Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53726.t1 | XP_013467265.1 | 96.6 | 584 | 17 | 1 | 1 | 584 | 1 | 581 | 0.00E+00 | 1111.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53726.t1 | Q5XQC7 | 67.8 | 580 | 179 | 4 | 1 | 573 | 1 | 579 | 5.7e-226 | 785.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53726.t1 | A0A072VGY2 | 96.6 | 584 | 17 | 1 | 1 | 584 | 1 | 581 | 0.0e+00 | 1111.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000424 | MS.gene53726 | PPI |
| MS.gene030511 | MS.gene53726 | PPI |
| MS.gene53726 | MS.gene49772 | PPI |
| MS.gene53726 | MS.gene70112 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53726.t1 | MTR_1g048160 | 96.575 | 584 | 17 | 1 | 1 | 584 | 1 | 581 | 0.0 | 1156 |
| MS.gene53726.t1 | MTR_7g114130 | 88.527 | 584 | 66 | 1 | 1 | 583 | 1 | 584 | 0.0 | 1074 |
| MS.gene53726.t1 | MTR_8g096190 | 60.172 | 580 | 220 | 6 | 1 | 572 | 1 | 577 | 0.0 | 709 |
| MS.gene53726.t1 | MTR_8g096190 | 59.239 | 552 | 214 | 6 | 1 | 544 | 1 | 549 | 0.0 | 662 |
| MS.gene53726.t1 | MTR_7g114100 | 73.182 | 440 | 81 | 5 | 148 | 584 | 13 | 418 | 0.0 | 629 |
| MS.gene53726.t1 | MTR_8g096190 | 58.126 | 523 | 208 | 6 | 1 | 515 | 1 | 520 | 0.0 | 613 |
| MS.gene53726.t1 | MTR_7g033100 | 32.000 | 250 | 127 | 7 | 337 | 563 | 107 | 336 | 2.11e-22 | 100 |
| MS.gene53726.t1 | MTR_7g033100 | 32.540 | 252 | 123 | 9 | 337 | 563 | 107 | 336 | 3.45e-22 | 99.8 |
| MS.gene53726.t1 | MTR_6g092020 | 29.010 | 293 | 162 | 10 | 301 | 570 | 38 | 307 | 4.03e-21 | 96.3 |
| MS.gene53726.t1 | MTR_3g086520 | 32.411 | 253 | 122 | 10 | 337 | 563 | 125 | 354 | 1.17e-20 | 95.5 |
| MS.gene53726.t1 | MTR_3g086520 | 32.411 | 253 | 122 | 10 | 337 | 563 | 125 | 354 | 1.18e-20 | 95.5 |
| MS.gene53726.t1 | MTR_3g086520 | 32.411 | 253 | 122 | 10 | 337 | 563 | 122 | 351 | 1.43e-20 | 95.5 |
| MS.gene53726.t1 | MTR_8g089670 | 30.800 | 250 | 130 | 7 | 337 | 563 | 132 | 361 | 2.60e-20 | 94.7 |
| MS.gene53726.t1 | MTR_2g063843 | 29.021 | 286 | 157 | 10 | 301 | 563 | 51 | 313 | 2.61e-20 | 94.0 |
| MS.gene53726.t1 | MTR_2g063907 | 29.730 | 259 | 135 | 8 | 337 | 570 | 81 | 317 | 2.81e-20 | 94.0 |
| MS.gene53726.t1 | MTR_3g075530 | 30.903 | 288 | 144 | 11 | 331 | 583 | 88 | 355 | 3.14e-20 | 94.0 |
| MS.gene53726.t1 | MTR_2g063857 | 29.412 | 289 | 155 | 10 | 301 | 563 | 59 | 324 | 3.86e-20 | 93.2 |
| MS.gene53726.t1 | MTR_2g063857 | 29.021 | 286 | 156 | 8 | 303 | 563 | 61 | 324 | 3.86e-20 | 93.6 |
| MS.gene53726.t1 | MTR_6g092100 | 30.800 | 250 | 128 | 8 | 337 | 563 | 29 | 256 | 4.66e-20 | 91.7 |
| MS.gene53726.t1 | MTR_8g447220 | 29.603 | 277 | 141 | 10 | 337 | 581 | 80 | 334 | 8.97e-20 | 92.4 |
| MS.gene53726.t1 | MTR_8g447220 | 29.804 | 255 | 132 | 9 | 337 | 566 | 80 | 312 | 4.74e-19 | 89.0 |
| MS.gene53726.t1 | MTR_6g021730 | 28.025 | 314 | 168 | 10 | 288 | 563 | 63 | 356 | 5.21e-19 | 90.5 |
| MS.gene53726.t1 | MTR_3g096520 | 30.147 | 272 | 139 | 11 | 322 | 563 | 87 | 337 | 1.85e-18 | 88.6 |
| MS.gene53726.t1 | MTR_3g096520 | 30.147 | 272 | 139 | 11 | 322 | 563 | 104 | 354 | 2.06e-18 | 88.6 |
| MS.gene53726.t1 | MTR_3g096520 | 30.147 | 272 | 139 | 11 | 322 | 563 | 87 | 337 | 2.08e-18 | 88.6 |
| MS.gene53726.t1 | MTR_7g081170 | 28.846 | 156 | 92 | 4 | 366 | 511 | 85 | 231 | 7.55e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53726.t1 | AT1G08860 | 67.759 | 580 | 179 | 4 | 1 | 573 | 1 | 579 | 0.0 | 816 |
| MS.gene53726.t1 | AT5G61910 | 59.828 | 580 | 226 | 4 | 1 | 575 | 769 | 1346 | 0.0 | 713 |
| MS.gene53726.t1 | AT5G61900 | 59.828 | 580 | 226 | 4 | 1 | 575 | 1 | 578 | 0.0 | 710 |
| MS.gene53726.t1 | AT5G61900 | 59.828 | 580 | 226 | 4 | 1 | 575 | 1 | 578 | 0.0 | 710 |
| MS.gene53726.t1 | AT5G07300 | 57.019 | 577 | 240 | 4 | 1 | 570 | 1 | 576 | 0.0 | 682 |
| MS.gene53726.t1 | AT1G67800 | 31.746 | 252 | 129 | 7 | 337 | 565 | 93 | 324 | 5.54e-23 | 102 |
| MS.gene53726.t1 | AT1G67800 | 31.746 | 252 | 129 | 7 | 337 | 565 | 93 | 324 | 5.54e-23 | 102 |
| MS.gene53726.t1 | AT1G67800 | 31.746 | 252 | 129 | 7 | 337 | 565 | 93 | 324 | 5.54e-23 | 102 |
| MS.gene53726.t1 | AT1G67800 | 31.746 | 252 | 129 | 7 | 337 | 565 | 93 | 324 | 5.54e-23 | 102 |
| MS.gene53726.t1 | AT1G67800 | 31.746 | 252 | 129 | 7 | 337 | 565 | 113 | 344 | 6.75e-23 | 102 |
| MS.gene53726.t1 | AT1G67800 | 31.746 | 252 | 129 | 7 | 337 | 565 | 113 | 344 | 7.76e-23 | 101 |
| MS.gene53726.t1 | AT3G01650 | 31.600 | 250 | 128 | 7 | 337 | 563 | 156 | 385 | 3.77e-21 | 97.4 |
| MS.gene53726.t1 | AT3G01650 | 31.600 | 250 | 128 | 7 | 337 | 563 | 156 | 385 | 3.77e-21 | 97.4 |
| MS.gene53726.t1 | AT5G14420 | 30.400 | 250 | 131 | 7 | 337 | 563 | 122 | 351 | 4.69e-20 | 94.0 |
| MS.gene53726.t1 | AT5G14420 | 30.400 | 250 | 131 | 7 | 337 | 563 | 122 | 351 | 4.69e-20 | 94.0 |
| MS.gene53726.t1 | AT5G14420 | 30.400 | 250 | 131 | 7 | 337 | 563 | 122 | 351 | 4.69e-20 | 94.0 |
| MS.gene53726.t1 | AT5G14420 | 30.400 | 250 | 131 | 7 | 337 | 563 | 122 | 351 | 4.69e-20 | 94.0 |
| MS.gene53726.t1 | AT1G79380 | 29.348 | 276 | 146 | 10 | 322 | 568 | 58 | 313 | 6.89e-20 | 92.8 |
| MS.gene53726.t1 | AT5G63970 | 28.966 | 290 | 155 | 11 | 322 | 581 | 16 | 284 | 2.92e-19 | 90.1 |
| MS.gene53726.t1 | AT5G63970 | 28.966 | 290 | 155 | 11 | 322 | 581 | 16 | 284 | 2.92e-19 | 90.1 |
Find 131 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCAGGACCCACTTTATT+TGG | 0.094507 | 1.3:+29976436 | MS.gene53726:CDS |
| CTCTGTTGTGCAAGCTCTTT+TGG | 0.131277 | 1.3:+29977458 | MS.gene53726:CDS |
| AGACAAAGTGGTCTCCATTT+TGG | 0.193575 | 1.3:-29974920 | None:intergenic |
| AATATTTATGCAGGCTATTA+TGG | 0.197035 | 1.3:+29975838 | MS.gene53726:intron |
| GGAACTACCTAGTCAATTTC+TGG | 0.215767 | 1.3:+29977482 | MS.gene53726:CDS |
| CAGTTTCCTGCTTGGGGATT+TGG | 0.225046 | 1.3:+29975899 | MS.gene53726:CDS |
| TTGTTGGTTGTTGCAGATTC+AGG | 0.267952 | 1.3:-29972471 | None:intergenic |
| TGCTTTAACCACAGCATCTA+TGG | 0.279505 | 1.3:-29976906 | None:intergenic |
| TGGATTTGAACTAAACTTCT+TGG | 0.283622 | 1.3:+29975505 | MS.gene53726:CDS |
| AGAGGGTGCATGAGGGAAAT+GGG | 0.316016 | 1.3:-29977541 | None:intergenic |
| TAGAGGGTGCATGAGGGAAA+TGG | 0.331353 | 1.3:-29977542 | None:intergenic |
| CCCTTATCGATTCTTATAGT+TGG | 0.331752 | 1.3:+29976938 | MS.gene53726:CDS |
| TTACGCAGTGTCACGCTATC+AGG | 0.336454 | 1.3:+29976421 | MS.gene53726:CDS |
| ATAACTTCAGTCTTGAAAAT+AGG | 0.338975 | 1.3:-29974881 | None:intergenic |
| TGATAAGCAGTTTCCTGCTT+GGG | 0.349559 | 1.3:+29975892 | MS.gene53726:CDS |
| ACAACAATTTAAATCCAAAA+TGG | 0.352815 | 1.3:+29974906 | MS.gene53726:CDS |
| AGCATGTAACTTACTTGATC+TGG | 0.364428 | 1.3:+29973491 | MS.gene53726:CDS |
| TGTAGGAGTTGAAGGCATAA+TGG | 0.372940 | 1.3:+29976381 | MS.gene53726:CDS |
| TCCCTATGTGTTTAGGTTGT+AGG | 0.375125 | 1.3:+29976364 | MS.gene53726:intron |
| GGTTAAGCTCCTGCTTGGTT+TGG | 0.381608 | 1.3:-29974561 | None:intergenic |
| GATGGCAAATTGGAAGAATT+AGG | 0.387750 | 1.3:+29973702 | MS.gene53726:CDS |
| TGTCTTAATTTCCAGCAGTT+TGG | 0.391943 | 1.3:+29974938 | MS.gene53726:CDS |
| AATAGTTTACAAACCTTTGT+GGG | 0.404665 | 1.3:-29973961 | None:intergenic |
| TCTGAAGGGTCAACTCTTTG+TGG | 0.407921 | 1.3:+29975433 | MS.gene53726:CDS |
| GATAACTGGTCCAAATAAAG+TGG | 0.410564 | 1.3:-29976446 | None:intergenic |
| ATCGACGGCGTCATTGTTGT+TGG | 0.415859 | 1.3:-29972487 | None:intergenic |
| TGTGCAGCCATGTTGATAAC+TGG | 0.419195 | 1.3:-29976460 | None:intergenic |
| CAAGCAGGAGCTTAACCTTA+AGG | 0.422863 | 1.3:+29974567 | MS.gene53726:CDS |
| TCGATGTAATGCAAAGAATC+TGG | 0.423247 | 1.3:-29975660 | None:intergenic |
| TTGGTTGCGGTAGATTTCAC+TGG | 0.425129 | 1.3:+29975524 | MS.gene53726:CDS |
| GTTTAGGTTGTAGGAGTTGA+AGG | 0.425836 | 1.3:+29976373 | MS.gene53726:intron |
| CAGATTAAAACAATGAGATA+TGG | 0.429091 | 1.3:-29975942 | None:intergenic |
| GAAATTTCAGAGTGATCCTA+TGG | 0.433621 | 1.3:+29973656 | MS.gene53726:intron |
| TTGTAAAATCTATTGAATAG+AGG | 0.435997 | 1.3:-29977559 | None:intergenic |
| ACCAACTATAAGAATCGATA+AGG | 0.436043 | 1.3:-29976939 | None:intergenic |
| CTTACTTTGTACTTCTCTCA+TGG | 0.444065 | 1.3:-29977174 | None:intergenic |
| CCAACTATAAGAATCGATAA+GGG | 0.444274 | 1.3:-29976938 | None:intergenic |
| TATCAACATGGCTGCACAAA+TGG | 0.446356 | 1.3:+29976465 | MS.gene53726:CDS |
| TTACTTTACTTCCAAACTGC+TGG | 0.447464 | 1.3:-29974949 | None:intergenic |
| TTTCCTGCTTGGGGATTTGG+AGG | 0.449938 | 1.3:+29975902 | MS.gene53726:CDS |
| GAATAGTTTACAAACCTTTG+TGG | 0.453878 | 1.3:-29973962 | None:intergenic |
| AACTGTCTCCTCAGCATGAA+TGG | 0.454232 | 1.3:-29974639 | None:intergenic |
| AAAGAAAGGAGATGGCAAAT+TGG | 0.459334 | 1.3:+29973692 | MS.gene53726:CDS |
| CTGAATGATCAAGAATTCCT+TGG | 0.460295 | 1.3:+29974239 | MS.gene53726:CDS |
| AGTGGCAATCATGTACTTAT+CGG | 0.460443 | 1.3:+29975101 | MS.gene53726:CDS |
| TGTGGATCAATATTGTGAAA+AGG | 0.461879 | 1.3:+29975451 | MS.gene53726:CDS |
| CTGATAAGCAGTTTCCTGCT+TGG | 0.464590 | 1.3:+29975891 | MS.gene53726:CDS |
| TTCTTTATTATAGGTTCTGA+AGG | 0.465940 | 1.3:+29975418 | MS.gene53726:intron |
| ACAATGAGATATGGTACCTC+CGG | 0.467091 | 1.3:-29975933 | None:intergenic |
| CAGGTACTGGATGCTGATAA+TGG | 0.468704 | 1.3:+29977092 | MS.gene53726:intron |
| TTACTTTGTACTTCTCTCAT+GGG | 0.469535 | 1.3:-29977173 | None:intergenic |
| TATATATGTCCAGCTTCAAA+TGG | 0.469854 | 1.3:+29975624 | MS.gene53726:intron |
| TATCTTCCGTTGCTCTCACT+TGG | 0.470928 | 1.3:+29974685 | MS.gene53726:CDS |
| CATAACGAACTGTTTGAATC+CGG | 0.472537 | 1.3:+29973737 | MS.gene53726:CDS |
| ATGCAGGCTATTATGGAGGT+TGG | 0.472616 | 1.3:+29975845 | MS.gene53726:intron |
| AATAGTAGTCAAATAAATCA+AGG | 0.473244 | 1.3:+29974608 | MS.gene53726:CDS |
| TTGCATTACATCGATTTATC+CGG | 0.473940 | 1.3:+29975669 | MS.gene53726:CDS |
| ACTCTTGATATCCTTAGAAA+AGG | 0.477739 | 1.3:-29974836 | None:intergenic |
| TTTCTCACCTCAGAGCTAGT+TGG | 0.480972 | 1.3:-29975974 | None:intergenic |
| TCGGTTAAATTCATACCAAA+AGG | 0.481359 | 1.3:+29975692 | MS.gene53726:CDS |
| GATTTCTTCTACACGGCTCA+AGG | 0.481874 | 1.3:+29972507 | MS.gene53726:CDS |
| TGTAAAATCTATTGAATAGA+GGG | 0.482556 | 1.3:-29977558 | None:intergenic |
| GAAGGCATAATGGAAGCTTA+TGG | 0.483853 | 1.3:+29976391 | MS.gene53726:CDS |
| TCTTGTCCATTGCGTGTGGA+TGG | 0.491556 | 1.3:-29975314 | None:intergenic |
| CTTAAGGTTAAGCTCCTGCT+TGG | 0.492355 | 1.3:-29974566 | None:intergenic |
| TTTGCATATACCACAGCCAT+AGG | 0.503237 | 1.3:-29973672 | None:intergenic |
| TGATCTGGACATTGCATCAA+AGG | 0.506204 | 1.3:+29973506 | MS.gene53726:CDS |
| TGCAAAGAATCTGGCTGTTG+AGG | 0.510911 | 1.3:-29975651 | None:intergenic |
| TCGATTCTTATAGTTGGTGT+TGG | 0.511769 | 1.3:+29976944 | MS.gene53726:CDS |
| GTGGCAATCATGTACTTATC+GGG | 0.514625 | 1.3:+29975102 | MS.gene53726:CDS |
| GACATTGACACATCATATCA+TGG | 0.517697 | 1.3:+29973934 | MS.gene53726:CDS |
| TGAACTAAACTTCTTGGTTG+CGG | 0.519654 | 1.3:+29975511 | MS.gene53726:CDS |
| ATATCAAGAGTGGTTGAGAG+TGG | 0.522006 | 1.3:+29974848 | MS.gene53726:CDS |
| GATAAGCAGTTTCCTGCTTG+GGG | 0.534286 | 1.3:+29975893 | MS.gene53726:CDS |
| TCAAAACACTCAATAAGTAA+TGG | 0.535000 | 1.3:-29975068 | None:intergenic |
| AGTGCTGTTATATGATGAAA+GGG | 0.548407 | 1.3:-29976497 | None:intergenic |
| TAGTGCTGTTATATGATGAA+AGG | 0.549634 | 1.3:-29976498 | None:intergenic |
| CTATGTATTGCTTATCATAA+CGG | 0.550933 | 1.3:+29976525 | MS.gene53726:CDS |
| TTTATTGACTACATATCTAG+TGG | 0.553134 | 1.3:+29975485 | MS.gene53726:CDS |
| AAGCGCTGATTTCACGAGCA+TGG | 0.554254 | 1.3:+29976967 | MS.gene53726:CDS |
| CAATGAGATATGGTACCTCC+GGG | 0.558114 | 1.3:-29975932 | None:intergenic |
| CGAACTGTTTGAATCCGGAA+TGG | 0.558135 | 1.3:+29973742 | MS.gene53726:CDS |
| TTGGTATGAATTTAACCGAC+CGG | 0.559167 | 1.3:-29975688 | None:intergenic |
| ATAGTAGTCAAATAAATCAA+GGG | 0.568639 | 1.3:+29974609 | MS.gene53726:CDS |
| CGCCGTCGATTTCTTCTACA+CGG | 0.569618 | 1.3:+29972500 | MS.gene53726:CDS |
| CTTCTCTTGTCCATTGCGTG+TGG | 0.575583 | 1.3:-29975318 | None:intergenic |
| TTTCCTCCAAATCCCCAAGC+AGG | 0.575985 | 1.3:-29975905 | None:intergenic |
| GCTGTGGTATATGCAAAGAA+AGG | 0.576181 | 1.3:+29973678 | MS.gene53726:CDS |
| AAATTAGGGTTTATAATGGG+AGG | 0.576533 | 1.3:+29972399 | None:intergenic |
| GTCATGCCATCCACACGCAA+TGG | 0.577672 | 1.3:+29975308 | MS.gene53726:CDS |
| GCCATTGTTTACCAATGTCG+AGG | 0.577910 | 1.3:+29972536 | MS.gene53726:CDS |
| AATTAGGGTTTATAATGGGA+GGG | 0.580841 | 1.3:+29972400 | None:intergenic |
| TGCTGGAAATTAAGACAAAG+TGG | 0.581538 | 1.3:-29974932 | None:intergenic |
| TATTGAATAGAGGGTGCATG+AGG | 0.582257 | 1.3:-29977549 | None:intergenic |
| TCAGAGTGATCCTATGGCTG+TGG | 0.582904 | 1.3:+29973662 | MS.gene53726:intron |
| TACTTTGTACTTCTCTCATG+GGG | 0.583824 | 1.3:-29977172 | None:intergenic |
| CACACGCAATGGACAAGAGA+AGG | 0.587694 | 1.3:+29975319 | MS.gene53726:CDS |
| GGCAATTACCATTCATGCTG+AGG | 0.588514 | 1.3:+29974631 | MS.gene53726:CDS |
| TCAAGAGTGGTTGAGAGTGG+AGG | 0.591973 | 1.3:+29974851 | MS.gene53726:CDS |
| ACCTTAAGGCTTCAAAACAA+AGG | 0.593551 | 1.3:+29974581 | MS.gene53726:CDS |
| GGCTAGTTGCACTTTATCAG+AGG | 0.599539 | 1.3:+29974265 | MS.gene53726:CDS |
| GTATATGCAAAGAAAGGAGA+TGG | 0.599811 | 1.3:+29973684 | MS.gene53726:CDS |
| AAGTGCAACTAGCCTCTCCA+AGG | 0.602063 | 1.3:-29974256 | None:intergenic |
| TCAAGAAACCATAGATGCTG+TGG | 0.603071 | 1.3:+29976898 | MS.gene53726:CDS |
| ATTTATGCAGGCTATTATGG+AGG | 0.603196 | 1.3:+29975841 | MS.gene53726:intron |
| AGATTGTGACCAAACCAAGC+AGG | 0.609422 | 1.3:+29974552 | MS.gene53726:intron |
| TCTTTATTATAGGTTCTGAA+GGG | 0.611405 | 1.3:+29975419 | MS.gene53726:intron |
| TTAAGGCTTCAAAACAAAGG+AGG | 0.617378 | 1.3:+29974584 | MS.gene53726:CDS |
| AATCGTACATACCTCGACAT+TGG | 0.617770 | 1.3:-29972547 | None:intergenic |
| TAAGGCTTCAAAACAAAGGA+GGG | 0.618624 | 1.3:+29974585 | MS.gene53726:CDS |
| GAGGGTGCATGAGGGAAATG+GGG | 0.624667 | 1.3:-29977540 | None:intergenic |
| CAACTATAAGAATCGATAAG+GGG | 0.627024 | 1.3:-29976937 | None:intergenic |
| TGAAGGATAGCTTACACAAG+TGG | 0.629629 | 1.3:-29973807 | None:intergenic |
| ACCTCGACATTGGTAAACAA+TGG | 0.630957 | 1.3:-29972537 | None:intergenic |
| ATATCATGGTGTTCCCACAA+AGG | 0.631966 | 1.3:+29973948 | MS.gene53726:CDS |
| ATAACTGGTCCAAATAAAGT+GGG | 0.632296 | 1.3:-29976445 | None:intergenic |
| TGAGGGAAATGGGGAACGAG+TGG | 0.634702 | 1.3:-29977531 | None:intergenic |
| GGATTTGGAGGAAAGATACC+CGG | 0.639302 | 1.3:+29975914 | MS.gene53726:CDS |
| GCAGCGAAAGAAGCAGTAGG+AGG | 0.639513 | 1.3:+29972441 | MS.gene53726:CDS |
| TAGTAGTCAAATAAATCAAG+GGG | 0.641244 | 1.3:+29974610 | MS.gene53726:CDS |
| ATGAAAGCCAGAAATTGACT+AGG | 0.645745 | 1.3:-29977489 | None:intergenic |
| TGATCAAGAATTCCTTGGAG+AGG | 0.649527 | 1.3:+29974244 | MS.gene53726:CDS |
| AAAGCAGCGAAAGAAGCAGT+AGG | 0.650157 | 1.3:+29972438 | MS.gene53726:CDS |
| ATTTGGACCAGTTATCAACA+TGG | 0.650980 | 1.3:+29976453 | MS.gene53726:CDS |
| TGTTATCCAAGTGAGAGCAA+CGG | 0.656188 | 1.3:-29974691 | None:intergenic |
| ATTGAATAGAGGGTGCATGA+GGG | 0.680710 | 1.3:-29977548 | None:intergenic |
| TGGGAGTCCAACTAGCTCTG+AGG | 0.699541 | 1.3:+29975967 | MS.gene53726:CDS |
| CGCTGATTTCACGAGCATGG+AGG | 0.700427 | 1.3:+29976970 | MS.gene53726:CDS |
| ATTACATCGATTTATCCGGT+CGG | 0.702197 | 1.3:+29975673 | MS.gene53726:CDS |
| AGCCGTGTAGAAGAAATCGA+CGG | 0.704432 | 1.3:-29972502 | None:intergenic |
| TTTGGAGGAAAGATACCCGG+AGG | 0.768868 | 1.3:+29975917 | MS.gene53726:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATTAAATTTCTTTATTAT+AGG | + | chr1.3:29975409-29975428 | MS.gene53726:intron | 10.0% |
| !!! | ATAATTGATTTTTATAACTT+TGG | + | chr1.3:29973053-29973072 | MS.gene53726:intron | 10.0% |
| !!! | ATTTAATACTCTTATATTTT+TGG | + | chr1.3:29977328-29977347 | MS.gene53726:intron | 10.0% |
| !!! | TATAGATTTTTAACTATAAA+TGG | - | chr1.3:29972964-29972983 | None:intergenic | 10.0% |
| !!! | TTTTAAATAGTTTTGATTAA+AGG | + | chr1.3:29976736-29976755 | MS.gene53726:intron | 10.0% |
| !!! | AAGGCAAATATTTTAATAAT+CGG | + | chr1.3:29976755-29976774 | MS.gene53726:intron | 15.0% |
| !!! | TATATTAATTTTCGAAATGA+AGG | - | chr1.3:29973827-29973846 | None:intergenic | 15.0% |
| !!! | TTAGTTTTGTAAAATTGATT+TGG | + | chr1.3:29972648-29972667 | MS.gene53726:intron | 15.0% |
| !! | AAAAGAAGTTAAAAAATGGT+AGG | - | chr1.3:29975807-29975826 | None:intergenic | 20.0% |
| !! | AAAATCAATTATGACATGTT+TGG | - | chr1.3:29973045-29973064 | None:intergenic | 20.0% |
| !! | AAATCAATTATGACATGTTT+GGG | - | chr1.3:29973044-29973063 | None:intergenic | 20.0% |
| !! | AAGAAATTTAATCAAGTGTA+AGG | - | chr1.3:29975403-29975422 | None:intergenic | 20.0% |
| !! | AATAGTAGTCAAATAAATCA+AGG | + | chr1.3:29974608-29974627 | MS.gene53726:CDS | 20.0% |
| !! | ACAACAATTTAAATCCAAAA+TGG | + | chr1.3:29974906-29974925 | MS.gene53726:CDS | 20.0% |
| !! | ATAGTAGTCAAATAAATCAA+GGG | + | chr1.3:29974609-29974628 | MS.gene53726:CDS | 20.0% |
| !! | ATTATCAACTTTAAACTTGA+TGG | - | chr1.3:29977297-29977316 | None:intergenic | 20.0% |
| !! | GAGTAATCTATATATGAATA+TGG | - | chr1.3:29975012-29975031 | None:intergenic | 20.0% |
| !! | GTCAATTATTCTATTAACTA+AGG | + | chr1.3:29975552-29975571 | MS.gene53726:intron | 20.0% |
| !! | TATGGCTGAAATATATTATT+TGG | + | chr1.3:29973127-29973146 | MS.gene53726:intron | 20.0% |
| !! | TTTCAAAACTAATTCTTCAT+TGG | - | chr1.3:29973369-29973388 | None:intergenic | 20.0% |
| !!! | ACCATTTTTTAACTTCTTTT+CGG | + | chr1.3:29975807-29975826 | MS.gene53726:intron | 20.0% |
| !!! | AGTCAGAATAATTTTAGATT+GGG | + | chr1.3:29974051-29974070 | MS.gene53726:intron | 20.0% |
| !!! | ATCGAATTCAAGTTATATTT+TGG | + | chr1.3:29975360-29975379 | MS.gene53726:intron | 20.0% |
| !!! | TAACATTTTATGATTAATCG+AGG | + | chr1.3:29974001-29974020 | MS.gene53726:intron | 20.0% |
| !!! | TGAGATGAAATTGATTTTAT+TGG | - | chr1.3:29976088-29976107 | None:intergenic | 20.0% |
| !!! | TTTTGCATCTATATATAGTA+TGG | - | chr1.3:29975196-29975215 | None:intergenic | 20.0% |
| ! | AATAGTTTACAAACCTTTGT+GGG | - | chr1.3:29973964-29973983 | None:intergenic | 25.0% |
| ! | AATATAGCAATGAGATTATG+AGG | + | chr1.3:29973841-29973860 | MS.gene53726:intron | 25.0% |
| ! | AATATTTATGCAGGCTATTA+TGG | + | chr1.3:29975838-29975857 | MS.gene53726:intron | 25.0% |
| ! | ACCGAAAAGAAGTTAAAAAA+TGG | - | chr1.3:29975811-29975830 | None:intergenic | 25.0% |
| ! | AGAATCAGAAATGTAATATC+AGG | - | chr1.3:29973319-29973338 | None:intergenic | 25.0% |
| ! | AGAATTAAGATTATGGTCTA+TGG | + | chr1.3:29974476-29974495 | MS.gene53726:intron | 25.0% |
| ! | AGGTAATAGTTGAAAAAACA+TGG | - | chr1.3:29976288-29976307 | None:intergenic | 25.0% |
| ! | AGTTGAATACCATAAGTAAT+TGG | - | chr1.3:29973448-29973467 | None:intergenic | 25.0% |
| ! | ATAACTTCAGTCTTGAAAAT+AGG | - | chr1.3:29974884-29974903 | None:intergenic | 25.0% |
| ! | ATGTATCAAGTTCATGATTA+AGG | - | chr1.3:29976318-29976337 | None:intergenic | 25.0% |
| ! | CAGATTAAAACAATGAGATA+TGG | - | chr1.3:29975945-29975964 | None:intergenic | 25.0% |
| ! | CCATCAAATCAATTATGATA+TGG | + | chr1.3:29973109-29973128 | MS.gene53726:intron | 25.0% |
| ! | CTATGTATTGCTTATCATAA+CGG | + | chr1.3:29976525-29976544 | MS.gene53726:CDS | 25.0% |
| ! | GAATCAGAAATGTAATATCA+GGG | - | chr1.3:29973318-29973337 | None:intergenic | 25.0% |
| ! | TAGTAGTCAAATAAATCAAG+GGG | + | chr1.3:29974610-29974629 | MS.gene53726:CDS | 25.0% |
| ! | TATAATTTCCCTATGTGTTT+AGG | + | chr1.3:29976357-29976376 | MS.gene53726:intron | 25.0% |
| ! | TCAAAACACTCAATAAGTAA+TGG | - | chr1.3:29975071-29975090 | None:intergenic | 25.0% |
| ! | TGTATGCAGAATTAAGATTA+TGG | + | chr1.3:29974469-29974488 | MS.gene53726:intron | 25.0% |
| ! | TTCTCTATCAAGAATTTAGA+AGG | - | chr1.3:29974101-29974120 | None:intergenic | 25.0% |
| !! | CAGTCAGAATAATTTTAGAT+TGG | + | chr1.3:29974050-29974069 | MS.gene53726:intron | 25.0% |
| !! | CATTTGATTGGTTATTCTTA+AGG | - | chr1.3:29976840-29976859 | None:intergenic | 25.0% |
| !! | CTATTTAAAATGACCTGAAA+TGG | + | chr1.3:29973592-29973611 | MS.gene53726:intron | 25.0% |
| !! | GTCAGAATAATTTTAGATTG+GGG | + | chr1.3:29974052-29974071 | MS.gene53726:intron | 25.0% |
| !! | GTTATTATGGATCATAGTTT+TGG | + | chr1.3:29976171-29976190 | MS.gene53726:intron | 25.0% |
| !! | GTTCTGAATAATATTTATGC+AGG | + | chr1.3:29975829-29975848 | MS.gene53726:intron | 25.0% |
| !! | TGAATTCTTTTTCCTGAAAA+GGG | + | chr1.3:29973153-29973172 | MS.gene53726:intron | 25.0% |
| !! | TTAATTTTCTCTATCCATTC+CGG | - | chr1.3:29973759-29973778 | None:intergenic | 25.0% |
| !! | TTCTTTATTATAGGTTCTGA+AGG | + | chr1.3:29975418-29975437 | MS.gene53726:intron | 25.0% |
| !! | TTTAATTTCTTTCTCTATGC+AGG | + | chr1.3:29975040-29975059 | MS.gene53726:intron | 25.0% |
| !! | TTTATTGACTACATATCTAG+TGG | + | chr1.3:29975485-29975504 | MS.gene53726:CDS | 25.0% |
| !!! | ATGCTAGACTTATTTTACAA+AGG | + | chr1.3:29976029-29976048 | MS.gene53726:intron | 25.0% |
| !!! | CCATATCATAATTGATTTGA+TGG | - | chr1.3:29973112-29973131 | None:intergenic | 25.0% |
| !!! | CTCATTGTTTTAATCTGAAT+GGG | + | chr1.3:29975948-29975967 | MS.gene53726:CDS | 25.0% |
| !!! | CTCTGTTATTTTTAGTACAA+TGG | + | chr1.3:29975999-29976018 | MS.gene53726:intron | 25.0% |
| !!! | GAAATTGATTTTATTGGAGA+AGG | - | chr1.3:29976082-29976101 | None:intergenic | 25.0% |
| !!! | TCTCATTGTTTTAATCTGAA+TGG | + | chr1.3:29975947-29975966 | MS.gene53726:CDS | 25.0% |
| !!! | TCTTTATTATAGGTTCTGAA+GGG | + | chr1.3:29975419-29975438 | MS.gene53726:intron | 25.0% |
| !!! | TGATTTTTTCAGTTTACTGT+TGG | - | chr1.3:29975240-29975259 | None:intergenic | 25.0% |
| AAGCTATACCAAGAGAAAAA+AGG | + | chr1.3:29975275-29975294 | MS.gene53726:CDS | 30.0% | |
| ACAAGTGATAGAGGTTATTA+TGG | + | chr1.3:29976158-29976177 | MS.gene53726:intron | 30.0% | |
| ACCAACTATAAGAATCGATA+AGG | - | chr1.3:29976942-29976961 | None:intergenic | 30.0% | |
| ACCTGCCAAAAATACAATAA+TGG | - | chr1.3:29977430-29977449 | None:intergenic | 30.0% | |
| ACTCTTGATATCCTTAGAAA+AGG | - | chr1.3:29974839-29974858 | None:intergenic | 30.0% | |
| AGAACATATAAGATGAAGCT+AGG | - | chr1.3:29974751-29974770 | None:intergenic | 30.0% | |
| ATAACCTCTATCACTTGTAA+TGG | - | chr1.3:29976156-29976175 | None:intergenic | 30.0% | |
| ATAACTGGTCCAAATAAAGT+GGG | - | chr1.3:29976448-29976467 | None:intergenic | 30.0% | |
| ATAGAGAAAACTTCGACTAT+AGG | + | chr1.3:29974113-29974132 | MS.gene53726:intron | 30.0% | |
| ATCGTCATGAAATCTTGAAT+GGG | - | chr1.3:29975784-29975803 | None:intergenic | 30.0% | |
| CAAACGAAAAACAGTGATAA+TGG | - | chr1.3:29972579-29972598 | None:intergenic | 30.0% | |
| CAACTATAAGAATCGATAAG+GGG | - | chr1.3:29976940-29976959 | None:intergenic | 30.0% | |
| CATGGTGATATAAGTTTCTT+AGG | - | chr1.3:29976270-29976289 | None:intergenic | 30.0% | |
| CCAACTATAAGAATCGATAA+GGG | - | chr1.3:29976941-29976960 | None:intergenic | 30.0% | |
| CCTGCCAAAAATACAATAAT+GGG | - | chr1.3:29977429-29977448 | None:intergenic | 30.0% | |
| CTGCCAAAAATACAATAATG+GGG | - | chr1.3:29977428-29977447 | None:intergenic | 30.0% | |
| CTTCATTGGCAAAAATACTT+TGG | - | chr1.3:29973355-29973374 | None:intergenic | 30.0% | |
| GAAAGAAAGCAACAAAATGA+GGG | - | chr1.3:29973899-29973918 | None:intergenic | 30.0% | |
| GAATACCATAAGTAATTGGA+AGG | - | chr1.3:29973444-29973463 | None:intergenic | 30.0% | |
| GAATAGTTTACAAACCTTTG+TGG | - | chr1.3:29973965-29973984 | None:intergenic | 30.0% | |
| TAGAGAAAACTTCGACTATA+GGG | + | chr1.3:29974114-29974133 | MS.gene53726:intron | 30.0% | |
| TATATATGTCCAGCTTCAAA+TGG | + | chr1.3:29975624-29975643 | MS.gene53726:intron | 30.0% | |
| TCGGTTAAATTCATACCAAA+AGG | + | chr1.3:29975692-29975711 | MS.gene53726:CDS | 30.0% | |
| TGAAAGAAAGCAACAAAATG+AGG | - | chr1.3:29973900-29973919 | None:intergenic | 30.0% | |
| TGCTAAGGAAAAGAAACTTA+GGG | - | chr1.3:29977011-29977030 | None:intergenic | 30.0% | |
| TGGATTTGAACTAAACTTCT+TGG | + | chr1.3:29975505-29975524 | MS.gene53726:CDS | 30.0% | |
| TGTAAAGCCTAAAGATGTTT+AGG | - | chr1.3:29975164-29975183 | None:intergenic | 30.0% | |
| TGTGGATCAATATTGTGAAA+AGG | + | chr1.3:29975451-29975470 | MS.gene53726:CDS | 30.0% | |
| TGTTTAGCCTAAACATCTTT+AGG | + | chr1.3:29975154-29975173 | MS.gene53726:intron | 30.0% | |
| TTACTTTGTACTTCTCTCAT+GGG | - | chr1.3:29977176-29977195 | None:intergenic | 30.0% | |
| TTAGATTGGGGTAAAATACA+GGG | + | chr1.3:29974064-29974083 | MS.gene53726:intron | 30.0% | |
| TTCATGATTAAGGAGTAAGA+AGG | - | chr1.3:29976308-29976327 | None:intergenic | 30.0% | |
| TTTACAAAACTAACGAAGCA+CGG | - | chr1.3:29972641-29972660 | None:intergenic | 30.0% | |
| TTTAGATTGGGGTAAAATAC+AGG | + | chr1.3:29974063-29974082 | MS.gene53726:intron | 30.0% | |
| ! | AGTGCTGTTATATGATGAAA+GGG | - | chr1.3:29976500-29976519 | None:intergenic | 30.0% |
| ! | CTGAATTCTTTTTCCTGAAA+AGG | + | chr1.3:29973152-29973171 | MS.gene53726:intron | 30.0% |
| ! | GAACCCCATTATTGTATTTT+TGG | + | chr1.3:29977422-29977441 | MS.gene53726:intron | 30.0% |
| ! | TAAGTTTCTTTTCCTTAGCA+CGG | + | chr1.3:29977011-29977030 | MS.gene53726:intron | 30.0% |
| ! | TAGTGCTGTTATATGATGAA+AGG | - | chr1.3:29976501-29976520 | None:intergenic | 30.0% |
| !! | GTTCTAAGGTTTATGATTAC+AGG | + | chr1.3:29977073-29977092 | MS.gene53726:intron | 30.0% |
| !! | TTGCATTACATCGATTTATC+CGG | + | chr1.3:29975669-29975688 | MS.gene53726:CDS | 30.0% |
| !! | TTTTCTAAGGATATCAAGAG+TGG | + | chr1.3:29974838-29974857 | MS.gene53726:CDS | 30.0% |
| !!! | ATTATTGTATTTTTGGCAGG+TGG | + | chr1.3:29977429-29977448 | MS.gene53726:intron | 30.0% |
| !!! | CTAGACTTATTTTACAAAGG+TGG | + | chr1.3:29976032-29976051 | MS.gene53726:intron | 30.0% |
| !!! | GACTATAGGGTATTTTAGTT+TGG | + | chr1.3:29974127-29974146 | MS.gene53726:intron | 30.0% |
| !!! | TATGGATCATAGTTTTGGAT+TGG | + | chr1.3:29976176-29976195 | MS.gene53726:intron | 30.0% |
| !!! | TGTTTTGATTTCAATAGCAG+TGG | + | chr1.3:29975083-29975102 | MS.gene53726:CDS | 30.0% |
| !!! | TTTTGAAATGAACCCTTTTC+AGG | - | chr1.3:29973168-29973187 | None:intergenic | 30.0% |
| AAAGAAAGGAGATGGCAAAT+TGG | + | chr1.3:29973692-29973711 | MS.gene53726:CDS | 35.0% | |
| AAGGAAAAGAAACTTAGGGA+AGG | - | chr1.3:29977007-29977026 | None:intergenic | 35.0% | |
| ACCTTAAGGCTTCAAAACAA+AGG | + | chr1.3:29974581-29974600 | MS.gene53726:CDS | 35.0% | |
| ACGAGTAAAGATTGTTAGCA+TGG | - | chr1.3:29977396-29977415 | None:intergenic | 35.0% | |
| AGCATGTAACTTACTTGATC+TGG | + | chr1.3:29973491-29973510 | MS.gene53726:CDS | 35.0% | |
| AGGTTTATGATTACAGGTAC+TGG | + | chr1.3:29977079-29977098 | MS.gene53726:intron | 35.0% | |
| AGTGGCAATCATGTACTTAT+CGG | + | chr1.3:29975101-29975120 | MS.gene53726:CDS | 35.0% | |
| AGTTCCATTACAAGTGATAG+AGG | + | chr1.3:29976149-29976168 | MS.gene53726:intron | 35.0% | |
| ATAAAAAGCTGTGACGATGT+TGG | + | chr1.3:29974151-29974170 | MS.gene53726:intron | 35.0% | |
| ATGAAAGCCAGAAATTGACT+AGG | - | chr1.3:29977492-29977511 | None:intergenic | 35.0% | |
| ATGACATGTTTGACATGTGT+TGG | + | chr1.3:29972716-29972735 | MS.gene53726:intron | 35.0% | |
| ATTTATGCAGGCTATTATGG+AGG | + | chr1.3:29975841-29975860 | MS.gene53726:intron | 35.0% | |
| ATTTGGACCAGTTATCAACA+TGG | + | chr1.3:29976453-29976472 | MS.gene53726:CDS | 35.0% | |
| CATAACGAACTGTTTGAATC+CGG | + | chr1.3:29973737-29973756 | MS.gene53726:CDS | 35.0% | |
| CTGAATGATCAAGAATTCCT+TGG | + | chr1.3:29974239-29974258 | MS.gene53726:CDS | 35.0% | |
| CTTACTTTGTACTTCTCTCA+TGG | - | chr1.3:29977177-29977196 | None:intergenic | 35.0% | |
| GAAATTTCAGAGTGATCCTA+TGG | + | chr1.3:29973656-29973675 | MS.gene53726:intron | 35.0% | |
| GAAGATCATGGACATTTGAT+TGG | - | chr1.3:29976852-29976871 | None:intergenic | 35.0% | |
| GACATTGACACATCATATCA+TGG | + | chr1.3:29973934-29973953 | MS.gene53726:CDS | 35.0% | |
| GATAACAAAGCATACTTAGC+TGG | - | chr1.3:29977039-29977058 | None:intergenic | 35.0% | |
| GATAACTGGTCCAAATAAAG+TGG | - | chr1.3:29976449-29976468 | None:intergenic | 35.0% | |
| GATCGTCATGAAATCTTGAA+TGG | - | chr1.3:29975785-29975804 | None:intergenic | 35.0% | |
| GATGGCAAATTGGAAGAATT+AGG | + | chr1.3:29973702-29973721 | MS.gene53726:CDS | 35.0% | |
| GTAAGCTCTATACTTGTCAA+TGG | + | chr1.3:29975714-29975733 | MS.gene53726:intron | 35.0% | |
| GTATATGCAAAGAAAGGAGA+TGG | + | chr1.3:29973684-29973703 | MS.gene53726:CDS | 35.0% | |
| GTGCTAAGGAAAAGAAACTT+AGG | - | chr1.3:29977012-29977031 | None:intergenic | 35.0% | |
| TAAGGCTTCAAAACAAAGGA+GGG | + | chr1.3:29974585-29974604 | MS.gene53726:CDS | 35.0% | |
| TACTTTGTACTTCTCTCATG+GGG | - | chr1.3:29977175-29977194 | None:intergenic | 35.0% | |
| TCCTACAACCTAAACACATA+GGG | - | chr1.3:29976368-29976387 | None:intergenic | 35.0% | |
| TCGATGTAATGCAAAGAATC+TGG | - | chr1.3:29975663-29975682 | None:intergenic | 35.0% | |
| TGAAAGATAGCAACCATTTC+AGG | - | chr1.3:29973608-29973627 | None:intergenic | 35.0% | |
| TGAACTAAACTTCTTGGTTG+CGG | + | chr1.3:29975511-29975530 | MS.gene53726:CDS | 35.0% | |
| TGAGCGAATAACATGTTCTA+AGG | + | chr1.3:29977059-29977078 | MS.gene53726:intron | 35.0% | |
| TGCTGGAAATTAAGACAAAG+TGG | - | chr1.3:29974935-29974954 | None:intergenic | 35.0% | |
| TGTCTTAATTTCCAGCAGTT+TGG | + | chr1.3:29974938-29974957 | MS.gene53726:CDS | 35.0% | |
| TTAAGGCTTCAAAACAAAGG+AGG | + | chr1.3:29974584-29974603 | MS.gene53726:CDS | 35.0% | |
| TTACTTTACTTCCAAACTGC+TGG | - | chr1.3:29974952-29974971 | None:intergenic | 35.0% | |
| TTGGTATGAATTTAACCGAC+CGG | - | chr1.3:29975691-29975710 | None:intergenic | 35.0% | |
| ! | ATTAATTTGAGTTTGCGCGA+AGG | + | chr1.3:29973077-29973096 | MS.gene53726:intron | 35.0% |
| ! | CAAGTATAGAGCTTACCTTT+TGG | - | chr1.3:29975710-29975729 | None:intergenic | 35.0% |
| ! | CTTGTAATGGAACTCATAGT+AGG | - | chr1.3:29976143-29976162 | None:intergenic | 35.0% |
| ! | TCGATTCTTATAGTTGGTGT+TGG | + | chr1.3:29976944-29976963 | MS.gene53726:CDS | 35.0% |
| ! | TCTCTTGGTATAGCTTTTCA+AGG | - | chr1.3:29975271-29975290 | None:intergenic | 35.0% |
| ! | TTTGGCCTTCCAATTACTTA+TGG | + | chr1.3:29973436-29973455 | MS.gene53726:intron | 35.0% |
| !! | ATTACATCGATTTATCCGGT+CGG | + | chr1.3:29975673-29975692 | MS.gene53726:CDS | 35.0% |
| !! | CCCTTATCGATTCTTATAGT+TGG | + | chr1.3:29976938-29976957 | MS.gene53726:CDS | 35.0% |
| !! | TGGTTTGTTTGTATTGTGTC+TGG | + | chr1.3:29972736-29972755 | MS.gene53726:intron | 35.0% |
| !!! | AATTTGCGCCTTTTTTCTCT+TGG | - | chr1.3:29975286-29975305 | None:intergenic | 35.0% |
| !!! | CCCATTATTGTATTTTTGGC+AGG | + | chr1.3:29977426-29977445 | MS.gene53726:intron | 35.0% |
| !!! | TCCTTTGTTTTGAAGCCTTA+AGG | - | chr1.3:29974585-29974604 | None:intergenic | 35.0% |
| !!! | TGAGTTTTGGTTGCTAAGTT+TGG | + | chr1.3:29973418-29973437 | MS.gene53726:intron | 35.0% |
| AAAGCAACAAAATGAGGGAG+AGG | - | chr1.3:29973894-29973913 | None:intergenic | 40.0% | |
| AATCGTACATACCTCGACAT+TGG | - | chr1.3:29972550-29972569 | None:intergenic | 40.0% | |
| AATTCTGCATACAGCAGAGT+TGG | - | chr1.3:29974462-29974481 | None:intergenic | 40.0% | |
| ACAATGAGATATGGTACCTC+CGG | - | chr1.3:29975936-29975955 | None:intergenic | 40.0% | |
| ACACCTCTGATCATAAGTGT+CGG | - | chr1.3:29972833-29972852 | None:intergenic | 40.0% | |
| ACCTCGACATTGGTAAACAA+TGG | - | chr1.3:29972540-29972559 | None:intergenic | 40.0% | |
| ATATCAAGAGTGGTTGAGAG+TGG | + | chr1.3:29974848-29974867 | MS.gene53726:CDS | 40.0% | |
| ATATCATGGTGTTCCCACAA+AGG | + | chr1.3:29973948-29973967 | MS.gene53726:CDS | 40.0% | |
| ATCCATCTATGAAGCATGGA+CGG | - | chr1.3:29972907-29972926 | None:intergenic | 40.0% | |
| ATTGGACCAATACTGATCCT+AGG | + | chr1.3:29976194-29976213 | MS.gene53726:intron | 40.0% | |
| CTATCAGGACCCACTTTATT+TGG | + | chr1.3:29976436-29976455 | MS.gene53726:CDS | 40.0% | |
| CTCCTACAACCTAAACACAT+AGG | - | chr1.3:29976369-29976388 | None:intergenic | 40.0% | |
| GCTGTGGTATATGCAAAGAA+AGG | + | chr1.3:29973678-29973697 | MS.gene53726:CDS | 40.0% | |
| GGAACTACCTAGTCAATTTC+TGG | + | chr1.3:29977482-29977501 | MS.gene53726:CDS | 40.0% | |
| GTGGCAATCATGTACTTATC+GGG | + | chr1.3:29975102-29975121 | MS.gene53726:CDS | 40.0% | |
| TACTCCATTTCTTCACTCCT+AGG | - | chr1.3:29976214-29976233 | None:intergenic | 40.0% | |
| TATCAACATGGCTGCACAAA+TGG | + | chr1.3:29976465-29976484 | MS.gene53726:CDS | 40.0% | |
| TCAAGAAACCATAGATGCTG+TGG | + | chr1.3:29976898-29976917 | MS.gene53726:CDS | 40.0% | |
| TCACATCCATCTATGAAGCA+TGG | - | chr1.3:29972911-29972930 | None:intergenic | 40.0% | |
| TCATGCACCCTCTATTCAAT+AGG | + | chr1.3:29977551-29977570 | MS.gene53726:CDS | 40.0% | |
| TGAAGGATAGCTTACACAAG+TGG | - | chr1.3:29973810-29973829 | None:intergenic | 40.0% | |
| TGATAAGCAGTTTCCTGCTT+GGG | + | chr1.3:29975892-29975911 | MS.gene53726:CDS | 40.0% | |
| TGATCAAGAATTCCTTGGAG+AGG | + | chr1.3:29974244-29974263 | MS.gene53726:CDS | 40.0% | |
| TGATCCTAGGAGTGAAGAAA+TGG | + | chr1.3:29976207-29976226 | MS.gene53726:intron | 40.0% | |
| TGATCTGGACATTGCATCAA+AGG | + | chr1.3:29973506-29973525 | MS.gene53726:CDS | 40.0% | |
| TGCTTTAACCACAGCATCTA+TGG | - | chr1.3:29976909-29976928 | None:intergenic | 40.0% | |
| TGTTATCCAAGTGAGAGCAA+CGG | - | chr1.3:29974694-29974713 | None:intergenic | 40.0% | |
| TTCACTCCTAGGATCAGTAT+TGG | - | chr1.3:29976203-29976222 | None:intergenic | 40.0% | |
| TTGTGTGCGTGTGTATACTA+TGG | + | chr1.3:29974526-29974545 | MS.gene53726:intron | 40.0% | |
| TTTGCATATACCACAGCCAT+AGG | - | chr1.3:29973675-29973694 | None:intergenic | 40.0% | |
| ! | AGACAAAGTGGTCTCCATTT+TGG | - | chr1.3:29974923-29974942 | None:intergenic | 40.0% |
| ! | AGTTGTCGAAGTGTGAGTTT+TGG | + | chr1.3:29973405-29973424 | MS.gene53726:intron | 40.0% |
| ! | ATGTCATCGATCAGAAGTGT+CGG | - | chr1.3:29972703-29972722 | None:intergenic | 40.0% |
| ! | ATTGAATAGAGGGTGCATGA+GGG | - | chr1.3:29977551-29977570 | None:intergenic | 40.0% |
| ! | CTTATGATCAGAGGTGTGTT+CGG | + | chr1.3:29972836-29972855 | MS.gene53726:intron | 40.0% |
| ! | GAAGGCATAATGGAAGCTTA+TGG | + | chr1.3:29976391-29976410 | MS.gene53726:CDS | 40.0% |
| ! | GACGACCTGTAGAACTTTTT+AGG | - | chr1.3:29977124-29977143 | None:intergenic | 40.0% |
| ! | GTCATCGTGATTTTTCTTGC+AGG | + | chr1.3:29974811-29974830 | MS.gene53726:intron | 40.0% |
| ! | TATTGAATAGAGGGTGCATG+AGG | - | chr1.3:29977552-29977571 | None:intergenic | 40.0% |
| ! | TCTTGCAGGATCCTTTTCTA+AGG | + | chr1.3:29974825-29974844 | MS.gene53726:intron | 40.0% |
| ! | TGTAGGAGTTGAAGGCATAA+TGG | + | chr1.3:29976381-29976400 | MS.gene53726:CDS | 40.0% |
| ! | TTGTTGGTTGTTGCAGATTC+AGG | - | chr1.3:29972474-29972493 | None:intergenic | 40.0% |
| !! | ATCATAAGTGTCGGTGCTAT+AGG | - | chr1.3:29972824-29972843 | None:intergenic | 40.0% |
| !! | CAGTTTTAGTGTCTGCATGA+AGG | - | chr1.3:29974222-29974241 | None:intergenic | 40.0% |
| !! | CTGTAGAACTTTTTAGGCGA+CGG | - | chr1.3:29977118-29977137 | None:intergenic | 40.0% |
| !! | GTTTAGGTTGTAGGAGTTGA+AGG | + | chr1.3:29976373-29976392 | MS.gene53726:intron | 40.0% |
| !! | TCCCTATGTGTTTAGGTTGT+AGG | + | chr1.3:29976364-29976383 | MS.gene53726:intron | 40.0% |
| AAAGCAGCGAAAGAAGCAGT+AGG | + | chr1.3:29972438-29972457 | MS.gene53726:CDS | 45.0% | |
| AACTGTCTCCTCAGCATGAA+TGG | - | chr1.3:29974642-29974661 | None:intergenic | 45.0% | |
| AATGTCCATGATCTTCCCAC+AGG | + | chr1.3:29976856-29976875 | MS.gene53726:intron | 45.0% | |
| ACACGGACTCTAACATGTGT+TGG | - | chr1.3:29972865-29972884 | None:intergenic | 45.0% | |
| AGATTGTGACCAAACCAAGC+AGG | + | chr1.3:29974552-29974571 | MS.gene53726:intron | 45.0% | |
| AGCCGTGTAGAAGAAATCGA+CGG | - | chr1.3:29972505-29972524 | None:intergenic | 45.0% | |
| ATGCAGGCTATTATGGAGGT+TGG | + | chr1.3:29975845-29975864 | MS.gene53726:intron | 45.0% | |
| CAAGCAGGAGCTTAACCTTA+AGG | + | chr1.3:29974567-29974586 | MS.gene53726:CDS | 45.0% | |
| CAATGAGATATGGTACCTCC+GGG | - | chr1.3:29975935-29975954 | None:intergenic | 45.0% | |
| CAGACATCACAGACACAACA+CGG | - | chr1.3:29972615-29972634 | None:intergenic | 45.0% | |
| CGAACTGTTTGAATCCGGAA+TGG | + | chr1.3:29973742-29973761 | MS.gene53726:CDS | 45.0% | |
| CGTCGCCTAAAAAGTTCTAC+AGG | + | chr1.3:29977116-29977135 | MS.gene53726:CDS | 45.0% | |
| CTGATAAGCAGTTTCCTGCT+TGG | + | chr1.3:29975891-29975910 | MS.gene53726:CDS | 45.0% | |
| CTGTAACAACTCCATCCTGT+GGG | - | chr1.3:29976874-29976893 | None:intergenic | 45.0% | |
| CTTAAGGTTAAGCTCCTGCT+TGG | - | chr1.3:29974569-29974588 | None:intergenic | 45.0% | |
| GATAAGCAGTTTCCTGCTTG+GGG | + | chr1.3:29975893-29975912 | MS.gene53726:CDS | 45.0% | |
| GATTTCTTCTACACGGCTCA+AGG | + | chr1.3:29972507-29972526 | MS.gene53726:CDS | 45.0% | |
| GCCATTGTTTACCAATGTCG+AGG | + | chr1.3:29972536-29972555 | MS.gene53726:CDS | 45.0% | |
| GGATTTGGAGGAAAGATACC+CGG | + | chr1.3:29975914-29975933 | MS.gene53726:CDS | 45.0% | |
| GGCAATTACCATTCATGCTG+AGG | + | chr1.3:29974631-29974650 | MS.gene53726:CDS | 45.0% | |
| GTATACACACGCACACAAAC+AGG | - | chr1.3:29974524-29974543 | None:intergenic | 45.0% | |
| TATCTTCCGTTGCTCTCACT+TGG | + | chr1.3:29974685-29974704 | MS.gene53726:CDS | 45.0% | |
| TCTGAAGGGTCAACTCTTTG+TGG | + | chr1.3:29975433-29975452 | MS.gene53726:CDS | 45.0% | |
| TCTGACTGAGAAAGCAGTAC+AGG | - | chr1.3:29974038-29974057 | None:intergenic | 45.0% | |
| TCTGTAACAACTCCATCCTG+TGG | - | chr1.3:29976875-29976894 | None:intergenic | 45.0% | |
| TGCAAAGAATCTGGCTGTTG+AGG | - | chr1.3:29975654-29975673 | None:intergenic | 45.0% | |
| TTAGAGTCCGTGTTTGTGAC+TGG | + | chr1.3:29972872-29972891 | MS.gene53726:intron | 45.0% | |
| TTGGTTGCGGTAGATTTCAC+TGG | + | chr1.3:29975524-29975543 | MS.gene53726:CDS | 45.0% | |
| TTTCTCACCTCAGAGCTAGT+TGG | - | chr1.3:29975977-29975996 | None:intergenic | 45.0% | |
| ! | CTCTGTTGTGCAAGCTCTTT+TGG | + | chr1.3:29977458-29977477 | MS.gene53726:CDS | 45.0% |
| ! | GGCTAGTTGCACTTTATCAG+AGG | + | chr1.3:29974265-29974284 | MS.gene53726:CDS | 45.0% |
| ! | TGAGGACTTCCATTTGAAGC+TGG | - | chr1.3:29975636-29975655 | None:intergenic | 45.0% |
| ! | TGTTGTGCAAGCTCTTTTGG+AGG | + | chr1.3:29977461-29977480 | MS.gene53726:CDS | 45.0% |
| !! | CAGGTACTGGATGCTGATAA+TGG | + | chr1.3:29977092-29977111 | MS.gene53726:intron | 45.0% |
| !! | TGTGCAGCCATGTTGATAAC+TGG | - | chr1.3:29976463-29976482 | None:intergenic | 45.0% |
| !! | TAAATAAATATTTCTTTAAT+TGG | - | chr1.3:29973226-29973245 | None:intergenic | 5.0% |
| ACGACCACCAGTCACAAACA+CGG | - | chr1.3:29972882-29972901 | None:intergenic | 50.0% | |
| ACTTAGCTGGATCCGTGCTA+AGG | - | chr1.3:29977026-29977045 | None:intergenic | 50.0% | |
| ATCGACGGCGTCATTGTTGT+TGG | - | chr1.3:29972490-29972509 | None:intergenic | 50.0% | |
| CACACGCAATGGACAAGAGA+AGG | + | chr1.3:29975319-29975338 | MS.gene53726:CDS | 50.0% | |
| CAGACACACACACATGAAGC+TGG | + | chr1.3:29974414-29974433 | MS.gene53726:intron | 50.0% | |
| CAGTTTCCTGCTTGGGGATT+TGG | + | chr1.3:29975899-29975918 | MS.gene53726:CDS | 50.0% | |
| CTTCTCTTGTCCATTGCGTG+TGG | - | chr1.3:29975321-29975340 | None:intergenic | 50.0% | |
| GGTTAAGCTCCTGCTTGGTT+TGG | - | chr1.3:29974564-29974583 | None:intergenic | 50.0% | |
| GTCCGTCCATGCTTCATAGA+TGG | + | chr1.3:29972902-29972921 | MS.gene53726:intron | 50.0% | |
| TCAAGAGTGGTTGAGAGTGG+AGG | + | chr1.3:29974851-29974870 | MS.gene53726:CDS | 50.0% | |
| TCAGAGTGATCCTATGGCTG+TGG | + | chr1.3:29973662-29973681 | MS.gene53726:intron | 50.0% | |
| TCCATCCTGTGGGAAGATCA+TGG | - | chr1.3:29976864-29976883 | None:intergenic | 50.0% | |
| TCCATGATCTTCCCACAGGA+TGG | + | chr1.3:29976860-29976879 | MS.gene53726:intron | 50.0% | |
| TCTTGTCCATTGCGTGTGGA+TGG | - | chr1.3:29975317-29975336 | None:intergenic | 50.0% | |
| TTACGCAGTGTCACGCTATC+AGG | + | chr1.3:29976421-29976440 | MS.gene53726:CDS | 50.0% | |
| TTTCCTCCAAATCCCCAAGC+AGG | - | chr1.3:29975908-29975927 | None:intergenic | 50.0% | |
| TTTCCTGCTTGGGGATTTGG+AGG | + | chr1.3:29975902-29975921 | MS.gene53726:CDS | 50.0% | |
| TTTGGAGGAAAGATACCCGG+AGG | + | chr1.3:29975917-29975936 | MS.gene53726:CDS | 50.0% | |
| ! | AAGTGCAACTAGCCTCTCCA+AGG | - | chr1.3:29974259-29974278 | None:intergenic | 50.0% |
| ! | AGAGGGTGCATGAGGGAAAT+GGG | - | chr1.3:29977544-29977563 | None:intergenic | 50.0% |
| ! | GCACCGACACTTATGATCAG+AGG | + | chr1.3:29972827-29972846 | MS.gene53726:intron | 50.0% |
| ! | TAGAGGGTGCATGAGGGAAA+TGG | - | chr1.3:29977545-29977564 | None:intergenic | 50.0% |
| !! | AAGCGCTGATTTCACGAGCA+TGG | + | chr1.3:29976967-29976986 | MS.gene53726:CDS | 50.0% |
| !! | CGCCGTCGATTTCTTCTACA+CGG | + | chr1.3:29972500-29972519 | MS.gene53726:CDS | 50.0% |
| GAGTCCGTGTTTGTGACTGG+TGG | + | chr1.3:29972875-29972894 | MS.gene53726:intron | 55.0% | |
| GCAGCGAAAGAAGCAGTAGG+AGG | + | chr1.3:29972441-29972460 | MS.gene53726:CDS | 55.0% | |
| GTCATGCCATCCACACGCAA+TGG | + | chr1.3:29975308-29975327 | MS.gene53726:CDS | 55.0% | |
| TGAGGGAAATGGGGAACGAG+TGG | - | chr1.3:29977534-29977553 | None:intergenic | 55.0% | |
| ! | GAGGGTGCATGAGGGAAATG+GGG | - | chr1.3:29977543-29977562 | None:intergenic | 55.0% |
| !! | CGCTGATTTCACGAGCATGG+AGG | + | chr1.3:29976970-29976989 | MS.gene53726:CDS | 55.0% |
| !! | TGGGAGTCCAACTAGCTCTG+AGG | + | chr1.3:29975967-29975986 | MS.gene53726:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 29972414 | 29977572 | 29972414 | ID=MS.gene53726 |
| chr1.3 | mRNA | 29972414 | 29977572 | 29972414 | ID=MS.gene53726.t1;Parent=MS.gene53726 |
| chr1.3 | exon | 29972414 | 29972557 | 29972414 | ID=MS.gene53726.t1.exon1;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29972414 | 29972557 | 29972414 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29973480 | 29973527 | 29973480 | ID=MS.gene53726.t1.exon2;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29973480 | 29973527 | 29973480 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29973666 | 29973814 | 29973666 | ID=MS.gene53726.t1.exon3;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29973666 | 29973814 | 29973666 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29973921 | 29973969 | 29973921 | ID=MS.gene53726.t1.exon4;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29973921 | 29973969 | 29973921 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29974230 | 29974286 | 29974230 | ID=MS.gene53726.t1.exon5;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29974230 | 29974286 | 29974230 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29974554 | 29974733 | 29974554 | ID=MS.gene53726.t1.exon6;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29974554 | 29974733 | 29974554 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29974833 | 29974967 | 29974833 | ID=MS.gene53726.t1.exon7;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29974833 | 29974967 | 29974833 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29975062 | 29975123 | 29975062 | ID=MS.gene53726.t1.exon8;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29975062 | 29975123 | 29975062 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29975244 | 29975340 | 29975244 | ID=MS.gene53726.t1.exon9;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29975244 | 29975340 | 29975244 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29975431 | 29975545 | 29975431 | ID=MS.gene53726.t1.exon10;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29975431 | 29975545 | 29975431 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29975637 | 29975713 | 29975637 | ID=MS.gene53726.t1.exon11;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29975637 | 29975713 | 29975637 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29975851 | 29975988 | 29975851 | ID=MS.gene53726.t1.exon12;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29975851 | 29975988 | 29975851 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29976379 | 29976546 | 29976379 | ID=MS.gene53726.t1.exon13;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29976379 | 29976546 | 29976379 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29976878 | 29976991 | 29976878 | ID=MS.gene53726.t1.exon14;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29976878 | 29976991 | 29976878 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29977095 | 29977191 | 29977095 | ID=MS.gene53726.t1.exon15;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29977095 | 29977191 | 29977095 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| chr1.3 | exon | 29977448 | 29977572 | 29977448 | ID=MS.gene53726.t1.exon16;Parent=MS.gene53726.t1 |
| chr1.3 | CDS | 29977448 | 29977572 | 29977448 | ID=cds.MS.gene53726.t1;Parent=MS.gene53726.t1 |
| Gene Sequence |
| Protein sequence |
