Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53674.t1 | XP_013467214.1 | 98.7 | 462 | 6 | 0 | 1 | 462 | 1 | 462 | 1.30E-253 | 885.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53674.t1 | Q56WD9 | 84.7 | 463 | 69 | 2 | 1 | 462 | 1 | 462 | 4.4e-221 | 768.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53674.t1 | A0A072VIH3 | 98.7 | 462 | 6 | 0 | 1 | 462 | 1 | 462 | 9.6e-254 | 885.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53674 | MS.gene062514 | PPI |
| MS.gene004403 | MS.gene53674 | PPI |
| MS.gene53674 | MS.gene05839 | PPI |
| MS.gene53674 | MS.gene96250 | PPI |
| MS.gene38144 | MS.gene53674 | PPI |
| MS.gene53674 | MS.gene57887 | PPI |
| MS.gene020954 | MS.gene53674 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53674.t1 | MTR_1g047210 | 98.701 | 462 | 6 | 0 | 1 | 462 | 1 | 462 | 0.0 | 931 |
| MS.gene53674.t1 | MTR_4g022430 | 77.551 | 441 | 92 | 2 | 1 | 441 | 1 | 434 | 0.0 | 695 |
| MS.gene53674.t1 | MTR_4g134090 | 34.804 | 408 | 227 | 10 | 52 | 438 | 7 | 396 | 6.16e-60 | 202 |
| MS.gene53674.t1 | MTR_4g134090 | 34.804 | 408 | 227 | 10 | 52 | 438 | 14 | 403 | 9.06e-60 | 201 |
| MS.gene53674.t1 | MTR_5g098310 | 33.952 | 377 | 226 | 7 | 52 | 414 | 16 | 383 | 2.07e-54 | 187 |
| MS.gene53674.t1 | MTR_0449s0040 | 32.070 | 343 | 210 | 7 | 52 | 380 | 16 | 349 | 6.65e-40 | 147 |
| MS.gene53674.t1 | MTR_4g134090 | 30.916 | 262 | 144 | 9 | 52 | 292 | 7 | 252 | 1.53e-20 | 92.0 |
| MS.gene53674.t1 | MTR_0837s0020 | 35.135 | 111 | 72 | 0 | 60 | 170 | 808 | 918 | 2.19e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53674.t1 | AT2G33150 | 84.665 | 463 | 69 | 2 | 1 | 462 | 1 | 462 | 0.0 | 795 |
| MS.gene53674.t1 | AT1G04710 | 81.375 | 451 | 75 | 2 | 1 | 451 | 1 | 442 | 0.0 | 744 |
| MS.gene53674.t1 | AT5G48880 | 72.026 | 454 | 119 | 3 | 1 | 450 | 1 | 450 | 0.0 | 671 |
| MS.gene53674.t1 | AT5G48880 | 72.026 | 454 | 119 | 3 | 1 | 450 | 1 | 450 | 0.0 | 671 |
| MS.gene53674.t1 | AT5G48880 | 72.026 | 454 | 119 | 3 | 1 | 450 | 1 | 450 | 0.0 | 671 |
| MS.gene53674.t1 | AT5G48880 | 76.108 | 406 | 95 | 1 | 47 | 450 | 2 | 407 | 0.0 | 647 |
| MS.gene53674.t1 | AT5G48230 | 36.483 | 381 | 211 | 9 | 52 | 414 | 7 | 374 | 1.96e-60 | 202 |
| MS.gene53674.t1 | AT5G48230 | 36.483 | 381 | 211 | 9 | 52 | 414 | 12 | 379 | 2.00e-60 | 203 |
| MS.gene53674.t1 | AT5G47720 | 34.865 | 370 | 215 | 9 | 84 | 438 | 45 | 403 | 1.05e-58 | 199 |
| MS.gene53674.t1 | AT5G47720 | 34.865 | 370 | 215 | 9 | 84 | 438 | 45 | 403 | 1.05e-58 | 199 |
| MS.gene53674.t1 | AT5G47720 | 34.865 | 370 | 215 | 9 | 84 | 438 | 45 | 403 | 1.06e-58 | 198 |
| MS.gene53674.t1 | AT5G47720 | 34.865 | 370 | 215 | 9 | 84 | 438 | 45 | 403 | 1.06e-58 | 198 |
| MS.gene53674.t1 | AT5G47720 | 34.865 | 370 | 215 | 9 | 84 | 438 | 52 | 410 | 1.21e-58 | 198 |
Find 117 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGGAAGGAGGCAGTTT+TGG | 0.225837 | 1.1:-30180307 | None:intergenic |
| TACCCATTCTTGGTGTATTC+AGG | 0.235250 | 1.1:+30180953 | MS.gene53674:CDS |
| GCAAATACCTTGGTTGAAAC+TGG | 0.299711 | 1.1:-30180557 | None:intergenic |
| TCACAAAAGATCAATGTTAA+TGG | 0.316985 | 1.1:+30182864 | MS.gene53674:CDS |
| CTGATGTAGCTGCTGCTATA+AGG | 0.320959 | 1.1:+30179959 | MS.gene53674:CDS |
| TTCACAGGCTTCAGCATGTT+TGG | 0.320972 | 1.1:+30179293 | MS.gene53674:intron |
| ATTGTTGTCGGTTCTGTATT+GGG | 0.330737 | 1.1:+30179743 | MS.gene53674:CDS |
| GAAAAGGTTGTCCCCTTTGC+GGG | 0.341498 | 1.1:-30183603 | None:intergenic |
| GCGGCTGCTGCTACTGCTGC+TGG | 0.346344 | 1.1:+30180512 | MS.gene53674:CDS |
| CGTGGCAAGGACTGCCGATA+TGG | 0.352522 | 1.1:+30183401 | MS.gene53674:CDS |
| AATGGCAATTGGGCATCCTT+TGG | 0.353600 | 1.1:+30182893 | MS.gene53674:CDS |
| TATCACAGGACAGCTGCATT+TGG | 0.360508 | 1.1:+30179333 | MS.gene53674:CDS |
| ATCACAGGACAGCTGCATTT+GGG | 0.364031 | 1.1:+30179334 | MS.gene53674:CDS |
| GAAAATGTTGCCAATCGCTT+TGG | 0.377320 | 1.1:+30180341 | MS.gene53674:CDS |
| CAAAAGGGGCTACCCATTCT+TGG | 0.386260 | 1.1:+30180943 | MS.gene53674:CDS |
| TATTGTTGTCGGTTCTGTAT+TGG | 0.386914 | 1.1:+30179742 | MS.gene53674:CDS |
| GTTAACAGACAATGTTCATC+TGG | 0.392525 | 1.1:+30179922 | MS.gene53674:CDS |
| GCAACTGGAATTGCAGCAGC+TGG | 0.394353 | 1.1:-30182652 | None:intergenic |
| TTTAGGTATTGGTGCCGGTT+TGG | 0.402358 | 1.1:+30180080 | MS.gene53674:intron |
| CTAATTCTAGCGAGCATCCT+TGG | 0.404438 | 1.1:-30183630 | None:intergenic |
| CCTGCAGCCTTCACAGCAAC+TGG | 0.406034 | 1.1:-30182667 | None:intergenic |
| GGGCATCCTTTGGGAGCAAC+AGG | 0.407923 | 1.1:+30182903 | MS.gene53674:CDS |
| ATGGCAATTGGGCATCCTTT+GGG | 0.407928 | 1.1:+30182894 | MS.gene53674:CDS |
| TTGTGAGCAGGTACTGGAAT+GGG | 0.418268 | 1.1:+30183530 | MS.gene53674:intron |
| AGAAATAAAACCTTCAAAAC+AGG | 0.419403 | 1.1:-30179585 | None:intergenic |
| GTCACCATTTCCGTTGATGA+TGG | 0.426385 | 1.1:+30180686 | MS.gene53674:CDS |
| GTCGGTTCTGTATTGGGAGC+TGG | 0.433413 | 1.1:+30179749 | MS.gene53674:CDS |
| CCAATCGCTTTGGAGTTTCA+AGG | 0.435048 | 1.1:+30180351 | MS.gene53674:CDS |
| AATGGAGGTGCAATGGCAAT+TGG | 0.436198 | 1.1:+30182882 | MS.gene53674:CDS |
| AATTCCATCATCAACGGAAA+TGG | 0.437634 | 1.1:-30180690 | None:intergenic |
| CCTTGAAACTCCAAAGCGAT+TGG | 0.443317 | 1.1:-30180351 | None:intergenic |
| CCAGTTGCTGTGAAGGCTGC+AGG | 0.443727 | 1.1:+30182667 | MS.gene53674:CDS |
| AAGAAGTATCGCAATGCAAA+AGG | 0.444639 | 1.1:+30180927 | MS.gene53674:CDS |
| TGGTGTTGATCCTGCCATCA+TGG | 0.449169 | 1.1:+30182621 | MS.gene53674:CDS |
| TGATGTAGCTGCTGCTATAA+GGG | 0.452992 | 1.1:+30179960 | MS.gene53674:CDS |
| CAAAACTGCCTCCTTCCAAT+GGG | 0.459453 | 1.1:+30180308 | MS.gene53674:CDS |
| AGCTTTGCAATGCCCGCAAA+GGG | 0.463134 | 1.1:+30183591 | MS.gene53674:CDS |
| ACACAGCTTTAAGCTTTCCT+AGG | 0.466091 | 1.1:-30180736 | None:intergenic |
| CACTCACCCTGATGATATCC+TGG | 0.468253 | 1.1:+30179560 | MS.gene53674:CDS |
| ACAGGAGCCAGGATATCATC+AGG | 0.471003 | 1.1:-30179567 | None:intergenic |
| ATCCAGAGACTGTGCCGGTT+AGG | 0.477289 | 1.1:+30179896 | MS.gene53674:intron |
| TGCCATTGGATTAGTTGTCA+TGG | 0.478121 | 1.1:-30180106 | None:intergenic |
| AACTTGAACCCAAGTGAAGT+TGG | 0.479113 | 1.1:+30179716 | MS.gene53674:CDS |
| TGCAATTCCAGTTGCTGTGA+AGG | 0.480592 | 1.1:+30182660 | MS.gene53674:CDS |
| ACAATATCTCCAACTTCACT+TGG | 0.482345 | 1.1:-30179725 | None:intergenic |
| ATGGAGGTGCAATGGCAATT+GGG | 0.483934 | 1.1:+30182883 | MS.gene53674:CDS |
| AGTTGTCATGGATTCCAAAC+CGG | 0.484869 | 1.1:-30180094 | None:intergenic |
| TAGGTCAGCTAATGATGCAT+TGG | 0.487397 | 1.1:-30180717 | None:intergenic |
| CAGGCTTCAGCATGTTTGGC+GGG | 0.489612 | 1.1:+30179297 | MS.gene53674:intron |
| TGTCTGTTAACTGTCCTAAC+CGG | 0.490107 | 1.1:-30179910 | None:intergenic |
| AGATGTGGAAGATGAATCAT+TGG | 0.491739 | 1.1:-30178538 | None:intergenic |
| GAAGTTGGAGATATTGTTGT+CGG | 0.492011 | 1.1:+30179731 | MS.gene53674:CDS |
| CCAAAACTGCCTCCTTCCAA+TGG | 0.495559 | 1.1:+30180307 | MS.gene53674:CDS |
| ACTGATCCATCCCATGCCAT+TGG | 0.498873 | 1.1:-30180120 | None:intergenic |
| GGGCCAACACCCATGATGGC+AGG | 0.504707 | 1.1:-30182631 | None:intergenic |
| GTACCTGAATACACCAAGAA+TGG | 0.508482 | 1.1:-30180956 | None:intergenic |
| AGAAGTATCGCAATGCAAAA+GGG | 0.509441 | 1.1:+30180928 | MS.gene53674:CDS |
| GTAGCTGCTGCTATAAGGGC+TGG | 0.512492 | 1.1:+30179964 | MS.gene53674:CDS |
| AGGTCAGCTAATGATGCATT+GGG | 0.514870 | 1.1:-30180716 | None:intergenic |
| ACATGGATATTACTCCATAT+CGG | 0.516143 | 1.1:-30183415 | None:intergenic |
| ACAGGCTTCAGCATGTTTGG+CGG | 0.517549 | 1.1:+30179296 | MS.gene53674:intron |
| TACCTGAATACACCAAGAAT+GGG | 0.522492 | 1.1:-30180955 | None:intergenic |
| TGTAGGAGTTTCGTCGCAGT+TGG | 0.529855 | 1.1:+30182601 | MS.gene53674:intron |
| GATCCTGCCATCATGGGTGT+TGG | 0.532689 | 1.1:+30182628 | MS.gene53674:CDS |
| AATCAAGTCCTAGCTTGTTA+CGG | 0.534024 | 1.1:-30182842 | None:intergenic |
| AACTTCACTTGGGTTCAAGT+TGG | 0.534134 | 1.1:-30179714 | None:intergenic |
| GAGCATCCTTGGATAAGAAA+AGG | 0.536509 | 1.1:-30183619 | None:intergenic |
| AGCTGGGCCAACACCCATGA+TGG | 0.538149 | 1.1:-30182635 | None:intergenic |
| CAACTGGAATTGCAGCAGCT+GGG | 0.538167 | 1.1:-30182651 | None:intergenic |
| TGAAATGAAGCGACGTGGCA+AGG | 0.538544 | 1.1:+30183388 | MS.gene53674:CDS |
| CAGAGGTAATCCCCATTGGA+AGG | 0.540583 | 1.1:-30180319 | None:intergenic |
| AGAAAAGGTTGTCCCCTTTG+CGG | 0.541326 | 1.1:-30183604 | None:intergenic |
| AAACCTTCAAAACAGGAGCC+AGG | 0.542608 | 1.1:-30179578 | None:intergenic |
| AAAGACGGAACCACCACTGC+TGG | 0.543818 | 1.1:+30180764 | MS.gene53674:CDS |
| GGTGTTGATCCTGCCATCAT+GGG | 0.545097 | 1.1:+30182622 | MS.gene53674:CDS |
| GTATATTGCCGTAACAAGCT+AGG | 0.554751 | 1.1:+30182834 | MS.gene53674:CDS |
| CTCCAGCACCATCACTCACC+TGG | 0.557295 | 1.1:-30180888 | None:intergenic |
| GTTGATAGGTTGAGTCTCAC+AGG | 0.558743 | 1.1:+30180486 | MS.gene53674:intron |
| TGATCTTATACCAGCAGTGG+TGG | 0.567622 | 1.1:-30180774 | None:intergenic |
| AGCCAGGTGAGTGATGGTGC+TGG | 0.568071 | 1.1:+30180886 | MS.gene53674:CDS |
| GACAACTAATCCAATGGCAT+GGG | 0.568175 | 1.1:+30180110 | MS.gene53674:CDS |
| ATTGTGAGCAGGTACTGGAA+TGG | 0.569253 | 1.1:+30183529 | MS.gene53674:intron |
| TGACAACTAATCCAATGGCA+TGG | 0.569744 | 1.1:+30180109 | MS.gene53674:CDS |
| TTATGATCTTATACCAGCAG+TGG | 0.573440 | 1.1:-30180777 | None:intergenic |
| GAGCTTTGCAATGCCCGCAA+AGG | 0.573513 | 1.1:+30183590 | MS.gene53674:CDS |
| CAATGTTAATGGAGGTGCAA+TGG | 0.575127 | 1.1:+30182875 | MS.gene53674:CDS |
| TATGTGTTTGCAGTGCATAT+CGG | 0.578334 | 1.1:+30179499 | MS.gene53674:intron |
| GAAACAAACATCGAGAGATG+TGG | 0.581606 | 1.1:-30178553 | None:intergenic |
| AAGAGCTAGTGAATGTCGTA+TGG | 0.581957 | 1.1:+30179778 | MS.gene53674:CDS |
| ATCCATGACAACTAATCCAA+TGG | 0.583716 | 1.1:+30180104 | MS.gene53674:CDS |
| GAGACAGTGCTGCTTATCAC+AGG | 0.584230 | 1.1:+30179319 | MS.gene53674:CDS |
| TGTGAGCAGGTACTGGAATG+GGG | 0.588396 | 1.1:+30183531 | MS.gene53674:intron |
| TCACAGGACAGCTGCATTTG+GGG | 0.588788 | 1.1:+30179335 | MS.gene53674:CDS |
| GGAGTAATATCCATGTGCAT+TGG | 0.596790 | 1.1:+30183422 | MS.gene53674:CDS |
| TATATACCTGTTGCTCCCAA+AGG | 0.599601 | 1.1:-30182909 | None:intergenic |
| AATTCTAGCCAGGTGAGTGA+TGG | 0.600677 | 1.1:+30180880 | MS.gene53674:CDS |
| CAAAAGATCAATGTTAATGG+AGG | 0.602551 | 1.1:+30182867 | MS.gene53674:CDS |
| CAATATCTCCAACTTCACTT+GGG | 0.604564 | 1.1:-30179724 | None:intergenic |
| ACTAATCCAATGGCATGGGA+TGG | 0.605555 | 1.1:+30180114 | MS.gene53674:CDS |
| GAAGTATCGCAATGCAAAAG+GGG | 0.615830 | 1.1:+30180929 | MS.gene53674:CDS |
| AAAGCTGTGTTCAAGAAAGA+CGG | 0.620023 | 1.1:+30180749 | MS.gene53674:CDS |
| CTTTGCAAAGCTAAACGTGG+TGG | 0.621994 | 1.1:+30179528 | MS.gene53674:CDS |
| GGGTCGAATTCCATCATCAA+CGG | 0.625070 | 1.1:-30180696 | None:intergenic |
| AGCTGCATTTGGGGACGATG+TGG | 0.625487 | 1.1:+30179344 | MS.gene53674:CDS |
| TTTCCATCCAGAGACTGTGC+CGG | 0.626929 | 1.1:+30179891 | MS.gene53674:intron |
| TTAACAGACAATGTTCATCT+GGG | 0.630670 | 1.1:+30179923 | MS.gene53674:CDS |
| GTGAGCAGGTACTGGAATGG+GGG | 0.647925 | 1.1:+30183532 | MS.gene53674:intron |
| AATCATTCCAGTTTCAACCA+AGG | 0.649167 | 1.1:+30180550 | MS.gene53674:CDS |
| AGTGAGTGTACCAATGCACA+TGG | 0.653800 | 1.1:-30183432 | None:intergenic |
| AGGTAATCCCCATTGGAAGG+AGG | 0.656135 | 1.1:-30180316 | None:intergenic |
| CAGGAGCCAGGATATCATCA+GGG | 0.656738 | 1.1:-30179566 | None:intergenic |
| GGTTGAGTCTCACAGGCGAG+CGG | 0.670559 | 1.1:+30180493 | MS.gene53674:intron |
| AAAACTGCCTCCTTCCAATG+GGG | 0.685024 | 1.1:+30180309 | MS.gene53674:CDS |
| AATGCATCATTAGCTGACCT+AGG | 0.687871 | 1.1:+30180719 | MS.gene53674:CDS |
| GCTTTGCAATGCCCGCAAAG+GGG | 0.689691 | 1.1:+30183592 | MS.gene53674:CDS |
| TTGCATGAAATGAAGCGACG+TGG | 0.723164 | 1.1:+30183383 | MS.gene53674:CDS |
| GCTCTTTGCAAAGCTAAACG+TGG | 0.726080 | 1.1:+30179525 | MS.gene53674:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAACAATATTAACTATA+TGG | - | chr1.1:30183505-30183524 | None:intergenic | 10.0% |
| !! | ATTAAATGAAATAATTAATC+TGG | - | chr1.1:30180191-30180210 | None:intergenic | 10.0% |
| !! | ATTAATTACAGAATATAATA+GGG | + | chr1.1:30181804-30181823 | MS.gene53674:intron | 10.0% |
| !! | TATTAATTACAGAATATAAT+AGG | + | chr1.1:30181803-30181822 | MS.gene53674:intron | 10.0% |
| !!! | ATTTCAATTTGTTTTATTTT+TGG | + | chr1.1:30183330-30183349 | MS.gene53674:intron | 10.0% |
| !!! | ATTTTAAAATAATAATACAG+GGG | - | chr1.1:30181780-30181799 | None:intergenic | 10.0% |
| !!! | CATTTTAAAATAATAATACA+GGG | - | chr1.1:30181781-30181800 | None:intergenic | 10.0% |
| !!! | TCATTTAATTTTTTCAATTT+TGG | + | chr1.1:30180202-30180221 | MS.gene53674:intron | 10.0% |
| !!! | TCATTTTAAAATAATAATAC+AGG | - | chr1.1:30181782-30181801 | None:intergenic | 10.0% |
| !!! | TTTCAATTTGTTTTATTTTT+GGG | + | chr1.1:30183331-30183350 | MS.gene53674:intron | 10.0% |
| !! | AAATAAAATTGGTACTTATA+TGG | - | chr1.1:30181303-30181322 | None:intergenic | 15.0% |
| !! | AATGATTTGAATATATATTC+AGG | + | chr1.1:30182794-30182813 | MS.gene53674:intron | 15.0% |
| !! | GAATATAGTTTAATATTTGT+TGG | + | chr1.1:30179090-30179109 | MS.gene53674:intron | 15.0% |
| !! | TAATAATTAGAATGAATTTG+AGG | - | chr1.1:30180818-30180837 | None:intergenic | 15.0% |
| !!! | TTCTATAAAAGTATATGAAT+TGG | + | chr1.1:30179058-30179077 | MS.gene53674:intron | 15.0% |
| !! | AAGTATATTTCATATTCATG+TGG | + | chr1.1:30178773-30178792 | MS.gene53674:intron | 20.0% |
| !! | ACAATTATATAATGCACTTT+GGG | - | chr1.1:30181405-30181424 | None:intergenic | 20.0% |
| !! | ACTAAGTAACAAATAATAAC+TGG | + | chr1.1:30183289-30183308 | MS.gene53674:intron | 20.0% |
| !! | CCTAAACAAAAAATAGTTAA+AGG | - | chr1.1:30180066-30180085 | None:intergenic | 20.0% |
| !! | GAAAAATACATGAACATATT+AGG | - | chr1.1:30183194-30183213 | None:intergenic | 20.0% |
| !! | GTTAAAGGTAAAACAATATA+CGG | - | chr1.1:30180051-30180070 | None:intergenic | 20.0% |
| !! | TATGGAAAAAAAGAATATGA+AGG | - | chr1.1:30181969-30181988 | None:intergenic | 20.0% |
| !! | TATTTGTGGATAATTTAGAA+AGG | + | chr1.1:30181533-30181552 | MS.gene53674:intron | 20.0% |
| !! | TCTTAAAATAATACCTCTAA+CGG | + | chr1.1:30180227-30180246 | MS.gene53674:intron | 20.0% |
| !! | TGTGTTTATGTATGTATATA+TGG | + | chr1.1:30179170-30179189 | MS.gene53674:intron | 20.0% |
| !!! | ACTATTTTTTGTTTAGGTAT+TGG | + | chr1.1:30180069-30180088 | MS.gene53674:intron | 20.0% |
| !!! | CAATGAGATGATTTTTAAAT+TGG | - | chr1.1:30182523-30182542 | None:intergenic | 20.0% |
| !!! | CATATATAATTTGAGTTTTG+AGG | + | chr1.1:30178940-30178959 | MS.gene53674:intron | 20.0% |
| !!! | CCTTTAACTATTTTTTGTTT+AGG | + | chr1.1:30180063-30180082 | MS.gene53674:intron | 20.0% |
| !!! | TATGATTTCCTTTATTTTTG+TGG | - | chr1.1:30178924-30178943 | None:intergenic | 20.0% |
| !!! | TATTAGGTTATTTTAGCTAT+AGG | - | chr1.1:30183178-30183197 | None:intergenic | 20.0% |
| !!! | TATTTGATTTGATGAAAATG+TGG | - | chr1.1:30182339-30182358 | None:intergenic | 20.0% |
| !!! | TGATCTTTTTGAAATAAATG+AGG | + | chr1.1:30182708-30182727 | MS.gene53674:CDS | 20.0% |
| !!! | TTATCCTTATCTTTTTGAAT+TGG | + | chr1.1:30178976-30178995 | MS.gene53674:intron | 20.0% |
| !!! | TTTATTAACCGATTTCAAAT+TGG | + | chr1.1:30181016-30181035 | MS.gene53674:intron | 20.0% |
| !!! | TTTTTAGATAATTAGACACA+AGG | - | chr1.1:30182075-30182094 | None:intergenic | 20.0% |
| ! | AAACACACATAAAATCCAAA+AGG | - | chr1.1:30178664-30178683 | None:intergenic | 25.0% |
| ! | AAATGGAGAGAAAAGAAAAT+AGG | - | chr1.1:30182449-30182468 | None:intergenic | 25.0% |
| ! | AACACACATAAAATCCAAAA+GGG | - | chr1.1:30178663-30178682 | None:intergenic | 25.0% |
| ! | AAGTGCATTATATAATTGTG+TGG | + | chr1.1:30181406-30181425 | MS.gene53674:intron | 25.0% |
| ! | AATATAATAGGGCTATTGAA+TGG | + | chr1.1:30181815-30181834 | MS.gene53674:intron | 25.0% |
| ! | AATTCAATATACCCTTATAG+TGG | - | chr1.1:30180589-30180608 | None:intergenic | 25.0% |
| ! | AGAAATAAAACCTTCAAAAC+AGG | - | chr1.1:30179588-30179607 | None:intergenic | 25.0% |
| ! | AGAGCAGTAAGAAATAAAAT+TGG | - | chr1.1:30181314-30181333 | None:intergenic | 25.0% |
| ! | AGTAATGGTAGGAAATAAAA+TGG | - | chr1.1:30182466-30182485 | None:intergenic | 25.0% |
| ! | CACAATTATATAATGCACTT+TGG | - | chr1.1:30181406-30181425 | None:intergenic | 25.0% |
| ! | CACTGTATGTCTTATAAATA+AGG | + | chr1.1:30181041-30181060 | MS.gene53674:intron | 25.0% |
| ! | CGTAGAAAATATCATATTTG+TGG | + | chr1.1:30181519-30181538 | MS.gene53674:intron | 25.0% |
| ! | CTATTGATATTTCATCTTCT+TGG | + | chr1.1:30182246-30182265 | MS.gene53674:intron | 25.0% |
| ! | CTTAAAATAATACCTCTAAC+GGG | + | chr1.1:30180228-30180247 | MS.gene53674:intron | 25.0% |
| ! | GAAAAAAGGAACATAACATA+AGG | - | chr1.1:30182748-30182767 | None:intergenic | 25.0% |
| ! | TAGATATAGGAAAGTTAATC+TGG | - | chr1.1:30181236-30181255 | None:intergenic | 25.0% |
| ! | TATCACATTAACACTTTGTT+TGG | - | chr1.1:30182006-30182025 | None:intergenic | 25.0% |
| ! | TCACAAAAGATCAATGTTAA+TGG | + | chr1.1:30182864-30182883 | MS.gene53674:CDS | 25.0% |
| ! | TGAAATAATTAATCTGGCAA+AGG | - | chr1.1:30180185-30180204 | None:intergenic | 25.0% |
| ! | TGGTAACTTTCAAAACAAAA+AGG | - | chr1.1:30183025-30183044 | None:intergenic | 25.0% |
| ! | TTATATCATGTTAAAGAGCA+GGG | - | chr1.1:30181083-30181102 | None:intergenic | 25.0% |
| ! | TTGAAATGCATATATGTATG+TGG | - | chr1.1:30183317-30183336 | None:intergenic | 25.0% |
| ! | TTGCTGATAATATTGTTGAT+AGG | + | chr1.1:30180472-30180491 | MS.gene53674:intron | 25.0% |
| ! | TTTATATCATGTTAAAGAGC+AGG | - | chr1.1:30181084-30181103 | None:intergenic | 25.0% |
| ! | TTTGACAAATATCAAATCAG+TGG | + | chr1.1:30181146-30181165 | MS.gene53674:intron | 25.0% |
| ! | TTTGTTTGGTATACTTGAAA+AGG | - | chr1.1:30181992-30182011 | None:intergenic | 25.0% |
| !! | AACTTGAATTGATTCAACAT+AGG | - | chr1.1:30181266-30181285 | None:intergenic | 25.0% |
| !! | GTATATTGAATTTTCCTTTC+AGG | + | chr1.1:30180597-30180616 | MS.gene53674:intron | 25.0% |
| !! | TTACATATTGTTTGGAACTT+TGG | - | chr1.1:30182420-30182439 | None:intergenic | 25.0% |
| !! | TTATTTGTTGGTTGTAATGT+AGG | + | chr1.1:30182584-30182603 | MS.gene53674:intron | 25.0% |
| !! | TTGTTGGAATATGAATTTTC+AGG | + | chr1.1:30179106-30179125 | MS.gene53674:intron | 25.0% |
| !! | TTTCTTCATCTTTTTCTGTT+TGG | + | chr1.1:30178576-30178595 | MS.gene53674:intron | 25.0% |
| !!! | GCTTTGAATTAAACTTGTTA+TGG | + | chr1.1:30179239-30179258 | MS.gene53674:intron | 25.0% |
| !!! | TATTTTTACTTTGTTGTGAC+AGG | + | chr1.1:30180265-30180284 | MS.gene53674:intron | 25.0% |
| !!! | TTGAATTAAACTTGTTATGG+TGG | + | chr1.1:30179242-30179261 | MS.gene53674:intron | 25.0% |
| !!! | TTGTTTTATTTTTGGGATGT+AGG | + | chr1.1:30183338-30183357 | MS.gene53674:intron | 25.0% |
| AACAAAACTGTAATGTGCTT+TGG | + | chr1.1:30183215-30183234 | MS.gene53674:intron | 30.0% | |
| AAGATTCAACAACAAGTGTT+TGG | - | chr1.1:30182497-30182516 | None:intergenic | 30.0% | |
| ACAAATTATCTAGACATACC+AGG | - | chr1.1:30179824-30179843 | None:intergenic | 30.0% | |
| ACATATTCAAACCAAAGCAA+AGG | - | chr1.1:30179153-30179172 | None:intergenic | 30.0% | |
| ACATGGATATTACTCCATAT+CGG | - | chr1.1:30183418-30183437 | None:intergenic | 30.0% | |
| AGTATCAAATGCCACAATAA+AGG | - | chr1.1:30181467-30181486 | None:intergenic | 30.0% | |
| ATCTGACGAACATTATTTGT+TGG | + | chr1.1:30182572-30182591 | MS.gene53674:intron | 30.0% | |
| ATTTGCCAATTTCCACTATA+AGG | + | chr1.1:30180574-30180593 | MS.gene53674:intron | 30.0% | |
| CAAAAGATCAATGTTAATGG+AGG | + | chr1.1:30182867-30182886 | MS.gene53674:CDS | 30.0% | |
| CAAATCAAATAAGCAATGAG+AGG | + | chr1.1:30182348-30182367 | MS.gene53674:intron | 30.0% | |
| CAATATATCGTTTCGATTCT+CGG | + | chr1.1:30178835-30178854 | MS.gene53674:intron | 30.0% | |
| CATAGGAAGGAAATAGATAT+AGG | - | chr1.1:30181249-30181268 | None:intergenic | 30.0% | |
| CATATTCAAACCAAAGCAAA+GGG | - | chr1.1:30179152-30179171 | None:intergenic | 30.0% | |
| CTTAAGGAAGACAAAAACTT+CGG | - | chr1.1:30182171-30182190 | None:intergenic | 30.0% | |
| GAAAAACGGAAAATTACTCT+AGG | - | chr1.1:30180150-30180169 | None:intergenic | 30.0% | |
| GACTTCTATTCAATAGATTG+TGG | + | chr1.1:30180637-30180656 | MS.gene53674:intron | 30.0% | |
| GGAGATAAAGTTAGGAAAAA+CGG | - | chr1.1:30180164-30180183 | None:intergenic | 30.0% | |
| GGTACCAATTCAAAAAGATA+AGG | - | chr1.1:30178983-30179002 | None:intergenic | 30.0% | |
| GTATCAAATGCCACAATAAA+GGG | - | chr1.1:30181466-30181485 | None:intergenic | 30.0% | |
| GTTTATTGTAAATTGTGAGC+AGG | + | chr1.1:30183518-30183537 | MS.gene53674:intron | 30.0% | |
| TATCAAATGCCACAATAAAG+GGG | - | chr1.1:30181465-30181484 | None:intergenic | 30.0% | |
| TCAAATGTCGAAACTATGTT+TGG | + | chr1.1:30181572-30181591 | MS.gene53674:intron | 30.0% | |
| TCATTGGATGAAAAAGAAGA+AGG | - | chr1.1:30178525-30178544 | None:intergenic | 30.0% | |
| TCGGTTAATAAATATCGTCA+CGG | - | chr1.1:30181008-30181027 | None:intergenic | 30.0% | |
| TTAACAGACAATGTTCATCT+GGG | + | chr1.1:30179923-30179942 | MS.gene53674:CDS | 30.0% | |
| TTATAGAACCAACACAAATC+AGG | - | chr1.1:30179046-30179065 | None:intergenic | 30.0% | |
| TTATATAATGCACTTTGGGT+TGG | - | chr1.1:30181401-30181420 | None:intergenic | 30.0% | |
| TTGGTATACTTGAAAAGGTA+TGG | - | chr1.1:30181987-30182006 | None:intergenic | 30.0% | |
| TTTGCCAATTTCCACTATAA+GGG | + | chr1.1:30180575-30180594 | MS.gene53674:intron | 30.0% | |
| ! | AAGTTTTTGTCTTCCTTAAG+TGG | + | chr1.1:30182171-30182190 | MS.gene53674:intron | 30.0% |
| ! | GGATTTTATGACATTGGTAA+AGG | + | chr1.1:30179985-30180004 | MS.gene53674:intron | 30.0% |
| ! | TACTTTTCGGTTGTTACAAA+TGG | + | chr1.1:30181917-30181936 | MS.gene53674:intron | 30.0% |
| ! | TATACCCTTATAGTGGAAAT+TGG | - | chr1.1:30180582-30180601 | None:intergenic | 30.0% |
| ! | TATATAATGCACTTTGGGTT+GGG | - | chr1.1:30181400-30181419 | None:intergenic | 30.0% |
| ! | TGAATTGATTCAACATAGGA+AGG | - | chr1.1:30181262-30181281 | None:intergenic | 30.0% |
| ! | TGATTTGATGTCTGTGTTTT+AGG | + | chr1.1:30180856-30180875 | MS.gene53674:intron | 30.0% |
| !! | AAATACAAGTTGTTGACTTG+TGG | - | chr1.1:30182935-30182954 | None:intergenic | 30.0% |
| !! | ATGTGATGTCTTTTTCACTT+CGG | - | chr1.1:30182295-30182314 | None:intergenic | 30.0% |
| !! | GAATATGAATTTTCAGGAGA+GGG | + | chr1.1:30179112-30179131 | MS.gene53674:intron | 30.0% |
| !! | GAATTTTCCTTTCAGGTATT+AGG | + | chr1.1:30180604-30180623 | MS.gene53674:intron | 30.0% |
| !! | GGTGGATTTTACATATTGTT+TGG | - | chr1.1:30182428-30182447 | None:intergenic | 30.0% |
| !! | GTTTTGATCTTGAATCTGTT+TGG | + | chr1.1:30178724-30178743 | MS.gene53674:intron | 30.0% |
| !! | TGTGTTTCTGTTTTCTTGAT+TGG | + | chr1.1:30178677-30178696 | MS.gene53674:intron | 30.0% |
| !! | TGTTGGTTCCACAAAAATAA+AGG | + | chr1.1:30178913-30178932 | MS.gene53674:intron | 30.0% |
| !!! | TTCTTGATTGGTTTTTAGCT+TGG | + | chr1.1:30178689-30178708 | MS.gene53674:intron | 30.0% |
| AAAGCTGTGTTCAAGAAAGA+CGG | + | chr1.1:30180749-30180768 | MS.gene53674:CDS | 35.0% | |
| AACGTGAACTAAAGCAGTAA+AGG | - | chr1.1:30179622-30179641 | None:intergenic | 35.0% | |
| AATCATTCCAGTTTCAACCA+AGG | + | chr1.1:30180550-30180569 | MS.gene53674:CDS | 35.0% | |
| AATTCCATCATCAACGGAAA+TGG | - | chr1.1:30180693-30180712 | None:intergenic | 35.0% | |
| ACAATATCTCCAACTTCACT+TGG | - | chr1.1:30179728-30179747 | None:intergenic | 35.0% | |
| ACCACAATCAAAAGAATGCA+AGG | - | chr1.1:30181495-30181514 | None:intergenic | 35.0% | |
| AGATGTGGAAGATGAATCAT+TGG | - | chr1.1:30178541-30178560 | None:intergenic | 35.0% | |
| ATCAGAACCTAATACCTGAA+AGG | - | chr1.1:30180614-30180633 | None:intergenic | 35.0% | |
| ATCCATGACAACTAATCCAA+TGG | + | chr1.1:30180104-30180123 | MS.gene53674:CDS | 35.0% | |
| CAATATCTCCAACTTCACTT+GGG | - | chr1.1:30179727-30179746 | None:intergenic | 35.0% | |
| CATCATCACGTTCATGTAAA+TGG | - | chr1.1:30179664-30179683 | None:intergenic | 35.0% | |
| CATCTCATTGCAGAATTGTA+TGG | + | chr1.1:30182533-30182552 | MS.gene53674:intron | 35.0% | |
| CCACAATCAAAAGAATGCAA+GGG | - | chr1.1:30181494-30181513 | None:intergenic | 35.0% | |
| GAAGTTGGAGATATTGTTGT+CGG | + | chr1.1:30179731-30179750 | MS.gene53674:CDS | 35.0% | |
| GATGAGTAAAAGTGAAAGAG+TGG | - | chr1.1:30182227-30182246 | None:intergenic | 35.0% | |
| GATGCAAGTATTTATCTTCG+AGG | + | chr1.1:30181344-30181363 | MS.gene53674:intron | 35.0% | |
| GGTGTATTCAGGTACTTAAT+TGG | + | chr1.1:30180964-30180983 | MS.gene53674:intron | 35.0% | |
| GTTAACAGACAATGTTCATC+TGG | + | chr1.1:30179922-30179941 | MS.gene53674:CDS | 35.0% | |
| TACCTGAATACACCAAGAAT+GGG | - | chr1.1:30180958-30180977 | None:intergenic | 35.0% | |
| TATAAATAAGGAAAGCCCAG+TGG | + | chr1.1:30181053-30181072 | MS.gene53674:intron | 35.0% | |
| TATGTGTTTGCAGTGCATAT+CGG | + | chr1.1:30179499-30179518 | MS.gene53674:intron | 35.0% | |
| TCTATTGAGTAGAAAGTGAG+AGG | + | chr1.1:30181721-30181740 | MS.gene53674:intron | 35.0% | |
| TCTTTGTCTGATGAATGAGA+TGG | + | chr1.1:30178878-30178897 | MS.gene53674:intron | 35.0% | |
| TGGAGAGAAAAGAAAATAGG+TGG | - | chr1.1:30182446-30182465 | None:intergenic | 35.0% | |
| TTATGATCTTATACCAGCAG+TGG | - | chr1.1:30180780-30180799 | None:intergenic | 35.0% | |
| ! | AATCATGACCTGATTTGTGT+TGG | + | chr1.1:30179035-30179054 | MS.gene53674:intron | 35.0% |
| ! | ACAGTGTGCCAATTTGAAAT+CGG | - | chr1.1:30181027-30181046 | None:intergenic | 35.0% |
| ! | ATCTTTTTGAATTGGTACCG+AGG | + | chr1.1:30178984-30179003 | MS.gene53674:intron | 35.0% |
| ! | ATTTCTCCTCACCAGTTTTT+GGG | - | chr1.1:30180664-30180683 | None:intergenic | 35.0% |
| ! | CAAAAACTTCGGTGTGAAAA+TGG | - | chr1.1:30182160-30182179 | None:intergenic | 35.0% |
| ! | GTCGAAACTATGTTTGGTTT+AGG | + | chr1.1:30181578-30181597 | MS.gene53674:intron | 35.0% |
| ! | TATATGTGTATTGGTGTGTG+TGG | + | chr1.1:30183470-30183489 | MS.gene53674:intron | 35.0% |
| ! | TGATGATGAGGTTTCATTGT+AGG | + | chr1.1:30179676-30179695 | MS.gene53674:intron | 35.0% |
| ! | TGTAACAACCGAAAAGTATG+TGG | - | chr1.1:30181915-30181934 | None:intergenic | 35.0% |
| ! | TGTTGCACATTTGATTTCAC+AGG | + | chr1.1:30179278-30179297 | MS.gene53674:intron | 35.0% |
| ! | TGTTTGGAACTTTGGACTTT+AGG | - | chr1.1:30182412-30182431 | None:intergenic | 35.0% |
| ! | TTTACATGAACGTGATGATG+AGG | + | chr1.1:30179664-30179683 | MS.gene53674:intron | 35.0% |
| ! | TTTTCGGTTGTTACAAATGG+TGG | + | chr1.1:30181920-30181939 | MS.gene53674:intron | 35.0% |
| !! | AAGAAGTATCGCAATGCAAA+AGG | + | chr1.1:30180927-30180946 | MS.gene53674:CDS | 35.0% |
| !! | AATCAAGTCCTAGCTTGTTA+CGG | - | chr1.1:30182845-30182864 | None:intergenic | 35.0% |
| !! | AGAAGTATCGCAATGCAAAA+GGG | + | chr1.1:30180928-30180947 | MS.gene53674:CDS | 35.0% |
| !! | ATTGTTGTCGGTTCTGTATT+GGG | + | chr1.1:30179743-30179762 | MS.gene53674:CDS | 35.0% |
| !! | GGAATATGAATTTTCAGGAG+AGG | + | chr1.1:30179111-30179130 | MS.gene53674:intron | 35.0% |
| !! | GTGATATTTGATGACCCTTT+TGG | + | chr1.1:30178646-30178665 | MS.gene53674:intron | 35.0% |
| !! | TATTGTTGTCGGTTCTGTAT+TGG | + | chr1.1:30179742-30179761 | MS.gene53674:CDS | 35.0% |
| !! | TGTTTTAGGTAATTCTAGCC+AGG | + | chr1.1:30180870-30180889 | MS.gene53674:intron | 35.0% |
| !! | TTGCATTCTTTTGATTGTGG+TGG | + | chr1.1:30181494-30181513 | MS.gene53674:intron | 35.0% |
| !! | TTGCTGTTCCACATACTTTT+CGG | + | chr1.1:30181904-30181923 | MS.gene53674:intron | 35.0% |
| !!! | TTTTGTTTAGGTATTGGTGC+CGG | + | chr1.1:30180075-30180094 | MS.gene53674:intron | 35.0% |
| AACAACAAGTGTTTGGATGC+AGG | - | chr1.1:30182490-30182509 | None:intergenic | 40.0% | |
| AACTTCACTTGGGTTCAAGT+TGG | - | chr1.1:30179717-30179736 | None:intergenic | 40.0% | |
| AACTTGAACCCAAGTGAAGT+TGG | + | chr1.1:30179716-30179735 | MS.gene53674:CDS | 40.0% | |
| AAGAGCTAGTGAATGTCGTA+TGG | + | chr1.1:30179778-30179797 | MS.gene53674:CDS | 40.0% | |
| AAGTATGTGGAACAGCAAAG+TGG | - | chr1.1:30181902-30181921 | None:intergenic | 40.0% | |
| AATACCTCTAACGGGATACA+AGG | + | chr1.1:30180236-30180255 | MS.gene53674:intron | 40.0% | |
| AATGCATCATTAGCTGACCT+AGG | + | chr1.1:30180719-30180738 | MS.gene53674:CDS | 40.0% | |
| ACAACAAGTGTTTGGATGCA+GGG | - | chr1.1:30182489-30182508 | None:intergenic | 40.0% | |
| AGGTCAGCTAATGATGCATT+GGG | - | chr1.1:30180719-30180738 | None:intergenic | 40.0% | |
| AGTTGTCATGGATTCCAAAC+CGG | - | chr1.1:30180097-30180116 | None:intergenic | 40.0% | |
| ATAACGAGCTTCTACTTTCG+AGG | + | chr1.1:30179010-30179029 | MS.gene53674:intron | 40.0% | |
| CAATAAAATCGTCTCCCTGA+TGG | - | chr1.1:30181866-30181885 | None:intergenic | 40.0% | |
| CCATCTTATCTCTCCACTTA+AGG | - | chr1.1:30182187-30182206 | None:intergenic | 40.0% | |
| CCTTAAGTGGAGAGATAAGA+TGG | + | chr1.1:30182184-30182203 | MS.gene53674:intron | 40.0% | |
| CTCTCTGCGTATATGTGTAT+TGG | + | chr1.1:30183461-30183480 | MS.gene53674:intron | 40.0% | |
| CTGAATCTGATCGATGATTC+TGG | + | chr1.1:30179848-30179867 | MS.gene53674:intron | 40.0% | |
| CTGGCAAAGGAGATAAAGTT+AGG | - | chr1.1:30180172-30180191 | None:intergenic | 40.0% | |
| GAAAATGTTGCCAATCGCTT+TGG | + | chr1.1:30180341-30180360 | MS.gene53674:CDS | 40.0% | |
| GAAACAAACATCGAGAGATG+TGG | - | chr1.1:30178556-30178575 | None:intergenic | 40.0% | |
| GAATGAGATGGTGACTTGAT+CGG | + | chr1.1:30178890-30178909 | MS.gene53674:intron | 40.0% | |
| GACAACTAATCCAATGGCAT+GGG | + | chr1.1:30180110-30180129 | MS.gene53674:CDS | 40.0% | |
| GAGCATCCTTGGATAAGAAA+AGG | - | chr1.1:30183622-30183641 | None:intergenic | 40.0% | |
| GATCTATCTCGCAAACACAT+TGG | - | chr1.1:30183045-30183064 | None:intergenic | 40.0% | |
| GCAAATACCTTGGTTGAAAC+TGG | - | chr1.1:30180560-30180579 | None:intergenic | 40.0% | |
| GGAGTAATATCCATGTGCAT+TGG | + | chr1.1:30183422-30183441 | MS.gene53674:CDS | 40.0% | |
| GTACCTGAATACACCAAGAA+TGG | - | chr1.1:30180959-30180978 | None:intergenic | 40.0% | |
| GTATATTGCCGTAACAAGCT+AGG | + | chr1.1:30182834-30182853 | MS.gene53674:CDS | 40.0% | |
| GTGGAAATTGGCAAATACCT+TGG | - | chr1.1:30180570-30180589 | None:intergenic | 40.0% | |
| TAGAAGCTCGTTATTCTCCT+CGG | - | chr1.1:30179004-30179023 | None:intergenic | 40.0% | |
| TAGATTGTGGACCCAAAAAC+TGG | + | chr1.1:30180650-30180669 | MS.gene53674:intron | 40.0% | |
| TAGGTCAGCTAATGATGCAT+TGG | - | chr1.1:30180720-30180739 | None:intergenic | 40.0% | |
| TATATACCTGTTGCTCCCAA+AGG | - | chr1.1:30182912-30182931 | None:intergenic | 40.0% | |
| TGACAACTAATCCAATGGCA+TGG | + | chr1.1:30180109-30180128 | MS.gene53674:CDS | 40.0% | |
| TGATGTAGCTGCTGCTATAA+GGG | + | chr1.1:30179960-30179979 | MS.gene53674:CDS | 40.0% | |
| TGTAAATTGTGAGCAGGTAC+TGG | + | chr1.1:30183524-30183543 | MS.gene53674:intron | 40.0% | |
| TGTCTGTTAACTGTCCTAAC+CGG | - | chr1.1:30179913-30179932 | None:intergenic | 40.0% | |
| TTGGAACTTTGGACTTTAGG+TGG | - | chr1.1:30182409-30182428 | None:intergenic | 40.0% | |
| ! | ACTCATCACGCTTGTCTTTT+AGG | + | chr1.1:30182119-30182138 | MS.gene53674:intron | 40.0% |
| ! | AGGGAGACGATTTTATTGGT+GGG | + | chr1.1:30181868-30181887 | MS.gene53674:intron | 40.0% |
| ! | AGGGCTGGATTTTATGACAT+TGG | + | chr1.1:30179979-30179998 | MS.gene53674:CDS | 40.0% |
| ! | CAATGTTAATGGAGGTGCAA+TGG | + | chr1.1:30182875-30182894 | MS.gene53674:CDS | 40.0% |
| ! | CATCAGGGAGACGATTTTAT+TGG | + | chr1.1:30181864-30181883 | MS.gene53674:intron | 40.0% |
| ! | GATTTCTCCTCACCAGTTTT+TGG | - | chr1.1:30180665-30180684 | None:intergenic | 40.0% |
| ! | GGACAACCTTTTCTTATCCA+AGG | + | chr1.1:30183613-30183632 | MS.gene53674:CDS | 40.0% |
| ! | TACCCATTCTTGGTGTATTC+AGG | + | chr1.1:30180953-30180972 | MS.gene53674:CDS | 40.0% |
| ! | TATGTGCTATTGCGCTCAAT+TGG | - | chr1.1:30181376-30181395 | None:intergenic | 40.0% |
| ! | TTTTCAGAGGTAATCCCCAT+TGG | - | chr1.1:30180326-30180345 | None:intergenic | 40.0% |
| !! | ACACAGCTTTAAGCTTTCCT+AGG | - | chr1.1:30180739-30180758 | None:intergenic | 40.0% |
| !! | CACGCTTGTCTTTTAGGAAA+TGG | + | chr1.1:30182125-30182144 | MS.gene53674:intron | 40.0% |
| !! | CCCTTGCATTCTTTTGATTG+TGG | + | chr1.1:30181491-30181510 | MS.gene53674:intron | 40.0% |
| !! | GAAGTATCGCAATGCAAAAG+GGG | + | chr1.1:30180929-30180948 | MS.gene53674:CDS | 40.0% |
| !! | TGCCATTGGATTAGTTGTCA+TGG | - | chr1.1:30180109-30180128 | None:intergenic | 40.0% |
| !!! | GCATTTTATGCTGGTTTTCC+TGG | + | chr1.1:30179803-30179822 | MS.gene53674:CDS | 40.0% |
| AAAACTGCCTCCTTCCAATG+GGG | + | chr1.1:30180309-30180328 | MS.gene53674:CDS | 45.0% | |
| AAACCTTCAAAACAGGAGCC+AGG | - | chr1.1:30179581-30179600 | None:intergenic | 45.0% | |
| AATGGCAATTGGGCATCCTT+TGG | + | chr1.1:30182893-30182912 | MS.gene53674:CDS | 45.0% | |
| AATTCTAGCCAGGTGAGTGA+TGG | + | chr1.1:30180880-30180899 | MS.gene53674:CDS | 45.0% | |
| ACTAATCCAATGGCATGGGA+TGG | + | chr1.1:30180114-30180133 | MS.gene53674:CDS | 45.0% | |
| AGAAAAGGTTGTCCCCTTTG+CGG | - | chr1.1:30183607-30183626 | None:intergenic | 45.0% | |
| AGTGAGTGTACCAATGCACA+TGG | - | chr1.1:30183435-30183454 | None:intergenic | 45.0% | |
| ATCACAGGACAGCTGCATTT+GGG | + | chr1.1:30179334-30179353 | MS.gene53674:CDS | 45.0% | |
| ATGGCAATTGGGCATCCTTT+GGG | + | chr1.1:30182894-30182913 | MS.gene53674:CDS | 45.0% | |
| CAAAACTGCCTCCTTCCAAT+GGG | + | chr1.1:30180308-30180327 | MS.gene53674:CDS | 45.0% | |
| CAACATGACACTGAGACATG+TGG | - | chr1.1:30183105-30183124 | None:intergenic | 45.0% | |
| CCTTGAAACTCCAAAGCGAT+TGG | - | chr1.1:30180354-30180373 | None:intergenic | 45.0% | |
| CTGATGTAGCTGCTGCTATA+AGG | + | chr1.1:30179959-30179978 | MS.gene53674:CDS | 45.0% | |
| CTTTGCAAAGCTAAACGTGG+TGG | + | chr1.1:30179528-30179547 | MS.gene53674:CDS | 45.0% | |
| GCTCTTTGCAAAGCTAAACG+TGG | + | chr1.1:30179525-30179544 | MS.gene53674:CDS | 45.0% | |
| GGGTCGAATTCCATCATCAA+CGG | - | chr1.1:30180699-30180718 | None:intergenic | 45.0% | |
| TATCACAGGACAGCTGCATT+TGG | + | chr1.1:30179333-30179352 | MS.gene53674:CDS | 45.0% | |
| TGATCTTATACCAGCAGTGG+TGG | - | chr1.1:30180777-30180796 | None:intergenic | 45.0% | |
| TGCAATTCCAGTTGCTGTGA+AGG | + | chr1.1:30182660-30182679 | MS.gene53674:CDS | 45.0% | |
| TGTCCAGACACACCTTCAAA+CGG | + | chr1.1:30183126-30183145 | MS.gene53674:intron | 45.0% | |
| TGTTTGGATGCAGGGAGTAA+TGG | - | chr1.1:30182481-30182500 | None:intergenic | 45.0% | |
| TTCACAGGCTTCAGCATGTT+TGG | + | chr1.1:30179293-30179312 | MS.gene53674:intron | 45.0% | |
| TTCTGTCTGACCCTTTGCTT+TGG | + | chr1.1:30179139-30179158 | MS.gene53674:intron | 45.0% | |
| TTGCATGAAATGAAGCGACG+TGG | + | chr1.1:30183383-30183402 | MS.gene53674:CDS | 45.0% | |
| ! | AATGGAGGTGCAATGGCAAT+TGG | + | chr1.1:30182882-30182901 | MS.gene53674:CDS | 45.0% |
| ! | ACACCTTCAAACGGAAGTGT+TGG | + | chr1.1:30183135-30183154 | MS.gene53674:intron | 45.0% |
| ! | ATGGAGGTGCAATGGCAATT+GGG | + | chr1.1:30182883-30182902 | MS.gene53674:CDS | 45.0% |
| ! | CAGGGAGACGATTTTATTGG+TGG | + | chr1.1:30181867-30181886 | MS.gene53674:intron | 45.0% |
| ! | CATTGGAAGGAGGCAGTTTT+GGG | - | chr1.1:30180309-30180328 | None:intergenic | 45.0% |
| ! | CGTATGGCTGCATTTTATGC+TGG | + | chr1.1:30179794-30179813 | MS.gene53674:CDS | 45.0% |
| ! | GCGATTGGCAACATTTTCAG+AGG | - | chr1.1:30180339-30180358 | None:intergenic | 45.0% |
| ! | GTCACCATTTCCGTTGATGA+TGG | + | chr1.1:30180686-30180705 | MS.gene53674:CDS | 45.0% |
| ! | GTTGATAGGTTGAGTCTCAC+AGG | + | chr1.1:30180486-30180505 | MS.gene53674:intron | 45.0% |
| !! | ATTGTGAGCAGGTACTGGAA+TGG | + | chr1.1:30183529-30183548 | MS.gene53674:intron | 45.0% |
| !! | CCAATCGCTTTGGAGTTTCA+AGG | + | chr1.1:30180351-30180370 | MS.gene53674:CDS | 45.0% |
| !! | TATCCTGGCTCCTGTTTTGA+AGG | + | chr1.1:30179575-30179594 | MS.gene53674:CDS | 45.0% |
| !! | TTCCTGCTTTTCGTCCATCA+GGG | + | chr1.1:30181849-30181868 | MS.gene53674:intron | 45.0% |
| !! | TTGTGAGCAGGTACTGGAAT+GGG | + | chr1.1:30183530-30183549 | MS.gene53674:intron | 45.0% |
| !! | TTTAGGTATTGGTGCCGGTT+TGG | + | chr1.1:30180080-30180099 | MS.gene53674:intron | 45.0% |
| AAAGAGCAGGGCAATCCACT+GGG | - | chr1.1:30181071-30181090 | None:intergenic | 50.0% | |
| ACAGGAGCCAGGATATCATC+AGG | - | chr1.1:30179570-30179589 | None:intergenic | 50.0% | |
| ACAGGCTTCAGCATGTTTGG+CGG | + | chr1.1:30179296-30179315 | MS.gene53674:intron | 50.0% | |
| ACGACCTTGTATCCCGTTAG+AGG | - | chr1.1:30180243-30180262 | None:intergenic | 50.0% | |
| ACTGATCCATCCCATGCCAT+TGG | - | chr1.1:30180123-30180142 | None:intergenic | 50.0% | |
| AGCTTTGCAATGCCCGCAAA+GGG | + | chr1.1:30183591-30183610 | MS.gene53674:CDS | 50.0% | |
| AGGTAATCCCCATTGGAAGG+AGG | - | chr1.1:30180319-30180338 | None:intergenic | 50.0% | |
| CAAAAGGGGCTACCCATTCT+TGG | + | chr1.1:30180943-30180962 | MS.gene53674:CDS | 50.0% | |
| CAACTGGAATTGCAGCAGCT+GGG | - | chr1.1:30182654-30182673 | None:intergenic | 50.0% | |
| CACTCACCCTGATGATATCC+TGG | + | chr1.1:30179560-30179579 | MS.gene53674:CDS | 50.0% | |
| CAGAGGTAATCCCCATTGGA+AGG | - | chr1.1:30180322-30180341 | None:intergenic | 50.0% | |
| CAGGAGCCAGGATATCATCA+GGG | - | chr1.1:30179569-30179588 | None:intergenic | 50.0% | |
| CCAAAACTGCCTCCTTCCAA+TGG | + | chr1.1:30180307-30180326 | MS.gene53674:CDS | 50.0% | |
| GAAAAGGTTGTCCCCTTTGC+GGG | - | chr1.1:30183606-30183625 | None:intergenic | 50.0% | |
| GATGGTGACTTGATCGGTGT+TGG | + | chr1.1:30178896-30178915 | MS.gene53674:intron | 50.0% | |
| GCACCAACACTTCCGTTTGA+AGG | - | chr1.1:30183141-30183160 | None:intergenic | 50.0% | |
| GTCGCAGTACCCCTTTATTG+TGG | + | chr1.1:30181453-30181472 | MS.gene53674:intron | 50.0% | |
| TAAAGAGCAGGGCAATCCAC+TGG | - | chr1.1:30181072-30181091 | None:intergenic | 50.0% | |
| TCACAGGACAGCTGCATTTG+GGG | + | chr1.1:30179335-30179354 | MS.gene53674:CDS | 50.0% | |
| TGAAATGAAGCGACGTGGCA+AGG | + | chr1.1:30183388-30183407 | MS.gene53674:CDS | 50.0% | |
| TGCGACACAGTGCAGAAAAC+AGG | - | chr1.1:30181439-30181458 | None:intergenic | 50.0% | |
| TGGATGCAGGGAGTAATGGT+AGG | - | chr1.1:30182477-30182496 | None:intergenic | 50.0% | |
| TGTAGGAGTTTCGTCGCAGT+TGG | + | chr1.1:30182601-30182620 | MS.gene53674:intron | 50.0% | |
| TGTGGACCCAAAAACTGGTG+AGG | + | chr1.1:30180655-30180674 | MS.gene53674:CDS | 50.0% | |
| TTTCCATCCAGAGACTGTGC+CGG | + | chr1.1:30179891-30179910 | MS.gene53674:intron | 50.0% | |
| ! | CCATTGGAAGGAGGCAGTTT+TGG | - | chr1.1:30180310-30180329 | None:intergenic | 50.0% |
| ! | CTGATGGACGAAAAGCAGGA+AGG | - | chr1.1:30181850-30181869 | None:intergenic | 50.0% |
| ! | CTTCCGTTTGAAGGTGTGTC+TGG | - | chr1.1:30183132-30183151 | None:intergenic | 50.0% |
| !! | CTTCCTGCTTTTCGTCCATC+AGG | + | chr1.1:30181848-30181867 | MS.gene53674:intron | 50.0% |
| !! | GAGACAGTGCTGCTTATCAC+AGG | + | chr1.1:30179319-30179338 | MS.gene53674:CDS | 50.0% |
| !! | GCAGCTGCAGTTTTTGAGAG+AGG | + | chr1.1:30183554-30183573 | MS.gene53674:CDS | 50.0% |
| !! | GGTGTTGATCCTGCCATCAT+GGG | + | chr1.1:30182622-30182641 | MS.gene53674:CDS | 50.0% |
| !! | TGGTGTTGATCCTGCCATCA+TGG | + | chr1.1:30182621-30182640 | MS.gene53674:CDS | 50.0% |
| !! | TGTGAGCAGGTACTGGAATG+GGG | + | chr1.1:30183531-30183550 | MS.gene53674:intron | 50.0% |
| AAAGACGGAACCACCACTGC+TGG | + | chr1.1:30180764-30180783 | MS.gene53674:CDS | 55.0% | |
| AGCTGCATTTGGGGACGATG+TGG | + | chr1.1:30179344-30179363 | MS.gene53674:CDS | 55.0% | |
| CAGGCTTCAGCATGTTTGGC+GGG | + | chr1.1:30179297-30179316 | MS.gene53674:intron | 55.0% | |
| GAGCTTTGCAATGCCCGCAA+AGG | + | chr1.1:30183590-30183609 | MS.gene53674:CDS | 55.0% | |
| GATCCTGCCATCATGGGTGT+TGG | + | chr1.1:30182628-30182647 | MS.gene53674:CDS | 55.0% | |
| GCAACTGGAATTGCAGCAGC+TGG | - | chr1.1:30182655-30182674 | None:intergenic | 55.0% | |
| GCTTTGCAATGCCCGCAAAG+GGG | + | chr1.1:30183592-30183611 | MS.gene53674:CDS | 55.0% | |
| GTAGCTGCTGCTATAAGGGC+TGG | + | chr1.1:30179964-30179983 | MS.gene53674:CDS | 55.0% | |
| TAACCGGCACAGTCTCTGGA+TGG | - | chr1.1:30179897-30179916 | None:intergenic | 55.0% | |
| ! | CTCCCTGATGGACGAAAAGC+AGG | - | chr1.1:30181854-30181873 | None:intergenic | 55.0% |
| ! | GTCGGTTCTGTATTGGGAGC+TGG | + | chr1.1:30179749-30179768 | MS.gene53674:CDS | 55.0% |
| !! | ATCCAGAGACTGTGCCGGTT+AGG | + | chr1.1:30179896-30179915 | MS.gene53674:intron | 55.0% |
| !! | GTGAGCAGGTACTGGAATGG+GGG | + | chr1.1:30183532-30183551 | MS.gene53674:intron | 55.0% |
| AGCTGGGCCAACACCCATGA+TGG | - | chr1.1:30182638-30182657 | None:intergenic | 60.0% | |
| CCAGTTGCTGTGAAGGCTGC+AGG | + | chr1.1:30182667-30182686 | MS.gene53674:CDS | 60.0% | |
| CCTGCAGCCTTCACAGCAAC+TGG | - | chr1.1:30182670-30182689 | None:intergenic | 60.0% | |
| CGTGGCAAGGACTGCCGATA+TGG | + | chr1.1:30183401-30183420 | MS.gene53674:CDS | 60.0% | |
| CTCCAGCACCATCACTCACC+TGG | - | chr1.1:30180891-30180910 | None:intergenic | 60.0% | |
| GGTTGAGTCTCACAGGCGAG+CGG | + | chr1.1:30180493-30180512 | MS.gene53674:intron | 60.0% | |
| GTCCTAACCGGCACAGTCTC+TGG | - | chr1.1:30179901-30179920 | None:intergenic | 60.0% | |
| ! | AGCCAGGTGAGTGATGGTGC+TGG | + | chr1.1:30180886-30180905 | MS.gene53674:CDS | 60.0% |
| ! | GGGCATCCTTTGGGAGCAAC+AGG | + | chr1.1:30182903-30182922 | MS.gene53674:CDS | 60.0% |
| GGGCCAACACCCATGATGGC+AGG | - | chr1.1:30182634-30182653 | None:intergenic | 65.0% | |
| GCGGCTGCTGCTACTGCTGC+TGG | + | chr1.1:30180512-30180531 | MS.gene53674:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 30178474 | 30183646 | 30178474 | ID=MS.gene53674 |
| chr1.1 | mRNA | 30178474 | 30183646 | 30178474 | ID=MS.gene53674.t1;Parent=MS.gene53674 |
| chr1.1 | exon | 30178474 | 30178566 | 30178474 | ID=MS.gene53674.t1.exon1;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30178474 | 30178566 | 30178474 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| chr1.1 | exon | 30179300 | 30179376 | 30179300 | ID=MS.gene53674.t1.exon2;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30179300 | 30179376 | 30179300 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| chr1.1 | exon | 30179512 | 30179596 | 30179512 | ID=MS.gene53674.t1.exon3;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30179512 | 30179596 | 30179512 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| chr1.1 | exon | 30179698 | 30179824 | 30179698 | ID=MS.gene53674.t1.exon4;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30179698 | 30179824 | 30179698 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| chr1.1 | exon | 30179902 | 30180000 | 30179902 | ID=MS.gene53674.t1.exon5;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30179902 | 30180000 | 30179902 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| chr1.1 | exon | 30180085 | 30180152 | 30180085 | ID=MS.gene53674.t1.exon6;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30180085 | 30180152 | 30180085 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| chr1.1 | exon | 30180287 | 30180394 | 30180287 | ID=MS.gene53674.t1.exon7;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30180287 | 30180394 | 30180287 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| chr1.1 | exon | 30180494 | 30180571 | 30180494 | ID=MS.gene53674.t1.exon8;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30180494 | 30180571 | 30180494 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| chr1.1 | exon | 30180653 | 30180785 | 30180653 | ID=MS.gene53674.t1.exon9;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30180653 | 30180785 | 30180653 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| chr1.1 | exon | 30180878 | 30180974 | 30180878 | ID=MS.gene53674.t1.exon10;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30180878 | 30180974 | 30180878 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| chr1.1 | exon | 30182606 | 30182729 | 30182606 | ID=MS.gene53674.t1.exon11;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30182606 | 30182729 | 30182606 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| chr1.1 | exon | 30182816 | 30182924 | 30182816 | ID=MS.gene53674.t1.exon12;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30182816 | 30182924 | 30182816 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| chr1.1 | exon | 30183360 | 30183443 | 30183360 | ID=MS.gene53674.t1.exon13;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30183360 | 30183443 | 30183360 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| chr1.1 | exon | 30183540 | 30183646 | 30183540 | ID=MS.gene53674.t1.exon14;Parent=MS.gene53674.t1 |
| chr1.1 | CDS | 30183540 | 30183646 | 30183540 | ID=cds.MS.gene53674.t1;Parent=MS.gene53674.t1 |
| Gene Sequence |
| Protein sequence |
