA+CGG | 0.681800 | 5.3:+22825950 | MS.gene53451:CDS |
ACGTTGATGGAAGAAATGTA+CGG | 0.686623 | 5.3:+22825879 | None:intergenic |
GTACGGAGTACCAACAACAG+TGG | 0.698660 | 5.3:+22825896 | MS.gene53451:CDS |
GGGATCGGCTCCAAAACACG+TGG | 0.709131 | 5.3:-22826356 | None:intergenic |
ATCCGACGATATCTTCACGG+CGG | 0.757078 | 5.3:+22826031 | MS.gene53451:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 22825885 | 22834329 | 22825885 | ID=MS.gene53451 |
chr5.3 | mRNA | 22825885 | 22834329 | 22825885 | ID=MS.gene53451.t1;Parent=MS.gene53451 |
chr5.3 | exon | 22825885 | 22826169 | 22825885 | ID=MS.gene53451.t1.exon1;Parent=MS.gene53451.t1 |
chr5.3 | CDS | 22825885 | 22826169 | 22825885 | ID=cds.MS.gene53451.t1;Parent=MS.gene53451.t1 |
chr5.3 | exon | 22826274 | 22826396 | 22826274 | ID=MS.gene53451.t1.exon2;Parent=MS.gene53451.t1 |
chr5.3 | CDS | 22826274 | 22826396 | 22826274 | ID=cds.MS.gene53451.t1;Parent=MS.gene53451.t1 |
chr5.3 | exon | 22826494 | 22826641 | 22826494 | ID=MS.gene53451.t1.exon3;Parent=MS.gene53451.t1 |
chr5.3 | CDS | 22826494 | 22826641 | 22826494 | ID=cds.MS.gene53451.t1;Parent=MS.gene53451.t1 |
chr5.3 | exon | 22833846 | 22834084 | 22833846 | ID=MS.gene53451.t1.exon4;Parent=MS.gene53451.t1 |
chr5.3 | CDS | 22833846 | 22834084 | 22833846 | ID=cds.MS.gene53451.t1;Parent=MS.gene53451.t1 |
chr5.3 | exon | 22834171 | 22834329 | 22834171 | ID=MS.gene53451.t1.exon5;Parent=MS.gene53451.t1 |
chr5.3 | CDS | 22834171 | 22834329 | 22834171 | ID=cds.MS.gene53451.t1;Parent=MS.gene53451.t1 |
Gene Sequence |
Protein sequence |